@iowarp/clio-coder 0.3.1 → 0.3.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (595) hide show
  1. package/CHANGELOG.md +90 -2
  2. package/CONTRIBUTING.md +23 -23
  3. package/README.md +284 -613
  4. package/dist/{acp-FPR54DGL.js → acp-BIYHVZIM.js} +43 -53
  5. package/dist/{agents-OGPIHPJH.js → agents-YT6SSRIT.js} +43 -26
  6. package/dist/assets/codewiki.json +1 -1
  7. package/dist/{auth-IC3K6NIZ.js → auth-5TWEIYDN.js} +20 -12
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  101. package/dist/cli/index.js +62 -54
  102. package/dist/clio-4LY5K2AC.js +25 -0
  103. package/dist/code-nav-7AX6FYE6.js +600 -0
  104. package/dist/codewiki/build-worker.js +66 -0
  105. package/dist/compile-cache-CVJMMODC.js +18 -0
  106. package/dist/{components-DMAOEKFB.js → components-KELWS457.js} +11 -6
  107. package/dist/{config-IRUQ7SE4.js → config-GTLUW2PR.js} +92 -55
  108. package/dist/configure-R6A64DHX.js +42 -0
  109. package/dist/context-5VKGUVJJ.js +866 -0
  110. package/dist/{context-3KWFLHJG.js → context-JFZEJ7W5.js} +15 -13
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  112. package/dist/{context-clear-7TSNPAAI.js → context-clear-6ZHBAZZT.js} +54 -28
  113. package/dist/{context-index-W4RLWOQH.js → context-index-BZ4UYMTC.js} +30 -24
  114. package/dist/dispatch-runner-VKBRCWQC.js +1997 -0
  115. package/dist/{docs-5AWSPS37.js → docs-2C2LTVT2.js} +23 -10
  116. package/dist/{doctor-UC5NAJYQ.js → doctor-KI767GSN.js} +27 -17
  117. package/dist/{eval-U6TJHRLX.js → eval-XSSNATB4.js} +29 -16
  118. package/dist/{evidence-YEGUW4L3.js → evidence-UA6AWDQQ.js} +46 -26
  119. package/dist/{evolve-TXARCTPG.js → evolve-QNTFGV6Z.js} +45 -25
  120. package/dist/{extensions-OZFJ3A3G.js → extensions-QVDOHDGJ.js} +16 -7
  121. package/dist/{fleet-6G3DHNYE.js → fleet-Q7UOMUSG.js} +163 -54
  122. package/dist/{fleet-preflight-DSNT37JK.js → fleet-preflight-DDN536IT.js} +7 -4
  123. package/dist/{init-KZ5QTF6M.js → init-WBB65ZHQ.js} +69 -32
  124. package/dist/{memory-73ESV5YC.js → memory-MD3O64RI.js} +48 -27
  125. package/dist/{models-A4PVNWJK.js → models-BZU34YWD.js} +39 -25
  126. package/dist/monitor-MEQA5C3I.js +661 -0
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  129. package/dist/{preload-6WVMHX3A.js → preload-P6DGH2PZ.js} +2 -2
  130. package/dist/{reset-BGW6OGMV.js → reset-L2FQEE3E.js} +16 -10
  131. package/dist/{run-YTPEYQOH.js → run-IV4Q6RLN.js} +101 -61
  132. package/dist/{share-YIFFV4NQ.js → share-S5BZQC5I.js} +15 -8
  133. package/dist/{skills-2V6RA3OQ.js → skills-LQEKRDTN.js} +34 -14
  134. package/dist/{skills-eval-S2TVJO4F.js → skills-eval-3DC4HEWS.js} +70 -34
  135. package/dist/steer-GGWFUJUD.js +77 -0
  136. package/dist/{targets-TYXLPB23.js → targets-C4SSGQOB.js} +43 -27
  137. package/dist/terminal-lease-IT5JW2NR.js +395 -0
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  140. package/dist/{uninstall-LLLT4F4W.js → uninstall-FZCQCDKC.js} +10 -5
  141. package/dist/{upgrade-33G2LMM5.js → upgrade-7TT7SQ3G.js} +45 -25
  142. package/dist/{usage-ZAFSXKKG.js → usage-GV4PKT3M.js} +62 -31
  143. package/dist/verify-G6V4D2G7.js +716 -0
  144. package/dist/web-fetch-2YHJ3KTG.js +638 -0
  145. package/dist/{wiki-generate-NUQCVOQ3.js → wiki-generate-DQF6Z66B.js} +74 -34
  146. package/dist/worker/entry.js +221 -36
  147. package/dist/workspace-G4ZWUIPR.js +22 -0
  148. package/docs/README.md +22 -17
  149. package/docs/acp.md +168 -16
  150. package/docs/alcf-provider.md +1 -1
  151. package/docs/architecture.md +136 -7
  152. package/docs/artifact-versions.md +1 -1
  153. package/docs/built-in-agents.md +1 -1
  154. package/docs/capacity-and-scheduling.md +1 -1
  155. package/docs/commands-and-modes.md +114 -71
  156. package/docs/config-knobs-audit.md +1 -3
  157. package/docs/configuration-and-targets.md +174 -46
  158. package/docs/context-engine.md +29 -6
  159. package/docs/development-pipeline.md +26 -1
  160. package/docs/dispatch-architecture-rationale.md +1 -1
  161. package/docs/documentation-coverage.md +2 -2
  162. package/docs/documentation-guide.md +1 -1
  163. package/docs/environment-variables.md +13 -5
  164. package/docs/eval-runner.md +1 -1
  165. package/docs/evals-internal.md +1 -1
  166. package/docs/evidence-and-memory.md +6 -2
  167. package/docs/evolution.md +2 -2
  168. package/docs/exit-codes-and-output.md +15 -9
  169. package/docs/extensions-and-sharing.md +9 -9
  170. package/docs/fleet-dispatch.md +7 -5
  171. package/docs/git-commit-provenance.md +120 -0
  172. package/docs/glossary.md +1 -1
  173. package/docs/installation-and-lifecycle.md +34 -27
  174. package/docs/middleware-and-components.md +1 -1
  175. package/docs/model-catalog.md +45 -14
  176. package/docs/observability.md +8 -5
  177. package/docs/performance-methodology.md +491 -0
  178. package/docs/pi-boundary.md +72 -0
  179. package/docs/proactive-memory.md +3 -3
  180. package/docs/prompt-envelope-and-tools.md +24 -3
  181. package/docs/provider-adapter-cookbook.md +57 -4
  182. package/docs/release-cut-checklist.md +129 -115
  183. package/docs/safety-model.md +9 -5
  184. package/docs/scientific-validation.md +3 -3
  185. package/docs/session-lifecycle.md +55 -12
  186. package/docs/skills-marketplace.md +12 -8
  187. package/docs/time-conventions.md +1 -1
  188. package/docs/tool-usage.md +3 -3
  189. package/docs/trace-store.md +1 -1
  190. package/docs/troubleshooting.md +10 -7
  191. package/docs/tui-design.md +47 -10
  192. package/docs/worker-dispatch-mechanics.md +1 -1
  193. package/package.json +19 -22
  194. package/skills/coding/ast-grep/SKILL.md +136 -0
  195. package/skills/coding/ast-grep/evals.md +56 -0
  196. package/skills/coding/ast-grep/references/rule_reference.md +297 -0
  197. package/skills/coding/coding-standards/SKILL.md +113 -0
  198. package/skills/coding/coding-standards/evals.md +34 -0
  199. package/skills/coding/prototype/SKILL.md +86 -0
  200. package/skills/coding/prototype/evals.md +42 -0
  201. package/skills/coding/prototype/references/LOGIC.md +67 -0
  202. package/skills/coding/prototype/references/UI.md +112 -0
  203. package/skills/coding/tdd/SKILL.md +101 -0
  204. package/skills/coding/tdd/evals.md +41 -0
  205. package/skills/coding/tdd/references/mocking.md +59 -0
  206. package/skills/coding/tdd/references/tests.md +77 -0
  207. package/skills/context/context-handoff/SKILL.md +126 -0
  208. package/skills/context/context-handoff/evals.md +57 -0
  209. package/skills/context/context-handoff/scripts/new-handoff.sh +26 -0
  210. package/skills/context/context-prime/SKILL.md +95 -0
  211. package/skills/context/context-prime/evals.md +54 -0
  212. package/skills/meta/clio-dev/SKILL.md +91 -0
  213. package/skills/meta/clio-dev/evals.md +45 -0
  214. package/skills/meta/clio-test/SKILL.md +130 -0
  215. package/skills/meta/clio-test/evals.md +43 -0
  216. package/skills/meta/clio-test/references/harness.md +97 -0
  217. package/skills/meta/clio-test/references/test-map.md +59 -0
  218. package/skills/meta/credentials/SKILL.md +125 -0
  219. package/skills/meta/credentials/evals.md +104 -0
  220. package/skills/meta/find-skills/SKILL.md +72 -0
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  222. package/skills/meta/herdr/SKILL.md +127 -0
  223. package/skills/meta/herdr/evals.md +38 -0
  224. package/skills/meta/skill-craft/SKILL.md +102 -0
  225. package/skills/meta/skill-craft/evals.md +41 -0
  226. package/skills/planning/architecture/SKILL.md +129 -0
  227. package/skills/planning/architecture/evals.md +36 -0
  228. package/skills/planning/backlog/SKILL.md +90 -0
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  230. package/skills/planning/prd/SKILL.md +82 -0
  231. package/skills/planning/prd/evals.md +49 -0
  232. package/skills/planning/product-intent/SKILL.md +112 -0
  233. package/skills/planning/product-intent/evals.md +36 -0
  234. package/skills/planning/tech-spec/SKILL.md +115 -0
  235. package/skills/planning/tech-spec/evals.md +47 -0
  236. package/skills/registry.yaml +136 -0
  237. package/skills/research/arxiv-literature/SKILL.md +104 -0
  238. package/skills/research/arxiv-literature/evals.md +58 -0
  239. package/skills/research/experiment-protocol/SKILL.md +122 -0
  240. package/skills/research/experiment-protocol/evals.md +91 -0
  241. package/skills/research/scientific-debugging/SKILL.md +119 -0
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  243. package/skills/research/scientific-modernization/SKILL.md +138 -0
  244. package/skills/research/scientific-modernization/evals.md +84 -0
  245. package/skills/workflow/design-council/SKILL.md +139 -0
  246. package/skills/workflow/design-council/evals.md +97 -0
  247. package/skills/workflow/grill-me/SKILL.md +186 -0
  248. package/skills/workflow/grill-me/evals.md +78 -0
  249. package/skills/workflow/workflow-distiller/SKILL.md +136 -0
  250. package/skills/workflow/workflow-distiller/evals.md +107 -0
  251. package/src/cli/acp.ts +31 -4
  252. package/src/cli/clio.ts +68 -6
  253. package/src/cli/config-inspect.ts +28 -22
  254. package/src/cli/configure.ts +47 -9
  255. package/src/cli/context-clear.ts +2 -2
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  260. package/src/cli/evidence.ts +4 -1
  261. package/src/cli/extensions.ts +10 -1
  262. package/src/cli/fleet.ts +47 -6
  263. package/src/cli/index.ts +55 -26
  264. package/src/cli/memory.ts +3 -1
  265. package/src/cli/models.ts +1 -1
  266. package/src/cli/modes/json-stream.ts +37 -1
  267. package/src/cli/modes/print.ts +24 -9
  268. package/src/cli/run.ts +2 -2
  269. package/src/cli/skills-eval.ts +23 -8
  270. package/src/cli/skills.ts +19 -4
  271. package/src/cli/targets.ts +4 -0
  272. package/src/cli/text-layout.ts +15 -5
  273. package/src/cli/trace.ts +62 -14
  274. package/src/cli/upgrade.ts +18 -2
  275. package/src/cli/usage.ts +10 -3
  276. package/src/cli/wiki-generate.ts +2 -1
  277. package/src/core/agent-environment.ts +7 -0
  278. package/src/core/bash-exec.ts +72 -1
  279. package/src/core/boot-trace.ts +9 -4
  280. package/src/core/bus-events.ts +20 -4
  281. package/src/core/commit-attribution.ts +157 -0
  282. package/src/core/compile-cache.ts +159 -0
  283. package/src/core/config.ts +131 -2
  284. package/src/core/defaults.ts +39 -5
  285. package/src/core/domain-loader.ts +12 -5
  286. package/src/core/git-commit-attribution.ts +362 -0
  287. package/src/core/incomplete-installation.ts +45 -0
  288. package/src/core/response-schema.ts +1 -1
  289. package/src/core/safe-exec.ts +13 -1
  290. package/src/core/settings-layers.ts +155 -21
  291. package/src/core/skill-activation.ts +1 -1
  292. package/src/core/startup-timer.ts +3 -3
  293. package/src/core/state-file-lock.ts +13 -1
  294. package/src/core/termination.ts +78 -5
  295. package/src/domains/config/classify.ts +15 -3
  296. package/src/domains/config/extension.ts +19 -13
  297. package/src/domains/config/index.ts +10 -0
  298. package/src/domains/config/keybindings.ts +42 -6
  299. package/src/domains/context/bootstrap-prompt.ts +1 -1
  300. package/src/domains/context/bootstrap.ts +111 -18
  301. package/src/domains/context/clear.ts +16 -11
  302. package/src/domains/context/clio-md.ts +111 -9
  303. package/src/domains/context/codewiki/artifact.ts +400 -0
  304. package/src/domains/context/codewiki/build-worker-protocol.ts +24 -0
  305. package/src/domains/context/codewiki/build-worker.ts +54 -0
  306. package/src/domains/context/codewiki/coordinator.ts +182 -0
  307. package/src/domains/context/codewiki/indexer.ts +59 -144
  308. package/src/domains/context/codewiki/paths.ts +67 -0
  309. package/src/domains/context/codewiki/schema.ts +80 -0
  310. package/src/domains/context/codewiki/tree-sitter.ts +1 -1
  311. package/src/domains/context/contract.ts +11 -5
  312. package/src/domains/context/extension.ts +94 -143
  313. package/src/domains/context/fingerprint.ts +3 -1
  314. package/src/domains/context/index.ts +12 -22
  315. package/src/domains/context/project-metadata.ts +19 -0
  316. package/src/domains/context/prompt-context.ts +9 -10
  317. package/src/domains/context/refresh.ts +29 -21
  318. package/src/domains/context/runtime.ts +17 -0
  319. package/src/domains/context/wiki/generate.ts +39 -34
  320. package/src/domains/context/wiki/plan.ts +1 -1
  321. package/src/domains/context/wiki/prompts.ts +21 -8
  322. package/src/domains/dispatch/code-step.ts +20 -1
  323. package/src/domains/dispatch/extension.ts +158 -21
  324. package/src/domains/dispatch/failure-classification.ts +6 -0
  325. package/src/domains/dispatch/fleet-commit-attribution.ts +56 -0
  326. package/src/domains/dispatch/orphan-recovery.ts +50 -8
  327. package/src/domains/dispatch/receipt-integrity.ts +5 -0
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  # Commands and Modes
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  > [!TIP]
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- > **Interactive Spec Available:** An interactive dashboard is located at [docs/html/commands_blueprint.html](html/commands_blueprint.html) (Version: 0.3.1).
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  Clio Coder is a terminal-first alpha harness. This page keeps the command
@@ -19,8 +19,9 @@ For process exit codes, stdout deliverable guarantees, and machine-readable JSON
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  | `clio-coder` | Launch the interactive terminal UI. |
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  | `clio-coder run "<task>" [flags]` | Run one headless main-agent turn. Use `--json` for JSONL events. |
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  | `clio-coder run "<task>" --agent <id> [flags]` | Dispatch one explicit fleet agent non-interactively and write a receipt. |
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- | `clio-coder acp` | Serve Clio as an ACP v1 agent over stdio for ACP frontends. |
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- | `clio-coder --version` | Print the installed version. |
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+ | `clio-coder acp [--cwd PATH] [--permission-timeout MS]` | Serve Clio as an ACP v1 agent over stdio for ACP frontends. |
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+ | `clio-coder --version` | Print the installed version. `clio-coder version` is the subcommand form. |
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+ | `clio-coder --help [--all]` | Print the command list. `--all` appends every command under `clio-coder dev`. |
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  | `clio-coder --api-key <key>` | Override the active target API key for one invocation. |
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  | `clio-coder --no-context-files` / `clio-coder -nc` | Skip `CLIO-CODER.md` project-context injection for one invocation. |
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  | `clio-coder dev components diff --from <a> --to <b> [--json]` | Compare component snapshots. |
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- | `clio-coder trace sql <SELECT query> [--db PATH]` | Run one read-only SELECT against the mirror. Only SELECT is accepted. |
64
+ | `clio-coder trace sql <SELECT query> [--db PATH]` | Run one read-only query against the mirror. Only a single `SELECT` or read-only `WITH` statement is accepted; anything else exits 2. |
62
65
  | `clio-coder trace ui [--db PATH] [--port N]` | Serve the localhost-only waterfall viewer. The viewer is not part of the published package. |
63
66
  | `clio-coder dev evolve manifest init\|validate\|summarize` | Create and check typed harness change manifests. |
64
- | `clio-coder extensions list\|discover\|install\|enable\|disable\|remove` | Manage installed extension packages and resource roots. |
67
+ | `clio-coder extensions list\|discover\|install\|enable\|disable\|remove` | Manage installed extension packages and resource roots. `clio-coder ext` is an accepted alias. |
65
68
  | `clio-coder skills list\|search\|inspect\|validate\|install\|update\|sync\|eval` | Manage discovered skills, Clio-native skills, and local marketplace installs. |
66
- | `clio-coder docs [topic] [--no-open]` | Serve bundled HTML docs on 127.0.0.1. |
69
+ | `clio-coder docs [topic] [--no-open]` | Serve the interactive HTML docs of a source checkout on 127.0.0.1; the npm package ships the Markdown guides only. |
70
+ | `clio-coder usage report [--repo <path>] [--days <n>] [--json]` | Cross-session usage facts and opportunities from the session and run ledgers. The window defaults to 30 days and the JSON schema is marked experimental. |
67
71
  | `clio-coder dev share export --out <path> [--project\|--user\|--both] [--context] [--prompts] [--skills] [--settings] [--extensions]` | Export project context, prompts, skills, settings fragments, and extension bundles. |
68
72
  | `clio-coder dev share import <path> [--dry-run] [--force] [--project\|--user] [--json]` | Import a share archive with conflict reporting. |
69
73
  | `clio-coder dev share inspect <path> [--json]` | Inspect a share archive without importing it. |
74
+ | `clio-coder export --out <path> ...` / `clio-coder import <path> ...` | Top-level aliases for `dev share export` and `dev share import`. Each `dev` command also resolves without the `dev` prefix. |
70
75
  | `clio-coder context` | Show project context status, preload class, codewiki freshness, and the codewiki digest when present. |
71
- | `clio-coder context init [--preview] [--heuristic] [--yes] [--json] [--adopt] [--propose\|--apply\|--rewrite] [--target <id> [--model <id>] [--thinking <level>]]` | Explore the repo and bootstrap or update project context: `CLIO-CODER.md`, `.clio-coder/codewiki.json`, and `.clio-coder/state.json`. |
76
+ | `clio-coder context init [--preview] [--heuristic] [--yes] [--json] [--adopt] [--global] [--propose\|--apply\|--rewrite] [--target <id> [--model <id>] [--thinking <level>]]` | Explore the repo and bootstrap or update project context: `CLIO-CODER.md`, `.clio-coder/codewiki.json`, and `.clio-coder/state.json`. |
72
77
  | `clio-coder context refresh [--wiki]` | Rebuild the codewiki and state without touching `CLIO-CODER.md`; with `--wiki`, update an existing Markdown wiki. |
73
- | `clio-coder context wiki [--update\|--status]` | Generate, update, or inspect the agent-authored Markdown wiki under `.clio-coder/wiki/`. |
78
+ | `clio-coder context wiki [--update] [--status] [--depth auto\|simple\|medium\|detailed] [--target <id>] [--model <id>] [--thinking off\|low\|medium\|high]` | Generate, update, or inspect the agent-authored Markdown wiki under `.clio-coder/wiki/`. |
74
79
  | `clio-coder context reset [--all] [--yes]` | Clear accumulated project context artifacts; `--all` also removes `CLIO-CODER.md`. `--yes` (or `-y`) answers every confirmation and is required when stdin is not a terminal. |
75
80
  | `clio-coder context index [--json]` | Build the structural codewiki index without model calls; writes `.clio-coder/codewiki.json` and `.clio-coder/state.json` and prints coverage plus a structural hash. |
76
81
 
@@ -131,37 +136,38 @@ clio-coder run \
131
136
 
132
137
  Slash commands are available inside the TUI. Type `/` at the start of the prompt to open the grouped command palette autocomplete.
133
138
 
134
- The registry table below lists the available interactive slash commands. On a bare `/`, commands are presented in groups (`Run`, `Inspect`, `Configure`, `Sessions`) with compact argument hints. Aliases are stem-gated: they are hidden by default and only surfaced when the typed stem matches the alias spelling. The "Usage" column details expected arguments, with brackets `[]` indicating optional arguments and angle brackets `<>` indicating required arguments.
139
+ The registry table below lists the available interactive slash commands. On a bare `/`, commands are presented in groups (`Run`, `Inspect`, `Configure`, `Sessions`) with compact argument hints. Each operation has one canonical spelling; autocomplete, help, and parsing all read the same registry. The "Usage" column details expected arguments, with brackets `[]` indicating optional arguments and angle brackets `<>` indicating required arguments.
135
140
 
136
- | Command | Aliases | Usage | Purpose |
137
- | --- | --- | --- | --- |
138
- | `/quit` | `/exit` | `/quit` | Exit Clio Coder |
139
- | `/help` | - | `/help [query]` | Open the interactive help center showing commands and keys |
140
- | `/skill` | `/skill:`, `/skills:` | `/skill [name] [task]` | Open the Skills Hub or invoke a skill |
141
- | `/prompts` | - | `/prompts` | List prompt templates |
142
- | `/extensions` | - | `/extensions` | List installed extensions |
143
- | `/interop` | - | `/interop` | Review other coding agents detected on this machine |
144
- | `/share` | - | `/share [runId] \| /share export <path> \| /share import [--dry-run] [--force] <path>` | Share a worker result with the main agent, or export and import Clio archives |
145
- | `/run` | - | `/run [--agent-profile <profile>] [--runtime <runtimeId>] [--target <id>] [--model <id>] [--thinking <level>] [--tool-profile <minimal-local\|science-local\|full-agent>] [--require <cap>] [--share] <agent> <task>` | Run a fleet agent |
146
- | `/delegate` | - | `/delegate [--share] <agent-id> <task>` | Run an ACP delegation agent |
147
- | `/agents` | - | `/agents` | List Clio agents and ACP delegation agents |
148
- | `/targets` | - | `/targets` | Open Settings → Targets: health, use, connect, probe, remove |
149
- | `/cost` | - | `/cost` | Show session token and cost totals |
150
- | `/context` | `/ctx`, `/compact` | `/context compact [instructions] \| /context init \| /context refresh \| /context reset` | Context hub: window overlay plus compact, init, refresh, and reset |
151
- | `/fleet` | - | `/fleet` | Open Settings → Fleet: defaults, profiles, agent bindings, nodes |
152
- | `/tasks` | - | `/tasks` | Show the session task board the agent tracks with the tasks tool |
153
- | `/memory` | - | `/memory seed` | Inspect task memory or seed it from the newest handoff |
154
- | `/view` | - | `/view [filter] \| /view verify <runId>` | Browse session artifacts and verify receipts |
155
- | `/thinking` | - | `/thinking [level]` | Set the chat thinking level, or open Settings Orchestrator |
156
- | `/output` | - | `/output [verbosity]` | Set transcript detail (minimal, default, verbose), or open Settings → Terminal |
157
- | `/model` | `/models` | `/model [pattern]` | Open model selector or set a model |
158
- | `/scoped-models` | - | `/scoped-models` | Open Settings Models: the Alt+J / Alt+K cycle set and favorites |
159
- | `/settings` | `/config` | `/settings [section]` | Open interactive settings |
160
- | `/resume` | - | `/resume` | Resume a past session |
161
- | `/new` | - | `/new` | Start a fresh session |
162
- | `/tree` | - | `/tree` | Open session tree navigator |
163
- | `/fork` | - | `/fork` | Fork from an assistant turn |
164
- | `/export` | - | `/export [path]` | Export the session transcript to Markdown |
141
+ | Command | Usage | Purpose |
142
+ | --- | --- | --- |
143
+ | `/quit` | `/quit` | Exit Clio Coder |
144
+ | `/help` | `/help [query]` | Open the interactive help center showing commands and keys |
145
+ | `/skill` | `/skill [name] [task]` | Open the Skills Hub or invoke a skill |
146
+ | `/prompts` | `/prompts` | List prompt templates |
147
+ | `/extensions` | `/extensions` | List installed extensions |
148
+ | `/interop` | `/interop` | Review other coding agents detected on this machine |
149
+ | `/share` | `/share [runId] \| /share export <path> \| /share import [--dry-run] [--force] <path>` | Share a worker result with the main agent, or export and import Clio archives |
150
+ | `/run` | `/run [--agent-profile <profile>] [--runtime <runtimeId>] [--target <id>] [--model <id>] [--thinking <level>] [--tool-profile <minimal-local\|science-local\|full-agent>] [--require <cap>] [--share] <agent> <task>` | Run a fleet agent |
151
+ | `/delegate` | `/delegate [--share] <agent-id> <task>` | Run an ACP delegation agent |
152
+ | `/agents` | `/agents` | List Clio agents and ACP delegation agents |
153
+ | `/targets` | `/targets` | Open Settings → Targets: health, use, connect, probe, remove |
154
+ | `/cost` | `/cost` | Show session token and cost totals |
155
+ | `/context` | `/context compact [instructions] \| /context init \| /context refresh \| /context reset` | Context hub: window overlay plus compact, init, refresh, and reset |
156
+ | `/fleet` | `/fleet` | Open Settings → Fleet: defaults, profiles, agent bindings, nodes |
157
+ | `/decisions` | `/decisions` | Show settled interview decisions and operator revisions |
158
+ | `/tasks` | `/tasks add <text> \| /tasks hand <id> \| /tasks done <id> \| /tasks drop <id>` | Show the session board or manage project operator tasks |
159
+ | `/memory` | `/memory seed` | Inspect task memory or seed it from the newest handoff |
160
+ | `/view` | `/view [filter] \| /view verify <runId>` | Browse session artifacts and verify receipts |
161
+ | `/thinking` | `/thinking [level]` | Set the chat thinking level, or open Settings → Orchestrator |
162
+ | `/output` | `/output [verbosity]` | Set transcript detail (minimal, default, verbose), or open Settings Terminal |
163
+ | `/model` | `/model [pattern]` | Open model selector or set a model |
164
+ | `/scoped-models` | `/scoped-models` | Open Settings Models: the Alt+J / Alt+K cycle set and favorites |
165
+ | `/settings` | `/settings [section]` | Open interactive settings |
166
+ | `/resume` | `/resume` | Resume a past session |
167
+ | `/new` | `/new` | Start a fresh session |
168
+ | `/tree` | `/tree` | Open session tree navigator |
169
+ | `/fork` | `/fork` | Fork from an assistant turn |
170
+ | `/export` | `/export [path]` | Export a self-contained HTML transcript by default; a `.md` path writes Markdown |
165
171
 
166
172
  `/context` with no arguments opens the context-window ledger overlay. The
167
173
  subcommands own the durable project-context noun: `compact` summarizes older
@@ -173,15 +179,18 @@ context artifacts (`.clio-coder/codewiki.json`, `.clio-coder/state.json`,
173
179
  deletes `CLIO-CODER.md`; cancellation makes no changes. Session reset stays `/new`;
174
180
  there is deliberately no `/context clear`. The spellings `/context-init`,
175
181
  `/context-clear`, and `/context-view` are gone and are not aliased to anything.
176
- `/compact` is an alias for `/context compact` and carries the same optional
177
- instructions, so `/compact drop the old turns` runs the compaction the operator
178
- asked for instead of reporting that the spelling does not exist. `/exit` and
179
- `/config` are aliases of `/quit` and `/settings` on the same grounds: the
180
- command exists and the spelling is the one other tools in this class use.
181
- `/clear` has no counterpart here, so it stays an error that names `/help`.
182
+ There are no slash-command aliases. `/context compact`, `/quit`, `/model`,
183
+ `/settings`, and `/skill <name>` are their only spellings. Retired or foreign
184
+ spellings stay errors that name `/help` instead of guessing which operation the
185
+ operator intended.
186
+
187
+ The `/resume` picker accepts Page Up and Page Down to move by its 12 visible rows. Arrow keys continue to move one session at a time, and typing continues to filter the list.
182
188
 
183
189
  Only active commands run. Typing anything command-shaped that the registry does
184
190
  not own checks the loaded prompt templates across native and foreign prompt roots.
191
+ Built-in command names are reserved across interactive and headless modes; a
192
+ template with the same basename is omitted from `/prompts` with a collision
193
+ diagnostic instead of shadowing a command on one surface and expanding on another.
185
194
  If a matching template is found in an untrusted project root, Clio prints that the
186
195
  prompt template comes from an untrusted project root and directs the operator to set
187
196
  `skills.trustProjectCompatRoots`, sending nothing to the model. If the token names
@@ -191,9 +200,9 @@ it is never sent to the model. That covers spellings removed outright, such as
191
200
  behavior where an unrecognized spelling reached the model as prose and was answered
192
201
  conversationally, which left the operator believing a command had run when nothing had.
193
202
 
194
- Command-shaped means one word of letters, digits, and hyphens after the slash, so
203
+ Command-shaped means one word of letters, digits, hyphens, or colons after the slash, so
195
204
  paths such as `/home/user/notes.md` still reach the model unchanged. One word
196
- followed by prose is treated as a command, because `/compact tidy up` and `/tmp is
205
+ followed by prose is treated as a command, because `/status please` and `/tmp is
197
206
  full` are indistinguishable. To send such a line as text, escape the slash:
198
207
  `\/tmp is full` reaches the model as `/tmp is full`. The escape claims a single
199
208
  backslash and only in front of a slash, so `\\server\share` is unchanged, and it
@@ -201,9 +210,11 @@ works on a real command too, so `\/help` is a question about `/help` rather than
201
210
  the help overlay.
202
211
 
203
212
  A rejected command stays in the input line. The error names the spelling and the
204
- text is still there to correct, rather than having to be retyped.
213
+ text is still there to correct, rather than having to be retyped. Retired spellings (such as `/status`, `/receipts`, `/context-init`, `/context-clear`, `/context-view`, and `/skill:<name>`) are not recognized and fail closed with `/<token> is not a command. Type /help for the list.`
214
+
215
+ The accepted spelling of every command is the table under [Interactive Slash Commands](#interactive-slash-commands); there is exactly one per operation, and nothing else is parsed as a command.
205
216
 
206
- Configuration lives in one place: the `/settings` overlay. `/targets`, `/fleet`, `/scoped-models`, bare `/thinking`, and bare `/output` are deep links that open it focused on the matching section; `/settings <section>` reaches every other section the same way. `/thinking <level>`, `/output <verbosity>`, and `/model <pattern>` stay as quick setters that apply without opening anything.
217
+ Configuration lives in one place: the `/settings` overlay. `/settings <section>` reaches every section directly. `/thinking <level>`, `/output <verbosity>`, and `/model <pattern>` stay as quick setters that apply without opening anything.
207
218
 
208
219
  Settings → Targets presents an operational console table (`HEALTH`, `ID`, `ROLES`, `RUNTIME`, `LATENCY`) with an in-place action/detail drawer for URL, default model, last probe error, and reachability. `Enter` opens actions for `Use` (switches active chat target and rebases model), `Connect` (runs the API-key or OAuth flow then probes), `Probe`, and `Remove` (with preflight analysis of affected routes/profiles). Probing runs live when the overlay opens or when explicitly requested. Target creation is initiated via `clio-coder targets add`.
209
220
 
@@ -254,11 +265,22 @@ than a header with nothing under it. The entries are bookkeeping: they cost noth
254
265
  in the context window and never become model context, so resuming a session full
255
266
  of side runs does not spend the window on them.
256
267
 
257
- The `/tasks` overlay shows the session task board the agent maintains through
258
- the `tasks` tool: every task with its status, the evidence note recorded when
259
- it was completed, and the reason recorded when it was blocked or dropped. The
260
- board persists in the session ledger as `taskLedger` entries, so it survives
261
- `/resume` and `/fork` and can be audited from the JSONL alone.
268
+ The `/tasks` overlay combines the live session board, terminal task history,
269
+ successful workspace artifacts, and the project-scoped operator task inbox.
270
+ The live board shows every task with its status, operator provenance, completion
271
+ evidence, or block/drop reason. It persists as full `taskLedger` snapshots, so
272
+ stable board history and `userTaskId` pickup links survive `/resume` and `/fork`
273
+ and can be audited from `current.jsonl`. Operator tasks persist separately in
274
+ `.clio-coder/user-tasks.json`; the overlay can add, hand, finish, or drop them.
275
+ The model-facing `tasks` tool's session-ledger and inbox bookkeeping is the
276
+ documented read-class exception described in [the safety model](safety-model.md):
277
+ calls remain audited as `read` and do not grant workspace mutation authority.
278
+
279
+ The `/decisions` overlay shows completed and cancelled `ask_user` interviews
280
+ from the active branch. It retains settled and superseded values from
281
+ `decisionLedger` snapshots, expands the source question and answer, and lets the
282
+ operator supersede a decision or enter a correction. A correction is submitted
283
+ to the model as an ordinary operator turn after the durable snapshot changes.
262
284
 
263
285
  The read-only `/memory` overlay keeps durable and session memory attributable
264
286
  in one place. It lists approved evidence-backed lessons, then the live task
@@ -303,18 +325,28 @@ setups send Alt directly. Stock macOS Terminal.app needs **Use Option as Meta
303
325
  key** enabled in Settings > Profiles > Keyboard for native Alt; otherwise use
304
326
  `Ctrl+G` then the Alt binding letter.
305
327
 
328
+ `Alt+B` and `Alt+D` are approved application-input boundary overrides of Pi's
329
+ editor word-back and word-delete chords. Clio routes those two bindings before
330
+ the editor sees them so the task and decision boards remain global shortcuts.
331
+ They are intentional exceptions to the other app bindings' avoidance of Pi
332
+ editor reserves and can be rebound through `settings.yaml.keybindings`.
333
+
306
334
  | Binding | Action |
307
335
  | --- | --- |
308
- | `Enter` | Send draft prompt (when idle) or steer active assistant run (when streaming). |
336
+ | `Enter` | Send draft prompt (when idle) or deliver it at the next slot of the active run (when streaming). |
309
337
  | `Shift+Enter` / `Ctrl+J` | Insert a newline into multiline editor input. |
310
- | `Alt+Enter` | Queue the current draft as a follow-up message delivered after the active run finishes. |
311
- | `Alt+Up` | Restore queued steering and follow-up messages to the editor. |
338
+ | `Ctrl+P` / `Ctrl+N` | Browse backward / forward through prompts accepted in this interactive process; returning past the newest entry restores the unfinished draft. |
339
+ | `Alt+Enter` | End of turn: queue the current draft for delivery when the active run settles. |
340
+ | `Alt+I` | Interrupt: cancel the active run and deliver the current draft now. Refused while an attached dispatch runs or a permission ask is parked; the draft then queues for the next slot. |
341
+ | `Alt+Up` | Restore queued next-slot and end-of-turn messages to the editor. |
312
342
  | `Shift+Tab` | Cycle orchestrator thinking level (`off`, `minimal`, `low`, `medium`, `high`, `xhigh`, `max`). |
313
343
  | `Alt+T` | Open the session tree navigator (`/tree`). |
314
344
  | `Alt+U` | Toggle the footer dashboard between compact (quiet 2-zone) and expanded (4-zone urgency) layouts. |
315
345
  | `Alt+L` | Open the model and targets selector. |
316
346
  | `Alt+J` / `Alt+K` | Cycle forward / backward through the scoped model set (when empty, displays a notice directing the operator to `/scoped-models`). |
317
347
  | `Alt+W` | Toggle the Fleet Runs board (task, run ID, live telemetry, retry, and terminal history). |
348
+ | `Alt+B` | Open the composite session and operator task board (`/tasks`). Approved application-boundary override of editor word-back. |
349
+ | `Alt+D` | Open the settled interview decision board (`/decisions`). Approved application-boundary override of editor word-delete. |
318
350
  | `Alt+S` / `Ctrl+Alt+B` | Convert an active attached dispatch to a detached background batch. |
319
351
  | `Alt+O` | Toggle the newest tool call or worker block between collapsed subline and full body. |
320
352
  | `Ctrl+Alt+O` / `Alt+Shift+O` | Toggle all tool calls and worker blocks between collapsed sublines and full bodies. |
@@ -325,17 +357,29 @@ key** enabled in Settings > Profiles > Keyboard for native Alt; otherwise use
325
357
  | `Alt+X` | Dismiss footer notifications. |
326
358
  | `Ctrl+G`, then a letter | Portable leader fallback for Alt-letter actions. |
327
359
  | `Ctrl+C` | With no overlay: cancel stream, clear input, or press twice to exit. With an overlay open: close/cancel that overlay only. |
328
- | `Ctrl+D` | Exit when the editor is empty; otherwise delete the next character (pi-compatible). It never exits from inside an overlay. |
360
+ | `Ctrl+D` | Exit when the editor is empty; otherwise delete the next character. It never exits from inside an overlay. |
361
+ | `PageUp` / `PageDown` | In `/resume` and list overlays: scroll the selection by one full page (12 rows). |
329
362
  | `Esc` | With an overlay open: clear non-empty filter first, move up drill-down level, then close/cancel. With no overlay: cancel stream/operation or collapse dashboard. |
330
363
 
331
364
  When scripting Clio inside tmux, prefer `tmux send-keys C-m` for submit/confirm keys instead of the literal `Enter` token; some tmux/terminal combinations do not deliver `Enter` reliably.
332
365
 
333
366
  ## Live Steering
334
367
 
335
- During an active assistant stream, pressing `Enter` sends the current editor
336
- text as steering for the active run instead of waiting for the turn to finish.
337
- The input is delivered through `agent.steer` before the next model turn.
338
- `Alt+Enter` keeps the after-run follow-up behavior.
368
+ While a run is active, the key that submits a message chooses when it lands.
369
+ There are three modes, chosen per message; the default is next slot.
370
+
371
+ | Mode | Key | Delivery |
372
+ | --- | --- | --- |
373
+ | Next slot | `Enter` | Between tool batches, mid-run, through `agent.steer`. The agent keeps going and reads the message before its next model call. |
374
+ | End of turn | `Alt+Enter` | When the whole run settles and Clio would hand control back, through `agent.followUp`. A turn is the whole run, not one model round. |
375
+ | Interrupt | `Alt+I` (or `Ctrl+G`, `i`) | Cancels the in-flight work the way `Esc` does (generation aborts; a running bash child gets SIGTERM, then SIGKILL), waits for the cancelled run to seal its tool results in ledger order, then submits the message as a fresh prompt. Anything already queued returns to the editor. |
376
+
377
+ Interrupt is refused in two states and the message is queued for the next slot
378
+ instead, with a notice saying why: while an attached dispatch is running (the
379
+ abort would kill the worker's run with no receipt; steer it with `@<agent>` or
380
+ cancel it with `Esc`) and while a permission ask is parked (it is already
381
+ waiting on you). A steer that arrives as the run ends is resubmitted as a fresh
382
+ prompt. Headless `--steer-channel` lines are always next-slot steers.
339
383
 
340
384
  For running dispatches, the editor also accepts:
341
385
 
@@ -407,19 +451,18 @@ after 9 or more manual read-only exploration calls in one turn.
407
451
  Agent recipes are the Markdown source files. The normalized agent spec is the
408
452
  catalog/runtime view: category, capability class, latency class, tags, mode, and
409
453
  tool set. This keeps Clio's product vocabulary stable while dispatch continues
410
- to execute through the existing Pi-backed worker path, the sanctioned Claude Code worker runtimes (`claude-sdk` and `claude-code`), or external ACP delegation agents.
454
+ to execute through the existing engine worker path, the sanctioned Claude Code worker runtimes (`claude-sdk` and `claude-code`), or external ACP delegation agents.
411
455
 
412
456
  ## Verification Lanes
413
457
 
414
458
  | Command | Purpose |
415
459
  | --- | --- |
416
- | `npm run ci` | Local and GitHub PR gate: typecheck, Biome check, skills pin check, build, and deterministic tests. |
460
+ | `npm run ci` | Local and GitHub PR gate: typecheck, lint, skills pin check, build, the deterministic test suite, and the trace-viewer suite. |
417
461
  | `npm run ci:release` | Maintainer release gate: `npm run ci`, then the `check-release` dist and packaging audit. |
418
462
  | `npm run test:live` | Local manual live-model smoke. Requires `CLIO_CODER_LIVE_SMOKE=1` and a configured real model target. Add `-- --delegation` for `opencode` and `copilot` ACP delegation checks. |
419
463
  | `npm run typecheck` | Strict TypeScript pass. |
420
- | `npm run lint` | Biome checks; warnings are reported in the release gate output. |
421
- | `npm run test` | Contract, smoke, and boundary tests. |
422
- | `npm run check:boundaries` | Boundary invariants only. |
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+ | `npm run lint` | Biome checks plus `scripts/check-hygiene.ts`, which runs the boundary invariants, the skills pin check, and the README and docs drift rules. |
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+ | `npm run test` | Contract and smoke tests through the sharded runner. |
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  | `npm run build` | Production bundle through `tsup`. |
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  | `npm run dev` | `tsup --watch`. |
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  | `npm run clean` | Remove `dist/`. |
@@ -560,11 +603,11 @@ Clio Coder features direct, interactive controls for model reasoning and thinkin
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  The Clio TUI has been enhanced to maximize readability, operational focus, and command discovery:
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- - **Adaptive Welcome Launchpad:** Before the first prompt, renders a compact launchpad with bold CAPS section tags (`WORKSPACE`, `ROUTE`, `NEXT`), honest readiness indicators, and context-sensitive next actions. Upon first prompt submission, it deliberately collapses into a single-line session header (`>C_ Clio Coder vX.Y.Z · EXPERIMENTAL · ctx ready · type a task`) so the conversation transcript owns the viewport.
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+ - **Adaptive Welcome Launchpad:** Before the first prompt, renders a compact launchpad with bold CAPS section tags (`WORKSPACE`, `ROUTE`, `NEXT`), honest readiness indicators, and context-sensitive next actions. Upon first prompt submission, it deliberately collapses into a single-line session header (`>C_ Clio Coder vX.Y.Z · <workspace · git branch> · <target·model · ready> · ctx ready · type a task`) so the conversation transcript owns the viewport.
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  - **Unmistakable Clio Composer:** The input editor features an explicit left section tag reflecting current prompt semantics (`MESSAGE` while idle, `FOLLOW-UP` while Clio runs, and orange `STEER` when Enter steers in-flight execution). Includes the dim placeholder `Ask Clio… / for commands` and lower-rail hint `Enter send · Shift+Enter newline` at wider widths.
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  - **Progressively Disclosed Footer:** The compact footer uses a quiet two-zone status layout that suppresses idle decoration (`tools none`, `◌ idle`, and default-output tags). Line 1 displays workspace location, git branch/dirty state, and active phase only when meaningful; Line 2 displays the context window gauge and best current/last-turn receipt. `Alt+U` toggles the expanded dashboard, which orders information by operational urgency (Activity, Context, Session, Workspace).
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  - **Footer Notification Degradation Ladder:** The footer notification badge reserves the severity head (`glyph count noun`) and `[Alt+X] dismiss` tail first, allocating remaining width to an ellipsized message body. Under narrow terminal constraints, it degrades cleanly down the ladder without clipping action keys.
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- - **Grouped Slash Command Palette:** Typing `/` opens an autocomplete command palette grouped by operational category (`Run`, `Inspect`, `Configure`, `Sessions`) with compact argument hints. Aliases are stem-gated and only surface when the typed stem matches the alias.
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+ - **Grouped Slash Command Palette:** Typing `/` opens an autocomplete command palette grouped by operational category (`Run`, `Inspect`, `Configure`, `Sessions`) with compact argument hints. Every suggestion is the command's one canonical spelling.
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  - **Voice-First Transcript & Receipts:** User (`› `) and assistant (`✦ `) prose are formatted with a two-cell hanging indent, ensuring wrapped continuation lines remain visually tied to their voice prefix. Tool ledgers maintain full terminal width. Completed turn receipts honor output verbosity (`minimal` none, `default` compact dim `turn · in N · out M`, `verbose` full receipt with call counts, cache reads/writes, reasoning provenance, and verification caveats).
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  - **Transactional Settings Center:** Open via `/settings` (or deep links `/targets`, `/fleet`, `/scoped-models`, `/thinking`, `/output`). Grouped into `CORE`, `ROUTING`, `RUNTIME`, and `EXPERIENCE` sections. Value edits are transactional: `Enter` opens value pickers/checklists and constructs immutable change plans offering `Apply this session`, `Apply and save globally`, or `Cancel`. Includes the Fleet entity workbench, Targets console table with in-place action drawer, scoped-model checklist, and narrow-terminal drill-down navigation below 72 columns.
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@@ -31,7 +31,7 @@ Every runtime-tunable value needs both halves; the pair is one knob, not two. Th
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  | `CLIO_CODER_MAX_TOOL_CALLS` | 50 | `src/engine/loop-guard.ts` → `src/engine/worker-runtime.ts` | Worker lifetime tool-call cap for a dispatched run. Different axis than the orchestrator budget despite the near-identical name. |
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  | `CLIO_CODER_MAX_RUNS` | 1000 | `src/domains/dispatch/state.ts` | Dispatch run-ledger retention cap. |
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  | `CLIO_CODER_MAX_CONTEXT_TOKENS` | unset | `src/domains/providers/runtime-resolution.ts` | Context-window override for local runtimes. Also set internally by `clio-coder run --max-context-tokens` (see §6). |
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- | `CLIO_CODER_KV_CACHE_MODE` | unset | `src/engine/apis/lmstudio-native.ts` | KV-cache quantization mode. Also set internally by `clio-coder run --kv-cache-mode`. |
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+ | `CLIO_CODER_KV_CACHE_MODE` | unset | retired | KV-cache quantization mode. Also set internally by the former `clio-coder run --kv-cache-mode` path. |
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  | `CLIO_CODER_SAMPLING_OVERRIDES` | unset | `src/engine/apis/sampling-overrides.ts` | JSON sampling-parameter override. Set internally by print-mode sampling flags. |
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  | `CLIO_CODER_READ_MAX_BYTES` | 51200 (50 KB) | `src/tools/read.ts` | Per-call byte cap for the read tool. |
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  | `CLIO_CODER_OBSERVATION_TURN_BUDGET_BYTES` | 196608 (192 KB) | `src/tools/observation.ts` | Shared per-turn byte pool across all observation tools. |
@@ -70,8 +70,6 @@ All default off; all enabled with `1`.
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  | `CLIO_CODER_TRACE_BOOT` | `src/core/boot-trace.ts` | Boot-phase timing trace. |
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  | `CLIO_CODER_TIMING` | `src/entry/orchestrator.ts` | Startup timing report to stdout. |
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  | `CLIO_CODER_DEBUG_SHUTDOWN` | `src/core/domain-loader.ts`, `src/core/termination.ts` | Shutdown-path diagnostics. |
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- | `CLIO_CODER_DEBUG_LMSTUDIO` | `src/domains/providers/runtimes/common/lmstudio-logger.ts` | LM Studio wire logging. |
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- | `CLIO_CODER_RUNTIME_VERBOSE` | `src/engine/apis/lmstudio-native.ts` | Verbose runtime logging. |
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  | `CLIO_CODER_HOOK_BUDGET_DEBUG` | `src/domains/middleware/runtime.ts` | Per-overrun hook-budget diagnostics. |
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  ## 4. Internal plumbing (Pre-consolidated State)