npm - @isaacriehm/cairn-core - Versions diffs - 0.21.0 → 0.22.0 - Mend

@isaacriehm/cairn-core 0.21.0 → 0.22.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (243) hide show

package/dist/.tsbuildinfo +1 -1
package/dist/align-undo/log.js +3 -2
package/dist/align-undo/log.js.map +1 -1
package/dist/attention/source-strip.js +2 -1
package/dist/attention/source-strip.js.map +1 -1
package/dist/components/emit.js +33 -6
package/dist/components/emit.js.map +1 -1
package/dist/components/freshness.d.ts +51 -0
package/dist/components/freshness.js +121 -0
package/dist/components/freshness.js.map +1 -0
package/dist/components/index.d.ts +4 -0
package/dist/components/index.js +2 -0
package/dist/components/index.js.map +1 -1
package/dist/components/reconfirm.d.ts +64 -0
package/dist/components/reconfirm.js +204 -0
package/dist/components/reconfirm.js.map +1 -0
package/dist/context/handoff-builder.js +3 -3
package/dist/context/handoff-builder.js.map +1 -1
package/dist/context/task-summary.js +2 -2
package/dist/context/task-summary.js.map +1 -1
package/dist/doctor/index.js +7 -7
package/dist/doctor/index.js.map +1 -1
package/dist/events/paths.js +2 -2
package/dist/events/paths.js.map +1 -1
package/dist/fix-align/sentinel.js +2 -3
package/dist/fix-align/sentinel.js.map +1 -1
package/dist/gc/attested-commits.js +2 -2
package/dist/gc/attested-commits.js.map +1 -1
package/dist/gc/canary.js +2 -3
package/dist/gc/canary.js.map +1 -1
package/dist/gc/citation-integrity.d.ts +2 -3
package/dist/gc/citation-integrity.js +2 -26
package/dist/gc/citation-integrity.js.map +1 -1
package/dist/gc/completion-integrity.js +4 -3
package/dist/gc/completion-integrity.js.map +1 -1
package/dist/gc/entity-orphan.js +60 -8
package/dist/gc/entity-orphan.js.map +1 -1
package/dist/gc/ghost-anchor.d.ts +57 -0
package/dist/gc/ghost-anchor.js +171 -0
package/dist/gc/ghost-anchor.js.map +1 -0
package/dist/gc/index.d.ts +2 -0
package/dist/gc/index.js +1 -0
package/dist/gc/index.js.map +1 -1
package/dist/gc/sweep.js +12 -0
package/dist/gc/sweep.js.map +1 -1
package/dist/gc/types.d.ts +1 -1
package/dist/hooks/bypass-detection.js +3 -2
package/dist/hooks/bypass-detection.js.map +1 -1
package/dist/hooks/defer.js +3 -2
package/dist/hooks/defer.js.map +1 -1
package/dist/hooks/ghost-backup.d.ts +37 -0
package/dist/hooks/ghost-backup.js +82 -0
package/dist/hooks/ghost-backup.js.map +1 -0
package/dist/hooks/post-tool-use/allowlist-reader.js +2 -2
package/dist/hooks/post-tool-use/allowlist-reader.js.map +1 -1
package/dist/hooks/post-tool-use/ask-user-blocked.js +2 -2
package/dist/hooks/post-tool-use/ask-user-blocked.js.map +1 -1
package/dist/hooks/post-tool-use/citation-scanner.d.ts +8 -6
package/dist/hooks/post-tool-use/citation-scanner.js +9 -14
package/dist/hooks/post-tool-use/citation-scanner.js.map +1 -1
package/dist/hooks/post-tool-use/legend-builder.d.ts +2 -2
package/dist/hooks/post-tool-use/legend-builder.js +1 -19
package/dist/hooks/post-tool-use/legend-builder.js.map +1 -1
package/dist/hooks/post-tool-use/post-write.js +18 -1
package/dist/hooks/post-tool-use/post-write.js.map +1 -1
package/dist/hooks/post-tool-use/read-enricher.d.ts +2 -2
package/dist/hooks/post-tool-use/read-enricher.js +4 -6
package/dist/hooks/post-tool-use/read-enricher.js.map +1 -1
package/dist/hooks/post-tool-use/sot-align.js +29 -3
package/dist/hooks/post-tool-use/sot-align.js.map +1 -1
package/dist/hooks/post-tool-use/write-guardian.js +4 -4
package/dist/hooks/post-tool-use/write-guardian.js.map +1 -1
package/dist/hooks/runners/context-threshold.js +3 -3
package/dist/hooks/runners/context-threshold.js.map +1 -1
package/dist/hooks/runners/payload.js +2 -1
package/dist/hooks/runners/payload.js.map +1 -1
package/dist/hooks/runners/phase-ready-surface.js +3 -2
package/dist/hooks/runners/phase-ready-surface.js.map +1 -1
package/dist/hooks/runners/session-start.js +42 -3
package/dist/hooks/runners/session-start.js.map +1 -1
package/dist/hooks/runners/stop.js +26 -12
package/dist/hooks/runners/stop.js.map +1 -1
package/dist/hooks/runners/user-prompt-submit.d.ts +2 -2
package/dist/hooks/runners/user-prompt-submit.js +4 -9
package/dist/hooks/runners/user-prompt-submit.js.map +1 -1
package/dist/hooks/seed-attested.js +3 -2
package/dist/hooks/seed-attested.js.map +1 -1
package/dist/index.d.ts +3 -0
package/dist/index.js +2 -0
package/dist/index.js.map +1 -1
package/dist/init/baseline-audit.js +3 -3
package/dist/init/baseline-audit.js.map +1 -1
package/dist/init/claude-rule.js +13 -1
package/dist/init/claude-rule.js.map +1 -1
package/dist/init/curator/corpus.d.ts +1 -0
package/dist/init/curator/corpus.js +6 -2
package/dist/init/curator/corpus.js.map +1 -1
package/dist/init/curator/emit.js +2 -3
package/dist/init/curator/emit.js.map +1 -1
package/dist/init/detect-components.js +2 -2
package/dist/init/detect-components.js.map +1 -1
package/dist/init/eta-calibration.js +2 -2
package/dist/init/eta-calibration.js.map +1 -1
package/dist/init/index.d.ts +1 -1
package/dist/init/index.js +1 -1
package/dist/init/index.js.map +1 -1
package/dist/init/init.d.ts +8 -0
package/dist/init/init.js +16 -6
package/dist/init/init.js.map +1 -1
package/dist/init/mapper.js +2 -2
package/dist/init/mapper.js.map +1 -1
package/dist/init/multi-dev/install.js +24 -0
package/dist/init/multi-dev/install.js.map +1 -1
package/dist/init/phases/11-baseline.js +1 -1
package/dist/init/phases/11-baseline.js.map +1 -1
package/dist/init/phases/4-seed.js +7 -5
package/dist/init/phases/4-seed.js.map +1 -1
package/dist/init/phases/9a-walker.js +4 -0
package/dist/init/phases/9a-walker.js.map +1 -1
package/dist/init/phases/9b-curate.d.ts +1 -0
package/dist/init/phases/9b-curate.js +6 -2
package/dist/init/phases/9b-curate.js.map +1 -1
package/dist/init/phases/9d-comp-walk.js +2 -2
package/dist/init/phases/9d-comp-walk.js.map +1 -1
package/dist/init/phases/9e-comp-annotate.js +63 -3
package/dist/init/phases/9e-comp-annotate.js.map +1 -1
package/dist/init/phases/index.d.ts +0 -1
package/dist/init/phases/index.js +0 -1
package/dist/init/phases/index.js.map +1 -1
package/dist/init/phases/mapper-output-io.d.ts +1 -1
package/dist/init/phases/mapper-output-io.js +3 -2
package/dist/init/phases/mapper-output-io.js.map +1 -1
package/dist/init/phases/state-io.d.ts +1 -1
package/dist/init/phases/state-io.js +3 -2
package/dist/init/phases/state-io.js.map +1 -1
package/dist/init/phases/types.d.ts +20 -8
package/dist/init/phases/types.js +0 -1
package/dist/init/phases/types.js.map +1 -1
package/dist/init/progress.d.ts +1 -0
package/dist/init/progress.js +3 -1
package/dist/init/progress.js.map +1 -1
package/dist/init/rules-merge/ingest.js +3 -3
package/dist/init/rules-merge/ingest.js.map +1 -1
package/dist/init/seed.js +54 -5
package/dist/init/seed.js.map +1 -1
package/dist/init/source-comments/strip-replace.d.ts +0 -1
package/dist/init/source-comments/strip-replace.js +17 -1
package/dist/init/source-comments/strip-replace.js.map +1 -1
package/dist/join/index.d.ts +9 -0
package/dist/join/index.js +82 -25
package/dist/join/index.js.map +1 -1
package/dist/lock.js +4 -3
package/dist/lock.js.map +1 -1
package/dist/mcp/bootstrap-guard.js +10 -1
package/dist/mcp/bootstrap-guard.js.map +1 -1
package/dist/mcp/schemas.d.ts +22 -0
package/dist/mcp/schemas.js +22 -0
package/dist/mcp/schemas.js.map +1 -1
package/dist/mcp/server.js +3 -3
package/dist/mcp/server.js.map +1 -1
package/dist/mcp/telemetry.js +4 -3
package/dist/mcp/telemetry.js.map +1 -1
package/dist/mcp/tools/component-reconfirm.d.ts +7 -0
package/dist/mcp/tools/component-reconfirm.js +39 -0
package/dist/mcp/tools/component-reconfirm.js.map +1 -0
package/dist/mcp/tools/component-register.d.ts +15 -0
package/dist/mcp/tools/component-register.js +65 -0
package/dist/mcp/tools/component-register.js.map +1 -0
package/dist/mcp/tools/index.js +5 -0
package/dist/mcp/tools/index.js.map +1 -1
package/dist/mcp/tools/init-phases.d.ts +2 -0
package/dist/mcp/tools/init-phases.js +21 -5
package/dist/mcp/tools/init-phases.js.map +1 -1
package/dist/mcp/tools/mission-advance.js +5 -5
package/dist/mcp/tools/mission-advance.js.map +1 -1
package/dist/mcp/tools/mission-resume.js +3 -3
package/dist/mcp/tools/mission-resume.js.map +1 -1
package/dist/mcp/tools/record-decision.js +11 -4
package/dist/mcp/tools/record-decision.js.map +1 -1
package/dist/mcp/tools/resolve-attention.js +20 -4
package/dist/mcp/tools/resolve-attention.js.map +1 -1
package/dist/mcp/tools/resume.js +3 -2
package/dist/mcp/tools/resume.js.map +1 -1
package/dist/mcp/tools/search.js +2 -2
package/dist/mcp/tools/search.js.map +1 -1
package/dist/mcp/tools/task-complete.js +2 -3
package/dist/mcp/tools/task-complete.js.map +1 -1
package/dist/mcp/tools/task-create.js +2 -2
package/dist/mcp/tools/task-create.js.map +1 -1
package/dist/migrate/config-io.d.ts +10 -2
package/dist/migrate/config-io.js +21 -19
package/dist/migrate/config-io.js.map +1 -1
package/dist/migrate/gitignore.d.ts +28 -0
package/dist/migrate/gitignore.js +82 -0
package/dist/migrate/gitignore.js.map +1 -0
package/dist/migrate/index.d.ts +1 -0
package/dist/migrate/index.js +1 -0
package/dist/migrate/index.js.map +1 -1
package/dist/migrate/migrations/0001-drop-dead-config-fields.js +2 -2
package/dist/migrate/migrations/0001-drop-dead-config-fields.js.map +1 -1
package/dist/migrate/migrations/0002-backfill-gitignore.d.ts +14 -0
package/dist/migrate/migrations/0002-backfill-gitignore.js +40 -0
package/dist/migrate/migrations/0002-backfill-gitignore.js.map +1 -0
package/dist/migrate/registry.js +2 -1
package/dist/migrate/registry.js.map +1 -1
package/dist/migrate/runner.js +17 -10
package/dist/migrate/runner.js.map +1 -1
package/dist/migrate/types.d.ts +10 -2
package/dist/missions/task-link.js +4 -5
package/dist/missions/task-link.js.map +1 -1
package/dist/paths/index.d.ts +12 -1
package/dist/paths/index.js +17 -3
package/dist/paths/index.js.map +1 -1
package/dist/sensors/catalog.js +3 -3
package/dist/sensors/catalog.js.map +1 -1
package/dist/session-start/build.js +31 -16
package/dist/session-start/build.js.map +1 -1
package/dist/status-line/event-queue.js +2 -1
package/dist/status-line/event-queue.js.map +1 -1
package/dist/status-line/reader.js +5 -5
package/dist/status-line/reader.js.map +1 -1
package/dist/status-line/writer.js +2 -1
package/dist/status-line/writer.js.map +1 -1
package/dist/tasks/lifecycle.js +10 -9
package/dist/tasks/lifecycle.js.map +1 -1
package/dist/trace/index.js +2 -2
package/dist/trace/index.js.map +1 -1
package/dist/update-check.d.ts +28 -0
package/dist/update-check.js +137 -0
package/dist/update-check.js.map +1 -0
package/package.json +2 -2
package/templates/.cairn/git-hooks/commit-msg +33 -5
package/templates/.cairn/git-hooks/post-commit +13 -3
package/templates/.cairn/git-hooks/pre-commit +48 -25
package/dist/hooks/read-enrich.d.ts +0 -6
package/dist/hooks/read-enrich.js +0 -11
package/dist/hooks/read-enrich.js.map +0 -1
package/dist/hooks/write-guard.d.ts +0 -6
package/dist/hooks/write-guard.js +0 -11
package/dist/hooks/write-guard.js.map +0 -1
package/dist/init/phases/12-strip.d.ts +0 -10
package/dist/init/phases/12-strip.js +0 -88
package/dist/init/phases/12-strip.js.map +0 -1

package/dist/init/rules-merge/ingest.js CHANGED Viewed

@@ -37,7 +37,7 @@ import { existsSync, mkdirSync, readFileSync, writeFileSync } from "node:fs";
 import { dirname, join } from "node:path";
 import { stringify as stringifyYaml } from "yaml";
 import { runClaude } from "../../claude/index.js";
-import { conflictsDir, emptyAnchorMap, emptySotBindings, emptySotCache, emptyTopicIndex, readAnchorMap, readSotBindings, readSotCache, readTopicIndex, setSotCacheEntry, topicSlug, writeAnchorMap, writeSotBindings, writeSotCache, writeTopicIndex, writeDecisionsLedger, writeInvariantsLedger, } from "@isaacriehm/cairn-state";
+import { cairnDir, conflictsDir, emptyAnchorMap, emptySotBindings, emptySotCache, emptyTopicIndex, readAnchorMap, readSotBindings, readSotCache, readTopicIndex, setSotCacheEntry, topicSlug, writeAnchorMap, writeSotBindings, writeSotCache, writeTopicIndex, writeDecisionsLedger, writeInvariantsLedger, } from "@isaacriehm/cairn-state";
 import { logger } from "../../logger.js";
 import { jaccard, tokenize } from "../../text/jaccard.js";
 import { emitFromTopicIndex } from "../sot-emit.js";
@@ -558,8 +558,8 @@ function writeConflictFile(args) {
 function readEmittedBody(repoRoot, id) {
     const isDec = id.startsWith("DEC-");
     const dir = isDec
-        ? join(repoRoot, ".cairn", "ground", "decisions")
-        : join(repoRoot, ".cairn", "ground", "invariants");
+        ? cairnDir(repoRoot, "ground", "decisions")
+        : cairnDir(repoRoot, "ground", "invariants");
     const abs = join(dir, `${id}.md`);
     if (!existsSync(abs))
         return null;

package/dist/init/rules-merge/ingest.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/init/seed.js CHANGED Viewed

@@ -6,10 +6,10 @@
  * substitution are passed through `applyPlaceholders`. Existing files
  * collide-fail unless `force: true`.
  */
-import { chmodSync, existsSync, mkdirSync, readFileSync, writeFileSync, } from "node:fs";
+import { chmodSync, existsSync, mkdirSync, readFileSync, statSync, writeFileSync, } from "node:fs";
 import { dirname, join } from "node:path";
 import { fileURLToPath } from "node:url";
-import { walkFs } from "@isaacriehm/cairn-state";
+import { cairnDir, isGhost, walkFs } from "@isaacriehm/cairn-state";
 const HERE = dirname(fileURLToPath(import.meta.url));
 /**
  * dist/init/seed.js → walk up to package root, then into templates/.
@@ -41,22 +41,69 @@ const SEED_TOP_LEVEL_ALLOWLIST = new Set([
     ".claude",
     ".github",
 ]);
+/**
+ * Ghost mode seeds ONLY `.cairn/*` (redirected out-of-repo via `cairnDir`).
+ * The `.claude/` rule + `.github/` CI workflow templates are client-tree
+ * artifacts — never written in ghost (constraint 1: nothing Cairn-shaped in
+ * the client repo). See ghost-mode design.
+ */
+const GHOST_SEED_ALLOWLIST = new Set([".cairn"]);
+/**
+ * Resolve a template's repo-relative path to its on-disk destination.
+ * `.cairn/<rest>` routes through `cairnHome` — out-of-repo in ghost,
+ * `<repoRoot>/.cairn/<rest>` in committed (byte-identical to the old
+ * `join(repoRoot, rel)`). `.claude/`/`.github/` stay in the client tree
+ * (committed only — gated out of the ghost allowlist).
+ */
+function seedDstPath(repoRoot, rel) {
+    const parts = rel.split("/");
+    if (parts[0] === ".cairn") {
+        return cairnDir(repoRoot, ...parts.slice(1));
+    }
+    return join(repoRoot, rel);
+}
+/**
+ * Belt-and-suspenders for ghost: add `/.cairn/` to `.git/info/exclude` (local,
+ * untracked — never committed). Ghost writes nothing under the client tree, but
+ * a missed code path that emitted a stray `.cairn/` would still be git-invisible.
+ * Never touches the tracked `.gitignore`. Best-effort.
+ */
+function addGitInfoExclude(repoRoot) {
+    try {
+        const gitDir = join(repoRoot, ".git");
+        if (!existsSync(gitDir) || !statSync(gitDir).isDirectory())
+            return;
+        const infoDir = join(gitDir, "info");
+        mkdirSync(infoDir, { recursive: true });
+        const excludePath = join(infoDir, "exclude");
+        const existing = existsSync(excludePath) ? readFileSync(excludePath, "utf8") : "";
+        if (/^\s*\/?\.cairn\/?\s*$/m.test(existing))
+            return; // already excluded
+        const sep = existing.length > 0 && !existing.endsWith("\n") ? "\n" : "";
+        writeFileSync(excludePath, `${existing}${sep}/.cairn/\n`, "utf8");
+    }
+    catch {
+        // best-effort; a missing/locked .git/info never blocks adoption
+    }
+}
 export function seedCairnLayout(opts) {
     const written = [];
     const collisions = [];
+    const ghost = isGhost(opts.repoRoot);
+    const allowlist = ghost ? GHOST_SEED_ALLOWLIST : SEED_TOP_LEVEL_ALLOWLIST;
     walkFs({
         dir: TEMPLATES_ROOT,
         onDir: (rel) => {
             if (rel === ".")
                 return true;
             const top = rel.split("/")[0];
-            return SEED_TOP_LEVEL_ALLOWLIST.has(top);
+            return allowlist.has(top);
         },
         onFile: (rel, absSrc) => {
             const top = rel.split("/")[0];
-            if (!SEED_TOP_LEVEL_ALLOWLIST.has(top))
+            if (!allowlist.has(top))
                 return;
-            const absDst = join(opts.repoRoot, rel);
+            const absDst = seedDstPath(opts.repoRoot, rel);
             if (existsSync(absDst) && opts.force !== true) {
                 collisions.push(rel);
                 return;
@@ -78,6 +125,8 @@ export function seedCairnLayout(opts) {
             written.push(rel);
         },
     });
+    if (ghost)
+        addGitInfoExclude(opts.repoRoot);
     return { written_files: written, collisions };
 }
 /**

package/dist/init/seed.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/init/source-comments/strip-replace.d.ts CHANGED Viewed

@@ -28,7 +28,6 @@ export interface ReplaceItem {
     /**
      * Replacement comment text. Caller composes per spec §15:
      *   - "// §INV-<hash>" for invariant cites
-     *   - "// TODO(TSK-<id>)" for active-task links
      *   - leave undefined (item omitted entirely) to skip stripping a block
      *
      * The replacer prepends the same leading indentation the original block had.

package/dist/init/source-comments/strip-replace.js CHANGED Viewed

@@ -19,12 +19,28 @@
 import { execFileSync } from "node:child_process";
 import { copyFileSync, existsSync, mkdirSync, readFileSync, writeFileSync, } from "node:fs";
 import { dirname, join } from "node:path";
+import { cairnDir, isGhost } from "@isaacriehm/cairn-state";
 import { logger } from "../../logger.js";
 const log = logger("init.source-comments.strip-replace");
 /* -------------------------------------------------------------------------- */
 /* Public                                                                     */
 /* -------------------------------------------------------------------------- */
 export function applyStripReplace(args) {
+    // Ghost mode: never write `§DEC`/`§INV` cites (or any marker) into client
+    // source. Every cite path — Layer A align, Layer C drain, Layer D fix-align,
+    // attention-resolve, and the init source-comments pass — funnels through this
+    // one function, so a single no-op guard kills them all. Ledger emit is
+    // upstream and still runs: the DEC/INV graduates to ground with no source cite.
+    if (isGhost(args.repoRoot)) {
+        return {
+            files: [],
+            filesModified: 0,
+            filesSkipped: 0,
+            backupsWritten: [],
+            itemsApplied: 0,
+            itemsSkipped: args.items.length,
+        };
+    }
     const byFile = groupItemsByFile(args.items);
     const dirtyMap = computeDirtyMap(args.repoRoot, [...byFile.keys()]);
     const outcomes = [];
@@ -249,7 +265,7 @@ function leadingIndent(body, offset) {
 }
 function backupOriginal(repoRoot, relFile) {
     const backupRel = join(".cairn", "backups", "source", `${relFile}.original`);
-    const abs = join(repoRoot, backupRel);
+    const abs = cairnDir(repoRoot, "backups", "source", `${relFile}.original`);
     if (existsSync(abs)) {
         log.debug({ file: relFile, backup: backupRel }, "backup exists — skipping copy");
         return abs;

package/dist/init/source-comments/strip-replace.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/join/index.d.ts CHANGED Viewed

@@ -54,12 +54,21 @@ export interface RunJoinArgs {
     strict?: boolean;
 }
 export declare function runJoin(args?: RunJoinArgs): JoinResult;
+export declare function writeCliPathFile(repoRoot: string): JoinStep;
 export interface InspectJoinStateArgs {
     repoRoot: string;
 }
 export interface JoinState {
     /** True when `git config core.hooksPath` reports `.cairn/git-hooks`. */
     hooksPathSet: boolean;
+    /**
+     * True when `core.hooksPath` is set to a NON-Cairn value (husky / lefthook /
+     * custom). A terminal state, not a not-yet-bootstrapped one: Cairn refuses to
+     * clobber it (§3.3 seam 5), so re-running join can never flip `hooksPathSet`.
+     * Callers use this to stop retrying the bootstrap and to surface the conflict
+     * instead of a false "hooks wired" banner.
+     */
+    hooksPathConflict: boolean;
     /** Raw value reported by git, or null when git failed / unset. */
     hooksPathValue: string | null;
     /** From `.cairn/config.yaml` — null if absent / unreadable. */

package/dist/join/index.js CHANGED Viewed

@@ -21,12 +21,11 @@
 import { execFileSync } from "node:child_process";
 import { chmodSync, existsSync, mkdirSync, readFileSync, statSync, writeFileSync, } from "node:fs";
 import { dirname, join, resolve } from "node:path";
-import { parse as parseYaml } from "yaml";
 import { seedAttestedCommits } from "../hooks/seed-attested.js";
 import { VERSION } from "../index.js";
-import { logger } from "../logger.js";
 import { rebuildDerived } from "../state/rebuild-derived.js";
-const log = logger("join");
+import { readConfigPin } from "../migrate/config-io.js";
+import { cairnDir, cairnHooksPathForConfig, COMMITTED_HOOKS_PATH, } from "@isaacriehm/cairn-state";
 const HOOK_FILES = ["pre-commit", "post-commit", "commit-msg"];
 export function runJoin(args = {}) {
     const cwd = args.cwd ?? process.cwd();
@@ -87,7 +86,7 @@ export function runJoin(args = {}) {
             cliVersion: VERSION,
         };
     }
-    const hooksDir = join(repoRoot, ".cairn", "git-hooks");
+    const hooksDir = cairnDir(repoRoot, "git-hooks");
     if (!existsSync(hooksDir)) {
         steps.push({
             step: "set-hooks-path",
@@ -160,6 +159,8 @@ export function runJoin(args = {}) {
 function findCairnRoot(start) {
     let cur = resolve(start);
     for (let i = 0; i < 80; i++) {
+        // Repo-root discovery probe: physical in-repo `.cairn/` (committed mode).
+        // Literal join is intentional — ghost resolves via the global registry.
         if (existsSync(join(cur, ".cairn")))
             return cur;
         const parent = dirname(cur);
@@ -169,19 +170,9 @@ function findCairnRoot(start) {
     }
     return null;
 }
+// Single `cairn_version` pin reader, shared with the migration runner + doctor.
 function readProjectVersion(repoRoot) {
-    const path = join(repoRoot, ".cairn", "config.yaml");
-    if (!existsSync(path))
-        return null;
-    try {
-        const parsed = parseYaml(readFileSync(path, "utf8"));
-        const v = parsed?.["cairn_version"];
-        return typeof v === "string" ? v : null;
-    }
-    catch (err) {
-        log.warn({ err: err instanceof Error ? err.message : String(err) }, "config.yaml unreadable");
-        return null;
-    }
+    return readConfigPin(repoRoot);
 }
 function setGitHooksPath(repoRoot) {
     if (!existsSync(join(repoRoot, ".git"))) {
@@ -191,16 +182,54 @@ function setGitHooksPath(repoRoot) {
             detail: "no .git/ at repoRoot — skipping git config (initialize git first?)",
         };
     }
+    // Committed: relative `.cairn/git-hooks` (tracked, portable per-clone).
+    // Ghost: the ABSOLUTE out-of-repo `<cairnHome>/git-hooks` — the hooks live
+    // outside the repo tree, so a relative path would not resolve. Local git
+    // config either way (never committed).
+    const hooksPathValue = cairnHooksPathForConfig(repoRoot);
+    // ── Clobber guard ──────────────────────────────────────────────────────
+    // git allows exactly ONE core.hooksPath. If the client repo already points
+    // it somewhere that isn't Cairn's (husky, lefthook, a custom dir), blindly
+    // overwriting it silently disables the client's hooks for this operator.
+    // That's worst in ghost — the whole premise is leaving the client's setup
+    // untouched — but it's a latent hazard in committed mode too. Refuse +
+    // warn; never override. (Chaining the prior hook is a future enhancement;
+    // v1 hands the operator a clear remediation. ghost-mode design.)
+    const existing = readGitConfigValue(repoRoot, "core.hooksPath");
+    if (existing !== null &&
+        existing.length > 0 &&
+        !isCairnHooksPath(existing, repoRoot)) {
+        return {
+            step: "set-hooks-path",
+            status: "warn",
+            detail: `core.hooksPath already set to '${existing}' (husky/lefthook/custom hooks?) — ` +
+                `Cairn will NOT override it, so Cairn's git-hook sensor sweep is inactive ` +
+                `for this clone. To run both, chain '${existing}' into Cairn's hooks, or ` +
+                `clear core.hooksPath and re-run join.`,
+        };
+    }
     try {
-        execFileSync("git", ["config", "core.hooksPath", ".cairn/git-hooks"], {
+        execFileSync("git", ["config", "core.hooksPath", hooksPathValue], {
             cwd: repoRoot,
             encoding: "utf8",
             stdio: ["ignore", "pipe", "pipe"],
         });
+        // Soft conflict: husky is configured (`.husky/` present) but core.hooksPath
+        // was unset — a later `husky`/`npm install` resets it and clobbers Cairn's
+        // path. Cairn is wired now; warn so the operator chains proactively.
+        if (existsSync(join(repoRoot, ".husky"))) {
+            return {
+                step: "set-hooks-path",
+                status: "warn",
+                detail: `core.hooksPath = ${hooksPathValue} (set), but a .husky/ directory exists — ` +
+                    `a future husky install resets core.hooksPath and disables Cairn's hooks. ` +
+                    `Chain them to keep both active.`,
+            };
+        }
         return {
             step: "set-hooks-path",
             status: "ok",
-            detail: "core.hooksPath = .cairn/git-hooks",
+            detail: `core.hooksPath = ${hooksPathValue}`,
         };
     }
     catch (err) {
@@ -211,6 +240,17 @@ function setGitHooksPath(repoRoot) {
         };
     }
 }
+/**
+ * True when a `core.hooksPath` value is already Cairn's own. Committed stores
+ * the relative `.cairn/git-hooks`; ghost the absolute out-of-repo path
+ * (`cairnDir` yields exactly that, and `<repoRoot>/.cairn/git-hooks` in
+ * committed). Anything else is a foreign hooks path we must not clobber.
+ */
+function isCairnHooksPath(value, repoRoot) {
+    // Accept BOTH forms regardless of current mode — this is the clobber guard
+    // asking "is this value one of ours?", not "is it wired for this mode?"
+    return value === COMMITTED_HOOKS_PATH || value === cairnDir(repoRoot, "git-hooks");
+}
 function chmodHooks(hooksDir) {
     let okCount = 0;
     const failed = [];
@@ -239,7 +279,7 @@ function chmodHooks(hooksDir) {
         detail: `${okCount} hook${okCount === 1 ? "" : "s"} marked executable`,
     };
 }
-function writeCliPathFile(repoRoot) {
+export function writeCliPathFile(repoRoot) {
     const cliArgv = process.argv[1];
     if (typeof cliArgv !== "string" || cliArgv.length === 0) {
         return {
@@ -254,10 +294,20 @@ function writeCliPathFile(repoRoot) {
     // spaces anywhere in their home, or local-marketplace plugin caches
     // resolved through symlinked dev paths).
     const invocation = isModule ? `node "${cliArgv}"` : `"${cliArgv}"`;
-    const path = join(repoRoot, ".cairn", ".cli-path");
+    const path = cairnDir(repoRoot, ".cli-path");
+    const desired = `${invocation}\n`;
+    // SessionStart calls this every session, but the CLI invocation rarely
+    // changes — skip the mkdir + write when the file already matches (hot path).
     try {
-        mkdirSync(join(repoRoot, ".cairn"), { recursive: true });
-        writeFileSync(path, `${invocation}\n`, "utf8");
+        if (existsSync(path) && readFileSync(path, "utf8") === desired) {
+            return {
+                step: "write-cli-path",
+                status: "skipped",
+                detail: `cli invocation unchanged: ${invocation}`,
+            };
+        }
+        mkdirSync(cairnDir(repoRoot), { recursive: true });
+        writeFileSync(path, desired, "utf8");
     }
     catch (err) {
         return {
@@ -273,7 +323,7 @@ function writeCliPathFile(repoRoot) {
     };
 }
 function ensureSessionDir(repoRoot) {
-    const dir = join(repoRoot, ".cairn", "sessions");
+    const dir = cairnDir(repoRoot, "sessions");
     try {
         if (!existsSync(dir)) {
             mkdirSync(dir, { recursive: true });
@@ -301,12 +351,19 @@ export function inspectJoinState(args) {
     const repoRoot = args.repoRoot;
     const hooksPathValue = readGitConfigValue(repoRoot, "core.hooksPath");
     const projectCairnVersion = readProjectVersion(repoRoot);
+    // The value join would write for THIS repo's mode. `hooksPathSet` is the
+    // mode-exact check (is it wired for this mode?); `isCairnHooksPath` below is
+    // the mode-agnostic clobber guard (is it ours at all?) — kept distinct.
+    const expectedHooksPath = cairnHooksPathForConfig(repoRoot);
     return {
-        hooksPathSet: hooksPathValue === ".cairn/git-hooks",
+        hooksPathSet: hooksPathValue === expectedHooksPath,
+        hooksPathConflict: hooksPathValue !== null &&
+            hooksPathValue.length > 0 &&
+            !isCairnHooksPath(hooksPathValue, repoRoot),
         hooksPathValue,
         projectCairnVersion,
         versionMatches: projectCairnVersion === VERSION,
-        sessionsDirReady: existsSync(join(repoRoot, ".cairn", "sessions")),
+        sessionsDirReady: existsSync(cairnDir(repoRoot, "sessions")),
     };
 }
 function readGitConfigValue(repoRoot, key) {

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package/dist/lock.js CHANGED Viewed

@@ -15,7 +15,8 @@
  *     deadlock and surface as timeout errors.
  */
 import { mkdir, open, readFile, unlink } from "node:fs/promises";
-import { dirname, join } from "node:path";
+import { dirname } from "node:path";
+import { cairnDir } from "@isaacriehm/cairn-state";
 const DEFAULT_TIMEOUT_MS = 30_000;
 const DEFAULT_POLL_MS = 50;
 /**
@@ -23,7 +24,7 @@ const DEFAULT_POLL_MS = 50;
  * success or error. Stale locks (holder PID is dead) are reclaimed.
  */
 export async function withWriteLock(repoRoot, fn, opts = {}) {
-    return withLockAtPath(join(repoRoot, ".cairn", ".write-lock"), fn, opts);
+    return withLockAtPath(cairnDir(repoRoot, ".write-lock"), fn, opts);
 }
 /**
  * Acquire a named operation lock (e.g. `.gc-lock`, `.audit-lock`) for the
@@ -32,7 +33,7 @@ export async function withWriteLock(repoRoot, fn, opts = {}) {
  * operation in progress".
  */
 export async function acquireOperationLock(repoRoot, lockName, fn) {
-    const lockPath = join(repoRoot, ".cairn", lockName);
+    const lockPath = cairnDir(repoRoot, lockName);
     await mkdir(dirname(lockPath), { recursive: true });
     const acquired = await tryAcquire(lockPath);
     if (!acquired) {