@isaacriehm/cairn-core 0.13.2 → 0.14.0

package/dist/attention/bulk-accept.js

@@ -35,6 +35,7 @@ import { decisionsDir, invariantsDir } from "@isaacriehm/cairn-state";
 import { writeDecisionsLedger } from "@isaacriehm/cairn-state";
 import { parseFrontmatterRecord } from "@isaacriehm/cairn-state";
 import { withWriteLock } from "../lock.js";
+import { writeInvalidationEvent } from "../events/index.js";
 import { scoreDecDraft, scoreInvariant, } from "./scoring.js";
 import { runDecSourceStrip } from "./source-strip.js";
 /**
@@ -161,6 +162,24 @@ export async function bulkAcceptObvious(args) {
                                 }
                             }
                         }
+                        // Emit `decision_accepted` event per promoted draft so
+                        // cross-session listeners (Stop hook, scope-index rebuild)
+                        // see the new accepted DEC. Without this, bulk-accept's
+                        // 21-DEC batches were invisible to the event ledger and
+                        // downstream invalidation never fired.
+                        if (!dry) {
+                            try {
+                                writeInvalidationEvent(args.repoRoot, {
+                                    kind: "decision_accepted",
+                                    refs: [{ kind: "decision", id }],
+                                    path: `.cairn/ground/decisions/${id}.md`,
+                                    source: { session_id: null, tool: "cairn_bulk_accept_attention" },
+                                });
+                            }
+                            catch {
+                                /* best-effort */
+                            }
+                        }
                         decsAccepted += 1;
                         acceptedIds.push(id);
                     }

package/dist/attention/bulk-accept.js.map

@@ -1 +1 @@
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package/dist/gc/entity-orphan.d.ts

@@ -0,0 +1,55 @@
+/**
+ * GC pass — entity-orphan (ledger → code).
+ *
+ * The inverse of citation-integrity. Where citation-integrity walks
+ * code → ledger ("this §cite points at a missing entity"), this pass
+ * walks ledger → code ("does this DEC/INV still have a live home, or
+ * has it rotted?"). It is the detection half of the retirement
+ * subsystem; `runEntityRetire` (retire.ts) is the apply half.
+ *
+ * Orphan predicate — split by `sot_kind`:
+ *
+ *   - `ledger` (source-comment-derived) — the entity's home is a
+ *     strip-replaced `// §DEC-/§INV-` cite in source. Orphan when ZERO
+ *     live cites to its id remain anywhere in the tree. Classified:
+ *       · source_file also gone        → SAFE   (clean orphan)
+ *       · source_file still present     → ambiguous (cite vanished but
+ *                                          file remains — surface, don't
+ *                                          auto-retire)
+ *
+ *   - `path` (doc-backed) — the entity summarizes a doc section
+ *     (`sot_path`). Orphan when that file no longer exists → SAFE.
+ *     Body-vs-source drift while the file still exists is owned by the
+ *     doc-source-drift pass, not this one.
+ *
+ * Grace window: an entity younger than GRACE_DAYS (by `generated`) is
+ * skipped — a freshly-emitted entity's cite or doc may not have landed
+ * yet. Undated entities fall through to the predicate (the cite/source
+ * signal is the real guard).
+ *
+ * Only SAFE orphans are eligible for autonomous retirement; ambiguous
+ * ones surface as `warn` findings for operator/agent triage.
+ */
+import type { GcFinding } from "./types.js";
+export type OrphanClassification = "safe" | "ambiguous";
+export interface OrphanCandidate {
+    id: string;
+    kind: "DEC" | "INV";
+    sotKind: string;
+    classification: OrphanClassification;
+    /** Human-readable retirement reason — stamped into archived frontmatter. */
+    reason: string;
+    /** Repo-relative path to the live entity file. */
+    entityPath: string;
+}
+export interface EntityOrphanOptions {
+    repoRoot: string;
+    /** Override "now" for the grace-window check (tests). */
+    now?: Date;
+}
+export interface EntityOrphanResult {
+    findings: GcFinding[];
+    /** Structured candidates for the retire apply path. */
+    orphans: OrphanCandidate[];
+}
+export declare function runEntityOrphan(opts: EntityOrphanOptions): EntityOrphanResult;

package/dist/gc/entity-orphan.js

@@ -0,0 +1,171 @@
+/**
+ * GC pass — entity-orphan (ledger → code).
+ *
+ * The inverse of citation-integrity. Where citation-integrity walks
+ * code → ledger ("this §cite points at a missing entity"), this pass
+ * walks ledger → code ("does this DEC/INV still have a live home, or
+ * has it rotted?"). It is the detection half of the retirement
+ * subsystem; `runEntityRetire` (retire.ts) is the apply half.
+ *
+ * Orphan predicate — split by `sot_kind`:
+ *
+ *   - `ledger` (source-comment-derived) — the entity's home is a
+ *     strip-replaced `// §DEC-/§INV-` cite in source. Orphan when ZERO
+ *     live cites to its id remain anywhere in the tree. Classified:
+ *       · source_file also gone        → SAFE   (clean orphan)
+ *       · source_file still present     → ambiguous (cite vanished but
+ *                                          file remains — surface, don't
+ *                                          auto-retire)
+ *
+ *   - `path` (doc-backed) — the entity summarizes a doc section
+ *     (`sot_path`). Orphan when that file no longer exists → SAFE.
+ *     Body-vs-source drift while the file still exists is owned by the
+ *     doc-source-drift pass, not this one.
+ *
+ * Grace window: an entity younger than GRACE_DAYS (by `generated`) is
+ * skipped — a freshly-emitted entity's cite or doc may not have landed
+ * yet. Undated entities fall through to the predicate (the cite/source
+ * signal is the real guard).
+ *
+ * Only SAFE orphans are eligible for autonomous retirement; ambiguous
+ * ones surface as `warn` findings for operator/agent triage.
+ */
+import { existsSync, readdirSync, readFileSync } from "node:fs";
+import { join } from "node:path";
+import { decisionsDir, invariantsDir, parseFrontmatterRecord, } from "@isaacriehm/cairn-state";
+import { walkSourceTree } from "./walk-source.js";
+const PASS_ID = "entity-orphan";
+const GRACE_DAYS = 7;
+const GRACE_MS = GRACE_DAYS * 86_400_000;
+const INV_RE = /§INV-([0-9a-f]{7,})\b/g;
+const DEC_RE = /§DEC-([0-9a-f]{7,})\b/g;
+const SOURCE_EXTENSIONS = new Set([
+    ".ts", ".tsx", ".js", ".jsx", ".mjs", ".cjs",
+    ".py", ".rb", ".go", ".rs", ".java", ".c", ".cc", ".cpp", ".h", ".hpp",
+    ".swift", ".kt", ".sh", ".bash", ".zsh",
+    ".sql", ".html", ".vue", ".svelte", ".css", ".scss",
+]);
+function fileExt(path) {
+    const idx = path.lastIndexOf(".");
+    return idx === -1 ? "" : path.slice(idx).toLowerCase();
+}
+/** Set of every DEC/INV id cited by a `§` reference anywhere in the source tree. */
+function collectCitedIds(repoRoot) {
+    const cited = new Set();
+    for (const rel of walkSourceTree(repoRoot)) {
+        if (!SOURCE_EXTENSIONS.has(fileExt(rel)))
+            continue;
+        let content;
+        try {
+            content = readFileSync(join(repoRoot, rel), "utf8");
+        }
+        catch {
+            continue;
+        }
+        for (const m of content.matchAll(INV_RE))
+            cited.add(`INV-${m[1]}`);
+        for (const m of content.matchAll(DEC_RE))
+            cited.add(`DEC-${m[1]}`);
+    }
+    return cited;
+}
+function listEntityFiles(dir) {
+    try {
+        return readdirSync(dir, { withFileTypes: true, encoding: "utf8" })
+            .filter((d) => d.isFile() && d.name.endsWith(".md") && !d.name.startsWith("_"))
+            .map((d) => d.name);
+    }
+    catch {
+        return [];
+    }
+}
+/** True when `generated` is present and within the grace window. */
+function withinGrace(generated, now) {
+    if (typeof generated !== "string" || generated.length === 0)
+        return false;
+    const ts = Date.parse(generated);
+    if (Number.isNaN(ts))
+        return false;
+    return now.getTime() - ts < GRACE_MS;
+}
+export function runEntityOrphan(opts) {
+    const now = opts.now ?? new Date();
+    const findings = [];
+    const orphans = [];
+    const cited = collectCitedIds(opts.repoRoot);
+    const groups = [
+        { kind: "DEC", dir: decisionsDir(opts.repoRoot), rel: ".cairn/ground/decisions" },
+        { kind: "INV", dir: invariantsDir(opts.repoRoot), rel: ".cairn/ground/invariants" },
+    ];
+    for (const group of groups) {
+        for (const file of listEntityFiles(group.dir)) {
+            const abs = join(group.dir, file);
+            let fm;
+            try {
+                fm = parseFrontmatterRecord(readFileSync(abs, "utf8")).fm;
+            }
+            catch {
+                continue;
+            }
+            const id = typeof fm["id"] === "string" ? fm["id"] : "";
+            if (id.length === 0)
+                continue;
+            // Skip entities already out of the active set.
+            const status = typeof fm["status"] === "string" ? fm["status"] : "";
+            if (status === "archived" || status === "superseded")
+                continue;
+            // Grace window — don't retire freshly-emitted entities.
+            if (withinGrace(fm["generated"], now))
+                continue;
+            const sotKind = typeof fm["sot_kind"] === "string" ? fm["sot_kind"] : "ledger";
+            const entityPath = `${group.rel}/${file}`;
+            let candidate = null;
+            if (sotKind === "path") {
+                const sotPath = typeof fm["sot_path"] === "string" ? fm["sot_path"] : "";
+                const filePart = sotPath.split("#")[0] ?? "";
+                if (filePart.length > 0 &&
+                    filePart !== "ledger" &&
+                    !existsSync(join(opts.repoRoot, filePart))) {
+                    candidate = {
+                        id,
+                        kind: group.kind,
+                        sotKind,
+                        classification: "safe",
+                        reason: `orphan-by-source: doc-backed source "${filePart}" no longer exists`,
+                        entityPath,
+                    };
+                }
+            }
+            else {
+                // ledger-backed — keyed on live citation presence.
+                if (!cited.has(id)) {
+                    const sourceFile = typeof fm["source_file"] === "string" ? fm["source_file"] : "";
+                    const srcGone = sourceFile.length === 0 || !existsSync(join(opts.repoRoot, sourceFile));
+                    candidate = {
+                        id,
+                        kind: group.kind,
+                        sotKind,
+                        classification: srcGone ? "safe" : "ambiguous",
+                        reason: srcGone
+                            ? "orphan-by-source: source_file gone and zero live §cites remain"
+                            : "orphan-by-source: zero live §cites remain (source_file still present — review)",
+                        entityPath,
+                    };
+                }
+            }
+            if (candidate === null)
+                continue;
+            orphans.push(candidate);
+            findings.push({
+                pass: PASS_ID,
+                kind: "orphan_entity",
+                path: entityPath,
+                detail: `${id} (${candidate.classification}) — ${candidate.reason}`,
+                severity: "warn",
+                matched_text: id,
+            });
+        }
+    }
+    return { findings, orphans };
+}
+//# sourceMappingURL=entity-orphan.js.map

package/dist/gc/entity-orphan.js.map

@@ -0,0 +1 @@
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package/dist/gc/index.d.ts

@@ -30,6 +30,10 @@ export { runDocGardening } from "./doc-gardening.js";
 export type { DocGardeningOptions, DocGardeningResult, } from "./doc-gardening.js";
 export { extractSectionByAnchor, runDocSourceDrift, slugifyHeading, } from "./doc-source-drift.js";
 export type { DocSourceDriftOptions, DocSourceDriftResult, } from "./doc-source-drift.js";
+export { runEntityOrphan } from "./entity-orphan.js";
+export type { EntityOrphanOptions, EntityOrphanResult, OrphanCandidate, OrphanClassification, } from "./entity-orphan.js";
+export { runEntityRetire } from "./retire.js";
+export type { EntityRetireOptions, EntityRetireResult, } from "./retire.js";
 export { runFrontmatterFreshness, } from "./frontmatter.js";
 export type { FrontmatterFreshnessOptions, FrontmatterFreshnessResult, } from "./frontmatter.js";
 export { runGeneratorDrift } from "./generator-drift.js";

package/dist/gc/index.js

@@ -22,6 +22,8 @@ export { runCompletionIntegrity } from "./completion-integrity.js";
 export { runDocClaimsVsRuntime } from "./doc-claims.js";
 export { runDocGardening } from "./doc-gardening.js";
 export { extractSectionByAnchor, runDocSourceDrift, slugifyHeading, } from "./doc-source-drift.js";
+export { runEntityOrphan } from "./entity-orphan.js";
+export { runEntityRetire } from "./retire.js";
 export { runFrontmatterFreshness, } from "./frontmatter.js";
 export { runGeneratorDrift } from "./generator-drift.js";
 export { runQualityUpdate as runQualityGradesUpdate } from "./quality-update.js";

package/dist/gc/index.js.map

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package/dist/gc/retire.d.ts

@@ -0,0 +1,57 @@
+/**
+ * Entity retirement — apply half of the orphan subsystem.
+ *
+ * Runs the `entity-orphan` pass, then archives the SAFE subset
+ * (provably orphaned: doc source gone, or zero live §cites + source_file
+ * gone) via `archiveEntity`. Ambiguous orphans are never auto-retired —
+ * they surface for operator/agent triage through cairn-attention.
+ *
+ * The apply is wrapped in the same canary/rollback envelope the GC batch
+ * uses: after the archive commit lands, `runGcCanary` rebuilds the
+ * manifest and sanity-checks ground state; on failure the whole batch is
+ * `git reset --hard` back to the pre-batch SHA. Archiving never
+ * hard-deletes, so even a rolled-back run leaves no dangling references.
+ *
+ * `apply: false` (the default) is surface-only — it returns what *would*
+ * be retired without mutating anything. The Stop-hook autotrigger and
+ * `cairn gc retire --apply` opt into the mutating path.
+ */
+import { type OrphanCandidate } from "./entity-orphan.js";
+import type { GcFinding } from "./types.js";
+export interface EntityRetireOptions {
+    repoRoot: string;
+    /** When false (default) the run is surface-only — no archive, no commit. */
+    apply?: boolean;
+    /** Re-run the canary after the archive commit lands. Default true. */
+    canary?: boolean;
+    /** Override the commit author (smoke convenience). */
+    author?: {
+        name: string;
+        email: string;
+    };
+    /** Inject "now" for the grace window (tests). */
+    now?: Date;
+}
+export interface RetiredEntity {
+    id: string;
+    kind: "DEC" | "INV";
+    archivedPath: string;
+    reason: string;
+}
+export interface EntityRetireResult {
+    /** All orphan findings (safe + ambiguous) for the sweep surface. */
+    findings: GcFinding[];
+    /** Entities archived this run (empty when apply=false or rolled back). */
+    retired: RetiredEntity[];
+    /** Safe orphans not retired — surface-only mode, archive failure, or rollback. */
+    surfaced: OrphanCandidate[];
+    /** Ambiguous orphans — always surfaced, never auto-retired. */
+    ambiguous: OrphanCandidate[];
+    pre_sha: string | null;
+    post_sha: string | null;
+    commit_sha: string | null;
+    canary_ok: boolean;
+    canary_failures: string[];
+    rolled_back: boolean;
+}
+export declare function runEntityRetire(opts: EntityRetireOptions): Promise<EntityRetireResult>;

package/dist/gc/retire.js

@@ -0,0 +1,189 @@
+/**
+ * Entity retirement — apply half of the orphan subsystem.
+ *
+ * Runs the `entity-orphan` pass, then archives the SAFE subset
+ * (provably orphaned: doc source gone, or zero live §cites + source_file
+ * gone) via `archiveEntity`. Ambiguous orphans are never auto-retired —
+ * they surface for operator/agent triage through cairn-attention.
+ *
+ * The apply is wrapped in the same canary/rollback envelope the GC batch
+ * uses: after the archive commit lands, `runGcCanary` rebuilds the
+ * manifest and sanity-checks ground state; on failure the whole batch is
+ * `git reset --hard` back to the pre-batch SHA. Archiving never
+ * hard-deletes, so even a rolled-back run leaves no dangling references.
+ *
+ * `apply: false` (the default) is surface-only — it returns what *would*
+ * be retired without mutating anything. The Stop-hook autotrigger and
+ * `cairn gc retire --apply` opt into the mutating path.
+ */
+import { simpleGit } from "simple-git";
+import { archiveEntity, recordDriftEvent } from "@isaacriehm/cairn-state";
+import { logger } from "../logger.js";
+import { runGcCanary } from "./canary.js";
+import { runEntityOrphan } from "./entity-orphan.js";
+const log = logger("gc.retire");
+function commitSubject(retired) {
+    const decs = retired.filter((r) => r.kind === "DEC").length;
+    const invs = retired.filter((r) => r.kind === "INV").length;
+    const parts = [];
+    if (decs > 0)
+        parts.push(`${decs} DEC`);
+    if (invs > 0)
+        parts.push(`${invs} INV`);
+    return `chore(gc): retire ${parts.join(" + ")} orphaned ${retired.length === 1 ? "entity" : "entities"}`;
+}
+function commitMessage(retired) {
+    const body = retired
+        .map((r) => `- ${r.id}: ${r.reason} → ${r.archivedPath}`)
+        .join("\n");
+    return `${commitSubject(retired)}\n\nArchived by the entity-orphan GC pass:\n${body}\n`;
+}
+export async function runEntityRetire(opts) {
+    const apply = opts.apply === true;
+    const canaryEnabled = opts.canary ?? true;
+    const orphanRun = runEntityOrphan({
+        repoRoot: opts.repoRoot,
+        ...(opts.now !== undefined ? { now: opts.now } : {}),
+    });
+    const safe = orphanRun.orphans.filter((o) => o.classification === "safe");
+    const ambiguous = orphanRun.orphans.filter((o) => o.classification === "ambiguous");
+    // Ambiguous orphans are never auto-retired — surface them as drift events
+    // so cairn-attention can offer a one-tap retire (or prompt a fix). Recorded
+    // whether or not we apply, since this is the dedicated retirement entry
+    // point invoked by the autonomous daily tick.
+    const driftTs = (opts.now ?? new Date()).toISOString();
+    for (const a of ambiguous) {
+        try {
+            recordDriftEvent(opts.repoRoot, {
+                ts: driftTs,
+                kind: "orphan_entity",
+                path: a.entityPath,
+                detail: `${a.id} orphaned (${a.reason}). Retire via cairn_retire_${a.kind === "INV" ? "invariant" : "decision"}, or restore a live §cite.`,
+                severity: "soft",
+                dec_id: a.id,
+            });
+        }
+        catch {
+            /* best-effort — drift log is advisory */
+        }
+    }
+    const base = {
+        findings: orphanRun.findings,
+        retired: [],
+        surfaced: [...safe],
+        ambiguous,
+        pre_sha: null,
+        post_sha: null,
+        commit_sha: null,
+        canary_ok: true,
+        canary_failures: [],
+        rolled_back: false,
+    };
+    if (!apply || safe.length === 0) {
+        return base;
+    }
+    // Snapshot pre-batch SHA for rollback. Absent git (or a non-repo) still
+    // archives — the state change is the point — it just skips commit/canary.
+    const git = simpleGit({ baseDir: opts.repoRoot });
+    let preSha = null;
+    try {
+        preSha = (await git.revparse(["HEAD"])).trim();
+    }
+    catch {
+        preSha = null;
+    }
+    const retired = [];
+    const failedToArchive = [];
+    for (const cand of safe) {
+        const res = archiveEntity({
+            repoRoot: opts.repoRoot,
+            id: cand.id,
+            reason: cand.reason,
+            ...(opts.now !== undefined ? { now: opts.now } : {}),
+        });
+        if (res.ok) {
+            retired.push({
+                id: res.id,
+                kind: res.kind,
+                archivedPath: res.archivedPath,
+                reason: cand.reason,
+            });
+        }
+        else {
+            failedToArchive.push(cand);
+        }
+    }
+    if (retired.length === 0) {
+        return { ...base, retired: [], surfaced: failedToArchive, pre_sha: preSha };
+    }
+    // Commit the archive move + ledger rebuild + cache prune as one chore(gc).
+    let commitSha = null;
+    if (preSha !== null) {
+        try {
+            if (opts.author !== undefined) {
+                await git.addConfig("user.name", opts.author.name, false, "local");
+                await git.addConfig("user.email", opts.author.email, false, "local");
+            }
+            await git.raw(["add", "-A", ".cairn/ground"]);
+            await git.commit(commitMessage(retired));
+            commitSha = (await git.revparse(["HEAD"])).trim();
+        }
+        catch (err) {
+            log.warn({ err: err instanceof Error ? err.message : String(err) }, "entity-retire commit failed; archive applied to working tree only");
+        }
+    }
+    // Canary — rebuild manifest + sanity-check ground state. Rollback on fail.
+    let canaryOk = true;
+    let canaryFailures = [];
+    let rolledBack = false;
+    if (canaryEnabled && commitSha !== null && preSha !== null) {
+        const canary = runGcCanary({ repoRoot: opts.repoRoot });
+        canaryOk = canary.ok;
+        canaryFailures = canary.failures;
+        if (!canary.ok) {
+            try {
+                await git.reset(["--hard", preSha]);
+                rolledBack = true;
+                log.warn({ repo: opts.repoRoot, pre_sha: preSha, retired: retired.length, failures: canary.failures }, "entity-retire rolled back — canary failed");
+            }
+            catch (err) {
+                log.warn({ err: err instanceof Error ? err.message : String(err) }, "entity-retire rollback failed");
+            }
+        }
+    }
+    if (rolledBack) {
+        return {
+            ...base,
+            retired: [],
+            surfaced: [...safe],
+            pre_sha: preSha,
+            post_sha: preSha,
+            commit_sha: null,
+            canary_ok: false,
+            canary_failures: canaryFailures,
+            rolled_back: true,
+        };
+    }
+    let postSha = commitSha;
+    if (postSha === null && preSha !== null) {
+        try {
+            postSha = (await git.revparse(["HEAD"])).trim();
+        }
+        catch {
+            postSha = preSha;
+        }
+    }
+    log.info({ repo: opts.repoRoot, retired: retired.length, ambiguous: ambiguous.length, commit: commitSha }, "entity-retire complete");
+    return {
+        ...base,
+        retired,
+        surfaced: failedToArchive,
+        pre_sha: preSha,
+        post_sha: postSha,
+        commit_sha: commitSha,
+        canary_ok: canaryOk,
+        canary_failures: canaryFailures,
+        rolled_back: false,
+    };
+}
+//# sourceMappingURL=retire.js.map

package/dist/gc/retire.js.map

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package/dist/gc/sweep.js

@@ -23,6 +23,7 @@ import { runCompletionIntegrity } from "./completion-integrity.js";
 import { runDocClaimsVsRuntime } from "./doc-claims.js";
 import { runDocGardening } from "./doc-gardening.js";
 import { runDocSourceDrift } from "./doc-source-drift.js";
+import { runEntityOrphan } from "./entity-orphan.js";
 import { runFrontmatterFreshness } from "./frontmatter.js";
 import { runGeneratorDrift } from "./generator-drift.js";
 import { runQualityUpdate } from "./quality-update.js";
@@ -47,6 +48,7 @@ export async function runGcSweep(opts) {
         "attested-commits-pruning": 0,
         "doc-claims-vs-runtime": 0,
         "doc-source-drift": 0,
+        "entity-orphan": 0,
     };
     // 1. Frontmatter freshness.
     {
@@ -143,6 +145,15 @@ export async function runGcSweep(opts) {
         findings.push(...r.findings);
         passDurations["doc-source-drift"] = Date.now() - t0;
     }
+    // 12. Entity-orphan — ledger → code; surface DEC/INV that no longer have
+    // a live home. Findings only; the safe subset is retired by the
+    // `cairn gc retire` apply path, not auto-merged as a Gc proposal.
+    {
+        const t0 = Date.now();
+        const r = runEntityOrphan({ repoRoot: opts.repoRoot });
+        findings.push(...r.findings);
+        passDurations["entity-orphan"] = Date.now() - t0;
+    }
     // Re-classify proposals against project globs (passes set defaults; this
     // ensures high-stakes hits dominate when a stale-frontmatter doc happens to
     // live under a high-stakes glob).