@isaacriehm/cairn-core 0.21.0 → 0.22.1

package/dist/init/seed.js

@@ -6,10 +6,10 @@
  * substitution are passed through `applyPlaceholders`. Existing files
  * collide-fail unless `force: true`.
  */
-import { chmodSync, existsSync, mkdirSync, readFileSync, writeFileSync, } from "node:fs";
+import { chmodSync, existsSync, mkdirSync, readFileSync, statSync, writeFileSync, } from "node:fs";
 import { dirname, join } from "node:path";
 import { fileURLToPath } from "node:url";
-import { walkFs } from "@isaacriehm/cairn-state";
+import { cairnDir, isGhost, walkFs } from "@isaacriehm/cairn-state";
 const HERE = dirname(fileURLToPath(import.meta.url));
 /**
  * dist/init/seed.js → walk up to package root, then into templates/.
@@ -41,22 +41,69 @@ const SEED_TOP_LEVEL_ALLOWLIST = new Set([
     ".claude",
     ".github",
 ]);
+/**
+ * Ghost mode seeds ONLY `.cairn/*` (redirected out-of-repo via `cairnDir`).
+ * The `.claude/` rule + `.github/` CI workflow templates are client-tree
+ * artifacts — never written in ghost (constraint 1: nothing Cairn-shaped in
+ * the client repo). See ghost-mode design.
+ */
+const GHOST_SEED_ALLOWLIST = new Set([".cairn"]);
+/**
+ * Resolve a template's repo-relative path to its on-disk destination.
+ * `.cairn/<rest>` routes through `cairnHome` — out-of-repo in ghost,
+ * `<repoRoot>/.cairn/<rest>` in committed (byte-identical to the old
+ * `join(repoRoot, rel)`). `.claude/`/`.github/` stay in the client tree
+ * (committed only — gated out of the ghost allowlist).
+ */
+function seedDstPath(repoRoot, rel) {
+    const parts = rel.split("/");
+    if (parts[0] === ".cairn") {
+        return cairnDir(repoRoot, ...parts.slice(1));
+    }
+    return join(repoRoot, rel);
+}
+/**
+ * Belt-and-suspenders for ghost: add `/.cairn/` to `.git/info/exclude` (local,
+ * untracked — never committed). Ghost writes nothing under the client tree, but
+ * a missed code path that emitted a stray `.cairn/` would still be git-invisible.
+ * Never touches the tracked `.gitignore`. Best-effort.
+ */
+function addGitInfoExclude(repoRoot) {
+    try {
+        const gitDir = join(repoRoot, ".git");
+        if (!existsSync(gitDir) || !statSync(gitDir).isDirectory())
+            return;
+        const infoDir = join(gitDir, "info");
+        mkdirSync(infoDir, { recursive: true });
+        const excludePath = join(infoDir, "exclude");
+        const existing = existsSync(excludePath) ? readFileSync(excludePath, "utf8") : "";
+        if (/^\s*\/?\.cairn\/?\s*$/m.test(existing))
+            return; // already excluded
+        const sep = existing.length > 0 && !existing.endsWith("\n") ? "\n" : "";
+        writeFileSync(excludePath, `${existing}${sep}/.cairn/\n`, "utf8");
+    }
+    catch {
+        // best-effort; a missing/locked .git/info never blocks adoption
+    }
+}
 export function seedCairnLayout(opts) {
     const written = [];
     const collisions = [];
+    const ghost = isGhost(opts.repoRoot);
+    const allowlist = ghost ? GHOST_SEED_ALLOWLIST : SEED_TOP_LEVEL_ALLOWLIST;
     walkFs({
         dir: TEMPLATES_ROOT,
         onDir: (rel) => {
             if (rel === ".")
                 return true;
             const top = rel.split("/")[0];
-            return SEED_TOP_LEVEL_ALLOWLIST.has(top);
+            return allowlist.has(top);
         },
         onFile: (rel, absSrc) => {
             const top = rel.split("/")[0];
-            if (!SEED_TOP_LEVEL_ALLOWLIST.has(top))
+            if (!allowlist.has(top))
                 return;
-            const absDst = join(opts.repoRoot, rel);
+            const absDst = seedDstPath(opts.repoRoot, rel);
             if (existsSync(absDst) && opts.force !== true) {
                 collisions.push(rel);
                 return;
@@ -78,6 +125,8 @@ export function seedCairnLayout(opts) {
             written.push(rel);
         },
     });
+    if (ghost)
+        addGitInfoExclude(opts.repoRoot);
     return { written_files: written, collisions };
 }
 /**

package/dist/init/seed.js.map

@@ -1 +1 @@
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+{"version":3,"file":"seed.js","sourceRoot":"","sources":["../../src/init/seed.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EACL,SAAS,EACT,UAAU,EACV,SAAS,EACT,YAAY,EACZ,QAAQ,EACR,aAAa,GACd,MAAM,SAAS,CAAC;AACjB,OAAO,EAAE,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AAC1C,OAAO,EAAE,aAAa,EAAE,MAAM,UAAU,CAAC;AACzC,OAAO,EAAE,QAAQ,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM,yBAAyB,CAAC;AAEpE,MAAM,IAAI,GAAG,OAAO,CAAC,aAAa,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC;AACrD;;;;;;;GAOG;AACH,MAAM,cAAc,GAClB,OAAO,iBAAiB,KAAK,WAAW,IAAI,iBAAiB;IAC3D,CAAC,CAAC,IAAI,CAAC,IAAI,EAAE,WAAW,CAAC;IACzB,CAAC,CAAC,IAAI,CAAC,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,WAAW,CAAC,CAAC;AAc1C;;;;;;;;;;;;;GAaG;AACH,MAAM,wBAAwB,GAAwB,IAAI,GAAG,CAAC;IAC5D,QAAQ;IACR,SAAS;IACT,SAAS;CACV,CAAC,CAAC;AAEH;;;;;GAKG;AACH,MAAM,oBAAoB,GAAwB,IAAI,GAAG,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC;AAEtE;;;;;;GAMG;AACH,SAAS,WAAW,CAAC,QAAgB,EAAE,GAAW;IAChD,MAAM,KAAK,GAAG,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC;IAC7B,IAAI,KAAK,CAAC,CAAC,CAAC,KAAK,QAAQ,EAAE,CAAC;QAC1B,OAAO,QAAQ,CAAC,QAAQ,EAAE,GAAG,KAAK,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;IAC/C,CAAC;IACD,OAAO,IAAI,CAAC,QAAQ,EAAE,GAAG,CAAC,CAAC;AAC7B,CAAC;AAED;;;;;GAKG;AACH,SAAS,iBAAiB,CAAC,QAAgB;IACzC,IAAI,CAAC;QACH,MAAM,MAAM,GAAG,IAAI,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC;QACtC,IAAI,CAAC,UAAU,CAAC,MAAM,CAAC,IAAI,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC,WAAW,EAAE;YAAE,OAAO;QACnE,MAAM,OAAO,GAAG,IAAI,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;QACrC,SAAS,CAAC,OAAO,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;QACxC,MAAM,WAAW,GAAG,IAAI,CAAC,OAAO,EAAE,SAAS,CAAC,CAAC;QAC7C,MAAM,QAAQ,GAAG,UAAU,CAAC,WAAW,CAAC,CAAC,CAAC,CAAC,YAAY,CAAC,WAAW,EAAE,MAAM,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC;QAClF,IAAI,wBAAwB,CAAC,IAAI,CAAC,QAAQ,CAAC;YAAE,OAAO,CAAC,mBAAmB;QACxE,MAAM,GAAG,GAAG,QAAQ,CAAC,MAAM,GAAG,CAAC,IAAI,CAAC,QAAQ,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC;QACxE,aAAa,CAAC,WAAW,EAAE,GAAG,QAAQ,GAAG,GAAG,YAAY,EAAE,MAAM,CAAC,CAAC;IACpE,CAAC;IAAC,MAAM,CAAC;QACP,gEAAgE;IAClE,CAAC;AACH,CAAC;AAED,MAAM,UAAU,eAAe,CAAC,IAAiB;IAC/C,MAAM,OAAO,GAAa,EAAE,CAAC;IAC7B,MAAM,UAAU,GAAa,EAAE,CAAC;IAChC,MAAM,KAAK,GAAG,OAAO,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;IACrC,MAAM,SAAS,GAAG,KAAK,CAAC,CAAC,CAAC,oBAAoB,CAAC,CAAC,CAAC,wBAAwB,CAAC;IAC1E,MAAM,CAAC;QACL,GAAG,EAAE,cAAc;QACnB,KAAK,EAAE,CAAC,GAAG,EAAE,EAAE;YACb,IAAI,GAAG,KAAK,GAAG;gBAAE,OAAO,IAAI,CAAC;YAC7B,MAAM,GAAG,GAAG,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,CAAE,CAAC;YAC/B,OAAO,SAAS,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC;QAC5B,CAAC;QACD,MAAM,EAAE,CAAC,GAAG,EAAE,MAAM,EAAE,EAAE;YACtB,MAAM,GAAG,GAAG,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,CAAE,CAAC;YAC/B,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,GAAG,CAAC;gBAAE,OAAO;YAEhC,MAAM,MAAM,GAAG,WAAW,CAAC,IAAI,CAAC,QAAQ,EAAE,GAAG,CAAC,CAAC;YAC/C,IAAI,UAAU,CAAC,MAAM,CAAC,IAAI,IAAI,CAAC,KAAK,KAAK,IAAI,EAAE,CAAC;gBAC9C,UAAU,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;gBACrB,OAAO;YACT,CAAC;YACD,SAAS,CAAC,OAAO,CAAC,MAAM,CAAC,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;YAChD,MAAM,GAAG,GAAG,YAAY,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;YACzC,MAAM,GAAG,GAAG,iBAAiB,CAAC,EAAE,OAAO,EAAE,GAAG,EAAE,WAAW,EAAE,IAAI,CAAC,WAAW,EAAE,OAAO,EAAE,GAAG,EAAE,CAAC,CAAC;YAC7F,aAAa,CAAC,MAAM,EAAE,GAAG,EAAE,MAAM,CAAC,CAAC;YACnC,IAAI,oBAAoB,CAAC,GAAG,CAAC,EAAE,CAAC;gBAC9B,IAAI,CAAC;oBACH,SAAS,CAAC,MAAM,EAAE,KAAK,CAAC,CAAC;gBAC3B,CAAC;gBAAC,MAAM,CAAC;oBACP,mEAAmE;oBACnE,kEAAkE;oBAClE,sDAAsD;gBACxD,CAAC;YACH,CAAC;YACD,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;QACpB,CAAC;KACF,CAAC,CAAC;IACH,IAAI,KAAK;QAAE,iBAAiB,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;IAC5C,OAAO,EAAE,aAAa,EAAE,OAAO,EAAE,UAAU,EAAE,CAAC;AAChD,CAAC;AAED;;;;;;;;;;;;;GAaG;AACH,SAAS,iBAAiB,CAAC,IAI1B;IACC,oEAAoE;IACpE,MAAM,IAAI,GAAG,IAAI,CAAC,OAAO,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;IAChD,IACE,IAAI,KAAK,2BAA2B;QACpC,IAAI,KAAK,4BAA4B,EACrC,CAAC;QACD,OAAO,IAAI,CAAC,OAAO,CAAC;IACtB,CAAC;IACD,OAAO,IAAI,CAAC,OAAO;SAChB,OAAO,CAAC,kBAAkB,EAAE,GAAG,IAAI,CAAC,WAAW,GAAG,CAAC;SACnD,OAAO,CAAC,mBAAmB,EAAE,KAAK,IAAI,CAAC,WAAW,IAAI,CAAC;SACvD,OAAO,CAAC,iBAAiB,EAAE,IAAI,CAAC,WAAW,CAAC,CAAC;AAClD,CAAC;AAED,2EAA2E;AAC3E,MAAM,UAAU,aAAa;IAC3B,OAAO,cAAc,CAAC;AACxB,CAAC;AAED;;;;GAIG;AACH,SAAS,oBAAoB,CAAC,GAAW;IACvC,MAAM,IAAI,GAAG,GAAG,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;IACvC,OAAO,CACL,IAAI,KAAK,6BAA6B;QACtC,IAAI,KAAK,8BAA8B;QACvC,IAAI,KAAK,6BAA6B,CACvC,CAAC;AACJ,CAAC"}

package/dist/init/source-comments/strip-replace.d.ts

@@ -28,7 +28,6 @@ export interface ReplaceItem {
     /**
      * Replacement comment text. Caller composes per spec §15:
      *   - "// §INV-<hash>" for invariant cites
-     *   - "// TODO(TSK-<id>)" for active-task links
      *   - leave undefined (item omitted entirely) to skip stripping a block
      *
      * The replacer prepends the same leading indentation the original block had.

package/dist/init/source-comments/strip-replace.js

@@ -19,12 +19,28 @@
 import { execFileSync } from "node:child_process";
 import { copyFileSync, existsSync, mkdirSync, readFileSync, writeFileSync, } from "node:fs";
 import { dirname, join } from "node:path";
+import { cairnDir, isGhost } from "@isaacriehm/cairn-state";
 import { logger } from "../../logger.js";
 const log = logger("init.source-comments.strip-replace");
 /* -------------------------------------------------------------------------- */
 /* Public                                                                     */
 /* -------------------------------------------------------------------------- */
 export function applyStripReplace(args) {
+    // Ghost mode: never write `§DEC`/`§INV` cites (or any marker) into client
+    // source. Every cite path — Layer A align, Layer C drain, Layer D fix-align,
+    // attention-resolve, and the init source-comments pass — funnels through this
+    // one function, so a single no-op guard kills them all. Ledger emit is
+    // upstream and still runs: the DEC/INV graduates to ground with no source cite.
+    if (isGhost(args.repoRoot)) {
+        return {
+            files: [],
+            filesModified: 0,
+            filesSkipped: 0,
+            backupsWritten: [],
+            itemsApplied: 0,
+            itemsSkipped: args.items.length,
+        };
+    }
     const byFile = groupItemsByFile(args.items);
     const dirtyMap = computeDirtyMap(args.repoRoot, [...byFile.keys()]);
     const outcomes = [];
@@ -249,7 +265,7 @@ function leadingIndent(body, offset) {
 }
 function backupOriginal(repoRoot, relFile) {
     const backupRel = join(".cairn", "backups", "source", `${relFile}.original`);
-    const abs = join(repoRoot, backupRel);
+    const abs = cairnDir(repoRoot, "backups", "source", `${relFile}.original`);
     if (existsSync(abs)) {
         log.debug({ file: relFile, backup: backupRel }, "backup exists — skipping copy");
         return abs;

package/dist/init/source-comments/strip-replace.js.map

@@ -1 +1 @@
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package/dist/join/index.d.ts

@@ -54,12 +54,21 @@ export interface RunJoinArgs {
     strict?: boolean;
 }
 export declare function runJoin(args?: RunJoinArgs): JoinResult;
+export declare function writeCliPathFile(repoRoot: string): JoinStep;
 export interface InspectJoinStateArgs {
     repoRoot: string;
 }
 export interface JoinState {
     /** True when `git config core.hooksPath` reports `.cairn/git-hooks`. */
     hooksPathSet: boolean;
+    /**
+     * True when `core.hooksPath` is set to a NON-Cairn value (husky / lefthook /
+     * custom). A terminal state, not a not-yet-bootstrapped one: Cairn refuses to
+     * clobber it (§3.3 seam 5), so re-running join can never flip `hooksPathSet`.
+     * Callers use this to stop retrying the bootstrap and to surface the conflict
+     * instead of a false "hooks wired" banner.
+     */
+    hooksPathConflict: boolean;
     /** Raw value reported by git, or null when git failed / unset. */
     hooksPathValue: string | null;
     /** From `.cairn/config.yaml` — null if absent / unreadable. */

package/dist/join/index.js

@@ -21,12 +21,11 @@
 import { execFileSync } from "node:child_process";
 import { chmodSync, existsSync, mkdirSync, readFileSync, statSync, writeFileSync, } from "node:fs";
 import { dirname, join, resolve } from "node:path";
-import { parse as parseYaml } from "yaml";
 import { seedAttestedCommits } from "../hooks/seed-attested.js";
 import { VERSION } from "../index.js";
-import { logger } from "../logger.js";
 import { rebuildDerived } from "../state/rebuild-derived.js";
-const log = logger("join");
+import { readConfigPin } from "../migrate/config-io.js";
+import { cairnDir, cairnHooksPathForConfig, COMMITTED_HOOKS_PATH, } from "@isaacriehm/cairn-state";
 const HOOK_FILES = ["pre-commit", "post-commit", "commit-msg"];
 export function runJoin(args = {}) {
     const cwd = args.cwd ?? process.cwd();
@@ -87,7 +86,7 @@ export function runJoin(args = {}) {
             cliVersion: VERSION,
         };
     }
-    const hooksDir = join(repoRoot, ".cairn", "git-hooks");
+    const hooksDir = cairnDir(repoRoot, "git-hooks");
     if (!existsSync(hooksDir)) {
         steps.push({
             step: "set-hooks-path",
@@ -160,6 +159,8 @@ export function runJoin(args = {}) {
 function findCairnRoot(start) {
     let cur = resolve(start);
     for (let i = 0; i < 80; i++) {
+        // Repo-root discovery probe: physical in-repo `.cairn/` (committed mode).
+        // Literal join is intentional — ghost resolves via the global registry.
         if (existsSync(join(cur, ".cairn")))
             return cur;
         const parent = dirname(cur);
@@ -169,19 +170,9 @@ function findCairnRoot(start) {
     }
     return null;
 }
+// Single `cairn_version` pin reader, shared with the migration runner + doctor.
 function readProjectVersion(repoRoot) {
-    const path = join(repoRoot, ".cairn", "config.yaml");
-    if (!existsSync(path))
-        return null;
-    try {
-        const parsed = parseYaml(readFileSync(path, "utf8"));
-        const v = parsed?.["cairn_version"];
-        return typeof v === "string" ? v : null;
-    }
-    catch (err) {
-        log.warn({ err: err instanceof Error ? err.message : String(err) }, "config.yaml unreadable");
-        return null;
-    }
+    return readConfigPin(repoRoot);
 }
 function setGitHooksPath(repoRoot) {
     if (!existsSync(join(repoRoot, ".git"))) {
@@ -191,16 +182,54 @@ function setGitHooksPath(repoRoot) {
             detail: "no .git/ at repoRoot — skipping git config (initialize git first?)",
         };
     }
+    // Committed: relative `.cairn/git-hooks` (tracked, portable per-clone).
+    // Ghost: the ABSOLUTE out-of-repo `<cairnHome>/git-hooks` — the hooks live
+    // outside the repo tree, so a relative path would not resolve. Local git
+    // config either way (never committed).
+    const hooksPathValue = cairnHooksPathForConfig(repoRoot);
+    // ── Clobber guard ──────────────────────────────────────────────────────
+    // git allows exactly ONE core.hooksPath. If the client repo already points
+    // it somewhere that isn't Cairn's (husky, lefthook, a custom dir), blindly
+    // overwriting it silently disables the client's hooks for this operator.
+    // That's worst in ghost — the whole premise is leaving the client's setup
+    // untouched — but it's a latent hazard in committed mode too. Refuse +
+    // warn; never override. (Chaining the prior hook is a future enhancement;
+    // v1 hands the operator a clear remediation. ghost-mode design.)
+    const existing = readGitConfigValue(repoRoot, "core.hooksPath");
+    if (existing !== null &&
+        existing.length > 0 &&
+        !isCairnHooksPath(existing, repoRoot)) {
+        return {
+            step: "set-hooks-path",
+            status: "warn",
+            detail: `core.hooksPath already set to '${existing}' (husky/lefthook/custom hooks?) — ` +
+                `Cairn will NOT override it, so Cairn's git-hook sensor sweep is inactive ` +
+                `for this clone. To run both, chain '${existing}' into Cairn's hooks, or ` +
+                `clear core.hooksPath and re-run join.`,
+        };
+    }
     try {
-        execFileSync("git", ["config", "core.hooksPath", ".cairn/git-hooks"], {
+        execFileSync("git", ["config", "core.hooksPath", hooksPathValue], {
             cwd: repoRoot,
             encoding: "utf8",
             stdio: ["ignore", "pipe", "pipe"],
         });
+        // Soft conflict: husky is configured (`.husky/` present) but core.hooksPath
+        // was unset — a later `husky`/`npm install` resets it and clobbers Cairn's
+        // path. Cairn is wired now; warn so the operator chains proactively.
+        if (existsSync(join(repoRoot, ".husky"))) {
+            return {
+                step: "set-hooks-path",
+                status: "warn",
+                detail: `core.hooksPath = ${hooksPathValue} (set), but a .husky/ directory exists — ` +
+                    `a future husky install resets core.hooksPath and disables Cairn's hooks. ` +
+                    `Chain them to keep both active.`,
+            };
+        }
         return {
             step: "set-hooks-path",
             status: "ok",
-            detail: "core.hooksPath = .cairn/git-hooks",
+            detail: `core.hooksPath = ${hooksPathValue}`,
         };
     }
     catch (err) {
@@ -211,6 +240,17 @@ function setGitHooksPath(repoRoot) {
         };
     }
 }
+/**
+ * True when a `core.hooksPath` value is already Cairn's own. Committed stores
+ * the relative `.cairn/git-hooks`; ghost the absolute out-of-repo path
+ * (`cairnDir` yields exactly that, and `<repoRoot>/.cairn/git-hooks` in
+ * committed). Anything else is a foreign hooks path we must not clobber.
+ */
+function isCairnHooksPath(value, repoRoot) {
+    // Accept BOTH forms regardless of current mode — this is the clobber guard
+    // asking "is this value one of ours?", not "is it wired for this mode?"
+    return value === COMMITTED_HOOKS_PATH || value === cairnDir(repoRoot, "git-hooks");
+}
 function chmodHooks(hooksDir) {
     let okCount = 0;
     const failed = [];
@@ -239,7 +279,7 @@ function chmodHooks(hooksDir) {
         detail: `${okCount} hook${okCount === 1 ? "" : "s"} marked executable`,
     };
 }
-function writeCliPathFile(repoRoot) {
+export function writeCliPathFile(repoRoot) {
     const cliArgv = process.argv[1];
     if (typeof cliArgv !== "string" || cliArgv.length === 0) {
         return {
@@ -254,10 +294,20 @@ function writeCliPathFile(repoRoot) {
     // spaces anywhere in their home, or local-marketplace plugin caches
     // resolved through symlinked dev paths).
     const invocation = isModule ? `node "${cliArgv}"` : `"${cliArgv}"`;
-    const path = join(repoRoot, ".cairn", ".cli-path");
+    const path = cairnDir(repoRoot, ".cli-path");
+    const desired = `${invocation}\n`;
+    // SessionStart calls this every session, but the CLI invocation rarely
+    // changes — skip the mkdir + write when the file already matches (hot path).
     try {
-        mkdirSync(join(repoRoot, ".cairn"), { recursive: true });
-        writeFileSync(path, `${invocation}\n`, "utf8");
+        if (existsSync(path) && readFileSync(path, "utf8") === desired) {
+            return {
+                step: "write-cli-path",
+                status: "skipped",
+                detail: `cli invocation unchanged: ${invocation}`,
+            };
+        }
+        mkdirSync(cairnDir(repoRoot), { recursive: true });
+        writeFileSync(path, desired, "utf8");
     }
     catch (err) {
         return {
@@ -273,7 +323,7 @@ function writeCliPathFile(repoRoot) {
     };
 }
 function ensureSessionDir(repoRoot) {
-    const dir = join(repoRoot, ".cairn", "sessions");
+    const dir = cairnDir(repoRoot, "sessions");
     try {
         if (!existsSync(dir)) {
             mkdirSync(dir, { recursive: true });
@@ -301,12 +351,19 @@ export function inspectJoinState(args) {
     const repoRoot = args.repoRoot;
     const hooksPathValue = readGitConfigValue(repoRoot, "core.hooksPath");
     const projectCairnVersion = readProjectVersion(repoRoot);
+    // The value join would write for THIS repo's mode. `hooksPathSet` is the
+    // mode-exact check (is it wired for this mode?); `isCairnHooksPath` below is
+    // the mode-agnostic clobber guard (is it ours at all?) — kept distinct.
+    const expectedHooksPath = cairnHooksPathForConfig(repoRoot);
     return {
-        hooksPathSet: hooksPathValue === ".cairn/git-hooks",
+        hooksPathSet: hooksPathValue === expectedHooksPath,
+        hooksPathConflict: hooksPathValue !== null &&
+            hooksPathValue.length > 0 &&
+            !isCairnHooksPath(hooksPathValue, repoRoot),
         hooksPathValue,
         projectCairnVersion,
         versionMatches: projectCairnVersion === VERSION,
-        sessionsDirReady: existsSync(join(repoRoot, ".cairn", "sessions")),
+        sessionsDirReady: existsSync(cairnDir(repoRoot, "sessions")),
     };
 }
 function readGitConfigValue(repoRoot, key) {

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package/dist/lock.js

@@ -15,7 +15,8 @@
  *     deadlock and surface as timeout errors.
  */
 import { mkdir, open, readFile, unlink } from "node:fs/promises";
-import { dirname, join } from "node:path";
+import { dirname } from "node:path";
+import { cairnDir } from "@isaacriehm/cairn-state";
 const DEFAULT_TIMEOUT_MS = 30_000;
 const DEFAULT_POLL_MS = 50;
 /**
@@ -23,7 +24,7 @@ const DEFAULT_POLL_MS = 50;
  * success or error. Stale locks (holder PID is dead) are reclaimed.
  */
 export async function withWriteLock(repoRoot, fn, opts = {}) {
-    return withLockAtPath(join(repoRoot, ".cairn", ".write-lock"), fn, opts);
+    return withLockAtPath(cairnDir(repoRoot, ".write-lock"), fn, opts);
 }
 /**
  * Acquire a named operation lock (e.g. `.gc-lock`, `.audit-lock`) for the
@@ -32,7 +33,7 @@ export async function withWriteLock(repoRoot, fn, opts = {}) {
  * operation in progress".
  */
 export async function acquireOperationLock(repoRoot, lockName, fn) {
-    const lockPath = join(repoRoot, ".cairn", lockName);
+    const lockPath = cairnDir(repoRoot, lockName);
     await mkdir(dirname(lockPath), { recursive: true });
     const acquired = await tryAcquire(lockPath);
     if (!acquired) {

package/dist/lock.js.map

@@ -1 +1 @@
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+{"version":3,"file":"lock.js","sourceRoot":"","sources":["../src/lock.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;GAeG;AAEH,OAAO,EAAE,KAAK,EAAE,IAAI,EAAE,QAAQ,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAC;AACjE,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AACpC,OAAO,EAAE,QAAQ,EAAE,MAAM,yBAAyB,CAAC;AASnD,MAAM,kBAAkB,GAAG,MAAM,CAAC;AAClC,MAAM,eAAe,GAAG,EAAE,CAAC;AAE3B;;;GAGG;AACH,MAAM,CAAC,KAAK,UAAU,aAAa,CACjC,QAAgB,EAChB,EAAwB,EACxB,OAAwB,EAAE;IAE1B,OAAO,cAAc,CAAC,QAAQ,CAAC,QAAQ,EAAE,aAAa,CAAC,EAAE,EAAE,EAAE,IAAI,CAAC,CAAC;AACrE,CAAC;AAED;;;;;GAKG;AACH,MAAM,CAAC,KAAK,UAAU,oBAAoB,CACxC,QAAgB,EAChB,QAAgB,EAChB,EAAwB;IAExB,MAAM,QAAQ,GAAG,QAAQ,CAAC,QAAQ,EAAE,QAAQ,CAAC,CAAC;IAC9C,MAAM,KAAK,CAAC,OAAO,CAAC,QAAQ,CAAC,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;IACpD,MAAM,QAAQ,GAAG,MAAM,UAAU,CAAC,QAAQ,CAAC,CAAC;IAC5C,IAAI,CAAC,QAAQ,EAAE,CAAC;QACd,MAAM,IAAI,sBAAsB,CAAC,QAAQ,EAAE,MAAM,aAAa,CAAC,QAAQ,CAAC,CAAC,CAAC;IAC5E,CAAC;IACD,IAAI,CAAC;QACH,OAAO,MAAM,EAAE,EAAE,CAAC;IACpB,CAAC;YAAS,CAAC;QACT,MAAM,MAAM,CAAC,QAAQ,CAAC,CAAC,KAAK,CAAC,GAAG,EAAE,GAAE,CAAC,CAAC,CAAC;IACzC,CAAC;AACH,CAAC;AAED,MAAM,OAAO,sBAAuB,SAAQ,KAAK;IAE7B;IACA;IAFlB,YACkB,QAAgB,EAChB,SAAwB;QAExC,KAAK,CACH,kBAAkB,QAAQ,WAAW,SAAS,KAAK,IAAI,CAAC,CAAC,CAAC,WAAW,SAAS,EAAE,CAAC,CAAC,CAAC,EAAE,EAAE,CACxF,CAAC;QALc,aAAQ,GAAR,QAAQ,CAAQ;QAChB,cAAS,GAAT,SAAS,CAAe;QAKxC,IAAI,CAAC,IAAI,GAAG,wBAAwB,CAAC;IACvC,CAAC;CACF;AAED,KAAK,UAAU,cAAc,CAC3B,QAAgB,EAChB,EAAwB,EACxB,IAAqB;IAErB,MAAM,KAAK,CAAC,OAAO,CAAC,QAAQ,CAAC,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;IACpD,MAAM,SAAS,GAAG,IAAI,CAAC,SAAS,IAAI,kBAAkB,CAAC;IACvD,MAAM,MAAM,GAAG,IAAI,CAAC,MAAM,IAAI,eAAe,CAAC;IAC9C,MAAM,QAAQ,GAAG,IAAI,CAAC,GAAG,EAAE,GAAG,SAAS,CAAC;IAExC,mCAAmC;IACnC,OAAO,IAAI,EAAE,CAAC;QACZ,IAAI,MAAM,UAAU,CAAC,QAAQ,CAAC;YAAE,MAAM;QACtC,IAAI,MAAM,cAAc,CAAC,QAAQ,CAAC,EAAE,CAAC;YACnC,IAAI,MAAM,UAAU,CAAC,QAAQ,CAAC;gBAAE,MAAM;QACxC,CAAC;QACD,IAAI,IAAI,CAAC,GAAG,EAAE,IAAI,QAAQ,EAAE,CAAC;YAC3B,MAAM,MAAM,GAAG,MAAM,aAAa,CAAC,QAAQ,CAAC,CAAC;YAC7C,MAAM,IAAI,KAAK,CACb,4BAA4B,SAAS,KAAK,MAAM,KAAK,IAAI,CAAC,CAAC,CAAC,iBAAiB,MAAM,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAC9F,CAAC;QACJ,CAAC;QACD,MAAM,KAAK,CAAC,MAAM,CAAC,CAAC;IACtB,CAAC;IAED,IAAI,CAAC;QACH,OAAO,MAAM,EAAE,EAAE,CAAC;IACpB,CAAC;YAAS,CAAC;QACT,MAAM,MAAM,CAAC,QAAQ,CAAC,CAAC,KAAK,CAAC,GAAG,EAAE,GAAE,CAAC,CAAC,CAAC;IACzC,CAAC;AACH,CAAC;AAED,KAAK,UAAU,UAAU,CAAC,QAAgB;IACxC,IAAI,CAAC;QACH,MAAM,EAAE,GAAG,MAAM,IAAI,CAAC,QAAQ,EAAE,IAAI,CAAC,CAAC;QACtC,MAAM,EAAE,CAAC,KAAK,CAAC,GAAG,OAAO,CAAC,GAAG,IAAI,CAAC,CAAC;QACnC,MAAM,EAAE,CAAC,KAAK,EAAE,CAAC;QACjB,OAAO,IAAI,CAAC;IACd,CAAC;IAAC,OAAO,GAAG,EAAE,CAAC;QACb,IAAK,GAA6B,CAAC,IAAI,KAAK,QAAQ;YAAE,OAAO,KAAK,CAAC;QACnE,MAAM,GAAG,CAAC;IACZ,CAAC;AACH,CAAC;AAED,KAAK,UAAU,aAAa,CAAC,QAAgB;IAC3C,IAAI,CAAC;QACH,MAAM,IAAI,GAAG,MAAM,QAAQ,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC;QAC9C,MAAM,CAAC,GAAG,MAAM,CAAC,QAAQ,CAAC,IAAI,CAAC,IAAI,EAAE,EAAE,EAAE,CAAC,CAAC;QAC3C,OAAO,MAAM,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC;IACvC,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,IAAI,CAAC;IACd,CAAC;AACH,CAAC;AAED,KAAK,UAAU,cAAc,CAAC,QAAgB;IAC5C,MAAM,GAAG,GAAG,MAAM,aAAa,CAAC,QAAQ,CAAC,CAAC;IAC1C,IAAI,GAAG,KAAK,IAAI;QAAE,OAAO,KAAK,CAAC;IAC/B,IAAI,cAAc,CAAC,GAAG,CAAC;QAAE,OAAO,KAAK,CAAC;IACtC,MAAM,MAAM,CAAC,QAAQ,CAAC,CAAC,KAAK,CAAC,GAAG,EAAE,GAAE,CAAC,CAAC,CAAC;IACvC,OAAO,IAAI,CAAC;AACd,CAAC;AAED,SAAS,cAAc,CAAC,GAAW;IACjC,IAAI,CAAC;QACH,wDAAwD;QACxD,OAAO,CAAC,IAAI,CAAC,GAAG,EAAE,CAAC,CAAC,CAAC;QACrB,OAAO,IAAI,CAAC;IACd,CAAC;IAAC,OAAO,GAAG,EAAE,CAAC;QACb,IAAI,GAAG,YAAY,KAAK,IAAI,MAAM,IAAI,GAAG,IAAI,GAAG,CAAC,IAAI,KAAK,OAAO,EAAE,CAAC;YAClE,OAAO,IAAI,CAAC;QACd,CAAC;QACD,OAAO,KAAK,CAAC;IACf,CAAC;AACH,CAAC;AAED,SAAS,KAAK,CAAC,EAAU;IACvB,OAAO,IAAI,OAAO,CAAC,CAAC,OAAO,EAAE,EAAE,CAAC,UAAU,CAAC,OAAO,EAAE,EAAE,CAAC,CAAC,CAAC;AAC3D,CAAC"}

package/dist/mcp/bootstrap-guard.js

@@ -26,6 +26,7 @@ import { join } from "node:path";
 import { inspectJoinState, runJoin } from "../join/index.js";
 import { logger } from "../logger.js";
 import { mcpError } from "./errors.js";
+import { cairnDir } from "@isaacriehm/cairn-state";
 const log = logger("mcp.bootstrap-guard");
 /**
  * The guard only blocks when *all three* are true:
@@ -45,11 +46,19 @@ const log = logger("mcp.bootstrap-guard");
 export function requireBootstrap(repoRoot) {
     if (!existsSync(join(repoRoot, ".git")))
         return null;
-    if (!existsSync(join(repoRoot, ".cairn", "config.yaml")))
+    if (!existsSync(cairnDir(repoRoot, "config.yaml")))
         return null;
     const state = inspectJoinState({ repoRoot });
     if (state.hooksPathSet)
         return null;
+    // A foreign `core.hooksPath` (husky / lefthook / custom) is a terminal
+    // state — Cairn refuses to clobber it (§3.3 seam 5), so re-running join can
+    // never wire the hooks. Don't block MCP writes (decision capture, etc.) or
+    // thrash a full join on every write; Cairn runs in advisory mode, only the
+    // local git-hook sensor sweep is inactive. The SessionStart banner surfaces
+    // the conflict + remediation.
+    if (state.hooksPathConflict)
+        return null;
     // Lazy bootstrap: SessionStart's auto-join didn't run for this session
     // (most commonly: teammate installed the plugin mid-session via
     // `/plugin install`, so the plugin SessionStart hook never fired).

package/dist/mcp/bootstrap-guard.js.map

@@ -1 +1 @@
-{"version":3,"file":"bootstrap-guard.js","sourceRoot":"","sources":["../../src/mcp/bootstrap-guard.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;GAsBG;AAEH,OAAO,EAAE,UAAU,EAAE,MAAM,SAAS,CAAC;AACrC,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AACjC,OAAO,EAAE,gBAAgB,EAAE,OAAO,EAAE,MAAM,kBAAkB,CAAC;AAC7D,OAAO,EAAE,MAAM,EAAE,MAAM,cAAc,CAAC;AACtC,OAAO,EAAE,QAAQ,EAAwB,MAAM,aAAa,CAAC;AAE7D,MAAM,GAAG,GAAG,MAAM,CAAC,qBAAqB,CAAC,CAAC;AAE1C;;;;;;;;;;;;;;GAcG;AACH,MAAM,UAAU,gBAAgB,CAAC,QAAgB;IAC/C,IAAI,CAAC,UAAU,CAAC,IAAI,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC;QAAE,OAAO,IAAI,CAAC;IACrD,IAAI,CAAC,UAAU,CAAC,IAAI,CAAC,QAAQ,EAAE,QAAQ,EAAE,aAAa,CAAC,CAAC;QAAE,OAAO,IAAI,CAAC;IACtE,MAAM,KAAK,GAAG,gBAAgB,CAAC,EAAE,QAAQ,EAAE,CAAC,CAAC;IAC7C,IAAI,KAAK,CAAC,YAAY;QAAE,OAAO,IAAI,CAAC;IAEpC,uEAAuE;IACvE,gEAAgE;IAChE,mEAAmE;IACnE,oEAAoE;IACpE,8CAA8C;IAC9C,MAAM,UAAU,GAAG,OAAO,CAAC,EAAE,QAAQ,EAAE,CAAC,CAAC;IACzC,IAAI,UAAU,CAAC,YAAY,EAAE,CAAC;QAC5B,GAAG,CAAC,IAAI,CACN,EAAE,QAAQ,EAAE,MAAM,EAAE,oBAAoB,EAAE,EAC1C,+CAA+C,CAChD,CAAC;QACF,OAAO,IAAI,CAAC;IACd,CAAC;IACD,mEAAmE;IACnE,qEAAqE;IACrE,+CAA+C;IAC/C,MAAM,WAAW,GAAG,UAAU,CAAC,KAAK;SACjC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,MAAM,KAAK,OAAO,CAAC;SACnC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,GAAG,CAAC,CAAC,IAAI,KAAK,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC;IACxC,OAAO,QAAQ,CACb,oBAAoB,EACpB,gHAAgH,EAChH;QACE,qBAAqB,EAAE,KAAK,CAAC,mBAAmB;QAChD,gBAAgB,EAAE,KAAK,CAAC,cAAc;QACtC,kBAAkB,EAAE,KAAK,CAAC,gBAAgB;QAC1C,YAAY,EAAE,WAAW;QACzB,WAAW,EACT,+HAA+H;KAClI,CACF,CAAC;AACJ,CAAC"}
+{"version":3,"file":"bootstrap-guard.js","sourceRoot":"","sources":["../../src/mcp/bootstrap-guard.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;GAsBG;AAEH,OAAO,EAAE,UAAU,EAAE,MAAM,SAAS,CAAC;AACrC,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AACjC,OAAO,EAAE,gBAAgB,EAAE,OAAO,EAAE,MAAM,kBAAkB,CAAC;AAC7D,OAAO,EAAE,MAAM,EAAE,MAAM,cAAc,CAAC;AACtC,OAAO,EAAE,QAAQ,EAAwB,MAAM,aAAa,CAAC;AAC7D,OAAO,EAAE,QAAQ,EAAE,MAAM,yBAAyB,CAAC;AAEnD,MAAM,GAAG,GAAG,MAAM,CAAC,qBAAqB,CAAC,CAAC;AAE1C;;;;;;;;;;;;;;GAcG;AACH,MAAM,UAAU,gBAAgB,CAAC,QAAgB;IAC/C,IAAI,CAAC,UAAU,CAAC,IAAI,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC;QAAE,OAAO,IAAI,CAAC;IACrD,IAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,QAAQ,EAAE,aAAa,CAAC,CAAC;QAAE,OAAO,IAAI,CAAC;IAChE,MAAM,KAAK,GAAG,gBAAgB,CAAC,EAAE,QAAQ,EAAE,CAAC,CAAC;IAC7C,IAAI,KAAK,CAAC,YAAY;QAAE,OAAO,IAAI,CAAC;IAEpC,uEAAuE;IACvE,4EAA4E;IAC5E,2EAA2E;IAC3E,2EAA2E;IAC3E,4EAA4E;IAC5E,8BAA8B;IAC9B,IAAI,KAAK,CAAC,iBAAiB;QAAE,OAAO,IAAI,CAAC;IAEzC,uEAAuE;IACvE,gEAAgE;IAChE,mEAAmE;IACnE,oEAAoE;IACpE,8CAA8C;IAC9C,MAAM,UAAU,GAAG,OAAO,CAAC,EAAE,QAAQ,EAAE,CAAC,CAAC;IACzC,IAAI,UAAU,CAAC,YAAY,EAAE,CAAC;QAC5B,GAAG,CAAC,IAAI,CACN,EAAE,QAAQ,EAAE,MAAM,EAAE,oBAAoB,EAAE,EAC1C,+CAA+C,CAChD,CAAC;QACF,OAAO,IAAI,CAAC;IACd,CAAC;IACD,mEAAmE;IACnE,qEAAqE;IACrE,+CAA+C;IAC/C,MAAM,WAAW,GAAG,UAAU,CAAC,KAAK;SACjC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,MAAM,KAAK,OAAO,CAAC;SACnC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,GAAG,CAAC,CAAC,IAAI,KAAK,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC;IACxC,OAAO,QAAQ,CACb,oBAAoB,EACpB,gHAAgH,EAChH;QACE,qBAAqB,EAAE,KAAK,CAAC,mBAAmB;QAChD,gBAAgB,EAAE,KAAK,CAAC,cAAc;QACtC,kBAAkB,EAAE,KAAK,CAAC,gBAAgB;QAC1C,YAAY,EAAE,WAAW;QACzB,WAAW,EACT,+HAA+H;KAClI,CACF,CAAC;AACJ,CAAC"}

package/dist/mcp/schemas.d.ts

@@ -24,6 +24,28 @@ export declare const componentGetInput: {
     /** Optional workspace filter (monorepo). Omit for single-app. */
     workspace: z.ZodOptional<z.ZodString>;
 };
+export declare const componentRegisterInput: {
+    /** Repo-relative POSIX path of the component file. */
+    file: z.ZodString;
+    /** The export symbol being registered — the natural key + identity. */
+    export_name: z.ZodString;
+    /** The `@cairn <Name>` value (usually === export_name). */
+    name: z.ZodString;
+    category: z.ZodString;
+    purpose: z.ZodString;
+    aliases: z.ZodDefault<z.ZodArray<z.ZodString>>;
+    /** Owning workspace; omit / "" for single-app. */
+    workspace: z.ZodOptional<z.ZodString>;
+    singleton: z.ZodOptional<z.ZodBoolean>;
+    status: z.ZodOptional<z.ZodString>;
+    uses: z.ZodOptional<z.ZodArray<z.ZodString>>;
+};
+export declare const componentReconfirmInput: {
+    /** Reconfirm a single file's component; omit to sweep every flagged unit. */
+    file: z.ZodOptional<z.ZodString>;
+    /** Hard cap on fresh Haiku calls this run; the rest stay flagged (deferred). */
+    cap: z.ZodOptional<z.ZodNumber>;
+};
 export declare const searchInput: {
     query: z.ZodString;
     scope: z.ZodOptional<z.ZodArray<z.ZodString>>;
@@ -125,6 +147,10 @@ export declare const retireInvariantInput: {
     id: z.ZodString;
     reason: z.ZodOptional<z.ZodString>;
 };
+export declare const migrateInput: {
+    /** Preview the pending review migrations without writing anything. */
+    dry_run: z.ZodOptional<z.ZodBoolean>;
+};
 export declare const resolveAttentionInput: {
     /**
      * Item id from the attention skill — DEC-<hash> for a draft, the