@isaacriehm/cairn-core 0.3.7 → 0.4.0

package/dist/init/phases/source-comments-output-io.js

@@ -0,0 +1,84 @@
+/**
+ * Side-file persistence for the heavy Phase 7b output.
+ *
+ * `IngestSourceCommentsResult` carries the full walk (every comment block's
+ * raw text + prose) and the matching classifications. On a busy monorepo
+ * this crosses ~1.7 MB — far above what the MCP transport can echo back
+ * in a tool result. Mirrors the v0.3.5 mapper-output spillover: write the
+ * full payload to `.cairn/init/source-comments-walk.json` and persist a
+ * lightweight projection (counts, paths, ledger-relevant lists) into
+ * `init-state.json`.
+ *
+ * Downstream phases consume only the lightweight projection — the
+ * heavy walk + per-block classifications already live in
+ * `.cairn/baseline/source-comments-<ISO>.yaml` (the audit YAML), which
+ * the strip-replace stage and any later debug tools already read.
+ */
+import { existsSync, mkdirSync, readFileSync, renameSync, writeFileSync, } from "node:fs";
+import { dirname, join } from "node:path";
+/** Filename relative to repoRoot. */
+export const SOURCE_COMMENTS_WALK_PATH = join(".cairn", "init", "source-comments-walk.json");
+export function sourceCommentsWalkAbsPath(repoRoot) {
+    return join(repoRoot, SOURCE_COMMENTS_WALK_PATH);
+}
+/**
+ * Atomically write the full Phase 7b result. Creates `.cairn/init/`
+ * if needed.
+ */
+export function writeSourceCommentsWalkFile(repoRoot, full) {
+    const abs = sourceCommentsWalkAbsPath(repoRoot);
+    mkdirSync(dirname(abs), { recursive: true });
+    const tmp = `${abs}.tmp`;
+    writeFileSync(tmp, JSON.stringify(full, null, 2), "utf8");
+    renameSync(tmp, abs);
+    return abs;
+}
+/**
+ * Read the full Phase 7b result from `.cairn/init/source-comments-walk.json`.
+ * Returns null if missing or unreadable. Available for debug tooling and
+ * post-hoc inspection — phase consumers prefer the lightweight projection
+ * stored on state.
+ */
+export function readSourceCommentsWalkFile(repoRoot) {
+    const abs = sourceCommentsWalkAbsPath(repoRoot);
+    if (!existsSync(abs))
+        return null;
+    try {
+        return JSON.parse(readFileSync(abs, "utf8"));
+    }
+    catch {
+        return null;
+    }
+}
+/** Strip the heavy fields from a fresh ingest result for state persistence. */
+export function to7bResultPersisted(full) {
+    return {
+        walkPath: SOURCE_COMMENTS_WALK_PATH,
+        walkSummary: {
+            files: full.walk.files.length,
+            blocks: full.walk.blocks.length,
+            bytesScanned: full.walk.bytesScanned,
+            fileCountByLang: full.walk.fileCountByLang,
+            filesAvailable: full.walk.filesAvailable,
+            truncatedAtFileCap: full.walk.truncatedAtFileCap,
+        },
+        decDraftsWritten: full.decDraftsWritten,
+        invariantsWritten: full.invariantsWritten,
+        invariantStripFilesModified: full.invariantStripFilesModified,
+        invariantStripItemsApplied: full.invariantStripItemsApplied,
+        invariantStripItemsSkipped: full.invariantStripItemsSkipped,
+        invariantStripError: full.invariantStripError,
+        invariantProposalsAdded: full.invariantProposalsAdded,
+        canonicalCitationsAdded: full.canonicalCitationsAdded,
+        auditPath: full.auditPath,
+        auditRelPath: full.auditRelPath,
+        invariantProposalsPath: full.invariantProposalsPath,
+        canonicalCitationsPath: full.canonicalCitationsPath,
+        inputTokens: full.inputTokens,
+        outputTokens: full.outputTokens,
+        batchesRun: full.batchesRun,
+        batchesFailed: full.batchesFailed,
+        kindCounts: full.kindCounts,
+    };
+}
+//# sourceMappingURL=source-comments-output-io.js.map

package/dist/init/phases/source-comments-output-io.js.map

@@ -0,0 +1 @@
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package/dist/init/progress.d.ts

@@ -0,0 +1,35 @@
+/**
+ * Live adoption-progress heartbeat.
+ *
+ * The long ingestion phases (3-mapper, 6-docs-ingest, 7b-source-comments,
+ * 7c-rules-merge) run for minutes on busy monorepos. The MCP tool turn
+ * stays frozen until the phase completes, so the only mid-turn render
+ * channel is the Claude Code statusline. This module owns the file the
+ * statusline reads:
+ *
+ *   `.cairn/init/progress.json` — current-phase batch counter
+ *
+ * Phase wrappers `writeProgress` after each batch / module / doc / section
+ * completes; the statusline format module renders the snapshot as
+ * `⏳ adopt <phase> X/Y (P%) ~Nm left` until the phase wrapper
+ * `clearProgress` on completion.
+ */
+export declare const PROGRESS_PATH: string;
+export interface ProgressSnapshot {
+    /** Phase id currently running (e.g. `7b-source-comments`). */
+    phase: string;
+    /** 1-based batch / module / doc / section index. */
+    batch: number;
+    /** Total batches the phase will run. */
+    total: number;
+    /** Optional running count of successful classifications. */
+    classified?: number;
+    /** Optional running count of failed classifications. */
+    failed?: number;
+    /** Date.now() at phase start; used to extrapolate ETA. */
+    startedAt: number;
+}
+export declare function progressAbsPath(repoRoot: string): string;
+export declare function writeProgress(repoRoot: string, snap: ProgressSnapshot): void;
+export declare function clearProgress(repoRoot: string): void;
+export declare function readProgress(repoRoot: string): ProgressSnapshot | null;

package/dist/init/progress.js

@@ -0,0 +1,71 @@
+/**
+ * Live adoption-progress heartbeat.
+ *
+ * The long ingestion phases (3-mapper, 6-docs-ingest, 7b-source-comments,
+ * 7c-rules-merge) run for minutes on busy monorepos. The MCP tool turn
+ * stays frozen until the phase completes, so the only mid-turn render
+ * channel is the Claude Code statusline. This module owns the file the
+ * statusline reads:
+ *
+ *   `.cairn/init/progress.json` — current-phase batch counter
+ *
+ * Phase wrappers `writeProgress` after each batch / module / doc / section
+ * completes; the statusline format module renders the snapshot as
+ * `⏳ adopt <phase> X/Y (P%) ~Nm left` until the phase wrapper
+ * `clearProgress` on completion.
+ */
+import { existsSync, mkdirSync, readFileSync, unlinkSync, writeFileSync, } from "node:fs";
+import { dirname, join } from "node:path";
+export const PROGRESS_PATH = join(".cairn", "init", "progress.json");
+export function progressAbsPath(repoRoot) {
+    return join(repoRoot, PROGRESS_PATH);
+}
+export function writeProgress(repoRoot, snap) {
+    const path = progressAbsPath(repoRoot);
+    if (!existsSync(dirname(path))) {
+        mkdirSync(dirname(path), { recursive: true });
+    }
+    // Atomic-enough for the statusline reader: writeFileSync replaces in
+    // one syscall on common filesystems. Best-effort — if the disk is
+    // full or the dir is gone we silently swallow so a phase doesn't fail
+    // because the heartbeat couldn't write.
+    try {
+        writeFileSync(path, JSON.stringify(snap), "utf8");
+    }
+    catch {
+        /* best-effort */
+    }
+}
+export function clearProgress(repoRoot) {
+    const path = progressAbsPath(repoRoot);
+    if (existsSync(path)) {
+        try {
+            unlinkSync(path);
+        }
+        catch {
+            /* best-effort */
+        }
+    }
+}
+export function readProgress(repoRoot) {
+    const path = progressAbsPath(repoRoot);
+    if (!existsSync(path))
+        return null;
+    try {
+        const raw = readFileSync(path, "utf8");
+        const parsed = JSON.parse(raw);
+        if (typeof parsed !== "object" ||
+            parsed === null ||
+            typeof parsed.phase !== "string" ||
+            typeof parsed.batch !== "number" ||
+            typeof parsed.total !== "number" ||
+            typeof parsed.startedAt !== "number") {
+            return null;
+        }
+        return parsed;
+    }
+    catch {
+        return null;
+    }
+}
+//# sourceMappingURL=progress.js.map

package/dist/init/progress.js.map

@@ -0,0 +1 @@
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package/dist/init/rules-merge/ingest.d.ts

@@ -37,6 +37,20 @@ export interface RunRulesMergeArgs {
     mockClassify?: (section: RuleSection, source: RuleSourceFile) => RuleClassification;
     dryRun?: boolean;
     nowIso?: string;
+    /**
+     * Caller-supplied DEC id Set. Same role as in `runDocsIngestion`: when
+     * the parallel orchestrator runs phases 6 / 7b / 7c concurrently, all
+     * three share one Set so DEC id allocations don't collide.
+     */
+    existingDecIds?: Set<string>;
+    /**
+     * Optional progress callback fired after each section finishes
+     * classification. Enables the cairn-adopt statusline heartbeat.
+     */
+    onSectionProgress?: (row: {
+        index: number;
+        total: number;
+    }) => void;
 }
 export interface RunRulesMergeResult {
     sources: RuleSourceFile[];

package/dist/init/rules-merge/ingest.js

@@ -103,12 +103,15 @@ export async function runRulesMerge(args) {
         }
     }
     if (args.mockClassify !== undefined) {
-        for (const job of jobs) {
+        for (const [idx, job] of jobs.entries()) {
             allClassifications.push(args.mockClassify(job.section, job.source));
+            args.onSectionProgress?.({ index: idx + 1, total: jobs.length });
         }
     }
     else {
         let cursor = 0;
+        let completed = 0;
+        const total = jobs.length;
         const worker = async () => {
             while (cursor < jobs.length) {
                 const idx = cursor++;
@@ -117,6 +120,8 @@ export async function runRulesMerge(args) {
                     continue;
                 const cls = await classifySection(job.source, job.section);
                 allClassifications.push(cls);
+                completed += 1;
+                args.onSectionProgress?.({ index: completed, total });
             }
         };
         const workers = Array.from({ length: Math.min(CONCURRENCY, jobs.length) }, () => worker());
@@ -125,7 +130,7 @@ export async function runRulesMerge(args) {
     // Persist DEC drafts + conflicts.
     const decDraftsWritten = [];
     const conflictRows = [];
-    const existingIds = scanExistingDecisionIds(repoRoot);
+    const existingIds = args.existingDecIds ?? scanExistingDecisionIds(repoRoot);
     for (const cls of allClassifications) {
         if (cls.kind === "rule-net-new" && cls.proposedDecTitle.length > 0) {
             const id = allocateDecisionId(repoRoot, existingIds);
@@ -237,6 +242,7 @@ async function classifySection(source, section) {
             prompt,
             jsonSchema: CLASSIFY_SCHEMA,
             timeoutMs: PER_SECTION_TIMEOUT_MS,
+            isolateAmbientContext: true,
         });
         const parsed = result.parsed;
         if (typeof parsed !== "object" || parsed === null) {

package/dist/init/rules-merge/ingest.js.map

@@ -1 +1 @@
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package/dist/init/source-comments/classify.d.ts

@@ -45,6 +45,12 @@ export interface ClassifyArgs {
      * no Haiku call is made.
      */
     mockClassify?: (block: CommentBlock) => CommentClassification;
+    /**
+     * When set, every Haiku batch call is run with `cacheable: true` so
+     * re-running adoption against the same source corpus hits the
+     * `.cairn/cache/haiku/` cache instead of burning the operator's quota.
+     */
+    repoRoot?: string;
 }
 export interface ClassifyResult {
     classifications: CommentClassification[];

package/dist/init/source-comments/classify.js

@@ -14,9 +14,10 @@
  *     missing fields default to safe values
  */
 import { runClaude } from "../../claude/index.js";
+import { ClaudeError } from "../../claude/error.js";
 import { logger } from "../../logger.js";
 const log = logger("init.source-comments.classify");
-const BATCH_SIZE = 20;
+const BATCH_SIZE = 10;
 const PER_BATCH_TIMEOUT_MS = 90_000;
 const PROSE_CAP_PER_BLOCK = 1500;
 /**
@@ -90,6 +91,7 @@ export async function classifyBlocks(args) {
     const blocks = args.blocks;
     const total = Math.ceil(blocks.length / BATCH_SIZE);
     const out = new Array(blocks.length);
+    const repoRoot = args.repoRoot;
     if (args.mockClassify !== undefined) {
         for (let i = 0; i < blocks.length; i++) {
             const b = blocks[i];
@@ -117,7 +119,7 @@ export async function classifyBlocks(args) {
         const end = Math.min(start + BATCH_SIZE, blocks.length);
         const batch = blocks.slice(start, end);
         try {
-            const outcome = await classifyOneBatch(batch);
+            const outcome = await classifyOneBatchWithRetry(batch, repoRoot);
             return { batchIdx, outcome };
         }
         catch (err) {
@@ -193,7 +195,59 @@ export async function classifyBlocks(args) {
         batchesFailed,
     };
 }
-async function classifyOneBatch(batch) {
+/**
+ * Wraps `classifyOneBatch` with timeout-triggered half-split retry. When the
+ * first attempt aborts via SIGTERM (`error_kind: "timeout"`), splits the batch
+ * in half and re-issues both halves with the full per-batch timeout. Halves
+ * smaller than 2 are not split — they propagate the original error.
+ *
+ * Recovers most residual loss after the BATCH_SIZE 20→10 reduction; defends
+ * against tail-latency spikes from upstream Haiku capacity.
+ */
+async function classifyOneBatchWithRetry(batch, repoRoot) {
+    try {
+        return await classifyOneBatch(batch, repoRoot);
+    }
+    catch (err) {
+        const isTimeout = err instanceof ClaudeError && err.kind === "timeout";
+        if (!isTimeout || batch.length < 2) {
+            throw err;
+        }
+        log.warn({ batchSize: batch.length }, "batch timed out, splitting in half + retrying");
+        const half = Math.floor(batch.length / 2);
+        const left = batch.slice(0, half);
+        const right = batch.slice(half);
+        const [aRes, bRes] = await Promise.allSettled([
+            classifyOneBatch(left, repoRoot),
+            classifyOneBatch(right, repoRoot),
+        ]);
+        const merged = new Map();
+        let inputTokens = 0;
+        let outputTokens = 0;
+        let errorMessage;
+        for (const r of [aRes, bRes]) {
+            if (r.status === "fulfilled") {
+                for (const [k, v] of r.value.byId)
+                    merged.set(k, v);
+                inputTokens += r.value.inputTokens;
+                outputTokens += r.value.outputTokens;
+                if (r.value.errorMessage !== undefined)
+                    errorMessage = r.value.errorMessage;
+            }
+            else {
+                const msg = r.reason instanceof Error ? r.reason.message : String(r.reason);
+                errorMessage = msg;
+            }
+        }
+        return {
+            byId: merged,
+            inputTokens,
+            outputTokens,
+            ...(errorMessage !== undefined ? { errorMessage } : {}),
+        };
+    }
+}
+async function classifyOneBatch(batch, repoRoot) {
     const prompt = buildBatchPrompt(batch);
     const result = await runClaude({
         tier: "haiku",
@@ -201,6 +255,8 @@ async function classifyOneBatch(batch) {
         prompt,
         jsonSchema: BATCH_SCHEMA,
         timeoutMs: PER_BATCH_TIMEOUT_MS,
+        isolateAmbientContext: true,
+        ...(repoRoot !== undefined ? { repoRoot, cacheable: true } : {}),
     });
     const usage = result.usage;
     const inputTokens = typeof usage?.["input_tokens"] === "number" ? usage["input_tokens"] : 0;
@@ -268,6 +324,7 @@ function buildBatchPrompt(batch) {
 }
 const _internal = {
     buildBatchPrompt,
+    classifyOneBatchWithRetry,
     BATCH_SIZE,
     BATCH_SCHEMA,
     SYSTEM_PROMPT,

package/dist/init/source-comments/classify.js.map

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package/dist/init/source-comments/ingest.d.ts

@@ -16,6 +16,7 @@
  *     `.cairn/baseline/source-comments-<ISO>.yaml` — consumed by the
  *     strip-replace stage so it doesn't have to re-walk.
  */
+import type { ProjectGlobs } from "../../sensors/types.js";
 import type { ClassifyArgs, CommentClassification, CommentClassKind } from "./classify.js";
 import type { WalkOptions, WalkResult } from "./walker.js";
 export interface IngestSourceCommentsArgs {
@@ -30,6 +31,26 @@ export interface IngestSourceCommentsArgs {
     dryRun?: boolean;
     /** When set, override `Date.now()` for deterministic test outputs. */
     nowIso?: string;
+    /**
+     * Project globs from `.cairn/config.yaml` (or the mapper output). When
+     * provided, every DEC draft + invariant gets `capture_confidence` scored
+     * and stamped at write time so `cairn attention bulk-accept` becomes an
+     * O(1) file move instead of re-scoring every draft on disk.
+     */
+    globs?: ProjectGlobs;
+    /** Pilot module path (workflow.md `pilot_module`) for scoring bias. */
+    pilotModule?: string;
+    /**
+     * Caller-supplied DEC id Set, threaded by the parallel orchestrator
+     * across phases 6 / 7b / 7c so concurrent allocations don't collide.
+     */
+    existingDecIds?: Set<string>;
+    /**
+     * Caller-supplied INV id Set. Only 7b allocates invariant ids today,
+     * but the optional arg matches the DEC pattern for symmetry and lets
+     * future phases share the allocator.
+     */
+    existingInvIds?: Set<string>;
 }
 export interface IngestSourceCommentsResult {
     walk: WalkResult;

package/dist/init/source-comments/ingest.js

@@ -24,6 +24,7 @@ import { writeInvariantsLedger } from "../../ground/ledgers.js";
 import { decisionsDir, invariantsDir } from "../../ground/paths.js";
 import { coerceInvariantIds, readScopeIndex, writeScopeIndex, } from "../../ground/scope-index.js";
 import { logger } from "../../logger.js";
+import { scoreDecDraft, scoreInvariant, } from "../../attention/scoring.js";
 import { applyStripReplace, formatBareCitation, } from "./strip-replace.js";
 import { classifyBlocks } from "./classify.js";
 import { walkSourceComments } from "./walker.js";
@@ -45,6 +46,7 @@ export async function runSourceCommentsIngestion(args) {
     const walk = walkSourceComments(walkOpts);
     const classifyResult = await classifyBlocks({
         blocks: walk.blocks,
+        repoRoot,
         ...(args.mockClassify !== undefined ? { mockClassify: args.mockClassify } : {}),
         ...(args.onBatchProgress !== undefined
             ? { onBatchProgress: args.onBatchProgress }
@@ -71,8 +73,8 @@ export async function runSourceCommentsIngestion(args) {
     // covers all files. Each item points at the original constraint
     // comment block; replacement is `// §INV-NNNN`.
     const invariantStripItems = [];
-    const existingIds = scanExistingDecisionIds(repoRoot);
-    const existingInvariantIds = scanExistingInvariantIds(repoRoot);
+    const existingIds = args.existingDecIds ?? scanExistingDecisionIds(repoRoot);
+    const existingInvariantIds = args.existingInvIds ?? scanExistingInvariantIds(repoRoot);
     for (let i = 0; i < walk.blocks.length; i++) {
         const block = walk.blocks[i];
         const cls = classifyResult.classifications[i];
@@ -81,6 +83,16 @@ export async function runSourceCommentsIngestion(args) {
         if (cls.kind === "rationale" && cls.suggestedDecDraft.length > 0) {
             const id = allocateDecisionId(repoRoot, existingIds);
             existingIds.add(id);
+            const confidence = args.globs !== undefined
+                ? scoreDecDraft({
+                    sourceFile: block.file,
+                    prose: block.prose,
+                    title: cls.suggestedDecDraft,
+                    rawComment: block.raw,
+                    globs: args.globs,
+                    ...(args.pilotModule !== undefined ? { pilotModule: args.pilotModule } : {}),
+                })
+                : undefined;
             if (args.dryRun !== true) {
                 const written = writeDecDraft({
                     repoRoot,
@@ -88,6 +100,7 @@ export async function runSourceCommentsIngestion(args) {
                     block,
                     classification: cls,
                     generatedAt: nowIso,
+                    ...(confidence !== undefined ? { confidence } : {}),
                 });
                 decDraftsWritten.push({
                     id,
@@ -114,6 +127,16 @@ export async function runSourceCommentsIngestion(args) {
             });
             const invId = allocateInvariantId(repoRoot, existingInvariantIds);
             existingInvariantIds.add(invId);
+            const invConfidence = args.globs !== undefined
+                ? scoreInvariant({
+                    sourceFile: block.file,
+                    prose: cls.suggestedInvariant,
+                    title: cls.suggestedInvariant.split("\n")[0] ?? "",
+                    rawComment: block.raw,
+                    globs: args.globs,
+                    ...(args.pilotModule !== undefined ? { pilotModule: args.pilotModule } : {}),
+                })
+                : undefined;
             if (args.dryRun !== true) {
                 const written = writeInvariantFile({
                     repoRoot,
@@ -121,6 +144,7 @@ export async function runSourceCommentsIngestion(args) {
                     block,
                     classification: cls,
                     generatedAt: nowIso,
+                    ...(invConfidence !== undefined ? { confidence: invConfidence } : {}),
                 });
                 invariantsWritten.push({
                     id: invId,
@@ -396,7 +420,7 @@ function writeDecDraft(args) {
         decided_at: args.generatedAt,
         decided_by: "cairn-init",
         capture_source: "init-source-comments",
-        capture_confidence: "medium",
+        capture_confidence: args.confidence ?? "medium",
         sourceFile: args.block.file,
         sourceRange: `${args.block.startLine}-${args.block.endLine}`,
         blockId: args.block.id,
@@ -436,6 +460,7 @@ function writeInvariantFile(args) {
         audience: "dual",
         generated: args.generatedAt,
         "verified-at": args.generatedAt,
+        capture_confidence: args.confidence ?? "medium",
         source_decision: null,
         sourceFile: args.block.file,
         sourceRange: `${args.block.startLine}-${args.block.endLine}`,