@iowarp/clio-coder 0.4.1 → 0.4.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (437) hide show
  1. package/CHANGELOG.md +92 -0
  2. package/CONTRIBUTING.md +59 -36
  3. package/README.md +404 -472
  4. package/SECURITY.md +2 -1
  5. package/dist/{acp-ZILU3AUO.js → acp-TMDQZDIG.js} +7 -7
  6. package/dist/{agents-HYWGBGQR.js → agents-5N5NG3XG.js} +28 -28
  7. package/dist/assets/codewiki.json +1 -1
  8. package/dist/{auth-N3QT7CBO.js → auth-Z5CCBXKQ.js} +8 -9
  9. package/dist/{builtins-UJLMOVOV.js → builtins-K6TNDT24.js} +4 -4
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  92. package/dist/{chunk-7RY5VZPH.js → chunk-ZW4HH5JJ.js} +6 -6
  93. package/dist/cli/index.js +33 -32
  94. package/dist/{clio-IT3G3VQH.js → clio-7VB377CC.js} +7 -7
  95. package/dist/{code-nav-RK6S7F6E.js → code-nav-YVLCYA7V.js} +85 -17
  96. package/dist/{config-3QZRWZJF.js → config-4HVOS65E.js} +88 -43
  97. package/dist/{configure-FL7Y3KJF.js → configure-PIWO7B24.js} +10 -10
  98. package/dist/{context-5HE7ODYK.js → context-IYEHL3WQ.js} +33 -31
  99. package/dist/{context-XNHL75JV.js → context-KQYIWPWT.js} +47 -34
  100. package/dist/{context-KYQFRVDC.js → context-N6ZE3LGJ.js} +11 -11
  101. package/dist/{context-clear-N545L53A.js → context-clear-G4OGZJDS.js} +33 -31
  102. package/dist/{context-working-set-QHKXSV2F.js → context-working-set-BWLF6LJP.js} +7 -7
  103. package/dist/{dispatch-runner-RGIE5PCT.js → dispatch-runner-2QQAITS3.js} +38 -38
  104. package/dist/{docs-5NAF6AU7.js → docs-PD3EXDKU.js} +21 -20
  105. package/dist/{doctor-ZGPEGHIP.js → doctor-LHBD36VU.js} +23 -22
  106. package/dist/{eval-GXLL44RD.js → eval-C45FYRJ6.js} +21 -20
  107. package/dist/{eval-inventory-HBWSWQOK.js → eval-inventory-6DEJPLBF.js} +2 -2
  108. package/dist/{evidence-HWLBRH3Q.js → evidence-6SHONYAF.js} +30 -28
  109. package/dist/{evolve-FTZBMNVW.js → evolve-KRKMV72X.js} +30 -28
  110. package/dist/{extensions-VHRBEID7.js → extensions-KPZ2UHBB.js} +5 -3
  111. package/dist/{fleet-CKZHJWZJ.js → fleet-IVTCKDHT.js} +62 -61
  112. package/dist/{fleet-commands-EXDXBMV6.js → fleet-commands-EDWL3IT7.js} +5 -5
  113. package/dist/{fleet-decisions-OTHB6KRL.js → fleet-decisions-YP3YEFGK.js} +4 -4
  114. package/dist/{fleet-graph-YTEZUCUT.js → fleet-graph-ZFWKHY2M.js} +16 -14
  115. package/dist/{fleet-inspect-SS6YMDCK.js → fleet-inspect-FVUNCBML.js} +31 -29
  116. package/dist/{fleet-preflight-PBY4VYOM.js → fleet-preflight-UN5XED4R.js} +2 -2
  117. package/dist/{fleet-validate-KMEM5L3S.js → fleet-validate-XOWC4HSX.js} +17 -15
  118. package/dist/{fleet-verify-QD5M7E7Q.js → fleet-verify-UN3SODEL.js} +30 -28
  119. package/dist/{fleet-view-WAMJYNDT.js → fleet-view-TWHJKCN6.js} +31 -29
  120. package/dist/{init-5XQRBOFV.js → init-T2QORQ3Y.js} +50 -49
  121. package/dist/{interop-34TVO25M.js → interop-IN5I2A66.js} +5 -5
  122. package/dist/{library-3QY6KF57.js → library-LSCATDLZ.js} +15 -13
  123. package/dist/{memory-L4UTIIIW.js → memory-HYOKAGGJ.js} +31 -29
  124. package/dist/{models-ZVX3QOWE.js → models-2GPMFYCM.js} +22 -21
  125. package/dist/{monitor-CEKVSYTS.js → monitor-E4ASVUJH.js} +34 -32
  126. package/dist/{orchestrator-77BAP6BC.js → orchestrator-DDMPR3PY.js} +984 -583
  127. package/dist/{panes-7STHOAUJ.js → panes-E3RUXOW5.js} +4 -4
  128. package/dist/{panes-SHAUIRXY.js → panes-IXKLOKA2.js} +23 -8
  129. package/dist/{reset-EOLM7GVE.js → reset-OAQP3W4O.js} +4 -4
  130. package/dist/{resources-74GKTLSF.js → resources-OTRSN34L.js} +15 -13
  131. package/dist/{run-HBAUJNNZ.js → run-5DEYH5QK.js} +60 -59
  132. package/dist/{share-G3APVLVP.js → share-IHWTLO3M.js} +19 -15
  133. package/dist/{skills-35HHUKCR.js → skills-IYMXMKW4.js} +17 -15
  134. package/dist/{skills-eval-QN4HSHDC.js → skills-eval-DROHSJAR.js} +36 -36
  135. package/dist/{skills-inventory-J357J34F.js → skills-inventory-D7X4L4ZX.js} +15 -13
  136. package/dist/{slash-commands-JZZCQA32.js → slash-commands-QBM7UZ3B.js} +21 -18
  137. package/dist/{steer-XAVHJM22.js → steer-Z5DO23FJ.js} +2 -2
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  139. package/dist/{terminal-lease-JOPFUVEM.js → terminal-lease-YREJ3JX2.js} +5 -5
  140. package/dist/{tools-MKNWVPBH.js → tools-5B7RO6MV.js} +4 -4
  141. package/dist/{trace-ECQ7TIYZ.js → trace-YMGMUM6A.js} +55 -7
  142. package/dist/{upgrade-H7TOM7YL.js → upgrade-PXK3S2YM.js} +11 -9
  143. package/dist/{usage-X52N3IDJ.js → usage-ME5MPXGX.js} +36 -34
  144. package/dist/{verifiers-EJTVVSMA.js → verifiers-BVZ7IWOO.js} +5 -5
  145. package/dist/{verify-YJL6XET2.js → verify-5K7ZKQFC.js} +4 -4
  146. package/dist/{web-fetch-MPIFL3LL.js → web-fetch-MPARV2K7.js} +2 -2
  147. package/dist/{wiki-generate-4NDZTQ4B.js → wiki-generate-F5W5QTYY.js} +48 -47
  148. package/dist/{with-panes-OBOBFIIR.js → with-panes-BYOJCLAM.js} +51 -255
  149. package/dist/worker/entry.js +45 -30
  150. package/docs/README.md +176 -81
  151. package/docs/{acp.md → architecture/acp.md} +36 -20
  152. package/docs/{alcf-provider.md → architecture/alcf-provider.md} +8 -5
  153. package/docs/{architecture.md → architecture/architecture.md} +43 -22
  154. package/docs/{artifact-placement.md → architecture/artifact-placement.md} +26 -23
  155. package/docs/architecture/artifact-versions.md +90 -0
  156. package/docs/{capacity-and-scheduling.md → architecture/capacity-and-scheduling.md} +26 -13
  157. package/docs/{context-engine.md → architecture/context-engine.md} +25 -25
  158. package/docs/{context-working-set.md → architecture/context-working-set.md} +13 -10
  159. package/docs/{dispatch-architecture-rationale.md → architecture/dispatch-architecture-rationale.md} +12 -9
  160. package/docs/{dispatch-typed-intent.md → architecture/dispatch-typed-intent.md} +68 -46
  161. package/docs/{evidence-and-memory.md → architecture/evidence-and-memory.md} +23 -16
  162. package/docs/{middleware-and-components.md → architecture/middleware-and-components.md} +11 -5
  163. package/docs/{model-catalog.md → architecture/model-catalog.md} +40 -17
  164. package/docs/{observability.md → architecture/observability.md} +26 -13
  165. package/docs/{pi-boundary.md → architecture/pi-boundary.md} +24 -11
  166. package/docs/{prompt-envelope-and-tools.md → architecture/prompt-envelope-and-tools.md} +55 -20
  167. package/docs/{provider-adapter-cookbook.md → architecture/provider-adapter-cookbook.md} +35 -24
  168. package/docs/{safety-model.md → architecture/safety-model.md} +20 -15
  169. package/docs/{session-lifecycle.md → architecture/session-lifecycle.md} +8 -5
  170. package/docs/architecture/time-conventions.md +125 -0
  171. package/docs/{trace-store.md → architecture/trace-store.md} +13 -5
  172. package/docs/{tui-design.md → architecture/tui-design.md} +13 -13
  173. package/docs/{worker-dispatch-mechanics.md → architecture/worker-dispatch-mechanics.md} +27 -30
  174. package/docs/{built-in-agents.md → guide/built-in-agents.md} +50 -34
  175. package/docs/{commands-and-modes.md → guide/commands-and-modes.md} +65 -60
  176. package/docs/{configuration-and-targets.md → guide/configuration-and-targets.md} +227 -289
  177. package/docs/guide/configuration-reference.md +1158 -0
  178. package/docs/{environment-variables.md → guide/environment-variables.md} +31 -28
  179. package/docs/{exit-codes-and-output.md → guide/exit-codes-and-output.md} +6 -3
  180. package/docs/{extensions-and-sharing.md → guide/extensions-and-sharing.md} +41 -14
  181. package/docs/{fleet-dispatch.md → guide/fleet-dispatch.md} +39 -43
  182. package/docs/{glossary.md → guide/glossary.md} +14 -11
  183. package/docs/{installation-and-lifecycle.md → guide/installation-and-lifecycle.md} +44 -13
  184. package/docs/guide/panes-and-files.md +290 -0
  185. package/docs/{proactive-memory.md → guide/proactive-memory.md} +79 -66
  186. package/docs/{resource-library.md → guide/resource-library.md} +13 -4
  187. package/docs/{skills-marketplace.md → guide/skills-marketplace.md} +7 -3
  188. package/docs/{tool-usage.md → guide/tool-usage.md} +87 -23
  189. package/docs/{troubleshooting.md → guide/troubleshooting.md} +9 -4
  190. package/docs/{config-knobs-audit.md → history/config-knobs-audit.md} +11 -11
  191. package/docs/{release-cut-checklist.md → history/release-cut-checklist.md} +29 -2
  192. package/docs/{development-pipeline.md → process/development-pipeline.md} +24 -26
  193. package/docs/process/documentation-coverage.md +100 -0
  194. package/docs/process/documentation-guide.md +187 -0
  195. package/docs/{eval-runner.md → process/eval-runner.md} +41 -50
  196. package/docs/{evals-internal.md → process/evals-internal.md} +10 -10
  197. package/docs/{evolution.md → process/evolution.md} +2 -2
  198. package/docs/{fleet-demo-runbook.md → process/fleet-demo-runbook.md} +11 -7
  199. package/docs/{git-commit-provenance.md → process/git-commit-provenance.md} +11 -4
  200. package/docs/{performance-methodology.md → process/performance-methodology.md} +87 -69
  201. package/docs/{scientific-validation.md → process/scientific-validation.md} +4 -4
  202. package/evals/README.md +2 -2
  203. package/package.json +9 -7
  204. package/skills/README.md +46 -37
  205. package/skills/coding/ast-grep/SKILL.md +2 -2
  206. package/skills/coding/coding-standards/SKILL.md +2 -2
  207. package/skills/coding/prototype/SKILL.md +2 -2
  208. package/skills/coding/tdd/SKILL.md +2 -2
  209. package/skills/context/context-handoff/SKILL.md +2 -2
  210. package/skills/context/context-prime/SKILL.md +2 -2
  211. package/skills/git/file-ticket/SKILL.md +2 -2
  212. package/skills/git/fix-issue/SKILL.md +3 -3
  213. package/skills/git/resolve-merge-conflicts/SKILL.md +2 -2
  214. package/skills/git/ship/SKILL.md +2 -2
  215. package/skills/git/worktree-create/SKILL.md +2 -2
  216. package/skills/git/worktree-merge/SKILL.md +2 -2
  217. package/skills/meta/clio-coder-dev/SKILL.md +9 -5
  218. package/skills/meta/clio-coder-dev/evals.md +3 -2
  219. package/skills/meta/clio-coder-test/SKILL.md +102 -95
  220. package/skills/meta/clio-coder-test/evals.md +9 -4
  221. package/skills/meta/clio-coder-test/references/harness.md +100 -124
  222. package/skills/meta/clio-coder-test/references/test-map.md +77 -50
  223. package/skills/meta/credentials/SKILL.md +2 -2
  224. package/skills/meta/find-skills/SKILL.md +2 -2
  225. package/skills/meta/herdr/SKILL.md +2 -2
  226. package/skills/meta/skill-craft/SKILL.md +22 -16
  227. package/skills/planning/architecture/SKILL.md +2 -2
  228. package/skills/planning/backlog/SKILL.md +2 -2
  229. package/skills/planning/prd/SKILL.md +2 -2
  230. package/skills/planning/product-intent/SKILL.md +2 -2
  231. package/skills/planning/tech-spec/SKILL.md +2 -2
  232. package/skills/registry.yaml +62 -62
  233. package/skills/research/arxiv-literature/SKILL.md +2 -2
  234. package/skills/research/experiment-protocol/SKILL.md +2 -2
  235. package/skills/research/scientific-debugging/SKILL.md +2 -2
  236. package/skills/research/scientific-modernization/SKILL.md +2 -2
  237. package/skills/skill-marketplace.json +62 -62
  238. package/skills/workflow/cut-it/SKILL.md +2 -2
  239. package/skills/workflow/design-council/SKILL.md +2 -2
  240. package/skills/workflow/grill-me/SKILL.md +2 -2
  241. package/skills/workflow/workflow-distiller/SKILL.md +2 -2
  242. package/src/cli/args.ts +2 -2
  243. package/src/cli/bootstrap-generate.ts +1 -1
  244. package/src/cli/config-inspect.ts +65 -12
  245. package/src/cli/configure.ts +0 -4
  246. package/src/cli/docs.ts +22 -14
  247. package/src/cli/doctor-naming.ts +5 -5
  248. package/src/cli/doctor-toolchain.ts +3 -3
  249. package/src/cli/eval.ts +1 -2
  250. package/src/cli/extensions.ts +2 -1
  251. package/src/cli/fleet.ts +1 -1
  252. package/src/cli/index.ts +2 -1
  253. package/src/cli/internal-dispatch.ts +3 -4
  254. package/src/cli/panes.ts +19 -5
  255. package/src/cli/run.ts +2 -2
  256. package/src/cli/share.ts +5 -1
  257. package/src/cli/skills-eval.ts +3 -3
  258. package/src/cli/targets.ts +2 -6
  259. package/src/cli/trace.ts +55 -4
  260. package/src/cli/wiki-generate.ts +1 -1
  261. package/src/core/artifact-paths.ts +1 -1
  262. package/src/core/bash-exec.ts +131 -86
  263. package/src/core/bus-events.ts +51 -6
  264. package/src/core/config.ts +5 -1
  265. package/src/core/defaults.ts +7 -4
  266. package/src/core/dispatch-outcome.ts +16 -0
  267. package/src/core/guardrails.ts +10 -49
  268. package/src/core/prompt-hint.ts +9 -0
  269. package/src/domains/agents/builtins/architect.md +2 -3
  270. package/src/domains/agents/builtins/coder.md +3 -2
  271. package/src/domains/agents/builtins/debugger.md +2 -2
  272. package/src/domains/agents/builtins/documenter.md +2 -2
  273. package/src/domains/agents/builtins/git-master.md +1 -1
  274. package/src/domains/agents/builtins/oracle.md +1 -1
  275. package/src/domains/agents/builtins/provenance.md +1 -1
  276. package/src/domains/agents/builtins/researcher.md +1 -1
  277. package/src/domains/agents/builtins/scout.md +1 -1
  278. package/src/domains/agents/builtins/tester.md +2 -2
  279. package/src/domains/agents/builtins/verifier.md +2 -2
  280. package/src/domains/agents/builtins/wiki-writer.md +1 -1
  281. package/src/domains/agents/catalog.ts +12 -14
  282. package/src/domains/agents/contract.ts +2 -0
  283. package/src/domains/agents/extension.ts +23 -1
  284. package/src/domains/config/keybindings.ts +8 -0
  285. package/src/domains/context/extension.ts +0 -3
  286. package/src/domains/context/working-set/path-index.ts +1 -0
  287. package/src/domains/dispatch/capability-match.ts +10 -0
  288. package/src/domains/dispatch/extension.ts +105 -22
  289. package/src/domains/dispatch/host-verification.ts +435 -39
  290. package/src/domains/dispatch/intent-requirements.ts +10 -0
  291. package/src/domains/dispatch/intent.ts +18 -1
  292. package/src/domains/dispatch/path-scope.ts +235 -24
  293. package/src/domains/dispatch/run-event-journal.ts +4 -15
  294. package/src/domains/dispatch/state.ts +2 -3
  295. package/src/domains/dispatch/transport.ts +45 -21
  296. package/src/domains/dispatch/types.ts +55 -3
  297. package/src/domains/eval/artifacts/store.ts +5 -0
  298. package/src/domains/eval/store.ts +8 -1
  299. package/src/domains/evidence/trust-status.ts +10 -1
  300. package/src/domains/extensions/contract.ts +15 -1
  301. package/src/domains/extensions/discovery.ts +238 -41
  302. package/src/domains/extensions/extension.ts +105 -6
  303. package/src/domains/extensions/index.ts +24 -0
  304. package/src/domains/extensions/integrity.ts +189 -0
  305. package/src/domains/extensions/manager.ts +17 -1
  306. package/src/domains/extensions/resource-path.ts +27 -0
  307. package/src/domains/extensions/resources.ts +18 -38
  308. package/src/domains/extensions/snapshot-store.ts +39 -0
  309. package/src/domains/extensions/snapshot.ts +180 -0
  310. package/src/domains/extensions/state.ts +385 -57
  311. package/src/domains/extensions/types.ts +118 -1
  312. package/src/domains/lifecycle/migrations/2026-09-01-extension-install-digests.ts +27 -0
  313. package/src/domains/lifecycle/migrations/index.ts +2 -0
  314. package/src/domains/lifecycle/naming-resources.ts +19 -4
  315. package/src/domains/lifecycle/naming-yazi.ts +10 -5
  316. package/src/domains/middleware/contract.ts +26 -0
  317. package/src/domains/middleware/extension.ts +24 -24
  318. package/src/domains/middleware/hook-receipts.ts +27 -4
  319. package/src/domains/middleware/hooks-io.ts +65 -32
  320. package/src/domains/middleware/hooks.ts +64 -0
  321. package/src/domains/middleware/index.ts +28 -4
  322. package/src/domains/middleware/registrations.ts +326 -0
  323. package/src/domains/middleware/runtime.ts +28 -0
  324. package/src/domains/middleware/snapshot.ts +20 -7
  325. package/src/domains/mux/contract.ts +38 -0
  326. package/src/domains/mux/detect.ts +6 -13
  327. package/src/domains/mux/index.ts +1 -1
  328. package/src/domains/mux/operations.ts +44 -5
  329. package/src/domains/mux/yazi/assets/yazi.toml +2 -2
  330. package/src/domains/mux/yazi/session.ts +53 -4
  331. package/src/domains/mux/yazi/theme.ts +117 -17
  332. package/src/domains/observability/contract.ts +10 -11
  333. package/src/domains/observability/extension.ts +11 -3
  334. package/src/domains/observability/projection.ts +14 -90
  335. package/src/domains/observability/trace-store.ts +43 -7
  336. package/src/domains/prompts/compiler.ts +73 -53
  337. package/src/domains/prompts/contract.ts +15 -3
  338. package/src/domains/prompts/extension.ts +97 -9
  339. package/src/domains/prompts/fragments/identity/clio-worker.md +1 -3
  340. package/src/domains/prompts/fragments/identity/clio.md +6 -12
  341. package/src/domains/prompts/fragments/identity/docs-routing.md +1 -2
  342. package/src/domains/prompts/fragments/identity/self-awareness.md +3 -11
  343. package/src/domains/prompts/fragments/operating/contract.md +7 -15
  344. package/src/domains/prompts/fragments/operating/delegation.md +32 -34
  345. package/src/domains/prompts/fragments/operating/skills.md +10 -24
  346. package/src/domains/prompts/fragments/operating/worker.md +1 -8
  347. package/src/domains/providers/index.ts +1 -1
  348. package/src/domains/providers/model-runtime-capabilities.ts +85 -21
  349. package/src/domains/providers/models/local-models/clio-coder-local-coding-targets.yaml +669 -104
  350. package/src/domains/providers/runtime-resolution.ts +31 -0
  351. package/src/domains/providers/runtimes/common/probe-helpers.ts +7 -2
  352. package/src/domains/providers/runtimes/local-native/llamacpp.ts +9 -1
  353. package/src/domains/providers/types/cost-provenance.ts +19 -0
  354. package/src/domains/providers/types/local-model-quirks.ts +85 -37
  355. package/src/domains/resources/skills/loader.ts +16 -19
  356. package/src/domains/safety/call-target.ts +1 -1
  357. package/src/domains/safety/loop-detector.ts +7 -4
  358. package/src/domains/session/task-board.ts +10 -9
  359. package/src/domains/share/archive.ts +164 -7
  360. package/src/engine/acp/server.ts +62 -9
  361. package/src/engine/apis/llamacpp-residency.ts +3 -4
  362. package/src/engine/apis/lmstudio.ts +3 -3
  363. package/src/engine/apis/ollama-native.ts +6 -6
  364. package/src/engine/apis/openai-completions.ts +28 -25
  365. package/src/engine/apis/output-budget.ts +8 -18
  366. package/src/engine/apis/residency.ts +8 -27
  367. package/src/engine/gemma-channel-filter.ts +19 -0
  368. package/src/engine/loop-guard.ts +92 -12
  369. package/src/engine/worker-runtime.ts +40 -11
  370. package/src/engine/worker-tools.ts +3 -1
  371. package/src/entry/extension-hook-sources.ts +28 -0
  372. package/src/entry/extension-reload.ts +309 -0
  373. package/src/entry/orchestrator.ts +59 -35
  374. package/src/interactive/application-controller.ts +2 -1
  375. package/src/interactive/bus-notices.ts +8 -1
  376. package/src/interactive/chat-loop-messages.ts +3 -13
  377. package/src/interactive/chat-loop.ts +10 -1
  378. package/src/interactive/chat-panel.ts +36 -13
  379. package/src/interactive/chat-renderer.ts +71 -7
  380. package/src/interactive/dispatch-board.ts +6 -11
  381. package/src/interactive/footer/widgets.ts +13 -0
  382. package/src/interactive/interactive-application.ts +39 -4
  383. package/src/interactive/interactive-input-runtime.ts +4 -0
  384. package/src/interactive/interactive-presentation.ts +2 -2
  385. package/src/interactive/interactive-slash-runtime.ts +2 -0
  386. package/src/interactive/overlays/extensions.ts +9 -1
  387. package/src/interactive/overlays/help-reference.ts +13 -0
  388. package/src/interactive/overlays/settings.ts +27 -16
  389. package/src/interactive/panes-runtime.ts +111 -35
  390. package/src/interactive/prompt-cache-identity.ts +88 -0
  391. package/src/interactive/slash-commands.ts +129 -14
  392. package/src/interactive/stream-pacing-policy.ts +0 -23
  393. package/src/interactive/turn-context.ts +30 -15
  394. package/src/interactive/yazi-bridge.ts +60 -6
  395. package/src/tools/agent-tools.ts +30 -1
  396. package/src/tools/artifact.ts +2 -2
  397. package/src/tools/ask-user.ts +3 -3
  398. package/src/tools/bash.ts +1 -1
  399. package/src/tools/bootstrap.ts +4 -0
  400. package/src/tools/builtin-tool-catalog.ts +52 -22
  401. package/src/tools/codewiki/code-nav-surface.ts +6 -0
  402. package/src/tools/codewiki/code-nav.ts +99 -13
  403. package/src/tools/context/docs-engine.ts +20 -7
  404. package/src/tools/context/index.ts +29 -12
  405. package/src/tools/core-bootstrap.ts +28 -6
  406. package/src/tools/credential-present.ts +1 -2
  407. package/src/tools/dispatch-arguments.ts +5 -1
  408. package/src/tools/dispatch-plan.ts +48 -4
  409. package/src/tools/dispatch-run-events.ts +1 -1
  410. package/src/tools/dispatch-schema.ts +338 -0
  411. package/src/tools/dispatch-types.ts +3 -0
  412. package/src/tools/dispatch.ts +9 -254
  413. package/src/tools/ledger.ts +3 -5
  414. package/src/tools/monitor-surface.ts +5 -13
  415. package/src/tools/observation.ts +4 -5
  416. package/src/tools/panes-surface.ts +4 -11
  417. package/src/tools/panes.ts +4 -2
  418. package/src/tools/policy.ts +15 -2
  419. package/src/tools/read.ts +5 -6
  420. package/src/tools/registry.ts +30 -7
  421. package/src/tools/result-shaping.ts +18 -14
  422. package/src/tools/steer-surface.ts +1 -1
  423. package/src/tools/tasks.ts +1 -1
  424. package/src/tools/truncate.ts +6 -5
  425. package/src/tools/verify/surface.ts +6 -12
  426. package/src/tools/web-fetch-surface.ts +1 -3
  427. package/dist/chunk-5QIAJV2D.js +0 -48
  428. package/dist/chunk-JZWT5J3Y.js +0 -814
  429. package/dist/chunk-K7VKOLQQ.js +0 -15
  430. package/dist/chunk-PMZCIOCJ.js +0 -25
  431. package/dist/chunk-SUW5DORT.js +0 -819
  432. package/dist/chunk-UOV2BYIW.js +0 -107
  433. package/dist/chunk-WR6U3OVP.js +0 -45
  434. package/docs/artifact-versions.md +0 -67
  435. package/docs/documentation-coverage.md +0 -46
  436. package/docs/documentation-guide.md +0 -167
  437. package/docs/time-conventions.md +0 -101
package/skills/registry.yaml CHANGED
@@ -6,131 +6,131 @@ skills:
6
6
  # ── coding ──
7
7
  - name: ast-grep
8
8
  path: coding/ast-grep
9
- version: 0.1.1
10
- sha256: 29469873f85c3f9e37e065c1968917dac02ea09817d876b7e8c4575d6bdd3c5f
9
+ version: 0.2.0
10
+ sha256: d21a4b330d1488c43348eaee7fbeec24bb8a1d7c4e536059db02fd9377c62dfa
11
11
  - name: coding-standards
12
12
  path: coding/coding-standards
13
- version: 0.1.1
14
- sha256: f616f7d92f8f4c6dadfe98b99a92981426e0fb250f3391bcfe5b7834c6ecfa31
13
+ version: 0.2.0
14
+ sha256: da21ad373252575934ad484a2926e8c7827880c9d91b4e0c656fe92d71335063
15
15
  - name: prototype
16
16
  path: coding/prototype
17
- version: 0.2.1
18
- sha256: 905911f9651344567a8fd713795024676bb3e1d18f43d3727410b251cf699931
17
+ version: 0.3.0
18
+ sha256: 151bd153752874d5970dd06bc15df14c0037631283d148195a8fa75c5a59a45b
19
19
  - name: tdd
20
20
  path: coding/tdd
21
- version: 0.2.1
22
- sha256: d9067dede9a63f81bca41487bdab9654eede76da3ef12ef770382b492eacc92c
21
+ version: 0.3.0
22
+ sha256: f3a03655864d4981791218b085d09f8fe836d0795012cf4c8c07b430730abb2a
23
23
  # ── context ──
24
24
  - name: context-handoff
25
25
  path: context/context-handoff
26
- version: 0.3.3
27
- sha256: 43a70efef5f1914373c1417e6650b8d4db82b8f5aefc7aa6f5c884f3e6b2c36e
26
+ version: 0.4.0
27
+ sha256: ba0568719d0b58bb3e1631eee72094ec0165bf2fb7f69e1e67d223ff50b364d8
28
28
  - name: context-prime
29
29
  path: context/context-prime
30
- version: 0.2.3
31
- sha256: 6fb496bf7b5f545e46fa41f10c9964312f1ab2f9d052a3bebaa6c734a70d1746
30
+ version: 0.3.0
31
+ sha256: d8413255688f1697d40231df830ce3c8947ac2a551f3e6fbb0d10158c4fa8d0e
32
32
  # ── git ──
33
33
  - name: file-ticket
34
34
  path: git/file-ticket
35
- version: 0.1.2
36
- sha256: 9c0d73cdf55b8eaff2e86e13e8e8e36a8b7428b9410fd39f7a5d27c547836f82
35
+ version: 0.2.0
36
+ sha256: 07b5d996d459c6c8c99ea44f44421d418f4738075cccd0e4b759a6f8a7daf720
37
37
  - name: fix-issue
38
38
  path: git/fix-issue
39
- version: 0.1.2
40
- sha256: d2fe942d4ffb30ee9357cd57dd815a75a98322f9d14dca32018960d4bf6c9528
39
+ version: 0.2.0
40
+ sha256: ec5e6a00056041494f9b100da8f0775455124aebc7000ed0edb7c9b8493f74c8
41
41
  - name: resolve-merge-conflicts
42
42
  path: git/resolve-merge-conflicts
43
- version: 0.2.1
44
- sha256: 22de2d0621684c6923001d66206f90d9175a56dc668e82b06942eafe7dd1d45a
43
+ version: 0.3.0
44
+ sha256: a1df7dee85ef788f257f8b8fbf4c2564cac245c3010d3f60d3b62d721d185f5e
45
45
  - name: ship
46
46
  path: git/ship
47
- version: 0.1.2
48
- sha256: 28081376480038e68ecb27bea99678f887d2deebacc4b928ba3b550f24d641d3
47
+ version: 0.2.0
48
+ sha256: 8a22f74e56a6e98c85a38051550d1e1a70c9ca5bb5cf271f4e6448f0f791e0ed
49
49
  - name: worktree-create
50
50
  path: git/worktree-create
51
- version: 0.2.1
52
- sha256: f98c7346460291969b91f53fd7f47fbab6ab649e33d921e5047239fa2936e81c
51
+ version: 0.3.0
52
+ sha256: d40bb0bb9152c4f2e391de1285b6cbd2e67a45492e2cf865b1f82910e30a6bcc
53
53
  - name: worktree-merge
54
54
  path: git/worktree-merge
55
- version: 0.2.1
56
- sha256: 6a62d4bedd0f3aae1118268ded25e5b155bd4970ab4ec08e5e4553347c9f62f1
55
+ version: 0.3.0
56
+ sha256: bca803a2484b0eac90939377c81f9e66928242f36ac2d86cef9381b1ff997f3e
57
57
  # ── meta ──
58
58
  - name: clio-coder-dev
59
59
  path: meta/clio-coder-dev
60
- version: 0.2.2
61
- sha256: 1fed5f9f3de99d9c6db68b1449bc5d89a1c729c560eecf524db764a09efab273
60
+ version: 0.4.0
61
+ sha256: 8980f3bed0f06c24685bc0a02f3ffbbcdac9442616dc3ce54122265b666ae0d7
62
62
  - name: clio-coder-test
63
63
  path: meta/clio-coder-test
64
- version: 0.1.5
65
- sha256: e7f3c83f93c62e54bc6437404ee2f2b95b5bd5541d3fb1a3e8da8fb62354eff4
64
+ version: 0.3.0
65
+ sha256: 87f6689d083080e4b80294304f2b2fd36f70ce941ab7265cb573e84e4c5e6a12
66
66
  - name: credentials
67
67
  path: meta/credentials
68
- version: 0.1.3
69
- sha256: 92b3eb621d7640b57c44babea634a970284766230cbe2a4d32f08cf385cf4b2e
68
+ version: 0.2.0
69
+ sha256: d9382790ab30c9a13e5ca451f6f6b6b81eb8bcc6d458ad4931cc0495d39ea78d
70
70
  - name: find-skills
71
71
  path: meta/find-skills
72
- version: 0.1.2
73
- sha256: 1ef7fb2dbe0585abc24f87146c9c421c5fa2180b9c7ed1a71bfd3fe8b9f12056
72
+ version: 0.2.0
73
+ sha256: a2f8469b3a15059f8547e7566dcd27894c6e2a2126b3ed83acb470df051cd11d
74
74
  - name: herdr
75
75
  path: meta/herdr
76
- version: 0.1.1
77
- sha256: 511a57533e67aa7046fb0652eb8782c351e677e4a34d947fbe6abffdc8e3e3ed
76
+ version: 0.2.0
77
+ sha256: eeda051fe8736344b480fbd0d482a0e0ab82d4fc44e7ced5ff7058378beae3b6
78
78
  - name: skill-craft
79
79
  path: meta/skill-craft
80
- version: 0.1.3
81
- sha256: ba6d0c4277e524fd93f5a11c0337e676aee88a9812e9bac3568922f2ad6f0ed1
80
+ version: 0.3.0
81
+ sha256: ba81e09412f26647a9384b07359201efb08949865c50934778a4ab3173d43096
82
82
  # ── planning ──
83
83
  - name: architecture
84
84
  path: planning/architecture
85
- version: 0.2.2
86
- sha256: 0504f3d4d1d06e4c8947a9366936557391552c5c663106f1c9a41555566cc15c
85
+ version: 0.3.0
86
+ sha256: 0da15631b3a60946e90b63047047e0ee1d84b6705e4f9f5405036b87fc849454
87
87
  - name: backlog
88
88
  path: planning/backlog
89
- version: 0.2.1
90
- sha256: 5f2b24f2b75af91c4bffceec63334ae07e2048bf908dc7bdbf752f154d297754
89
+ version: 0.3.0
90
+ sha256: af92244d2ba8723b656ce00d531df88850c7886915653751e7ba59957b5454be
91
91
  - name: prd
92
92
  path: planning/prd
93
- version: 0.2.2
94
- sha256: 09b3e6c53a87009a8f49760f117948c454ba3e6d4fb59422cbf52cba95277f8c
93
+ version: 0.3.0
94
+ sha256: 505460dcac23b762a87fd0f7f3aaa99806e3b0fbedeaa54f9c48608c49c16356
95
95
  - name: product-intent
96
96
  path: planning/product-intent
97
- version: 0.2.1
98
- sha256: 7c5d87706f4fdec7a27dacd2ba708b1eb957e7bd2b7d21f6f167b4a717616482
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+ version: 0.3.0
98
+ sha256: d34300e6e2422fc1071e352f3e0f1b13a4e65dbcfd4eaf6dd9ef2b61f18d72ad
99
99
  - name: tech-spec
100
100
  path: planning/tech-spec
101
- version: 0.1.2
102
- sha256: a938cfc14e1bf2d9d085fc7a37844011396bad97ab8573fb6e8b43e189f16580
101
+ version: 0.2.0
102
+ sha256: 28b1b0a0a3e9b48b29f679ab2377ee66d719c9a670eed622a38ac69be8b72b2e
103
103
  # ── research ──
104
104
  - name: arxiv-literature
105
105
  path: research/arxiv-literature
106
- version: 0.3.1
107
- sha256: 6a33c297e472f57b6094a3a2f494c43473feb338ed9fbda90bb17cee4f5fcb68
106
+ version: 0.4.0
107
+ sha256: b0b1bb80dc8d15e52ab180ab4f5645859310b45d7ebdf87649e0e5a7f7bca987
108
108
  - name: experiment-protocol
109
109
  path: research/experiment-protocol
110
- version: 0.1.3
111
- sha256: 97f632c86717f636f20527eac0a25d85fd8480743a2df54031f3c7440796b355
110
+ version: 0.2.0
111
+ sha256: 126e0f6dc3534a141978f2ccd1c6ea659df447beb1015bc92e41856d318584a2
112
112
  - name: scientific-debugging
113
113
  path: research/scientific-debugging
114
- version: 0.1.3
115
- sha256: 2bab38911f391947f04d94130f0b02c5398efcd75bf54fa2959cfc669ffc7898
114
+ version: 0.2.0
115
+ sha256: f2b2b6442740ef23270fad94f75ba95ce522da1877a468ba112cbaff68e5fa2a
116
116
  - name: scientific-modernization
117
117
  path: research/scientific-modernization
118
- version: 0.2.1
119
- sha256: adba60897e152c44cb5904b7511d99a61f1899e989e229ff28c5d7bc3caec5fe
118
+ version: 0.3.0
119
+ sha256: 66a99f38b38232735bb70d7924a85d0ab5addabfe3935cc82c0aaa3303d68773
120
120
  # ── workflow ──
121
121
  - name: cut-it
122
122
  path: workflow/cut-it
123
- version: 0.2.3
124
- sha256: d76dc38929d099dba82cef9d77a880b970aeebeaceccd1dd6541ed52d0134852
123
+ version: 0.3.0
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+ sha256: 6429a4725acf874379c1df7736dd95db07acd97ad5bd6f6226649370cd03d177
125
125
  - name: design-council
126
126
  path: workflow/design-council
127
- version: 0.3.2
128
- sha256: 623b9293554147b6335265b781dcdbdcdff55b680ed5f3a0e3840bcaf5bc0773
127
+ version: 0.4.0
128
+ sha256: 1ecd53397ce97ec78294cc9e8c7291b20e2e7d740bcde8ea999739d359c91055
129
129
  - name: grill-me
130
130
  path: workflow/grill-me
131
- version: 0.3.3
132
- sha256: 59b1d0a8ab0397c4231d32efc7cf66462d0ddfb57bd7417c904321870e327176
131
+ version: 0.4.0
132
+ sha256: 9cc07b89a4a8a3ecd4fb73d2cd9f7893d272d26f592ea3eb9883ff44069a2cea
133
133
  - name: workflow-distiller
134
134
  path: workflow/workflow-distiller
135
- version: 0.2.2
136
- sha256: 8c765474c34fd4fce1cfb73619cfa289a7850651577d2452228937f1a65ff132
135
+ version: 0.3.0
136
+ sha256: 6aa6bb3088f0e4925946aaba3f217dfc5a6e4b8e31f2f051abeda599da91cd48
package/skills/research/arxiv-literature/SKILL.md CHANGED
@@ -1,13 +1,13 @@
1
1
  ---
2
2
  name: arxiv-literature
3
- description: Use when the user asks to search arXiv, summarize an arXiv paper, compare papers, find recent research, or build a compact literature survey. Prefer the Researcher shadow agent for noisy multi-paper retrieval; return only citation-ready, source-linked paper cards.
3
+ description: Searches arXiv, summarizes or compares papers, and builds a compact literature survey as citation-ready, source-linked paper cards. Prefer the Researcher shadow agent for noisy multi-paper retrieval.
4
4
  triggers:
5
5
  - search arXiv
6
6
  - summarize an arXiv paper
7
7
  - compare these papers
8
8
  - find recent research papers
9
9
  - build a literature survey
10
- version: 0.3.1
10
+ version: 0.4.0
11
11
  license: Apache-2.0
12
12
  allowed-tools:
13
13
  - web_fetch
package/skills/research/experiment-protocol/SKILL.md CHANGED
@@ -1,6 +1,6 @@
1
1
  ---
2
2
  name: experiment-protocol
3
- description: Use when running a performance study, numerical comparison, parameter sweep, kernel or solver benchmark, or any change justified by "faster" or "more accurate", and success criteria should be locked before results exist. Pre-registers thresholds, tolerances, environment pins, and verdict conditions into the repository validation contract before any measurement. Triggers on "benchmark", "compare implementations", "optimize", "tolerance", "reproduce results", "parameter sweep". Not for diagnosing a stalled bug; use scientific-debugging.
3
+ description: "Pre-registers a performance study, numerical comparison, parameter sweep, or benchmark: thresholds, tolerances, environment pins, and verdict conditions locked into the validation contract before any measurement. Not for diagnosing a stalled bug; use scientific-debugging."
4
4
  triggers:
5
5
  - benchmark these implementations
6
6
  - pre-register a performance experiment
@@ -8,7 +8,7 @@ triggers:
8
8
  - define numerical tolerances
9
9
  - reproduce these results
10
10
  - compare solver accuracy
11
- version: 0.1.3
11
+ version: 0.2.0
12
12
  license: Apache-2.0
13
13
  allowed-tools:
14
14
  - read
package/skills/research/scientific-debugging/SKILL.md CHANGED
@@ -1,6 +1,6 @@
1
1
  ---
2
2
  name: scientific-debugging
3
- description: Use when debugging has stalled after the first obvious fix, when a failure spans multiple systems, when someone is about to try random changes, or when a scientific or HPC code produces wrong numbers, NaNs, nondeterministic results, or an unexplained performance regression. Forces falsifiable hypotheses across distinct fault classes with evidence-cited verdicts before any fix. Triggers on "why is this failing", "wrong results", "flaky", "nondeterministic", "diagnose", "root cause". Not for designing benchmarks or pre-registered experiments; use experiment-protocol.
3
+ description: Diagnoses stalled or cross-system failures and wrong, NaN, nondeterministic, or unexpectedly slow scientific results through falsifiable hypotheses across distinct fault classes, with evidence-cited verdicts before any fix. Not for designing benchmarks or pre-registered experiments; use experiment-protocol.
4
4
  triggers:
5
5
  - wrong scientific results
6
6
  - nondeterministic HPC code
@@ -8,7 +8,7 @@ triggers:
8
8
  - diagnose NaNs
9
9
  - debug with falsifiable hypotheses
10
10
  - scientific root cause
11
- version: 0.1.3
11
+ version: 0.2.0
12
12
  license: Apache-2.0
13
13
  allowed-tools:
14
14
  - read
package/skills/research/scientific-modernization/SKILL.md CHANGED
@@ -1,6 +1,6 @@
1
1
  ---
2
2
  name: scientific-modernization
3
- description: Use when modernizing, porting, rewriting, packaging, accelerating, or replacing established scientific software, especially across languages, build systems, CPU/GPU backends, or maintained forks. Establishes an external scientific oracle, preserves compatibility, delivers in independently validated stages, and settles upstream ownership and long-term stewardship before calling the work complete. Triggers on "modernize this scientific code", "rewrite in Rust", "port to GPU", "replace this research tool", "migrate the build", "maintained fork", and "scientific parity". Not for an isolated benchmark; use experiment-protocol. Not for diagnosing wrong results; use scientific-debugging.
3
+ description: Modernizes, ports, rewrites, packages, or replaces established scientific software in independently validated stages against an external scientific oracle, settling compatibility and upstream stewardship before calling it complete. Not for an isolated benchmark; use experiment-protocol. Not for diagnosing wrong results; use scientific-debugging.
4
4
  triggers:
5
5
  - modernize this scientific code
6
6
  - rewrite this scientific software in Rust
@@ -8,7 +8,7 @@ triggers:
8
8
  - migrate the scientific build system
9
9
  - create a maintained fork
10
10
  - preserve scientific parity
11
- version: 0.2.1
11
+ version: 0.3.0
12
12
  license: Apache-2.0
13
13
  allowed-tools:
14
14
  - read