@isaacriehm/cairn-core 0.1.0

package/dist/init/source-comments/ingest.js

@@ -0,0 +1,236 @@
+/**
+ * Phase 7b orchestrator — walker → classifier → persist.
+ *
+ * Output:
+ *   - DEC drafts (one per "rationale" classification with non-empty title)
+ *     written to `.cairn/ground/decisions/_inbox/<id>.draft.md`
+ *   - Invariant proposals appended to
+ *     `.cairn/baseline/invariant-proposals-<ISO>.yaml`
+ *   - Canonical-map citations appended to
+ *     `.cairn/baseline/canonical-citations-<ISO>.yaml`
+ *   - Full audit (every block + classification) at
+ *     `.cairn/baseline/source-comments-<ISO>.yaml` — consumed by the
+ *     strip-replace stage so it doesn't have to re-walk.
+ */
+import { mkdirSync, writeFileSync } from "node:fs";
+import { dirname, join } from "node:path";
+import { stringify as stringifyYaml } from "yaml";
+import { allocateDecisionId, scanExistingDecisionIds, } from "../../decision-capture/id.js";
+import { decisionsDir } from "../../ground/paths.js";
+import { logger } from "../../logger.js";
+import { classifyBlocks } from "./classify.js";
+import { walkSourceComments } from "./walker.js";
+const log = logger("init.source-comments.ingest");
+/* -------------------------------------------------------------------------- */
+/* Public                                                                     */
+/* -------------------------------------------------------------------------- */
+export async function runSourceCommentsIngestion(args) {
+    const repoRoot = args.repoRoot;
+    const nowIso = args.nowIso ?? new Date().toISOString();
+    const tsSlug = nowIso.replace(/[:.]/g, "-").slice(0, 19);
+    const walkOpts = { repoRoot };
+    if (args.walkOptions?.fileCap !== undefined) {
+        walkOpts.fileCap = args.walkOptions.fileCap;
+    }
+    if (args.walkOptions?.onlyFiles !== undefined) {
+        walkOpts.onlyFiles = args.walkOptions.onlyFiles;
+    }
+    const walk = walkSourceComments(walkOpts);
+    const classifyResult = await classifyBlocks({
+        blocks: walk.blocks,
+        ...(args.mockClassify !== undefined ? { mockClassify: args.mockClassify } : {}),
+        ...(args.onBatchProgress !== undefined
+            ? { onBatchProgress: args.onBatchProgress }
+            : {}),
+    });
+    const kindCounts = {
+        rationale: 0,
+        constraint: 0,
+        citation: 0,
+        license: 0,
+        other: 0,
+    };
+    for (const c of classifyResult.classifications) {
+        if (c === undefined)
+            continue;
+        kindCounts[c.kind] = (kindCounts[c.kind] ?? 0) + 1;
+    }
+    const decDraftsWritten = [];
+    const invariantProposals = [];
+    const canonicalCitations = [];
+    const existingIds = scanExistingDecisionIds(repoRoot);
+    for (let i = 0; i < walk.blocks.length; i++) {
+        const block = walk.blocks[i];
+        const cls = classifyResult.classifications[i];
+        if (block === undefined || cls === undefined)
+            continue;
+        if (cls.kind === "rationale" && cls.suggestedDecDraft.length > 0) {
+            const id = allocateDecisionId(repoRoot, existingIds);
+            existingIds.add(id);
+            if (args.dryRun !== true) {
+                const written = writeDecDraft({
+                    repoRoot,
+                    id,
+                    block,
+                    classification: cls,
+                    generatedAt: nowIso,
+                });
+                decDraftsWritten.push({
+                    id,
+                    path: written.relPath,
+                    sourceFile: block.file,
+                });
+            }
+            else {
+                decDraftsWritten.push({
+                    id,
+                    path: `.cairn/ground/decisions/_inbox/${id}.draft.md`,
+                    sourceFile: block.file,
+                });
+            }
+        }
+        if (cls.kind === "constraint" && cls.suggestedInvariant.length > 0) {
+            invariantProposals.push({
+                block_id: block.id,
+                source_file: block.file,
+                start_line: block.startLine,
+                end_line: block.endLine,
+                proposed: cls.suggestedInvariant,
+                canonical_topic: cls.suggestedCanonicalTopic,
+            });
+        }
+        if (cls.kind === "citation" && cls.suggestedCanonicalTopic.length > 0) {
+            canonicalCitations.push({
+                block_id: block.id,
+                source_file: block.file,
+                start_line: block.startLine,
+                end_line: block.endLine,
+                topic: cls.suggestedCanonicalTopic,
+                excerpt: block.prose.slice(0, 240),
+            });
+        }
+    }
+    const auditRelPath = `.cairn/baseline/source-comments-${tsSlug}.yaml`;
+    const auditPath = join(repoRoot, auditRelPath);
+    let invariantProposalsPath = null;
+    let canonicalCitationsPath = null;
+    if (args.dryRun !== true) {
+        writeYaml(auditPath, {
+            run_at: nowIso,
+            files_scanned: walk.files.length,
+            blocks_detected: walk.blocks.length,
+            bytes_scanned: walk.bytesScanned,
+            file_count_by_lang: walk.fileCountByLang,
+            kind_counts: kindCounts,
+            batches_run: classifyResult.batchesRun,
+            batches_failed: classifyResult.batchesFailed,
+            input_tokens: classifyResult.inputTokens,
+            output_tokens: classifyResult.outputTokens,
+            blocks: walk.blocks.map((b, idx) => ({
+                block_id: b.id,
+                file: b.file,
+                lang: b.lang,
+                kind: b.kind,
+                start_line: b.startLine,
+                end_line: b.endLine,
+                line_count: b.lineCount,
+                char_count: b.charCount,
+                word_count: b.wordCount,
+                start_offset: b.startOffset,
+                end_offset: b.endOffset,
+                classification: classifyResult.classifications[idx] ?? null,
+            })),
+        });
+        if (invariantProposals.length > 0) {
+            const rel = `.cairn/baseline/invariant-proposals-${tsSlug}.yaml`;
+            invariantProposalsPath = join(repoRoot, rel);
+            writeYaml(invariantProposalsPath, {
+                run_at: nowIso,
+                proposals: invariantProposals,
+            });
+        }
+        if (canonicalCitations.length > 0) {
+            const rel = `.cairn/baseline/canonical-citations-${tsSlug}.yaml`;
+            canonicalCitationsPath = join(repoRoot, rel);
+            writeYaml(canonicalCitationsPath, {
+                run_at: nowIso,
+                citations: canonicalCitations,
+            });
+        }
+    }
+    log.info({
+        files: walk.files.length,
+        blocks: walk.blocks.length,
+        kindCounts,
+        decDrafts: decDraftsWritten.length,
+        invariantProposals: invariantProposals.length,
+        canonicalCitations: canonicalCitations.length,
+        inputTokens: classifyResult.inputTokens,
+        outputTokens: classifyResult.outputTokens,
+    }, "source-comments ingestion complete");
+    return {
+        walk,
+        classifications: classifyResult.classifications,
+        decDraftsWritten,
+        invariantProposalsAdded: invariantProposals.length,
+        canonicalCitationsAdded: canonicalCitations.length,
+        auditPath,
+        auditRelPath,
+        invariantProposalsPath,
+        canonicalCitationsPath,
+        inputTokens: classifyResult.inputTokens,
+        outputTokens: classifyResult.outputTokens,
+        batchesRun: classifyResult.batchesRun,
+        batchesFailed: classifyResult.batchesFailed,
+        kindCounts,
+    };
+}
+function writeDecDraft(args) {
+    const dir = decisionsDir(args.repoRoot);
+    const inboxDir = join(dir, "_inbox");
+    mkdirSync(inboxDir, { recursive: true });
+    const filename = `${args.id}.draft.md`;
+    const abs = join(inboxDir, filename);
+    const rel = `.cairn/ground/decisions/_inbox/${filename}`;
+    const fm = {
+        id: args.id,
+        title: args.classification.suggestedDecDraft || `(untitled — from ${args.block.file})`,
+        type: "adr",
+        status: "draft-from-source-comment",
+        audience: "dual",
+        generated: args.generatedAt,
+        "verified-at": args.generatedAt,
+        decided_at: args.generatedAt,
+        decided_by: "cairn-init",
+        capture_source: "init-source-comments",
+        capture_confidence: "medium",
+        sourceFile: args.block.file,
+        sourceRange: `${args.block.startLine}-${args.block.endLine}`,
+        blockId: args.block.id,
+        canonicalTopic: args.classification.suggestedCanonicalTopic,
+    };
+    const lines = [];
+    lines.push("---");
+    lines.push(stringifyYaml(fm).trimEnd());
+    lines.push("---");
+    lines.push("");
+    lines.push(`# ${args.id} — ${fm["title"]}`);
+    lines.push("");
+    lines.push("## Source comment");
+    lines.push("");
+    lines.push("```");
+    lines.push(args.block.raw);
+    lines.push("```");
+    lines.push("");
+    lines.push("## Proposed rationale");
+    lines.push("");
+    lines.push(args.block.prose);
+    lines.push("");
+    writeFileSync(abs, lines.join("\n"), "utf8");
+    return { absPath: abs, relPath: rel };
+}
+function writeYaml(path, payload) {
+    mkdirSync(dirname(path), { recursive: true });
+    writeFileSync(path, stringifyYaml(payload), "utf8");
+}
+//# sourceMappingURL=ingest.js.map

package/dist/init/source-comments/ingest.js.map

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package/dist/init/source-comments/strip-replace.d.ts

@@ -0,0 +1,106 @@
+/**
+ * Phase 10 — deterministic strip + replace.
+ *
+ * Mechanical only. Never LLM-rewritten. Inputs are `ReplaceItem[]` produced
+ * by the caller from a `source-comments-<ISO>.yaml` audit + a resolution map
+ * (which §V or TSK to cite). Per-file consent + backup + diff preview is the
+ * caller's responsibility (the skill that surfaces inline A/B/C). This module
+ * owns the safety and replacement primitives:
+ *
+ *   1. dirty-check — `git status --porcelain` per file. Caller picks
+ *      stash / skip / overwrite per the inline prompt; we honor the decision.
+ *   2. backup — copy original to `.cairn/backups/source/<rel>.original`
+ *      before any edit (one snapshot per file, never overwritten).
+ *   3. replace — mechanical string substitution at the recorded byte range,
+ *      preserving leading indentation by default.
+ *
+ * Spec §15 + §10 + §16 for backup convention.
+ */
+export type DirtyDecision = "stash" | "skip" | "overwrite";
+export interface ReplaceItem {
+    blockId: string;
+    /** Repo-relative POSIX path. */
+    file: string;
+    /** Inclusive byte offset into the file. Must match the audit. */
+    startOffset: number;
+    /** Exclusive byte offset (one past the end of the block). */
+    endOffset: number;
+    /**
+     * Replacement comment text. Caller composes per spec §15:
+     *   - "// §V<N>" for invariant cites
+     *   - "// TODO(TSK-<id>)" for active-task links
+     *   - leave undefined (item omitted entirely) to skip stripping a block
+     *
+     * The replacer prepends the same leading indentation the original block had.
+     */
+    replacement: string;
+    /** Default true — strip the original block & re-indent the replacement. */
+    preserveIndent?: boolean;
+}
+export interface StripReplaceArgs {
+    repoRoot: string;
+    items: ReplaceItem[];
+    /**
+     * Per-file dirty-check decisions, keyed by repo-relative path. Files absent
+     * from this map and dirty are *skipped* (safe default). Files clean are
+     * always processed regardless of map presence.
+     */
+    dirtyDecisions?: Record<string, DirtyDecision>;
+    /** When true, no files are written; backup operations are skipped too. */
+    dryRun?: boolean;
+}
+export type SkipReason = "dirty-skipped" | "dirty-no-decision" | "missing-file" | "range-mismatch" | "overlap";
+export interface FileOutcome {
+    file: string;
+    /** Full new file contents — present only on success or dry-run. */
+    newContent?: string;
+    itemsApplied: number;
+    itemsSkipped: {
+        blockId: string;
+        reason: SkipReason;
+    }[];
+    backupPath?: string;
+    /** Set when the whole file was skipped (e.g. dirty + caller decided skip). */
+    fileSkipReason?: SkipReason;
+    /** Set when the file was dirty and the operator chose to stash. */
+    stashed?: boolean;
+}
+export interface StripReplaceResult {
+    files: FileOutcome[];
+    filesModified: number;
+    filesSkipped: number;
+    backupsWritten: string[];
+    itemsApplied: number;
+    itemsSkipped: number;
+}
+export declare function applyStripReplace(args: StripReplaceArgs): StripReplaceResult;
+/**
+ * Build a unified-diff-like preview without touching disk. Used by the skill
+ * before the per-module / per-file consent prompt. Returns `{ file, before,
+ * after }` per file; caller renders.
+ */
+export declare function previewStripReplace(args: {
+    repoRoot: string;
+    items: ReplaceItem[];
+}): {
+    file: string;
+    before: string;
+    after: string;
+}[];
+declare function detectOverlaps(items: ReplaceItem[]): string[];
+interface ApplyOutcome {
+    content: string;
+    applied: number;
+    skipped: {
+        blockId: string;
+        reason: SkipReason;
+    }[];
+}
+declare function applyToFileContent(original: string, items: ReplaceItem[]): ApplyOutcome;
+declare function leadingIndent(body: string, offset: number): string;
+export declare const _internal: {
+    applyToFileContent: typeof applyToFileContent;
+    detectOverlaps: typeof detectOverlaps;
+    leadingIndent: typeof leadingIndent;
+};
+export {};

package/dist/init/source-comments/strip-replace.js

@@ -0,0 +1,284 @@
+/**
+ * Phase 10 — deterministic strip + replace.
+ *
+ * Mechanical only. Never LLM-rewritten. Inputs are `ReplaceItem[]` produced
+ * by the caller from a `source-comments-<ISO>.yaml` audit + a resolution map
+ * (which §V or TSK to cite). Per-file consent + backup + diff preview is the
+ * caller's responsibility (the skill that surfaces inline A/B/C). This module
+ * owns the safety and replacement primitives:
+ *
+ *   1. dirty-check — `git status --porcelain` per file. Caller picks
+ *      stash / skip / overwrite per the inline prompt; we honor the decision.
+ *   2. backup — copy original to `.cairn/backups/source/<rel>.original`
+ *      before any edit (one snapshot per file, never overwritten).
+ *   3. replace — mechanical string substitution at the recorded byte range,
+ *      preserving leading indentation by default.
+ *
+ * Spec §15 + §10 + §16 for backup convention.
+ */
+import { execFileSync } from "node:child_process";
+import { copyFileSync, existsSync, mkdirSync, readFileSync, writeFileSync, } from "node:fs";
+import { dirname, join } from "node:path";
+import { logger } from "../../logger.js";
+const log = logger("init.source-comments.strip-replace");
+/* -------------------------------------------------------------------------- */
+/* Public                                                                     */
+/* -------------------------------------------------------------------------- */
+export function applyStripReplace(args) {
+    const byFile = groupItemsByFile(args.items);
+    const dirtyMap = computeDirtyMap(args.repoRoot, [...byFile.keys()]);
+    const outcomes = [];
+    const backupsWritten = [];
+    let filesModified = 0;
+    let filesSkipped = 0;
+    let itemsApplied = 0;
+    let itemsSkipped = 0;
+    for (const [file, items] of byFile) {
+        const abs = join(args.repoRoot, file);
+        if (!existsSync(abs)) {
+            const skipped = items.map((it) => ({
+                blockId: it.blockId,
+                reason: "missing-file",
+            }));
+            outcomes.push({
+                file,
+                itemsApplied: 0,
+                itemsSkipped: skipped,
+                fileSkipReason: "missing-file",
+            });
+            filesSkipped += 1;
+            itemsSkipped += skipped.length;
+            continue;
+        }
+        const isDirty = dirtyMap.get(file) === true;
+        let stashed = false;
+        if (isDirty) {
+            const decision = args.dirtyDecisions?.[file];
+            if (decision === undefined || decision === "skip") {
+                outcomes.push({
+                    file,
+                    itemsApplied: 0,
+                    itemsSkipped: items.map((it) => ({
+                        blockId: it.blockId,
+                        reason: decision === undefined ? "dirty-no-decision" : "dirty-skipped",
+                    })),
+                    fileSkipReason: decision === undefined ? "dirty-no-decision" : "dirty-skipped",
+                });
+                filesSkipped += 1;
+                itemsSkipped += items.length;
+                continue;
+            }
+            if (decision === "stash") {
+                const ok = stashFile(args.repoRoot, file, args.dryRun === true);
+                if (!ok) {
+                    outcomes.push({
+                        file,
+                        itemsApplied: 0,
+                        itemsSkipped: items.map((it) => ({
+                            blockId: it.blockId,
+                            reason: "dirty-skipped",
+                        })),
+                        fileSkipReason: "dirty-skipped",
+                    });
+                    filesSkipped += 1;
+                    itemsSkipped += items.length;
+                    continue;
+                }
+                stashed = true;
+            }
+            // "overwrite" falls through — we accept the destruction, caller acked it.
+        }
+        const original = readFileSync(abs, "utf8");
+        const overlapping = detectOverlaps(items);
+        if (overlapping.length > 0) {
+            const overlapIds = new Set(overlapping);
+            outcomes.push({
+                file,
+                itemsApplied: 0,
+                itemsSkipped: items.map((it) => ({
+                    blockId: it.blockId,
+                    reason: overlapIds.has(it.blockId) ? "overlap" : "range-mismatch",
+                })),
+                fileSkipReason: "overlap",
+            });
+            filesSkipped += 1;
+            itemsSkipped += items.length;
+            continue;
+        }
+        const { content, applied, skipped } = applyToFileContent(original, items);
+        if (applied === 0) {
+            outcomes.push({
+                file,
+                newContent: content,
+                itemsApplied: 0,
+                itemsSkipped: skipped,
+            });
+            filesSkipped += 1;
+            itemsSkipped += skipped.length;
+            continue;
+        }
+        let backupPath;
+        if (args.dryRun !== true) {
+            backupPath = backupOriginal(args.repoRoot, file);
+            backupsWritten.push(backupPath);
+            writeFileSync(abs, content, "utf8");
+        }
+        outcomes.push({
+            file,
+            newContent: content,
+            itemsApplied: applied,
+            itemsSkipped: skipped,
+            ...(backupPath !== undefined ? { backupPath } : {}),
+            ...(stashed ? { stashed: true } : {}),
+        });
+        filesModified += 1;
+        itemsApplied += applied;
+        itemsSkipped += skipped.length;
+    }
+    return {
+        files: outcomes,
+        filesModified,
+        filesSkipped,
+        backupsWritten,
+        itemsApplied,
+        itemsSkipped,
+    };
+}
+/**
+ * Build a unified-diff-like preview without touching disk. Used by the skill
+ * before the per-module / per-file consent prompt. Returns `{ file, before,
+ * after }` per file; caller renders.
+ */
+export function previewStripReplace(args) {
+    const byFile = groupItemsByFile(args.items);
+    const out = [];
+    for (const [file, items] of byFile) {
+        const abs = join(args.repoRoot, file);
+        if (!existsSync(abs))
+            continue;
+        const before = readFileSync(abs, "utf8");
+        const overlap = detectOverlaps(items);
+        if (overlap.length > 0) {
+            out.push({ file, before, after: before });
+            continue;
+        }
+        const { content } = applyToFileContent(before, items);
+        out.push({ file, before, after: content });
+    }
+    return out;
+}
+/* -------------------------------------------------------------------------- */
+/* Internals                                                                  */
+/* -------------------------------------------------------------------------- */
+function groupItemsByFile(items) {
+    const m = new Map();
+    for (const it of items) {
+        const list = m.get(it.file);
+        if (list !== undefined)
+            list.push(it);
+        else
+            m.set(it.file, [it]);
+    }
+    return m;
+}
+function detectOverlaps(items) {
+    const sorted = [...items].sort((a, b) => a.startOffset - b.startOffset);
+    const offenders = [];
+    for (let i = 1; i < sorted.length; i++) {
+        const prev = sorted[i - 1];
+        const cur = sorted[i];
+        if (prev === undefined || cur === undefined)
+            continue;
+        if (cur.startOffset < prev.endOffset) {
+            offenders.push(prev.blockId, cur.blockId);
+        }
+    }
+    return offenders;
+}
+function applyToFileContent(original, items) {
+    // Apply right-to-left so earlier offsets remain valid as we mutate.
+    const sorted = [...items].sort((a, b) => b.startOffset - a.startOffset);
+    let content = original;
+    let applied = 0;
+    const skipped = [];
+    for (const it of sorted) {
+        if (it.startOffset < 0 || it.endOffset > content.length) {
+            skipped.push({ blockId: it.blockId, reason: "range-mismatch" });
+            continue;
+        }
+        const indent = leadingIndent(content, it.startOffset);
+        const preserve = it.preserveIndent !== false;
+        const replacement = preserve ? `${indent}${it.replacement}` : it.replacement;
+        content =
+            content.slice(0, it.startOffset - indent.length) +
+                replacement +
+                content.slice(it.endOffset);
+        applied += 1;
+    }
+    return { content, applied, skipped };
+}
+function leadingIndent(body, offset) {
+    let i = offset;
+    while (i > 0 && (body[i - 1] === " " || body[i - 1] === "\t"))
+        i -= 1;
+    return body.slice(i, offset);
+}
+function backupOriginal(repoRoot, relFile) {
+    const backupRel = join(".cairn", "backups", "source", `${relFile}.original`);
+    const abs = join(repoRoot, backupRel);
+    if (existsSync(abs)) {
+        log.debug({ file: relFile, backup: backupRel }, "backup exists — skipping copy");
+        return abs;
+    }
+    mkdirSync(dirname(abs), { recursive: true });
+    copyFileSync(join(repoRoot, relFile), abs);
+    return abs;
+}
+function computeDirtyMap(repoRoot, files) {
+    const out = new Map();
+    if (files.length === 0)
+        return out;
+    try {
+        const argsList = ["status", "--porcelain", "--", ...files];
+        const result = execFileSync("git", argsList, {
+            cwd: repoRoot,
+            encoding: "utf8",
+            maxBuffer: 8 * 1024 * 1024,
+        });
+        const dirty = new Set();
+        for (const line of result.split("\n")) {
+            if (line.length === 0)
+                continue;
+            // " M path/to/file" or "?? path/to/file"
+            const path = line.slice(3).trim().replace(/^"(.*)"$/, "$1");
+            if (path.length > 0)
+                dirty.add(path);
+        }
+        for (const f of files)
+            out.set(f, dirty.has(f));
+    }
+    catch (err) {
+        log.warn({ err: err instanceof Error ? err.message : String(err) }, "git status failed — assuming all files clean");
+        for (const f of files)
+            out.set(f, false);
+    }
+    return out;
+}
+function stashFile(repoRoot, relFile, dryRun) {
+    if (dryRun)
+        return true;
+    try {
+        execFileSync("git", ["stash", "push", "--keep-index", "-m", `cairn-strip-replace ${relFile}`, "--", relFile], { cwd: repoRoot, encoding: "utf8" });
+        return true;
+    }
+    catch (err) {
+        log.warn({ file: relFile, err: err instanceof Error ? err.message : String(err) }, "git stash failed");
+        return false;
+    }
+}
+export const _internal = {
+    applyToFileContent,
+    detectOverlaps,
+    leadingIndent,
+};
+//# sourceMappingURL=strip-replace.js.map

package/dist/init/source-comments/strip-replace.js.map

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