@isaacriehm/cairn-core 0.1.9 → 0.2.0

package/dist/init/phases/state-io.js.map

@@ -0,0 +1 @@
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package/dist/init/phases/types.d.ts

@@ -0,0 +1,93 @@
+/**
+ * Phase types for the MCP-native init pipeline.
+ *
+ * Each phase is a function `(ctx, state) → PhaseResult` registered as
+ * an MCP tool. The cairn-adopt skill drives the pipeline by invoking
+ * `cairn_init_resume` to read the next phase id, then calling the
+ * phase tool. When the phase returns `needs_input`, the skill renders
+ * an inline `AskUserQuestion`, threads the answer back, and re-invokes
+ * the same phase tool until it returns `complete` with the next id.
+ *
+ * State persists to `.cairn/init-state.json` between phases so the
+ * pipeline is crash-safe — operator can `/exit` Claude Code mid-init
+ * and pick up at the same phase on the next session.
+ */
+/** Phase ids in execution order. */
+export declare const PHASE_IDS: readonly ["1-detect", "2-walker", "3-mapper", "3b-seed", "4-pilot", "5-brand", "6-docs-ingest", "7b-source-comments", "7c-rules-merge", "8-baseline", "10-strip", "12-multidev"];
+export type PhaseId = (typeof PHASE_IDS)[number];
+/** Inline A/B/C question rendered via AskUserQuestion in the skill. */
+export interface PhaseQuestion {
+    /** Stable identifier so the skill can correlate answers across re-invocations. */
+    id: string;
+    /** Operator-facing prompt — full English, not caveman. */
+    prompt: string;
+    /** Options labeled A/B/C/... */
+    options: PhaseOption[];
+    /** Default option id (used when operator skips or auto-pilot is set). */
+    default: string;
+}
+export interface PhaseOption {
+    /** Internal id stored back into state.answer when chosen. */
+    id: string;
+    /** Operator-visible label. */
+    label: string;
+    /** Optional secondary line — displayed under the label. */
+    detail?: string;
+}
+/**
+ * State carried between phase invocations. `outputs` accumulates each
+ * phase's typed result keyed by phase id; `answer` is set by the skill
+ * driver when re-invoking a phase that returned `needs_input`.
+ */
+export interface PhaseState {
+    /** Repo root the pipeline is operating against. */
+    repoRoot: string;
+    /** The phase currently executing. */
+    currentPhase: PhaseId;
+    /** Accumulated outputs keyed by phase id. */
+    outputs: PhaseOutputs;
+    /** Operator's answer to the last `needs_input` question (if any). */
+    answer?: string | undefined;
+    /** When the pipeline started (ISO-8601). */
+    startedAt: string;
+    /** Schema version for the on-disk state file (bump on breaking change). */
+    schemaVersion: 1;
+}
+/**
+ * Phase outputs are deliberately loose-typed — each phase function
+ * stamps its own typed result under its id. Downstream phases read
+ * via type-narrowing helpers in their own modules.
+ */
+export type PhaseOutputs = {
+    -readonly [K in PhaseId]?: unknown;
+};
+/** Discriminated union returned by every phase function. */
+export type PhaseResult = {
+    readonly status: "complete";
+    /** Next phase id to invoke; null = pipeline done. */
+    readonly nextPhase: PhaseId | null;
+    readonly state: PhaseState;
+} | {
+    readonly status: "needs_input";
+    readonly question: PhaseQuestion;
+    readonly state: PhaseState;
+} | {
+    readonly status: "error";
+    readonly error: PhaseError;
+    readonly state: PhaseState;
+};
+/** Phase failure mode — propagates back to the skill for operator surfacing. */
+export interface PhaseError {
+    /** Stable error code; the skill can pattern-match for retry semantics. */
+    code: string;
+    /** Operator-facing message. */
+    message: string;
+    /** Optional captured stderr / stack for diagnostics. */
+    detail?: string;
+}
+/** Step the orchestrator is reporting on. Used by the resume entry point. */
+export interface ResumeReport {
+    readonly status: "ready" | "done";
+    readonly nextPhase: PhaseId | null;
+    readonly state: PhaseState;
+}

package/dist/init/phases/types.js

@@ -0,0 +1,30 @@
+/**
+ * Phase types for the MCP-native init pipeline.
+ *
+ * Each phase is a function `(ctx, state) → PhaseResult` registered as
+ * an MCP tool. The cairn-adopt skill drives the pipeline by invoking
+ * `cairn_init_resume` to read the next phase id, then calling the
+ * phase tool. When the phase returns `needs_input`, the skill renders
+ * an inline `AskUserQuestion`, threads the answer back, and re-invokes
+ * the same phase tool until it returns `complete` with the next id.
+ *
+ * State persists to `.cairn/init-state.json` between phases so the
+ * pipeline is crash-safe — operator can `/exit` Claude Code mid-init
+ * and pick up at the same phase on the next session.
+ */
+/** Phase ids in execution order. */
+export const PHASE_IDS = [
+    "1-detect",
+    "2-walker",
+    "3-mapper",
+    "3b-seed",
+    "4-pilot",
+    "5-brand",
+    "6-docs-ingest",
+    "7b-source-comments",
+    "7c-rules-merge",
+    "8-baseline",
+    "10-strip",
+    "12-multidev",
+];
+//# sourceMappingURL=types.js.map

package/dist/init/phases/types.js.map

@@ -0,0 +1 @@
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package/dist/init/seed.js

@@ -10,8 +10,17 @@ import { chmodSync, existsSync, mkdirSync, readFileSync, readdirSync, statSync,
 import { dirname, join, relative } from "node:path";
 import { fileURLToPath } from "node:url";
 const HERE = dirname(fileURLToPath(import.meta.url));
-/** dist/init/seed.js → walk up to package root, then into templates/. */
-const TEMPLATES_ROOT = join(HERE, "..", "..", "templates");
+/**
+ * dist/init/seed.js → walk up to package root, then into templates/.
+ * The Claude Code plugin bundle co-locates templates beside the bundle
+ * (packages/cairn-frontend-claudecode/dist/templates/) — esbuild
+ * --define flips the lookup so the bundled binary finds them as a
+ * sibling of dist/cli.cjs rather than two levels up from a per-module
+ * dist file.
+ */
+const TEMPLATES_ROOT = typeof __CAIRN_BUNDLED__ !== "undefined" && __CAIRN_BUNDLED__
+    ? join(HERE, "templates")
+    : join(HERE, "..", "..", "templates");
 export function seedCairnLayout(opts) {
     const written = [];
     const collisions = [];

package/dist/init/seed.js.map

@@ -1 +1 @@
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+{"version":3,"file":"seed.js","sourceRoot":"","sources":["../../src/init/seed.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EACL,SAAS,EACT,UAAU,EACV,SAAS,EACT,YAAY,EACZ,WAAW,EACX,QAAQ,EACR,aAAa,GACd,MAAM,SAAS,CAAC;AACjB,OAAO,EAAE,OAAO,EAAE,IAAI,EAAE,QAAQ,EAAE,MAAM,WAAW,CAAC;AACpD,OAAO,EAAE,aAAa,EAAE,MAAM,UAAU,CAAC;AAEzC,MAAM,IAAI,GAAG,OAAO,CAAC,aAAa,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC;AACrD;;;;;;;GAOG;AACH,MAAM,cAAc,GAClB,OAAO,iBAAiB,KAAK,WAAW,IAAI,iBAAiB;IAC3D,CAAC,CAAC,IAAI,CAAC,IAAI,EAAE,WAAW,CAAC;IACzB,CAAC,CAAC,IAAI,CAAC,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,WAAW,CAAC,CAAC;AAc1C,MAAM,UAAU,eAAe,CAAC,IAAiB;IAC/C,MAAM,OAAO,GAAa,EAAE,CAAC;IAC7B,MAAM,UAAU,GAAa,EAAE,CAAC;IAChC,IAAI,CAAC,cAAc,EAAE,CAAC,MAAM,EAAE,EAAE;QAC9B,MAAM,GAAG,GAAG,QAAQ,CAAC,cAAc,EAAE,MAAM,CAAC,CAAC;QAC7C,MAAM,MAAM,GAAG,IAAI,CAAC,IAAI,CAAC,QAAQ,EAAE,GAAG,CAAC,CAAC;QACxC,IAAI,UAAU,CAAC,MAAM,CAAC,IAAI,IAAI,CAAC,KAAK,KAAK,IAAI,EAAE,CAAC;YAC9C,UAAU,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;YACrB,OAAO;QACT,CAAC;QACD,SAAS,CAAC,OAAO,CAAC,MAAM,CAAC,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;QAChD,MAAM,GAAG,GAAG,YAAY,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;QACzC,MAAM,GAAG,GAAG,iBAAiB,CAAC,EAAE,OAAO,EAAE,GAAG,EAAE,WAAW,EAAE,IAAI,CAAC,WAAW,EAAE,OAAO,EAAE,GAAG,EAAE,CAAC,CAAC;QAC7F,aAAa,CAAC,MAAM,EAAE,GAAG,EAAE,MAAM,CAAC,CAAC;QACnC,IAAI,oBAAoB,CAAC,GAAG,CAAC,EAAE,CAAC;YAC9B,IAAI,CAAC;gBACH,SAAS,CAAC,MAAM,EAAE,KAAK,CAAC,CAAC;YAC3B,CAAC;YAAC,MAAM,CAAC;gBACP,mEAAmE;gBACnE,kEAAkE;gBAClE,sDAAsD;YACxD,CAAC;QACH,CAAC;QACD,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;IACpB,CAAC,CAAC,CAAC;IACH,OAAO,EAAE,aAAa,EAAE,OAAO,EAAE,UAAU,EAAE,CAAC;AAChD,CAAC;AAED;;;;;;;;;;;;;GAaG;AACH,SAAS,iBAAiB,CAAC,IAI1B;IACC,oEAAoE;IACpE,MAAM,IAAI,GAAG,IAAI,CAAC,OAAO,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;IAChD,IACE,IAAI,KAAK,2BAA2B;QACpC,IAAI,KAAK,4BAA4B,EACrC,CAAC;QACD,OAAO,IAAI,CAAC,OAAO,CAAC;IACtB,CAAC;IACD,OAAO,IAAI,CAAC,OAAO;SAChB,OAAO,CAAC,kBAAkB,EAAE,GAAG,IAAI,CAAC,WAAW,GAAG,CAAC;SACnD,OAAO,CAAC,mBAAmB,EAAE,KAAK,IAAI,CAAC,WAAW,IAAI,CAAC;SACvD,OAAO,CAAC,iBAAiB,EAAE,IAAI,CAAC,WAAW,CAAC,CAAC;AAClD,CAAC;AAED,SAAS,IAAI,CAAC,GAAW,EAAE,MAA6B;IACtD,KAAK,MAAM,IAAI,IAAI,WAAW,CAAC,GAAG,CAAC,EAAE,CAAC;QACpC,MAAM,GAAG,GAAG,IAAI,CAAC,GAAG,EAAE,IAAI,CAAC,CAAC;QAC5B,MAAM,CAAC,GAAG,QAAQ,CAAC,GAAG,CAAC,CAAC;QACxB,IAAI,CAAC,CAAC,WAAW,EAAE,EAAE,CAAC;YACpB,IAAI,CAAC,GAAG,EAAE,MAAM,CAAC,CAAC;QACpB,CAAC;aAAM,IAAI,CAAC,CAAC,MAAM,EAAE,EAAE,CAAC;YACtB,MAAM,CAAC,GAAG,CAAC,CAAC;QACd,CAAC;IACH,CAAC;AACH,CAAC;AAED,2EAA2E;AAC3E,MAAM,UAAU,aAAa;IAC3B,OAAO,cAAc,CAAC;AACxB,CAAC;AAED;;;;GAIG;AACH,SAAS,oBAAoB,CAAC,GAAW;IACvC,MAAM,IAAI,GAAG,GAAG,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;IACvC,OAAO,CACL,IAAI,KAAK,6BAA6B;QACtC,IAAI,KAAK,8BAA8B;QACvC,IAAI,KAAK,6BAA6B,CACvC,CAAC;AACJ,CAAC"}

package/dist/init/walker.d.ts

@@ -67,12 +67,6 @@ export interface BuildRepoSummaryOptions {
      * Pass 1 has no depth limit. Default 6.
      */
     pass2DepthCap?: number;
-    /**
-     * Backwards-compat alias for `pass2DepthCap`. Older callers (smokes, the
-     * `cairn scope rebuild` command) used `depthCap` against the legacy
-     * single-pass walker. Treated as `pass2DepthCap` so they keep working.
-     */
-    depthCap?: number;
     /**
      * Belt-and-suspenders total cap. Default 3000. If exceeded, Pass 2 is
      * truncated first.

package/dist/init/walker.js

@@ -89,7 +89,7 @@ const DEFAULT_PASS1_CAP = 500;
 const DEFAULT_PASS2_CAP = 200;
 const DEFAULT_PASS2_DEPTH_CAP = 6;
 const DEFAULT_TOTAL_CAP = 3000;
-/** Legacy single-pass depth cap, retained for the fallback walker only. */
+/** Single-pass depth cap, used by the fallback walker when no high-signal dirs match. */
 const DEFAULT_DEPTH_CAP = 10;
 const MANIFEST_PREVIEW_LINES = 80;
 const MANIFEST_FILES = new Set([
@@ -175,8 +175,7 @@ export function buildRepoSummary(opts) {
     const root = opts.repoRoot;
     const pass1Cap = opts.pass1Cap ?? DEFAULT_PASS1_CAP;
     const pass2Cap = opts.pass2Cap ?? DEFAULT_PASS2_CAP;
-    // pass2DepthCap explicit > legacy depthCap > default 6
-    const pass2DepthCap = opts.pass2DepthCap ?? opts.depthCap ?? DEFAULT_PASS2_DEPTH_CAP;
+    const pass2DepthCap = opts.pass2DepthCap ?? DEFAULT_PASS2_DEPTH_CAP;
     const fileCap = opts.fileCap ?? DEFAULT_TOTAL_CAP;
     const { paths, dirs, truncatedFile, truncatedDepth, usedGit } = listFiles({
         root,

package/dist/init/walker.js.map

@@ -1 +1 @@
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package/dist/join/index.js

@@ -19,9 +19,10 @@
  * happened. Never throws on recoverable issues — every step has a status.
  */
 import { execFileSync } from "node:child_process";
-import { chmodSync, existsSync, mkdirSync, readFileSync, statSync } from "node:fs";
+import { chmodSync, existsSync, mkdirSync, readFileSync, statSync, writeFileSync, } from "node:fs";
 import { dirname, join, resolve } from "node:path";
 import { parse as parseYaml } from "yaml";
+import { seedAttestedCommits } from "../hooks/seed-attested.js";
 import { VERSION } from "../index.js";
 import { logger } from "../logger.js";
 const log = logger("join");
@@ -54,7 +55,7 @@ export function runJoin(args = {}) {
         steps.push({
             step: "version-check",
             status: "skipped",
-            detail: ".cairn/config.yaml missing cairn_version (legacy adoption?)",
+            detail: ".cairn/config.yaml missing cairn_version — re-run init",
         });
     }
     else if (projectVersion !== VERSION) {
@@ -106,6 +107,23 @@ export function runJoin(args = {}) {
     steps.push(chmodStep);
     const sessionStep = ensureSessionDir(repoRoot);
     steps.push(sessionStep);
+    // `.cairn/.attested-commits` is gitignored + per-clone, so each fresh
+    // clone needs its own seed of all reachable HEAD SHAs. Without this,
+    // the Stop-hook bypass detector flags every pre-existing commit as a
+    // `--no-verify` bypass on the contributor's first session.
+    const attestedSeed = seedAttestedCommits(repoRoot);
+    steps.push({
+        step: "seed-attested-commits",
+        status: attestedSeed.status,
+        detail: attestedSeed.detail,
+    });
+    // `.cairn/.cli-path` lets the git hooks resolve the bundled
+    // `dist/cli.mjs` path without requiring a global `cairn` binary on
+    // PATH (the plugin model has none). Gitignored, per-clone — hooks
+    // read it on every commit; if absent they fall back to `command -v
+    // cairn`.
+    const cliPathStep = writeCliPathFile(repoRoot);
+    steps.push(cliPathStep);
     const bootstrapped = steps.every((s) => s.status !== "error");
     return {
         repoRoot,
@@ -200,6 +218,35 @@ function chmodHooks(hooksDir) {
         detail: `${okCount} hook${okCount === 1 ? "" : "s"} marked executable`,
     };
 }
+function writeCliPathFile(repoRoot) {
+    const cliArgv = process.argv[1];
+    if (typeof cliArgv !== "string" || cliArgv.length === 0) {
+        return {
+            step: "write-cli-path",
+            status: "skipped",
+            detail: "process.argv[1] empty — hooks will fall back to global cairn",
+        };
+    }
+    const isModule = /\.[mc]?js$/.test(cliArgv);
+    const invocation = isModule ? `node ${cliArgv}` : cliArgv;
+    const path = join(repoRoot, ".cairn", ".cli-path");
+    try {
+        mkdirSync(join(repoRoot, ".cairn"), { recursive: true });
+        writeFileSync(path, `${invocation}\n`, "utf8");
+    }
+    catch (err) {
+        return {
+            step: "write-cli-path",
+            status: "error",
+            detail: `write ${path} failed: ${err instanceof Error ? err.message : String(err)}`,
+        };
+    }
+    return {
+        step: "write-cli-path",
+        status: "ok",
+        detail: `cli invocation: ${invocation}`,
+    };
+}
 function ensureSessionDir(repoRoot) {
     const dir = join(repoRoot, ".cairn", "sessions");
     try {

package/dist/join/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/join/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;GAmBG;AAEH,OAAO,EAAE,YAAY,EAAE,MAAM,oBAAoB,CAAC;AAClD,OAAO,EACL,SAAS,EACT,UAAU,EACV,SAAS,EACT,YAAY,EACZ,QAAQ,EACR,aAAa,GACd,MAAM,SAAS,CAAC;AACjB,OAAO,EAAE,OAAO,EAAE,IAAI,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AACnD,OAAO,EAAE,KAAK,IAAI,SAAS,EAAE,MAAM,MAAM,CAAC;AAC1C,OAAO,EAAE,mBAAmB,EAAE,MAAM,2BAA2B,CAAC;AAChE,OAAO,EAAE,OAAO,EAAE,MAAM,aAAa,CAAC;AACtC,OAAO,EAAE,MAAM,EAAE,MAAM,cAAc,CAAC;AAEtC,MAAM,GAAG,GAAG,MAAM,CAAC,MAAM,CAAC,CAAC;AAyC3B,MAAM,UAAU,GAAG,CAAC,YAAY,EAAE,aAAa,EAAE,YAAY,CAAU,CAAC;AAExE,MAAM,UAAU,OAAO,CAAC,OAAoB,EAAE;IAC5C,MAAM,GAAG,GAAG,IAAI,CAAC,GAAG,IAAI,OAAO,CAAC,GAAG,EAAE,CAAC;IACtC,MAAM,KAAK,GAAe,EAAE,CAAC;IAE7B,MAAM,QAAQ,GAAG,IAAI,CAAC,QAAQ,IAAI,aAAa,CAAC,GAAG,CAAC,CAAC;IACrD,IAAI,QAAQ,KAAK,IAAI,EAAE,CAAC;QACtB,KAAK,CAAC,IAAI,CAAC;YACT,IAAI,EAAE,aAAa;YACnB,MAAM,EAAE,OAAO;YACf,MAAM,EACJ,8FAA8F;SACjG,CAAC,CAAC;QACH,OAAO;YACL,QAAQ,EAAE,IAAI;YACd,YAAY,EAAE,KAAK;YACnB,KAAK;YACL,mBAAmB,EAAE,IAAI;YACzB,UAAU,EAAE,OAAO;SACpB,CAAC;IACJ,CAAC;IACD,KAAK,CAAC,IAAI,CAAC;QACT,IAAI,EAAE,aAAa;QACnB,MAAM,EAAE,IAAI;QACZ,MAAM,EAAE,QAAQ;KACjB,CAAC,CAAC;IAEH,MAAM,cAAc,GAAG,kBAAkB,CAAC,QAAQ,CAAC,CAAC;IACpD,IAAI,cAAc,KAAK,IAAI,EAAE,CAAC;QAC5B,KAAK,CAAC,IAAI,CAAC;YACT,IAAI,EAAE,eAAe;YACrB,MAAM,EAAE,SAAS;YACjB,MAAM,EAAE,wDAAwD;SACjE,CAAC,CAAC;IACL,CAAC;SAAM,IAAI,cAAc,KAAK,OAAO,EAAE,CAAC;QACtC,KAAK,CAAC,IAAI,CAAC;YACT,IAAI,EAAE,eAAe;YACrB,MAAM,EAAE,MAAM;YACd,MAAM,EAAE,qBAAqB,cAAc,iBAAiB,OAAO,sDAAsD,cAAc,IAAI;SAC5I,CAAC,CAAC;IACL,CAAC;SAAM,CAAC;QACN,KAAK,CAAC,IAAI,CAAC;YACT,IAAI,EAAE,eAAe;YACrB,MAAM,EAAE,IAAI;YACZ,MAAM,EAAE,iBAAiB,cAAc,EAAE;SAC1C,CAAC,CAAC;IACL,CAAC;IAED,IAAI,IAAI,CAAC,MAAM,KAAK,IAAI,EAAE,CAAC;QACzB,KAAK,CAAC,IAAI,CAAC;YACT,IAAI,EAAE,SAAS;YACf,MAAM,EAAE,IAAI;YACZ,MAAM,EAAE,2DAA2D;SACpE,CAAC,CAAC;QACH,OAAO;YACL,QAAQ;YACR,YAAY,EAAE,IAAI;YAClB,KAAK;YACL,mBAAmB,EAAE,cAAc;YACnC,UAAU,EAAE,OAAO;SACpB,CAAC;IACJ,CAAC;IAED,MAAM,QAAQ,GAAG,IAAI,CAAC,QAAQ,EAAE,QAAQ,EAAE,WAAW,CAAC,CAAC;IACvD,IAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,EAAE,CAAC;QAC1B,KAAK,CAAC,IAAI,CAAC;YACT,IAAI,EAAE,gBAAgB;YACtB,MAAM,EAAE,OAAO;YACf,MAAM,EAAE,GAAG,QAAQ,mDAAmD;SACvE,CAAC,CAAC;QACH,OAAO;YACL,QAAQ;YACR,YAAY,EAAE,KAAK;YACnB,KAAK;YACL,mBAAmB,EAAE,cAAc;YACnC,UAAU,EAAE,OAAO;SACpB,CAAC;IACJ,CAAC;IAED,MAAM,QAAQ,GAAG,eAAe,CAAC,QAAQ,CAAC,CAAC;IAC3C,KAAK,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;IAErB,MAAM,SAAS,GAAG,UAAU,CAAC,QAAQ,CAAC,CAAC;IACvC,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC;IAEtB,MAAM,WAAW,GAAG,gBAAgB,CAAC,QAAQ,CAAC,CAAC;IAC/C,KAAK,CAAC,IAAI,CAAC,WAAW,CAAC,CAAC;IAExB,sEAAsE;IACtE,qEAAqE;IACrE,qEAAqE;IACrE,2DAA2D;IAC3D,MAAM,YAAY,GAAG,mBAAmB,CAAC,QAAQ,CAAC,CAAC;IACnD,KAAK,CAAC,IAAI,CAAC;QACT,IAAI,EAAE,uBAAuB;QAC7B,MAAM,EAAE,YAAY,CAAC,MAAM;QAC3B,MAAM,EAAE,YAAY,CAAC,MAAM;KAC5B,CAAC,CAAC;IAEH,4DAA4D;IAC5D,mEAAmE;IACnE,kEAAkE;IAClE,mEAAmE;IACnE,UAAU;IACV,MAAM,WAAW,GAAG,gBAAgB,CAAC,QAAQ,CAAC,CAAC;IAC/C,KAAK,CAAC,IAAI,CAAC,WAAW,CAAC,CAAC;IAExB,MAAM,YAAY,GAAG,KAAK,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,MAAM,KAAK,OAAO,CAAC,CAAC;IAC9D,OAAO;QACL,QAAQ;QACR,YAAY;QACZ,KAAK;QACL,mBAAmB,EAAE,cAAc;QACnC,UAAU,EAAE,OAAO;KACpB,CAAC;AACJ,CAAC;AAED,gFAAgF;AAChF,gFAAgF;AAChF,gFAAgF;AAEhF,SAAS,aAAa,CAAC,KAAa;IAClC,IAAI,GAAG,GAAG,OAAO,CAAC,KAAK,CAAC,CAAC;IACzB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,EAAE,EAAE,CAAC,EAAE,EAAE,CAAC;QAC5B,IAAI,UAAU,CAAC,IAAI,CAAC,GAAG,EAAE,QAAQ,CAAC,CAAC;YAAE,OAAO,GAAG,CAAC;QAChD,MAAM,MAAM,GAAG,OAAO,CAAC,GAAG,CAAC,CAAC;QAC5B,IAAI,MAAM,KAAK,GAAG;YAAE,OAAO,IAAI,CAAC;QAChC,GAAG,GAAG,MAAM,CAAC;IACf,CAAC;IACD,OAAO,IAAI,CAAC;AACd,CAAC;AAED,SAAS,kBAAkB,CAAC,QAAgB;IAC1C,MAAM,IAAI,GAAG,IAAI,CAAC,QAAQ,EAAE,QAAQ,EAAE,aAAa,CAAC,CAAC;IACrD,IAAI,CAAC,UAAU,CAAC,IAAI,CAAC;QAAE,OAAO,IAAI,CAAC;IACnC,IAAI,CAAC;QACH,MAAM,MAAM,GAAG,SAAS,CAAC,YAAY,CAAC,IAAI,EAAE,MAAM,CAAC,CAA4B,CAAC;QAChF,MAAM,CAAC,GAAG,MAAM,EAAE,CAAC,eAAe,CAAC,CAAC;QACpC,OAAO,OAAO,CAAC,KAAK,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC;IAC1C,CAAC;IAAC,OAAO,GAAG,EAAE,CAAC;QACb,GAAG,CAAC,IAAI,CACN,EAAE,GAAG,EAAE,GAAG,YAAY,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE,EACzD,wBAAwB,CACzB,CAAC;QACF,OAAO,IAAI,CAAC;IACd,CAAC;AACH,CAAC;AAED,SAAS,eAAe,CAAC,QAAgB;IACvC,IAAI,CAAC,UAAU,CAAC,IAAI,CAAC,QAAQ,EAAE,MAAM,CAAC,CAAC,EAAE,CAAC;QACxC,OAAO;YACL,IAAI,EAAE,gBAAgB;YACtB,MAAM,EAAE,MAAM;YACd,MAAM,EAAE,oEAAoE;SAC7E,CAAC;IACJ,CAAC;IACD,IAAI,CAAC;QACH,YAAY,CAAC,KAAK,EAAE,CAAC,QAAQ,EAAE,gBAAgB,EAAE,kBAAkB,CAAC,EAAE;YACpE,GAAG,EAAE,QAAQ;YACb,QAAQ,EAAE,MAAM;YAChB,KAAK,EAAE,CAAC,QAAQ,EAAE,MAAM,EAAE,MAAM,CAAC;SAClC,CAAC,CAAC;QACH,OAAO;YACL,IAAI,EAAE,gBAAgB;YACtB,MAAM,EAAE,IAAI;YACZ,MAAM,EAAE,mCAAmC;SAC5C,CAAC;IACJ,CAAC;IAAC,OAAO,GAAG,EAAE,CAAC;QACb,OAAO;YACL,IAAI,EAAE,gBAAgB;YACtB,MAAM,EAAE,OAAO;YACf,MAAM,EAAE,sBAAsB,GAAG,YAAY,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE;SACjF,CAAC;IACJ,CAAC;AACH,CAAC;AAED,SAAS,UAAU,CAAC,QAAgB;IAClC,IAAI,OAAO,GAAG,CAAC,CAAC;IAChB,MAAM,MAAM,GAAa,EAAE,CAAC;IAC5B,KAAK,MAAM,IAAI,IAAI,UAAU,EAAE,CAAC;QAC9B,MAAM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package/dist/logger.d.ts

@@ -7,7 +7,7 @@ export declare const rootLogger: Logger;
  * file (the previous stream stays open for whatever Node's GC decides).
  */
 export declare function setLogFile(absPath: string): string;
-/** Re-route logger output to stderr. Useful for long-lived daemons. */
+/** Re-route logger output to stderr. Useful for CI / scripted callers. */
 export declare function setLogStderr(): void;
 /** Drop logger output entirely. Used by smokes that don't want noise. */
 export declare function setLogNull(): void;

package/dist/logger.js

@@ -4,10 +4,10 @@ import { Writable } from "node:stream";
 import { pino } from "pino";
 /**
  * Pino destination indirection. By default pino logs go to a black-hole
- * writable so structured log lines never leak into a CLI's terminal output.
- * Init / daemon / watch flows call `setLogFile(path)` early to redirect to
- * a file. Long-lived background processes (daemon) can call `setLogStderr()`
- * to fall back to stderr.
+ * writable so structured log lines never leak into a CLI's terminal
+ * output. `cairn init` and the MCP server call `setLogFile(path)` early
+ * to redirect to a file; CI / scripted callers can use `setLogStderr()`
+ * to surface logs directly.
  *
  * Children created via `logger(module)` write to whichever destination is
  * currently active at the time of the write — child references stay valid
@@ -60,7 +60,7 @@ export function setLogFile(absPath) {
     activeDestination = stream;
     return absPath;
 }
-/** Re-route logger output to stderr. Useful for long-lived daemons. */
+/** Re-route logger output to stderr. Useful for CI / scripted callers. */
 export function setLogStderr() {
     activeDestination = process.stderr;
 }

package/dist/logger.js.map

@@ -1 +1 @@
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package/dist/mcp/errors.d.ts

@@ -5,7 +5,7 @@
  * shaped as { error: { code, message, details? } }. The envelope is wrapped in
  * the MCP `CallToolResult` content text.
  */
-export type McpErrorCode = "VALIDATION_FAILED" | "TOOL_NOT_FOUND" | "PATH_OUTSIDE_REPO" | "PATH_HISTORICAL_USE_QUERY_HISTORY" | "PATH_NOT_ALLOWED" | "FILE_NOT_FOUND" | "DAEMON_UNAVAILABLE" | "OPERATION_TIMEOUT" | "DECISION_NOT_FOUND" | "DECISION_ID_TAKEN" | "INVALID_ASSERTION_KIND" | "SUPERSEDES_NOT_FOUND" | "INVARIANT_NOT_FOUND" | "TOPIC_NOT_REGISTERED" | "RUN_NOT_FOUND" | "TASK_NOT_FOUND" | "NOT_ALLOWED" | "NOT_IMPLEMENTED" | "BOOTSTRAP_REQUIRED";
+export type McpErrorCode = "VALIDATION_FAILED" | "TOOL_NOT_FOUND" | "PATH_OUTSIDE_REPO" | "PATH_HISTORICAL_USE_QUERY_HISTORY" | "PATH_NOT_ALLOWED" | "FILE_NOT_FOUND" | "OPERATION_TIMEOUT" | "DECISION_NOT_FOUND" | "DECISION_ID_TAKEN" | "INVALID_ASSERTION_KIND" | "SUPERSEDES_NOT_FOUND" | "INVARIANT_NOT_FOUND" | "TOPIC_NOT_REGISTERED" | "RUN_NOT_FOUND" | "TASK_NOT_FOUND" | "NOT_ALLOWED" | "NOT_IMPLEMENTED" | "BOOTSTRAP_REQUIRED" | "INTERNAL_ERROR";
 export interface McpErrorPayload {
     error: {
         code: McpErrorCode;

package/dist/mcp/schemas.d.ts

@@ -141,6 +141,10 @@ export declare const resolveAttentionInput: {
      * Item id from the attention skill — DEC-NNNN for a draft, the
      * baseline finding key (e.g. `BASELINE-stub_catalog_hits-services/auth.ts`)
      * for sensor findings, the event filename for invalidation events.
+     *
+     * For kind=bypass, item_id is the full SHA of the FIRST flagged commit
+     * (the rest go in flagged_items). For kind=review, item_id is the
+     * task_id of the FIRST pending review.
      */
     item_id: z.ZodString;
     /** Operator's pick from the inline A/B/C. */
@@ -152,13 +156,28 @@ export declare const resolveAttentionInput: {
     /**
      * Item kind — narrows the resolution path. The skill knows the kind
      * from the item it surfaced.
+     *
+     * `bypass`  — Stop hook surfaced N commits not in `.attested-commits`.
+     *             choice=a record-bypass (DEC), b accept-as-noted, c defer.
+     * `review`  — Stop hook surfaced N pending reviewer attestations.
+     *             choice=a spawn-now, b skip, c defer.
      */
     kind: z.ZodEnum<{
         drift: "drift";
+        bypass: "bypass";
+        review: "review";
         decision_draft: "decision_draft";
         baseline_finding: "baseline_finding";
         invalidation_event: "invalidation_event";
     }>;
+    /**
+     * Full SHA / task_id list for the bypass / review snapshot. Used
+     * with choice=c so the defer file knows which items to suppress.
+     * Optional for the other kinds (item_id alone identifies them).
+     */
+    flagged_items: z.ZodOptional<z.ZodArray<z.ZodString>>;
+    /** Override the defer window (hours). Default 24. Only meaningful when choice=c. */
+    defer_hours: z.ZodOptional<z.ZodNumber>;
     /** Optional free-text — when choice=c the operator may type a rationale. */
     rationale: z.ZodOptional<z.ZodString>;
 };

package/dist/mcp/schemas.js

@@ -129,6 +129,10 @@ export const resolveAttentionInput = {
      * Item id from the attention skill — DEC-NNNN for a draft, the
      * baseline finding key (e.g. `BASELINE-stub_catalog_hits-services/auth.ts`)
      * for sensor findings, the event filename for invalidation events.
+     *
+     * For kind=bypass, item_id is the full SHA of the FIRST flagged commit
+     * (the rest go in flagged_items). For kind=review, item_id is the
+     * task_id of the FIRST pending review.
      */
     item_id: z.string().min(1),
     /** Operator's pick from the inline A/B/C. */
@@ -136,13 +140,28 @@ export const resolveAttentionInput = {
     /**
      * Item kind — narrows the resolution path. The skill knows the kind
      * from the item it surfaced.
+     *
+     * `bypass`  — Stop hook surfaced N commits not in `.attested-commits`.
+     *             choice=a record-bypass (DEC), b accept-as-noted, c defer.
+     * `review`  — Stop hook surfaced N pending reviewer attestations.
+     *             choice=a spawn-now, b skip, c defer.
      */
     kind: z.enum([
         "decision_draft",
         "baseline_finding",
         "invalidation_event",
         "drift",
+        "bypass",
+        "review",
     ]),
+    /**
+     * Full SHA / task_id list for the bypass / review snapshot. Used
+     * with choice=c so the defer file knows which items to suppress.
+     * Optional for the other kinds (item_id alone identifies them).
+     */
+    flagged_items: z.array(z.string().min(1)).optional(),
+    /** Override the defer window (hours). Default 24. Only meaningful when choice=c. */
+    defer_hours: z.number().int().min(1).max(24 * 30).optional(),
     /** Optional free-text — when choice=c the operator may type a rationale. */
     rationale: z.string().optional(),
 };

package/dist/mcp/schemas.js.map

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package/dist/mcp/tools/append-run-note.js

@@ -10,11 +10,16 @@
  */
 import { appendFileSync, existsSync } from "node:fs";
 import { join } from "node:path";
+import { withWriteLock } from "../../lock.js";
+import { requireBootstrap } from "../bootstrap-guard.js";
 import { mcpError } from "../errors.js";
 import { isAppendAllowed, relPosix, safeJoin } from "../path-allowlist.js";
 import { appendRunNoteInput } from "../schemas.js";
 const RUN_ID_RE = /^[A-Za-z0-9_-]+$/;
 async function handler(ctx, input) {
+    const block = requireBootstrap(ctx.repoRoot);
+    if (block !== null)
+        return block;
     if (!RUN_ID_RE.test(input.run_id) || input.run_id.length > 80) {
         return mcpError("VALIDATION_FAILED", `run_id must match path-safe pattern [A-Za-z0-9_-] (≤80 chars)`);
     }
@@ -31,12 +36,14 @@ async function handler(ctx, input) {
         return mcpError("RUN_NOT_FOUND", `No active task dir at .cairn/tasks/active/${input.run_id}/`);
     }
     const entry = `\n## ${new Date().toISOString()} [${input.phase}]\n${input.note}\n`;
-    appendFileSync(abs, entry, "utf8");
-    return {
-        ok: true,
-        path: relCanon,
-        bytes_written: Buffer.byteLength(entry, "utf8"),
-    };
+    return withWriteLock(ctx.repoRoot, () => {
+        appendFileSync(abs, entry, "utf8");
+        return {
+            ok: true,
+            path: relCanon,
+            bytes_written: Buffer.byteLength(entry, "utf8"),
+        };
+    });
 }
 export const appendRunNoteTool = {
     name: "cairn_append_run_note",

package/dist/mcp/tools/append-run-note.js.map

@@ -1 +1 @@
-{"version":3,"file":"append-run-note.js","sourceRoot":"","sources":["../../../src/mcp/tools/append-run-note.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAEH,OAAO,EAAE,cAAc,EAAE,UAAU,EAAE,MAAM,SAAS,CAAC;AACrD,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AAEjC,OAAO,EAAE,QAAQ,EAAE,MAAM,cAAc,CAAC;AACxC,OAAO,EAAE,eAAe,EAAE,QAAQ,EAAE,QAAQ,EAAE,MAAM,sBAAsB,CAAC;AAC3E,OAAO,EAAE,kBAAkB,EAAE,MAAM,eAAe,CAAC;AASnD,MAAM,SAAS,GAAG,kBAAkB,CAAC;AAErC,KAAK,UAAU,OAAO,CAAC,GAAe,EAAE,KAAY;IAClD,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,IAAI,KAAK,CAAC,MAAM,CAAC,MAAM,GAAG,EAAE,EAAE,CAAC;QAC9D,OAAO,QAAQ,CACb,mBAAmB,EACnB,+DAA+D,CAChE,CAAC;IACJ,CAAC;IAED,MAAM,GAAG,GAAG,uBAAuB,KAAK,CAAC,MAAM,WAAW,CAAC;IAC3D,MAAM,GAAG,GAAG,QAAQ,CAAC,GAAG,CAAC,QAAQ,EAAE,GAAG,CAAC,CAAC;IACxC,IAAI,OAAO,GAAG,KAAK,QAAQ;QAAE,OAAO,GAAG,CAAC,CAAC,iBAAiB;IAE1D,MAAM,QAAQ,GAAG,QAAQ,CAAC,GAAG,CAAC,QAAQ,EAAE,GAAG,CAAC,CAAC;IAC7C,IAAI,CAAC,eAAe,CAAC,QAAQ,CAAC,EAAE,CAAC;QAC/B,OAAO,QAAQ,CACb,kBAAkB,EAClB,oCAAoC,QAAQ,IAAI,CACjD,CAAC;IACJ,CAAC;IAED,MAAM,OAAO,GAAG,IAAI,CAAC,GAAG,CAAC,QAAQ,EAAE,QAAQ,EAAE,OAAO,EAAE,QAAQ,EAAE,KAAK,CAAC,MAAM,CAAC,CAAC;IAC9E,IAAI,CAAC,UAAU,CAAC,OAAO,CAAC,EAAE,CAAC;QACzB,OAAO,QAAQ,CACb,eAAe,EACf,6CAA6C,KAAK,CAAC,MAAM,GAAG,CAC7D,CAAC;IACJ,CAAC;IAED,MAAM,KAAK,GAAG,QAAQ,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE,KAAK,KAAK,CAAC,KAAK,MAAM,KAAK,CAAC,IAAI,IAAI,CAAC;IACnF,cAAc,CAAC,GAAG,EAAE,KAAK,EAAE,MAAM,CAAC,CAAC;IACnC,OAAO;QACL,EAAE,EAAE,IAAI;QACR,IAAI,EAAE,QAAQ;QACd,aAAa,EAAE,MAAM,CAAC,UAAU,CAAC,KAAK,EAAE,MAAM,CAAC;KAChD,CAAC;AACJ,CAAC;AAED,MAAM,CAAC,MAAM,iBAAiB,GAAmB;IAC/C,IAAI,EAAE,uBAAuB;IAC7B,WAAW,EACT,2OAA2O;IAC7O,WAAW,EAAE,kBAAkB;IAC/B,OAAO;CACR,CAAC"}
+{"version":3,"file":"append-run-note.js","sourceRoot":"","sources":["../../../src/mcp/tools/append-run-note.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAEH,OAAO,EAAE,cAAc,EAAE,UAAU,EAAE,MAAM,SAAS,CAAC;AACrD,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AACjC,OAAO,EAAE,aAAa,EAAE,MAAM,eAAe,CAAC;AAC9C,OAAO,EAAE,gBAAgB,EAAE,MAAM,uBAAuB,CAAC;AAEzD,OAAO,EAAE,QAAQ,EAAE,MAAM,cAAc,CAAC;AACxC,OAAO,EAAE,eAAe,EAAE,QAAQ,EAAE,QAAQ,EAAE,MAAM,sBAAsB,CAAC;AAC3E,OAAO,EAAE,kBAAkB,EAAE,MAAM,eAAe,CAAC;AASnD,MAAM,SAAS,GAAG,kBAAkB,CAAC;AAErC,KAAK,UAAU,OAAO,CAAC,GAAe,EAAE,KAAY;IAClD,MAAM,KAAK,GAAG,gBAAgB,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC;IAC7C,IAAI,KAAK,KAAK,IAAI;QAAE,OAAO,KAAK,CAAC;IAEjC,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,IAAI,KAAK,CAAC,MAAM,CAAC,MAAM,GAAG,EAAE,EAAE,CAAC;QAC9D,OAAO,QAAQ,CACb,mBAAmB,EACnB,+DAA+D,CAChE,CAAC;IACJ,CAAC;IAED,MAAM,GAAG,GAAG,uBAAuB,KAAK,CAAC,MAAM,WAAW,CAAC;IAC3D,MAAM,GAAG,GAAG,QAAQ,CAAC,GAAG,CAAC,QAAQ,EAAE,GAAG,CAAC,CAAC;IACxC,IAAI,OAAO,GAAG,KAAK,QAAQ;QAAE,OAAO,GAAG,CAAC,CAAC,iBAAiB;IAE1D,MAAM,QAAQ,GAAG,QAAQ,CAAC,GAAG,CAAC,QAAQ,EAAE,GAAG,CAAC,CAAC;IAC7C,IAAI,CAAC,eAAe,CAAC,QAAQ,CAAC,EAAE,CAAC;QAC/B,OAAO,QAAQ,CACb,kBAAkB,EAClB,oCAAoC,QAAQ,IAAI,CACjD,CAAC;IACJ,CAAC;IAED,MAAM,OAAO,GAAG,IAAI,CAAC,GAAG,CAAC,QAAQ,EAAE,QAAQ,EAAE,OAAO,EAAE,QAAQ,EAAE,KAAK,CAAC,MAAM,CAAC,CAAC;IAC9E,IAAI,CAAC,UAAU,CAAC,OAAO,CAAC,EAAE,CAAC;QACzB,OAAO,QAAQ,CACb,eAAe,EACf,6CAA6C,KAAK,CAAC,MAAM,GAAG,CAC7D,CAAC;IACJ,CAAC;IAED,MAAM,KAAK,GAAG,QAAQ,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE,KAAK,KAAK,CAAC,KAAK,MAAM,KAAK,CAAC,IAAI,IAAI,CAAC;IACnF,OAAO,aAAa,CAAC,GAAG,CAAC,QAAQ,EAAE,GAAG,EAAE;QACtC,cAAc,CAAC,GAAG,EAAE,KAAK,EAAE,MAAM,CAAC,CAAC;QACnC,OAAO;YACL,EAAE,EAAE,IAAI;YACR,IAAI,EAAE,QAAQ;YACd,aAAa,EAAE,MAAM,CAAC,UAAU,CAAC,KAAK,EAAE,MAAM,CAAC;SAChD,CAAC;IACJ,CAAC,CAAC,CAAC;AACL,CAAC;AAED,MAAM,CAAC,MAAM,iBAAiB,GAAmB;IAC/C,IAAI,EAAE,uBAAuB;IAC7B,WAAW,EACT,2OAA2O;IAC7O,WAAW,EAAE,kBAAkB;IAC/B,OAAO;CACR,CAAC"}

package/dist/mcp/tools/drop-task.js

@@ -61,7 +61,7 @@ async function handler(ctx, input) {
 }
 export const dropTaskTool = {
     name: "cairn_drop_task",
-    description: "Create a new active task — writes spec.md + status.yaml under .cairn/tasks/active/<id>/. Used by spec-planner subagent. Operator-issued tasks come via the frontend adapter, not this tool.",
+    description: "Create a new active task — writes spec.md + status.yaml under .cairn/tasks/active/<id>/.",
     inputSchema: dropTaskInput,
     handler,
 };