@isaacriehm/cairn-core 0.3.8 → 0.4.1

package/dist/init/source-comments/ingest.js

@@ -24,6 +24,7 @@ import { writeInvariantsLedger } from "../../ground/ledgers.js";
 import { decisionsDir, invariantsDir } from "../../ground/paths.js";
 import { coerceInvariantIds, readScopeIndex, writeScopeIndex, } from "../../ground/scope-index.js";
 import { logger } from "../../logger.js";
+import { scoreDecDraft, scoreInvariant, } from "../../attention/scoring.js";
 import { applyStripReplace, formatBareCitation, } from "./strip-replace.js";
 import { classifyBlocks } from "./classify.js";
 import { walkSourceComments } from "./walker.js";
@@ -45,6 +46,7 @@ export async function runSourceCommentsIngestion(args) {
     const walk = walkSourceComments(walkOpts);
     const classifyResult = await classifyBlocks({
         blocks: walk.blocks,
+        repoRoot,
         ...(args.mockClassify !== undefined ? { mockClassify: args.mockClassify } : {}),
         ...(args.onBatchProgress !== undefined
             ? { onBatchProgress: args.onBatchProgress }
@@ -71,8 +73,8 @@ export async function runSourceCommentsIngestion(args) {
     // covers all files. Each item points at the original constraint
     // comment block; replacement is `// §INV-NNNN`.
     const invariantStripItems = [];
-    const existingIds = scanExistingDecisionIds(repoRoot);
-    const existingInvariantIds = scanExistingInvariantIds(repoRoot);
+    const existingIds = args.existingDecIds ?? scanExistingDecisionIds(repoRoot);
+    const existingInvariantIds = args.existingInvIds ?? scanExistingInvariantIds(repoRoot);
     for (let i = 0; i < walk.blocks.length; i++) {
         const block = walk.blocks[i];
         const cls = classifyResult.classifications[i];
@@ -81,6 +83,16 @@ export async function runSourceCommentsIngestion(args) {
         if (cls.kind === "rationale" && cls.suggestedDecDraft.length > 0) {
             const id = allocateDecisionId(repoRoot, existingIds);
             existingIds.add(id);
+            const confidence = args.globs !== undefined
+                ? scoreDecDraft({
+                    sourceFile: block.file,
+                    prose: block.prose,
+                    title: cls.suggestedDecDraft,
+                    rawComment: block.raw,
+                    globs: args.globs,
+                    ...(args.pilotModule !== undefined ? { pilotModule: args.pilotModule } : {}),
+                })
+                : undefined;
             if (args.dryRun !== true) {
                 const written = writeDecDraft({
                     repoRoot,
@@ -88,6 +100,7 @@ export async function runSourceCommentsIngestion(args) {
                     block,
                     classification: cls,
                     generatedAt: nowIso,
+                    ...(confidence !== undefined ? { confidence } : {}),
                 });
                 decDraftsWritten.push({
                     id,
@@ -114,6 +127,16 @@ export async function runSourceCommentsIngestion(args) {
             });
             const invId = allocateInvariantId(repoRoot, existingInvariantIds);
             existingInvariantIds.add(invId);
+            const invConfidence = args.globs !== undefined
+                ? scoreInvariant({
+                    sourceFile: block.file,
+                    prose: cls.suggestedInvariant,
+                    title: cls.suggestedInvariant.split("\n")[0] ?? "",
+                    rawComment: block.raw,
+                    globs: args.globs,
+                    ...(args.pilotModule !== undefined ? { pilotModule: args.pilotModule } : {}),
+                })
+                : undefined;
             if (args.dryRun !== true) {
                 const written = writeInvariantFile({
                     repoRoot,
@@ -121,6 +144,7 @@ export async function runSourceCommentsIngestion(args) {
                     block,
                     classification: cls,
                     generatedAt: nowIso,
+                    ...(invConfidence !== undefined ? { confidence: invConfidence } : {}),
                 });
                 invariantsWritten.push({
                     id: invId,
@@ -396,7 +420,7 @@ function writeDecDraft(args) {
         decided_at: args.generatedAt,
         decided_by: "cairn-init",
         capture_source: "init-source-comments",
-        capture_confidence: "medium",
+        capture_confidence: args.confidence ?? "medium",
         sourceFile: args.block.file,
         sourceRange: `${args.block.startLine}-${args.block.endLine}`,
         blockId: args.block.id,
@@ -436,6 +460,7 @@ function writeInvariantFile(args) {
         audience: "dual",
         generated: args.generatedAt,
         "verified-at": args.generatedAt,
+        capture_confidence: args.confidence ?? "medium",
         source_decision: null,
         sourceFile: args.block.file,
         sourceRange: `${args.block.startLine}-${args.block.endLine}`,

package/dist/init/source-comments/ingest.js.map

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package/dist/mcp/tools/attention-dedup.d.ts

@@ -0,0 +1,21 @@
+/**
+ * `cairn_attention_dedup` MCP tool.
+ *
+ * Wraps `findDuplicateClusters` so the cairn-attention skill can render
+ * a `## Potential duplicates` section before per-draft triage prompts.
+ * Pure-deterministic (no LLM, no quota burn) — token-Jaccard over the
+ * frontmatter title + the first 500 chars of body, two-tier thresholds:
+ *   - `>= 0.5` definite duplicates → skill offers merge-by-default
+ *   - `0.4..0.5` potential duplicates → flagged for review
+ *
+ * Skill renders the cluster summary, then drives the operator through
+ * triage with `cairn_resolve_attention(choice='b', kind='decision_draft')`
+ * to reject the duplicates and keep the survivor.
+ */
+import type { ToolDef } from "./types.js";
+interface DedupInput {
+    thresholdFloor?: number;
+    thresholdDefinite?: number;
+}
+export declare const attentionDedupTool: ToolDef<DedupInput>;
+export {};

package/dist/mcp/tools/attention-dedup.js

@@ -0,0 +1,34 @@
+/**
+ * `cairn_attention_dedup` MCP tool.
+ *
+ * Wraps `findDuplicateClusters` so the cairn-attention skill can render
+ * a `## Potential duplicates` section before per-draft triage prompts.
+ * Pure-deterministic (no LLM, no quota burn) — token-Jaccard over the
+ * frontmatter title + the first 500 chars of body, two-tier thresholds:
+ *   - `>= 0.5` definite duplicates → skill offers merge-by-default
+ *   - `0.4..0.5` potential duplicates → flagged for review
+ *
+ * Skill renders the cluster summary, then drives the operator through
+ * triage with `cairn_resolve_attention(choice='b', kind='decision_draft')`
+ * to reject the duplicates and keep the survivor.
+ */
+import { z } from "zod";
+import { DEFAULT_THRESHOLD_DEFINITE, DEFAULT_THRESHOLD_FLOOR, findDuplicateClusters, } from "../../attention/index.js";
+const inputShape = {
+    thresholdFloor: z.number().min(0).max(1).optional(),
+    thresholdDefinite: z.number().min(0).max(1).optional(),
+};
+export const attentionDedupTool = {
+    name: "cairn_attention_dedup",
+    description: "Cluster pending DEC drafts in `_inbox/` by token-Jaccard similarity. Returns clusters of likely-duplicate drafts the cairn-attention skill renders before per-item triage. Two tiers: definite (Jaccard >= 0.5) and potential (0.4..0.5). Pure-deterministic, no Haiku, no quota burn — same input gives the same clusters every time. Defaults: floor 0.4, definite 0.5.",
+    inputSchema: inputShape,
+    handler: async (ctx, input) => {
+        const result = findDuplicateClusters({
+            repoRoot: ctx.repoRoot,
+            thresholdFloor: input.thresholdFloor ?? DEFAULT_THRESHOLD_FLOOR,
+            thresholdDefinite: input.thresholdDefinite ?? DEFAULT_THRESHOLD_DEFINITE,
+        });
+        return result;
+    },
+};
+//# sourceMappingURL=attention-dedup.js.map

package/dist/mcp/tools/attention-dedup.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"attention-dedup.js","sourceRoot":"","sources":["../../../src/mcp/tools/attention-dedup.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;GAaG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AACxB,OAAO,EACL,0BAA0B,EAC1B,uBAAuB,EACvB,qBAAqB,GACtB,MAAM,0BAA0B,CAAC;AAIlC,MAAM,UAAU,GAAG;IACjB,cAAc,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,QAAQ,EAAE;IACnD,iBAAiB,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,QAAQ,EAAE;CACvD,CAAC;AAOF,MAAM,CAAC,MAAM,kBAAkB,GAAwB;IACrD,IAAI,EAAE,uBAAuB;IAC7B,WAAW,EACT,2WAA2W;IAC7W,WAAW,EAAE,UAAU;IACvB,OAAO,EAAE,KAAK,EAAE,GAAe,EAAE,KAAiB,EAAE,EAAE;QACpD,MAAM,MAAM,GAAG,qBAAqB,CAAC;YACnC,QAAQ,EAAE,GAAG,CAAC,QAAQ;YACtB,cAAc,EAAE,KAAK,CAAC,cAAc,IAAI,uBAAuB;YAC/D,iBAAiB,EAAE,KAAK,CAAC,iBAAiB,IAAI,0BAA0B;SACzE,CAAC,CAAC;QACH,OAAO,MAAM,CAAC;IAChB,CAAC;CACF,CAAC"}

package/dist/mcp/tools/attention-restore.d.ts

@@ -0,0 +1,14 @@
+/**
+ * `cairn_attention_restore` MCP tool.
+ *
+ * Move a previously rejected or accepted DEC back into `_inbox/` as a
+ * draft so the operator can re-evaluate via the normal
+ * `cairn_resolve_attention` flow. See `attention/restore.ts` for the
+ * exact semantics around source-cite preservation.
+ */
+import type { ToolDef } from "./types.js";
+interface RestoreInput {
+    decId: string;
+}
+export declare const attentionRestoreTool: ToolDef<RestoreInput>;
+export {};

package/dist/mcp/tools/attention-restore.js

@@ -0,0 +1,22 @@
+/**
+ * `cairn_attention_restore` MCP tool.
+ *
+ * Move a previously rejected or accepted DEC back into `_inbox/` as a
+ * draft so the operator can re-evaluate via the normal
+ * `cairn_resolve_attention` flow. See `attention/restore.ts` for the
+ * exact semantics around source-cite preservation.
+ */
+import { z } from "zod";
+import { restoreDec } from "../../attention/index.js";
+const inputShape = {
+    decId: z.string().regex(/^DEC-\d{4,}$/),
+};
+export const attentionRestoreTool = {
+    name: "cairn_attention_restore",
+    description: "Move a previously rejected or accepted DEC back to draft state in `_inbox/<id>.draft.md` so the operator can re-evaluate via cairn_resolve_attention. Rejected DECs round-trip cleanly. Accepted DECs lose their canonical entry + ledger row but the inline `// §DEC-NNNN` source cite stays — re-accepting is idempotent (handled by the already-stripped check). Returns the prior state (`rejected` | `accepted` | `draft` | `not-found`) and the new draft path.",
+    inputSchema: inputShape,
+    handler: async (ctx, input) => {
+        return await restoreDec({ repoRoot: ctx.repoRoot, decId: input.decId });
+    },
+};
+//# sourceMappingURL=attention-restore.js.map

package/dist/mcp/tools/attention-restore.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"attention-restore.js","sourceRoot":"","sources":["../../../src/mcp/tools/attention-restore.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AACxB,OAAO,EAAE,UAAU,EAAE,MAAM,0BAA0B,CAAC;AAItD,MAAM,UAAU,GAAG;IACjB,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,KAAK,CAAC,cAAc,CAAC;CACxC,CAAC;AAMF,MAAM,CAAC,MAAM,oBAAoB,GAA0B;IACzD,IAAI,EAAE,yBAAyB;IAC/B,WAAW,EACT,ucAAuc;IACzc,WAAW,EAAE,UAAU;IACvB,OAAO,EAAE,KAAK,EAAE,GAAe,EAAE,KAAmB,EAAE,EAAE;QACtD,OAAO,MAAM,UAAU,CAAC,EAAE,QAAQ,EAAE,GAAG,CAAC,QAAQ,EAAE,KAAK,EAAE,KAAK,CAAC,KAAK,EAAE,CAAC,CAAC;IAC1E,CAAC;CACF,CAAC"}

package/dist/mcp/tools/index.js

@@ -1,4 +1,6 @@
 import { archiveTool } from "./archive.js";
+import { attentionDedupTool } from "./attention-dedup.js";
+import { attentionRestoreTool } from "./attention-restore.js";
 import { bulkAcceptAttentionTool } from "./bulk-accept-attention.js";
 import { canonicalForTopicTool } from "./canonical-for-topic.js";
 import { decisionGetTool } from "./decision-get.js";
@@ -6,7 +8,7 @@ import { decisionsForSymbolTool } from "./decisions-for-symbol.js";
 import { decisionsInScopeTool } from "./decisions-in-scope.js";
 import { getFullTool } from "./get-full.js";
 import { groundGetTool } from "./ground-get.js";
-import { initPhaseTools, initResumeTool } from "./init-phases.js";
+import { initParallel678Tool, initPhaseTools, initResumeTool, } from "./init-phases.js";
 import { invariantGetTool } from "./invariant-get.js";
 import { invariantsInScopeTool } from "./invariants-in-scope.js";
 import { queryHistoryTool } from "./query-history.js";
@@ -39,8 +41,11 @@ export const allTools = [
     // Write — plugin-era
     resolveAttentionTool,
     bulkAcceptAttentionTool,
+    attentionDedupTool,
+    attentionRestoreTool,
     // Write — init pipeline (v0.2.0 MCP-native init)
     initResumeTool,
+    initParallel678Tool,
     ...initPhaseTools,
 ];
 //# sourceMappingURL=index.js.map

package/dist/mcp/tools/index.js.map

@@ -1 +1 @@
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package/dist/mcp/tools/init-phases.d.ts

@@ -34,5 +34,6 @@ interface PhaseToolInput {
 interface ResumeToolInput {
 }
 export declare const initPhaseTools: ToolDef<PhaseToolInput>[];
+export declare const initParallel678Tool: ToolDef<PhaseToolInput>;
 export declare const initResumeTool: ToolDef<ResumeToolInput>;
 export {};

package/dist/mcp/tools/init-phases.js

@@ -26,7 +26,7 @@
  * phase outputs — a single bad call could nuke a 90KB mapper run.
  */
 import { z } from "zod";
-import { PHASE_IDS, freshPhaseState, readPhaseState, resumePhases, runPhase10Strip, runPhase12Multidev, runPhase1Detect, runPhase2Walker, runPhase3Mapper, runPhase3bSeed, runPhase4Pilot, runPhase5Brand, runPhase6DocsIngest, runPhase7bSourceComments, runPhase7cRulesMerge, runPhase8Baseline, writePhaseState, } from "../../init/index.js";
+import { PHASE_IDS, clearProgress, freshPhaseState, readPhaseState, resumePhases, runPhase10Strip, runPhase12Multidev, runPhase1Detect, runPhase2Walker, runPhase3Mapper, runPhase3bSeed, runPhase4Pilot, runPhase5Brand, runPhase6DocsIngest, runPhase7bSourceComments, runPhase7cRulesMerge, runPhase8Baseline, runPhases678Parallel, writePhaseState, writeProgress, } from "../../init/index.js";
 import { mcpError } from "../errors.js";
 const phaseIdEnum = z.enum(PHASE_IDS);
 const phaseStateSchema = z.object({
@@ -103,7 +103,43 @@ function makePhaseTool(id) {
                 ? { ...state, answer: input.answer }
                 : state;
             const runner = RUNNERS[id];
+            // Coarse-grained statusline coverage: every phase gets at least
+            // one heartbeat write (batch=1, total=1) at entry so the operator
+            // sees the current phase id mid-init even for fast phases. The
+            // long phases (3-mapper, 6-docs-ingest, 7b-source-comments,
+            // 7c-rules-merge) overwrite with finer-grained per-batch progress
+            // from inside the runner. clearProgress at the end of every
+            // phase ensures stale heartbeats don't survive into the next.
+            const isLongPhase = id === "3-mapper" ||
+                id === "6-docs-ingest" ||
+                id === "7b-source-comments" ||
+                id === "7c-rules-merge";
+            if (!isLongPhase) {
+                writeProgress(state.repoRoot, {
+                    phase: id,
+                    batch: 1,
+                    total: 1,
+                    startedAt: Date.now(),
+                });
+            }
+            const t0 = performance.now();
             const result = await runner(stateForRun);
+            const durationMs = Math.round(performance.now() - t0);
+            clearProgress(state.repoRoot);
+            // Stamp `duration_ms` on the phase's output entry so init-state.json
+            // carries an ETA-auditable record for every phase, not just the ones
+            // that bother to track time internally (3-mapper). The result.state
+            // returned by the runner is freshly constructed; mutating its
+            // current-phase entry is safe and doesn't ripple to prior phases.
+            if (result.status !== "error") {
+                const phaseOut = result.state.outputs[id];
+                if (typeof phaseOut === "object" && phaseOut !== null) {
+                    const obj = phaseOut;
+                    if (obj["duration_ms"] === undefined) {
+                        obj["duration_ms"] = durationMs;
+                    }
+                }
+            }
             // Persist state ONLY on non-error results. An error path returns
             // the input state echo unchanged; persisting it would clobber
             // the on-disk state file with whatever shape the caller sent in
@@ -177,6 +213,57 @@ function phaseDescription(id) {
             return "Phase 12-multidev — detect per-host package manager(s) and emit JOIN.md hints for new contributors. No filesystem mutations. Idempotent.";
     }
 }
+/**
+ * Combined parallel runner for the post-pilot ingestion window. Runs
+ * phases 6-docs-ingest, 7b-source-comments, and 7c-rules-merge in
+ * parallel inside a single MCP call. The cairn-adopt skill prefers
+ * this tool when state.currentPhase=6-docs-ingest; the per-phase
+ * sequential tools remain registered for fallback / debug paths.
+ */
+function makeParallel678Tool() {
+    return {
+        name: "cairn_init_phases_678_parallel",
+        description: "Run phases 6-docs-ingest, 7b-source-comments, and 7c-rules-merge concurrently. Pre-scans existing DEC + INV ids and threads shared Sets through all three so id allocations don't collide. Returns the combined slim response with nextPhase=8-baseline. Skill prefers this when state.currentPhase=6-docs-ingest; the per-phase sequential tools stay available for fallback. Wall-clock saves the smaller-two phases' time on real-world adoptions.",
+        inputSchema: initPhaseInput,
+        handler: async (ctx, input) => {
+            let state = input.state ?? null;
+            if (state === null) {
+                state = readPhaseState(ctx.repoRoot);
+            }
+            if (state === null) {
+                return mcpError("VALIDATION_FAILED", "cairn_init_phases_678_parallel found no init state at .cairn/init-state.json. Call cairn_init_resume to start a fresh pipeline.");
+            }
+            if (state.currentPhase !== "6-docs-ingest") {
+                return mcpError("VALIDATION_FAILED", `cairn_init_phases_678_parallel requires state.currentPhase=6-docs-ingest, got ${state.currentPhase}`);
+            }
+            if (state.repoRoot !== ctx.repoRoot) {
+                return mcpError("VALIDATION_FAILED", `state.repoRoot ${state.repoRoot} does not match MCP context ${ctx.repoRoot}`);
+            }
+            const t0 = performance.now();
+            const result = await runPhases678Parallel(state);
+            const durationMs = Math.round(performance.now() - t0);
+            if (result.status !== "error") {
+                for (const id of ["6-docs-ingest", "7b-source-comments", "7c-rules-merge"]) {
+                    const phaseOut = result.state.outputs[id];
+                    if (typeof phaseOut === "object" && phaseOut !== null) {
+                        const obj = phaseOut;
+                        if (obj["duration_ms"] === undefined) {
+                            obj["duration_ms"] = durationMs;
+                        }
+                    }
+                }
+                try {
+                    writePhaseState(result.state);
+                }
+                catch (err) {
+                    return mcpError("INTERNAL_ERROR", `failed to persist init state: ${err instanceof Error ? err.message : String(err)}`);
+                }
+            }
+            return toSlim(result);
+        },
+    };
+}
 export const initPhaseTools = PHASE_IDS.map((id) => makePhaseTool(id));
+export const initParallel678Tool = makeParallel678Tool();
 export const initResumeTool = makeResumeTool();
 //# sourceMappingURL=init-phases.js.map

package/dist/mcp/tools/init-phases.js.map

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