@inkeep/open-knowledge 0.2.0 → 0.4.0-beta.6

package/dist/public/assets/chunk-XPW4576I-DSytTnq4.js

@@ -0,0 +1,32 @@
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package/dist/public/assets/chunk-ZZ45TVLE-JGFITgiO.js

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package/dist/public/assets/classDiagram-6PBFFD2Q-oopM_Z0m.js

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package/dist/public/assets/classDiagram-v2-HSJHXN6E-ZAL74u9S.js

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package/dist/public/assets/clone-C5y6xhRJ.js

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package/dist/public/assets/colors-XIJoz9Bd.js

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package/dist/public/assets/compiler-runtime-CVnuRdak.js

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a=e;a.vGraphObject!=null&&a.vGraphObject.update(a)}},f.prototype.initParameters=function(){this.isSubLayout||(this.layoutQuality=i.QUALITY,this.animationDuringLayout=i.DEFAULT_ANIMATION_DURING_LAYOUT,this.animationPeriod=i.DEFAULT_ANIMATION_PERIOD,this.animationOnLayout=i.DEFAULT_ANIMATION_ON_LAYOUT,this.incremental=i.DEFAULT_INCREMENTAL,this.createBendsAsNeeded=i.DEFAULT_CREATE_BENDS_AS_NEEDED,this.uniformLeafNodeSizes=i.DEFAULT_UNIFORM_LEAF_NODE_SIZES),this.animationDuringLayout&&(this.animationOnLayout=!1)},f.prototype.transform=function(e){if(e==null)this.transform(new l(0,0));else{var t=new u,n=this.graphManager.getRoot().updateLeftTop();if(n!=null){t.setWorldOrgX(e.x),t.setWorldOrgY(e.y),t.setDeviceOrgX(n.x),t.setDeviceOrgY(n.y);for(var r=this.getAllNodes(),i,a=0;a<r.length;a++)i=r[a],i.transform(t)}}},f.prototype.positionNodesRandomly=function(e){if(e==null)this.positionNodesRandomly(this.getGraphManager().getRoot()),this.getGraphManager().getRoot().updateBounds(!0);else for(var t,n,r=e.getNodes(),i=0;i<r.length;i++)t=r[i],n=t.getChild(),n==null||n.getNodes().length==0?t.scatter():(this.positionNodesRandomly(n),t.updateBounds())},f.prototype.getFlatForest=function(){for(var e=[],t=!0,n=this.graphManager.getRoot().getNodes(),i=!0,a=0;a<n.length;a++)n[a].getChild()!=null&&(i=!1);if(!i)return e;var o=new Set,s=[],c=new Map,l=[];for(l=l.concat(n);l.length>0&&t;){for(s.push(l[0]);s.length>0&&t;){var u=s[0];s.splice(0,1),o.add(u);for(var d=u.getEdges(),a=0;a<d.length;a++){var f=d[a].getOtherEnd(u);if(c.get(u)!=f)if(!o.has(f))s.push(f),c.set(f,u);else{t=!1;break}}}if(!t)e=[];else{var p=[].concat(r(o));e.push(p);for(var a=0;a<p.length;a++){var m=p[a],h=l.indexOf(m);h>-1&&l.splice(h,1)}o=new Set,c=new Map}}return e},f.prototype.createDummyNodesForBendpoints=function(e){for(var t=[],n=e.source,r=this.graphManager.calcLowestCommonAncestor(e.source,e.target),i=0;i<e.bendpoints.length;i++){var a=this.newNode(null);a.setRect(new Point(0,0),new Dimension(1,1)),r.add(a);var o=this.newEdge(null);this.graphManager.add(o,n,a),t.add(a),n=a}var o=this.newEdge(null);return this.graphManager.add(o,n,e.target),this.edgeToDummyNodes.set(e,t),e.isInterGraph()?this.graphManager.remove(e):r.remove(e),t},f.prototype.createBendpointsFromDummyNodes=function(){var e=[];e=e.concat(this.graphManager.getAllEdges()),e=[].concat(r(this.edgeToDummyNodes.keys()),e);for(var t=0;t<e.length;t++){var n=e[t];if(n.bendpoints.length>0){for(var i=this.edgeToDummyNodes.get(n),a=0;a<i.length;a++){var o=i[a],s=new l(o.getCenterX(),o.getCenterY()),c=n.bendpoints.get(a);c.x=s.x,c.y=s.y,o.getOwner().remove(o)}this.graphManager.add(n,n.source,n.target)}}},f.transform=function(e,t,n,r){if(n!=null&&r!=null){var i=t;if(e<=50){var a=t/n;i-=(t-a)/50*(50-e)}else{var o=t*r;i+=(o-t)/50*(e-50)}return i}else{var s,c;return e<=50?(s=9*t/500,c=t/10):(s=9*t/50,c=-8*t),s*e+c}},f.findCenterOfTree=function(e){var t=[];t=t.concat(e);var n=[],r=new Map,i=!1,a=null;(t.length==1||t.length==2)&&(i=!0,a=t[0]);for(var o=0;o<t.length;o++){var s=t[o],c=s.getNeighborsList().size;r.set(s,s.getNeighborsList().size),c==1&&n.push(s)}var l=[];for(l=l.concat(n);!i;){var u=[];u=u.concat(l),l=[];for(var o=0;o<t.length;o++){var s=t[o],d=t.indexOf(s);d>=0&&t.splice(d,1),s.getNeighborsList().forEach(function(e){if(n.indexOf(e)<0){var t=r.get(e)-1;t==1&&l.push(e),r.set(e,t)}})}n=n.concat(l),(t.length==1||t.length==2)&&(i=!0,a=t[0])}return a},f.prototype.setGraphManager=function(e){this.graphManager=e},e.exports=f}),(function(e,t,n){function r(){}r.seed=1,r.x=0,r.nextDouble=function(){return r.x=Math.sin(r.seed++)*1e4,r.x-Math.floor(r.x)},e.exports=r}),(function(e,t,n){var r=n(4);function i(e,t){this.lworldOrgX=0,this.lworldOrgY=0,this.ldeviceOrgX=0,this.ldeviceOrgY=0,this.lworldExtX=1,this.lworldExtY=1,this.ldeviceExtX=1,this.ldeviceExtY=1}i.prototype.getWorldOrgX=function(){return this.lworldOrgX},i.prototype.setWorldOrgX=function(e){this.lworldOrgX=e},i.prototype.getWorldOrgY=function(){return this.lworldOrgY},i.prototype.setWorldOrgY=function(e){this.lworldOrgY=e},i.prototype.getWorldExtX=function(){return this.lworldExtX},i.prototype.setWorldExtX=function(e){this.lworldExtX=e},i.prototype.getWorldExtY=function(){return this.lworldExtY},i.prototype.setWorldExtY=function(e){this.lworldExtY=e},i.prototype.getDeviceOrgX=function(){return this.ldeviceOrgX},i.prototype.setDeviceOrgX=function(e){this.ldeviceOrgX=e},i.prototype.getDeviceOrgY=function(){return this.ldeviceOrgY},i.prototype.setDeviceOrgY=function(e){this.ldeviceOrgY=e},i.prototype.getDeviceExtX=function(){return this.ldeviceExtX},i.prototype.setDeviceExtX=function(e){this.ldeviceExtX=e},i.prototype.getDeviceExtY=function(){return this.ldeviceExtY},i.prototype.setDeviceExtY=function(e){this.ldeviceExtY=e},i.prototype.transformX=function(e){var t=0,n=this.lworldExtX;return n!=0&&(t=this.ldeviceOrgX+(e-this.lworldOrgX)*this.ldeviceExtX/n),t},i.prototype.transformY=function(e){var t=0,n=this.lworldExtY;return n!=0&&(t=this.ldeviceOrgY+(e-this.lworldOrgY)*this.ldeviceExtY/n),t},i.prototype.inverseTransformX=function(e){var t=0,n=this.ldeviceExtX;return n!=0&&(t=this.lworldOrgX+(e-this.ldeviceOrgX)*this.lworldExtX/n),t},i.prototype.inverseTransformY=function(e){var t=0,n=this.ldeviceExtY;return n!=0&&(t=this.lworldOrgY+(e-this.ldeviceOrgY)*this.lworldExtY/n),t},i.prototype.inverseTransformPoint=function(e){return new r(this.inverseTransformX(e.x),this.inverseTransformY(e.y))},e.exports=i}),(function(e,t,n){function r(e){if(Array.isArray(e)){for(var t=0,n=Array(e.length);t<e.length;t++)n[t]=e[t];return n}else return Array.from(e)}var i=n(15),a=n(7),o=n(0),s=n(8),c=n(9);function l(){i.call(this),this.useSmartIdealEdgeLengthCalculation=a.DEFAULT_USE_SMART_IDEAL_EDGE_LENGTH_CALCULATION,this.idealEdgeLength=a.DEFAULT_EDGE_LENGTH,this.springConstant=a.DEFAULT_SPRING_STRENGTH,this.repulsionConstant=a.DEFAULT_REPULSION_STRENGTH,this.gravityConstant=a.DEFAULT_GRAVITY_STRENGTH,this.compoundGravityConstant=a.DEFAULT_COMPOUND_GRAVITY_STRENGTH,this.gravityRangeFactor=a.DEFAULT_GRAVITY_RANGE_FACTOR,this.compoundGravityRangeFactor=a.DEFAULT_COMPOUND_GRAVITY_RANGE_FACTOR,this.displacementThresholdPerNode=3*a.DEFAULT_EDGE_LENGTH/100,this.coolingFactor=a.DEFAULT_COOLING_FACTOR_INCREMENTAL,this.initialCoolingFactor=a.DEFAULT_COOLING_FACTOR_INCREMENTAL,this.totalDisplacement=0,this.oldTotalDisplacement=0,this.maxIterations=a.MAX_ITERATIONS}for(var u in l.prototype=Object.create(i.prototype),i)l[u]=i[u];l.prototype.initParameters=function(){i.prototype.initParameters.call(this,arguments),this.totalIterations=0,this.notAnimatedIterations=0,this.useFRGridVariant=a.DEFAULT_USE_SMART_REPULSION_RANGE_CALCULATION,this.grid=[]},l.prototype.calcIdealEdgeLengths=function(){for(var e,t,n,r,i,s,c=this.getGraphManager().getAllEdges(),l=0;l<c.length;l++)e=c[l],e.idealLength=this.idealEdgeLength,e.isInterGraph&&(n=e.getSource(),r=e.getTarget(),i=e.getSourceInLca().getEstimatedSize(),s=e.getTargetInLca().getEstimatedSize(),this.useSmartIdealEdgeLengthCalculation&&(e.idealLength+=i+s-2*o.SIMPLE_NODE_SIZE),t=e.getLca().getInclusionTreeDepth(),e.idealLength+=a.DEFAULT_EDGE_LENGTH*a.PER_LEVEL_IDEAL_EDGE_LENGTH_FACTOR*(n.getInclusionTreeDepth()+r.getInclusionTreeDepth()-2*t))},l.prototype.initSpringEmbedder=function(){var e=this.getAllNodes().length;this.incremental?(e>a.ADAPTATION_LOWER_NODE_LIMIT&&(this.coolingFactor=Math.max(this.coolingFactor*a.COOLING_ADAPTATION_FACTOR,this.coolingFactor-(e-a.ADAPTATION_LOWER_NODE_LIMIT)/(a.ADAPTATION_UPPER_NODE_LIMIT-a.ADAPTATION_LOWER_NODE_LIMIT)*this.coolingFactor*(1-a.COOLING_ADAPTATION_FACTOR))),this.maxNodeDisplacement=a.MAX_NODE_DISPLACEMENT_INCREMENTAL):(e>a.ADAPTATION_LOWER_NODE_LIMIT?this.coolingFactor=Math.max(a.COOLING_ADAPTATION_FACTOR,1-(e-a.ADAPTATION_LOWER_NODE_LIMIT)/(a.ADAPTATION_UPPER_NODE_LIMIT-a.ADAPTATION_LOWER_NODE_LIMIT)*(1-a.COOLING_ADAPTATION_FACTOR)):this.coolingFactor=1,this.initialCoolingFactor=this.coolingFactor,this.maxNodeDisplacement=a.MAX_NODE_DISPLACEMENT),this.maxIterations=Math.max(this.getAllNodes().length*5,this.maxIterations),this.totalDisplacementThreshold=this.displacementThresholdPerNode*this.getAllNodes().length,this.repulsionRange=this.calcRepulsionRange()},l.prototype.calcSpringForces=function(){for(var e=this.getAllEdges(),t,n=0;n<e.length;n++)t=e[n],this.calcSpringForce(t,t.idealLength)},l.prototype.calcRepulsionForces=function(){var e=arguments.length>0&&arguments[0]!==void 0?arguments[0]:!0,t=arguments.length>1&&arguments[1]!==void 0?arguments[1]:!1,n,r,i,o,s=this.getAllNodes(),c;if(this.useFRGridVariant)for(this.totalIterations%a.GRID_CALCULATION_CHECK_PERIOD==1&&e&&this.updateGrid(),c=new Set,n=0;n<s.length;n++)i=s[n],this.calculateRepulsionForceOfANode(i,c,e,t),c.add(i);else for(n=0;n<s.length;n++)for(i=s[n],r=n+1;r<s.length;r++)o=s[r],i.getOwner()==o.getOwner()&&this.calcRepulsionForce(i,o)},l.prototype.calcGravitationalForces=function(){for(var e,t=this.getAllNodesToApplyGravitation(),n=0;n<t.length;n++)e=t[n],this.calcGravitationalForce(e)},l.prototype.moveNodes=function(){for(var e=this.getAllNodes(),t,n=0;n<e.length;n++)t=e[n],t.move()},l.prototype.calcSpringForce=function(e,t){var n=e.getSource(),r=e.getTarget(),i,a,o,s;if(this.uniformLeafNodeSizes&&n.getChild()==null&&r.getChild()==null)e.updateLengthSimple();else if(e.updateLength(),e.isOverlapingSourceAndTarget)return;i=e.getLength(),i!=0&&(a=this.springConstant*(i-t),o=a*(e.lengthX/i),s=a*(e.lengthY/i),n.springForceX+=o,n.springForceY+=s,r.springForceX-=o,r.springForceY-=s)},l.prototype.calcRepulsionForce=function(e,t){var n=e.getRect(),r=t.getRect(),i=[,,],o=[,,,,],l,u,d,f,p,m,h;if(n.intersects(r)){s.calcSeparationAmount(n,r,i,a.DEFAULT_EDGE_LENGTH/2),m=2*i[0],h=2*i[1];var g=e.noOfChildren*t.noOfChildren/(e.noOfChildren+t.noOfChildren);e.repulsionForceX-=g*m,e.repulsionForceY-=g*h,t.repulsionForceX+=g*m,t.repulsionForceY+=g*h}else this.uniformLeafNodeSizes&&e.getChild()==null&&t.getChild()==null?(l=r.getCenterX()-n.getCenterX(),u=r.getCenterY()-n.getCenterY()):(s.getIntersection(n,r,o),l=o[2]-o[0],u=o[3]-o[1]),Math.abs(l)<a.MIN_REPULSION_DIST&&(l=c.sign(l)*a.MIN_REPULSION_DIST),Math.abs(u)<a.MIN_REPULSION_DIST&&(u=c.sign(u)*a.MIN_REPULSION_DIST),d=l*l+u*u,f=Math.sqrt(d),p=this.repulsionConstant*e.noOfChildren*t.noOfChildren/d,m=p*l/f,h=p*u/f,e.repulsionForceX-=m,e.repulsionForceY-=h,t.repulsionForceX+=m,t.repulsionForceY+=h},l.prototype.calcGravitationalForce=function(e){var t=e.getOwner(),n=(t.getRight()+t.getLeft())/2,r=(t.getTop()+t.getBottom())/2,i=e.getCenterX()-n,a=e.getCenterY()-r,o=Math.abs(i)+e.getWidth()/2,s=Math.abs(a)+e.getHeight()/2,c;e.getOwner()==this.graphManager.getRoot()?(c=t.getEstimatedSize()*this.gravityRangeFactor,(o>c||s>c)&&(e.gravitationForceX=-this.gravityConstant*i,e.gravitationForceY=-this.gravityConstant*a)):(c=t.getEstimatedSize()*this.compoundGravityRangeFactor,(o>c||s>c)&&(e.gravitationForceX=-this.gravityConstant*i*this.compoundGravityConstant,e.gravitationForceY=-this.gravityConstant*a*this.compoundGravityConstant))},l.prototype.isConverged=function(){var e,t=!1;return this.totalIterations>this.maxIterations/3&&(t=Math.abs(this.totalDisplacement-this.oldTotalDisplacement)<2),e=this.totalDisplacement<this.totalDisplacementThreshold,this.oldTotalDisplacement=this.totalDisplacement,e||t},l.prototype.animate=function(){this.animationDuringLayout&&!this.isSubLayout&&(this.notAnimatedIterations==this.animationPeriod?(this.update(),this.notAnimatedIterations=0):this.notAnimatedIterations++)},l.prototype.calcNoOfChildrenForAllNodes=function(){for(var e,t=this.graphManager.getAllNodes(),n=0;n<t.length;n++)e=t[n],e.noOfChildren=e.getNoOfChildren()},l.prototype.calcGrid=function(e){var t=0,n=0;t=parseInt(Math.ceil((e.getRight()-e.getLeft())/this.repulsionRange)),n=parseInt(Math.ceil((e.getBottom()-e.getTop())/this.repulsionRange));for(var r=Array(t),i=0;i<t;i++)r[i]=Array(n);for(var i=0;i<t;i++)for(var a=0;a<n;a++)r[i][a]=[];return r},l.prototype.addNodeToGrid=function(e,t,n){var r=0,i=0,a=0,o=0;r=parseInt(Math.floor((e.getRect().x-t)/this.repulsionRange)),i=parseInt(Math.floor((e.getRect().width+e.getRect().x-t)/this.repulsionRange)),a=parseInt(Math.floor((e.getRect().y-n)/this.repulsionRange)),o=parseInt(Math.floor((e.getRect().height+e.getRect().y-n)/this.repulsionRange));for(var s=r;s<=i;s++)for(var c=a;c<=o;c++)this.grid[s][c].push(e),e.setGridCoordinates(r,i,a,o)},l.prototype.updateGrid=function(){var e,t,n=this.getAllNodes();for(this.grid=this.calcGrid(this.graphManager.getRoot()),e=0;e<n.length;e++)t=n[e],this.addNodeToGrid(t,this.graphManager.getRoot().getLeft(),this.graphManager.getRoot().getTop())},l.prototype.calculateRepulsionForceOfANode=function(e,t,n,i){if(this.totalIterations%a.GRID_CALCULATION_CHECK_PERIOD==1&&n||i){var o=new Set;e.surrounding=[];for(var s,c=this.grid,l=e.startX-1;l<e.finishX+2;l++)for(var u=e.startY-1;u<e.finishY+2;u++)if(!(l<0||u<0||l>=c.length||u>=c[0].length)){for(var d=0;d<c[l][u].length;d++)if(s=c[l][u][d],!(e.getOwner()!=s.getOwner()||e==s)&&!t.has(s)&&!o.has(s)){var f=Math.abs(e.getCenterX()-s.getCenterX())-(e.getWidth()/2+s.getWidth()/2),p=Math.abs(e.getCenterY()-s.getCenterY())-(e.getHeight()/2+s.getHeight()/2);f<=this.repulsionRange&&p<=this.repulsionRange&&o.add(s)}}e.surrounding=[].concat(r(o))}for(l=0;l<e.surrounding.length;l++)this.calcRepulsionForce(e,e.surrounding[l])},l.prototype.calcRepulsionRange=function(){return 0},e.exports=l}),(function(e,t,n){var r=n(1),i=n(7);function a(e,t,n){r.call(this,e,t,n),this.idealLength=i.DEFAULT_EDGE_LENGTH}for(var o in a.prototype=Object.create(r.prototype),r)a[o]=r[o];e.exports=a}),(function(e,t,n){var r=n(3);function i(e,t,n,i){r.call(this,e,t,n,i),this.springForceX=0,this.springForceY=0,this.repulsionForceX=0,this.repulsionForceY=0,this.gravitationForceX=0,this.gravitationForceY=0,this.displacementX=0,this.displacementY=0,this.startX=0,this.finishX=0,this.startY=0,this.finishY=0,this.surrounding=[]}for(var a in i.prototype=Object.create(r.prototype),r)i[a]=r[a];i.prototype.setGridCoordinates=function(e,t,n,r){this.startX=e,this.finishX=t,this.startY=n,this.finishY=r},e.exports=i}),(function(e,t,n){function r(e,t){this.width=0,this.height=0,e!==null&&t!==null&&(this.height=t,this.width=e)}r.prototype.getWidth=function(){return this.width},r.prototype.setWidth=function(e){this.width=e},r.prototype.getHeight=function(){return this.height},r.prototype.setHeight=function(e){this.height=e},e.exports=r}),(function(e,t,n){var r=n(14);function i(){this.map={},this.keys=[]}i.prototype.put=function(e,t){var n=r.createID(e);this.contains(n)||(this.map[n]=t,this.keys.push(e))},i.prototype.contains=function(e){return r.createID(e),this.map[e]!=null},i.prototype.get=function(e){var t=r.createID(e);return this.map[t]},i.prototype.keySet=function(){return this.keys},e.exports=i}),(function(e,t,n){var r=n(14);function i(){this.set={}}i.prototype.add=function(e){var t=r.createID(e);this.contains(t)||(this.set[t]=e)},i.prototype.remove=function(e){delete this.set[r.createID(e)]},i.prototype.clear=function(){this.set={}},i.prototype.contains=function(e){return this.set[r.createID(e)]==e},i.prototype.isEmpty=function(){return this.size()===0},i.prototype.size=function(){return Object.keys(this.set).length},i.prototype.addAllTo=function(e){for(var t=Object.keys(this.set),n=t.length,r=0;r<n;r++)e.push(this.set[t[r]])},i.prototype.size=function(){return Object.keys(this.set).length},i.prototype.addAll=function(e){for(var t=e.length,n=0;n<t;n++){var r=e[n];this.add(r)}},e.exports=i}),(function(e,t,n){var r=function(){function e(e,t){for(var n=0;n<t.length;n++){var r=t[n];r.enumerable=r.enumerable||!1,r.configurable=!0,`value`in r&&(r.writable=!0),Object.defineProperty(e,r.key,r)}}return function(t,n,r){return n&&e(t.prototype,n),r&&e(t,r),t}}();function i(e,t){if(!(e instanceof t))throw TypeError(`Cannot call a class as a function`)}var a=n(11);e.exports=function(){function e(t,n){i(this,e),(n!==null||n!==void 0)&&(this.compareFunction=this._defaultCompareFunction);var r=void 0;r=t instanceof a?t.size():t.length,this._quicksort(t,0,r-1)}return r(e,[{key:`_quicksort`,value:function(e,t,n){if(t<n){var r=this._partition(e,t,n);this._quicksort(e,t,r),this._quicksort(e,r+1,n)}}},{key:`_partition`,value:function(e,t,n){for(var r=this._get(e,t),i=t,a=n;;){for(;this.compareFunction(r,this._get(e,a));)a--;for(;this.compareFunction(this._get(e,i),r);)i++;if(i<a)this._swap(e,i,a),i++,a--;else return a}}},{key:`_get`,value:function(e,t){return e instanceof a?e.get_object_at(t):e[t]}},{key:`_set`,value:function(e,t,n){e instanceof a?e.set_object_at(t,n):e[t]=n}},{key:`_swap`,value:function(e,t,n){var r=this._get(e,t);this._set(e,t,this._get(e,n)),this._set(e,n,r)}},{key:`_defaultCompareFunction`,value:function(e,t){return t>e}}]),e}()}),(function(e,t,n){var r=function(){function e(e,t){for(var n=0;n<t.length;n++){var r=t[n];r.enumerable=r.enumerable||!1,r.configurable=!0,`value`in r&&(r.writable=!0),Object.defineProperty(e,r.key,r)}}return function(t,n,r){return n&&e(t.prototype,n),r&&e(t,r),t}}();function i(e,t){if(!(e instanceof t))throw TypeError(`Cannot call a class as a function`)}e.exports=function(){function e(t,n){var r=arguments.length>2&&arguments[2]!==void 0?arguments[2]:1,a=arguments.length>3&&arguments[3]!==void 0?arguments[3]:-1,o=arguments.length>4&&arguments[4]!==void 0?arguments[4]:-1;i(this,e),this.sequence1=t,this.sequence2=n,this.match_score=r,this.mismatch_penalty=a,this.gap_penalty=o,this.iMax=t.length+1,this.jMax=n.length+1,this.grid=Array(this.iMax);for(var s=0;s<this.iMax;s++){this.grid[s]=Array(this.jMax);for(var c=0;c<this.jMax;c++)this.grid[s][c]=0}this.tracebackGrid=Array(this.iMax);for(var l=0;l<this.iMax;l++){this.tracebackGrid[l]=Array(this.jMax);for(var u=0;u<this.jMax;u++)this.tracebackGrid[l][u]=[null,null,null]}this.alignments=[],this.score=-1,this.computeGrids()}return r(e,[{key:`getScore`,value:function(){return this.score}},{key:`getAlignments`,value:function(){return this.alignments}},{key:`computeGrids`,value:function(){for(var e=1;e<this.jMax;e++)this.grid[0][e]=this.grid[0][e-1]+this.gap_penalty,this.tracebackGrid[0][e]=[!1,!1,!0];for(var t=1;t<this.iMax;t++)this.grid[t][0]=this.grid[t-1][0]+this.gap_penalty,this.tracebackGrid[t][0]=[!1,!0,!1];for(var n=1;n<this.iMax;n++)for(var r=1;r<this.jMax;r++){var i=void 0;i=this.sequence1[n-1]===this.sequence2[r-1]?this.grid[n-1][r-1]+this.match_score:this.grid[n-1][r-1]+this.mismatch_penalty;var a=this.grid[n-1][r]+this.gap_penalty,o=this.grid[n][r-1]+this.gap_penalty,s=[i,a,o],c=this.arrayAllMaxIndexes(s);this.grid[n][r]=s[c[0]],this.tracebackGrid[n][r]=[c.includes(0),c.includes(1),c.includes(2)]}this.score=this.grid[this.iMax-1][this.jMax-1]}},{key:`alignmentTraceback`,value:function(){var e=[];for(e.push({pos:[this.sequence1.length,this.sequence2.length],seq1:``,seq2:``});e[0];){var t=e[0],n=this.tracebackGrid[t.pos[0]][t.pos[1]];n[0]&&e.push({pos:[t.pos[0]-1,t.pos[1]-1],seq1:this.sequence1[t.pos[0]-1]+t.seq1,seq2:this.sequence2[t.pos[1]-1]+t.seq2}),n[1]&&e.push({pos:[t.pos[0]-1,t.pos[1]],seq1:this.sequence1[t.pos[0]-1]+t.seq1,seq2:`-`+t.seq2}),n[2]&&e.push({pos:[t.pos[0],t.pos[1]-1],seq1:`-`+t.seq1,seq2:this.sequence2[t.pos[1]-1]+t.seq2}),t.pos[0]===0&&t.pos[1]===0&&this.alignments.push({sequence1:t.seq1,sequence2:t.seq2}),e.shift()}return this.alignments}},{key:`getAllIndexes`,value:function(e,t){for(var n=[],r=-1;(r=e.indexOf(t,r+1))!==-1;)n.push(r);return n}},{key:`arrayAllMaxIndexes`,value:function(e){return this.getAllIndexes(e,Math.max.apply(null,e))}}]),e}()}),(function(e,t,n){var r=function(){};r.FDLayout=n(18),r.FDLayoutConstants=n(7),r.FDLayoutEdge=n(19),r.FDLayoutNode=n(20),r.DimensionD=n(21),r.HashMap=n(22),r.HashSet=n(23),r.IGeometry=n(8),r.IMath=n(9),r.Integer=n(10),r.Point=n(12),r.PointD=n(4),r.RandomSeed=n(16),r.RectangleD=n(13),r.Transform=n(17),r.UniqueIDGeneretor=n(14),r.Quicksort=n(24),r.LinkedList=n(11),r.LGraphObject=n(2),r.LGraph=n(5),r.LEdge=n(1),r.LGraphManager=n(6),r.LNode=n(3),r.Layout=n(15),r.LayoutConstants=n(0),r.NeedlemanWunsch=n(25),e.exports=r}),(function(e,t,n){function r(){this.listeners=[]}var i=r.prototype;i.addListener=function(e,t){this.listeners.push({event:e,callback:t})},i.removeListener=function(e,t){for(var n=this.listeners.length;n>=0;n--){var r=this.listeners[n];r.event===e&&r.callback===t&&this.listeners.splice(n,1)}},i.emit=function(e,t){for(var n=0;n<this.listeners.length;n++){var r=this.listeners[n];e===r.event&&r.callback(t)}},e.exports=r})])})})),s=t(((e,t)=>{(function(n,r){typeof e==`object`&&typeof t==`object`?t.exports=r(o()):typeof define==`function`&&define.amd?define([`layout-base`],r):typeof e==`object`?e.coseBase=r(o()):n.coseBase=r(n.layoutBase)})(e,function(e){return(function(e){var t={};function n(r){if(t[r])return t[r].exports;var i=t[r]={i:r,l:!1,exports:{}};return e[r].call(i.exports,i,i.exports,n),i.l=!0,i.exports}return n.m=e,n.c=t,n.i=function(e){return e},n.d=function(e,t,r){n.o(e,t)||Object.defineProperty(e,t,{configurable:!1,enumerable:!0,get:r})},n.n=function(e){var t=e&&e.__esModule?function(){return e.default}:function(){return e};return n.d(t,`a`,t),t},n.o=function(e,t){return Object.prototype.hasOwnProperty.call(e,t)},n.p=``,n(n.s=7)})([(function(t,n){t.exports=e}),(function(e,t,n){var r=n(0).FDLayoutConstants;function i(){}for(var a in r)i[a]=r[a];i.DEFAULT_USE_MULTI_LEVEL_SCALING=!1,i.DEFAULT_RADIAL_SEPARATION=r.DEFAULT_EDGE_LENGTH,i.DEFAULT_COMPONENT_SEPERATION=60,i.TILE=!0,i.TILING_PADDING_VERTICAL=10,i.TILING_PADDING_HORIZONTAL=10,i.TREE_REDUCTION_ON_INCREMENTAL=!1,e.exports=i}),(function(e,t,n){var r=n(0).FDLayoutEdge;function i(e,t,n){r.call(this,e,t,n)}for(var a in i.prototype=Object.create(r.prototype),r)i[a]=r[a];e.exports=i}),(function(e,t,n){var r=n(0).LGraph;function i(e,t,n){r.call(this,e,t,n)}for(var a in i.prototype=Object.create(r.prototype),r)i[a]=r[a];e.exports=i}),(function(e,t,n){var r=n(0).LGraphManager;function i(e){r.call(this,e)}for(var a in i.prototype=Object.create(r.prototype),r)i[a]=r[a];e.exports=i}),(function(e,t,n){var r=n(0).FDLayoutNode,i=n(0).IMath;function a(e,t,n,i){r.call(this,e,t,n,i)}for(var o in a.prototype=Object.create(r.prototype),r)a[o]=r[o];a.prototype.move=function(){var e=this.graphManager.getLayout();this.displacementX=e.coolingFactor*(this.springForceX+this.repulsionForceX+this.gravitationForceX)/this.noOfChildren,this.displacementY=e.coolingFactor*(this.springForceY+this.repulsionForceY+this.gravitationForceY)/this.noOfChildren,Math.abs(this.displacementX)>e.coolingFactor*e.maxNodeDisplacement&&(this.displacementX=e.coolingFactor*e.maxNodeDisplacement*i.sign(this.displacementX)),Math.abs(this.displacementY)>e.coolingFactor*e.maxNodeDisplacement&&(this.displacementY=e.coolingFactor*e.maxNodeDisplacement*i.sign(this.displacementY)),this.child==null||this.child.getNodes().length==0?this.moveBy(this.displacementX,this.displacementY):this.propogateDisplacementToChildren(this.displacementX,this.displacementY),e.totalDisplacement+=Math.abs(this.displacementX)+Math.abs(this.displacementY),this.springForceX=0,this.springForceY=0,this.repulsionForceX=0,this.repulsionForceY=0,this.gravitationForceX=0,this.gravitationForceY=0,this.displacementX=0,this.displacementY=0},a.prototype.propogateDisplacementToChildren=function(e,t){for(var n=this.getChild().getNodes(),r,i=0;i<n.length;i++)r=n[i],r.getChild()==null?(r.moveBy(e,t),r.displacementX+=e,r.displacementY+=t):r.propogateDisplacementToChildren(e,t)},a.prototype.setPred1=function(e){this.pred1=e},a.prototype.getPred1=function(){return pred1},a.prototype.getPred2=function(){return pred2},a.prototype.setNext=function(e){this.next=e},a.prototype.getNext=function(){return next},a.prototype.setProcessed=function(e){this.processed=e},a.prototype.isProcessed=function(){return processed},e.exports=a}),(function(e,t,n){var r=n(0).FDLayout,i=n(4),a=n(3),o=n(5),s=n(2),c=n(1),l=n(0).FDLayoutConstants,u=n(0).LayoutConstants,d=n(0).Point,f=n(0).PointD,p=n(0).Layout,m=n(0).Integer,h=n(0).IGeometry,g=n(0).LGraph,_=n(0).Transform;function v(){r.call(this),this.toBeTiled={}}for(var y in v.prototype=Object.create(r.prototype),r)v[y]=r[y];v.prototype.newGraphManager=function(){var e=new i(this);return this.graphManager=e,e},v.prototype.newGraph=function(e){return new a(null,this.graphManager,e)},v.prototype.newNode=function(e){return new o(this.graphManager,e)},v.prototype.newEdge=function(e){return new s(null,null,e)},v.prototype.initParameters=function(){r.prototype.initParameters.call(this,arguments),this.isSubLayout||(c.DEFAULT_EDGE_LENGTH<10?this.idealEdgeLength=10:this.idealEdgeLength=c.DEFAULT_EDGE_LENGTH,this.useSmartIdealEdgeLengthCalculation=c.DEFAULT_USE_SMART_IDEAL_EDGE_LENGTH_CALCULATION,this.springConstant=l.DEFAULT_SPRING_STRENGTH,this.repulsionConstant=l.DEFAULT_REPULSION_STRENGTH,this.gravityConstant=l.DEFAULT_GRAVITY_STRENGTH,this.compoundGravityConstant=l.DEFAULT_COMPOUND_GRAVITY_STRENGTH,this.gravityRangeFactor=l.DEFAULT_GRAVITY_RANGE_FACTOR,this.compoundGravityRangeFactor=l.DEFAULT_COMPOUND_GRAVITY_RANGE_FACTOR,this.prunedNodesAll=[],this.growTreeIterations=0,this.afterGrowthIterations=0,this.isTreeGrowing=!1,this.isGrowthFinished=!1,this.coolingCycle=0,this.maxCoolingCycle=this.maxIterations/l.CONVERGENCE_CHECK_PERIOD,this.finalTemperature=l.CONVERGENCE_CHECK_PERIOD/this.maxIterations,this.coolingAdjuster=1)},v.prototype.layout=function(){return u.DEFAULT_CREATE_BENDS_AS_NEEDED&&(this.createBendpoints(),this.graphManager.resetAllEdges()),this.level=0,this.classicLayout()},v.prototype.classicLayout=function(){if(this.nodesWithGravity=this.calculateNodesToApplyGravitationTo(),this.graphManager.setAllNodesToApplyGravitation(this.nodesWithGravity),this.calcNoOfChildrenForAllNodes(),this.graphManager.calcLowestCommonAncestors(),this.graphManager.calcInclusionTreeDepths(),this.graphManager.getRoot().calcEstimatedSize(),this.calcIdealEdgeLengths(),!this.incremental){var e=this.getFlatForest();if(e.length>0)this.positionNodesRadially(e);else{this.reduceTrees(),this.graphManager.resetAllNodesToApplyGravitation();var t=new Set(this.getAllNodes()),n=this.nodesWithGravity.filter(function(e){return t.has(e)});this.graphManager.setAllNodesToApplyGravitation(n),this.positionNodesRandomly()}}else if(c.TREE_REDUCTION_ON_INCREMENTAL){this.reduceTrees(),this.graphManager.resetAllNodesToApplyGravitation();var t=new Set(this.getAllNodes()),n=this.nodesWithGravity.filter(function(e){return t.has(e)});this.graphManager.setAllNodesToApplyGravitation(n)}return this.initSpringEmbedder(),this.runSpringEmbedder(),!0},v.prototype.tick=function(){if(this.totalIterations++,this.totalIterations===this.maxIterations&&!this.isTreeGrowing&&!this.isGrowthFinished)if(this.prunedNodesAll.length>0)this.isTreeGrowing=!0;else return!0;if(this.totalIterations%l.CONVERGENCE_CHECK_PERIOD==0&&!this.isTreeGrowing&&!this.isGrowthFinished){if(this.isConverged())if(this.prunedNodesAll.length>0)this.isTreeGrowing=!0;else return!0;this.coolingCycle++,this.layoutQuality==0?this.coolingAdjuster=this.coolingCycle:this.layoutQuality==1&&(this.coolingAdjuster=this.coolingCycle/3),this.coolingFactor=Math.max(this.initialCoolingFactor-this.coolingCycle**+(Math.log(100*(this.initialCoolingFactor-this.finalTemperature))/Math.log(this.maxCoolingCycle))/100*this.coolingAdjuster,this.finalTemperature),this.animationPeriod=Math.ceil(this.initialAnimationPeriod*Math.sqrt(this.coolingFactor))}if(this.isTreeGrowing){if(this.growTreeIterations%10==0)if(this.prunedNodesAll.length>0){this.graphManager.updateBounds(),this.updateGrid(),this.growTree(this.prunedNodesAll),this.graphManager.resetAllNodesToApplyGravitation();var e=new Set(this.getAllNodes()),t=this.nodesWithGravity.filter(function(t){return e.has(t)});this.graphManager.setAllNodesToApplyGravitation(t),this.graphManager.updateBounds(),this.updateGrid(),this.coolingFactor=l.DEFAULT_COOLING_FACTOR_INCREMENTAL}else this.isTreeGrowing=!1,this.isGrowthFinished=!0;this.growTreeIterations++}if(this.isGrowthFinished){if(this.isConverged())return!0;this.afterGrowthIterations%10==0&&(this.graphManager.updateBounds(),this.updateGrid()),this.coolingFactor=l.DEFAULT_COOLING_FACTOR_INCREMENTAL*((100-this.afterGrowthIterations)/100),this.afterGrowthIterations++}var n=!this.isTreeGrowing&&!this.isGrowthFinished,r=this.growTreeIterations%10==1&&this.isTreeGrowing||this.afterGrowthIterations%10==1&&this.isGrowthFinished;return this.totalDisplacement=0,this.graphManager.updateBounds(),this.calcSpringForces(),this.calcRepulsionForces(n,r),this.calcGravitationalForces(),this.moveNodes(),this.animate(),!1},v.prototype.getPositionsData=function(){for(var e=this.graphManager.getAllNodes(),t={},n=0;n<e.length;n++){var r=e[n].rect,i=e[n].id;t[i]={id:i,x:r.getCenterX(),y:r.getCenterY(),w:r.width,h:r.height}}return t},v.prototype.runSpringEmbedder=function(){this.initialAnimationPeriod=25,this.animationPeriod=this.initialAnimationPeriod;var e=!1;if(l.ANIMATE===`during`)this.emit(`layoutstarted`);else{for(;!e;)e=this.tick();this.graphManager.updateBounds()}},v.prototype.calculateNodesToApplyGravitationTo=function(){var e=[],t,n=this.graphManager.getGraphs(),r=n.length,i;for(i=0;i<r;i++)t=n[i],t.updateConnected(),t.isConnected||(e=e.concat(t.getNodes()));return e},v.prototype.createBendpoints=function(){var e=[];e=e.concat(this.graphManager.getAllEdges());var t=new Set,n;for(n=0;n<e.length;n++){var r=e[n];if(!t.has(r)){var i=r.getSource(),a=r.getTarget();if(i==a)r.getBendpoints().push(new f),r.getBendpoints().push(new f),this.createDummyNodesForBendpoints(r),t.add(r);else{var o=[];if(o=o.concat(i.getEdgeListToNode(a)),o=o.concat(a.getEdgeListToNode(i)),!t.has(o[0])){if(o.length>1){var s;for(s=0;s<o.length;s++){var c=o[s];c.getBendpoints().push(new f),this.createDummyNodesForBendpoints(c)}}o.forEach(function(e){t.add(e)})}}}if(t.size==e.length)break}},v.prototype.positionNodesRadially=function(e){for(var t=new d(0,0),n=Math.ceil(Math.sqrt(e.length)),r=0,i=0,a=0,o=new f(0,0),s=0;s<e.length;s++){s%n==0&&(a=0,i=r,s!=0&&(i+=c.DEFAULT_COMPONENT_SEPERATION),r=0);var l=e[s],m=p.findCenterOfTree(l);t.x=a,t.y=i,o=v.radialLayout(l,m,t),o.y>r&&(r=Math.floor(o.y)),a=Math.floor(o.x+c.DEFAULT_COMPONENT_SEPERATION)}this.transform(new f(u.WORLD_CENTER_X-o.x/2,u.WORLD_CENTER_Y-o.y/2))},v.radialLayout=function(e,t,n){var r=Math.max(this.maxDiagonalInTree(e),c.DEFAULT_RADIAL_SEPARATION);v.branchRadialLayout(t,null,0,359,0,r);var i=g.calculateBounds(e),a=new _;a.setDeviceOrgX(i.getMinX()),a.setDeviceOrgY(i.getMinY()),a.setWorldOrgX(n.x),a.setWorldOrgY(n.y);for(var o=0;o<e.length;o++)e[o].transform(a);var s=new f(i.getMaxX(),i.getMaxY());return a.inverseTransformPoint(s)},v.branchRadialLayout=function(e,t,n,r,i,a){var o=(r-n+1)/2;o<0&&(o+=180);var s=(o+n)%360*h.TWO_PI/360,c=i*Math.cos(s),l=i*Math.sin(s);e.setCenter(c,l);var u=[];u=u.concat(e.getEdges());var d=u.length;t!=null&&d--;for(var f=0,p=u.length,m,g=e.getEdgesBetween(t);g.length>1;){var _=g[0];g.splice(0,1);var y=u.indexOf(_);y>=0&&u.splice(y,1),p--,d--}m=t==null?0:(u.indexOf(g[0])+1)%p;for(var b=Math.abs(r-n)/d,x=m;f!=d;x=++x%p){var S=u[x].getOtherEnd(e);if(S!=t){var C=(n+f*b)%360,w=(C+b)%360;v.branchRadialLayout(S,e,C,w,i+a,a),f++}}},v.maxDiagonalInTree=function(e){for(var t=m.MIN_VALUE,n=0;n<e.length;n++){var r=e[n].getDiagonal();r>t&&(t=r)}return t},v.prototype.calcRepulsionRange=function(){return 2*(this.level+1)*this.idealEdgeLength},v.prototype.groupZeroDegreeMembers=function(){var e=this,t={};this.memberGroups={},this.idToDummyNode={};for(var n=[],r=this.graphManager.getAllNodes(),i=0;i<r.length;i++){var a=r[i],s=a.getParent();this.getNodeDegreeWithChildren(a)===0&&(s.id==null||!this.getToBeTiled(s))&&n.push(a)}for(var i=0;i<n.length;i++){var a=n[i],c=a.getParent().id;t[c]===void 0&&(t[c]=[]),t[c]=t[c].concat(a)}Object.keys(t).forEach(function(n){if(t[n].length>1){var r=`DummyCompound_`+n;e.memberGroups[r]=t[n];var i=t[n][0].getParent(),a=new o(e.graphManager);a.id=r,a.paddingLeft=i.paddingLeft||0,a.paddingRight=i.paddingRight||0,a.paddingBottom=i.paddingBottom||0,a.paddingTop=i.paddingTop||0,e.idToDummyNode[r]=a;var s=e.getGraphManager().add(e.newGraph(),a),c=i.getChild();c.add(a);for(var l=0;l<t[n].length;l++){var u=t[n][l];c.remove(u),s.add(u)}}})},v.prototype.clearCompounds=function(){var e={},t={};this.performDFSOnCompounds();for(var n=0;n<this.compoundOrder.length;n++)t[this.compoundOrder[n].id]=this.compoundOrder[n],e[this.compoundOrder[n].id]=[].concat(this.compoundOrder[n].getChild().getNodes()),this.graphManager.remove(this.compoundOrder[n].getChild()),this.compoundOrder[n].child=null;this.graphManager.resetAllNodes(),this.tileCompoundMembers(e,t)},v.prototype.clearZeroDegreeMembers=function(){var e=this,t=this.tiledZeroDegreePack=[];Object.keys(this.memberGroups).forEach(function(n){var r=e.idToDummyNode[n];t[n]=e.tileNodes(e.memberGroups[n],r.paddingLeft+r.paddingRight),r.rect.width=t[n].width,r.rect.height=t[n].height})},v.prototype.repopulateCompounds=function(){for(var e=this.compoundOrder.length-1;e>=0;e--){var t=this.compoundOrder[e],n=t.id,r=t.paddingLeft,i=t.paddingTop;this.adjustLocations(this.tiledMemberPack[n],t.rect.x,t.rect.y,r,i)}},v.prototype.repopulateZeroDegreeMembers=function(){var e=this,t=this.tiledZeroDegreePack;Object.keys(t).forEach(function(n){var r=e.idToDummyNode[n],i=r.paddingLeft,a=r.paddingTop;e.adjustLocations(t[n],r.rect.x,r.rect.y,i,a)})},v.prototype.getToBeTiled=function(e){var t=e.id;if(this.toBeTiled[t]!=null)return this.toBeTiled[t];var n=e.getChild();if(n==null)return this.toBeTiled[t]=!1,!1;for(var r=n.getNodes(),i=0;i<r.length;i++){var a=r[i];if(this.getNodeDegree(a)>0)return this.toBeTiled[t]=!1,!1;if(a.getChild()==null){this.toBeTiled[a.id]=!1;continue}if(!this.getToBeTiled(a))return this.toBeTiled[t]=!1,!1}return this.toBeTiled[t]=!0,!0},v.prototype.getNodeDegree=function(e){e.id;for(var t=e.getEdges(),n=0,r=0;r<t.length;r++){var i=t[r];i.getSource().id!==i.getTarget().id&&(n+=1)}return n},v.prototype.getNodeDegreeWithChildren=function(e){var t=this.getNodeDegree(e);if(e.getChild()==null)return t;for(var n=e.getChild().getNodes(),r=0;r<n.length;r++){var i=n[r];t+=this.getNodeDegreeWithChildren(i)}return t},v.prototype.performDFSOnCompounds=function(){this.compoundOrder=[],this.fillCompexOrderByDFS(this.graphManager.getRoot().getNodes())},v.prototype.fillCompexOrderByDFS=function(e){for(var t=0;t<e.length;t++){var n=e[t];n.getChild()!=null&&this.fillCompexOrderByDFS(n.getChild().getNodes()),this.getToBeTiled(n)&&this.compoundOrder.push(n)}},v.prototype.adjustLocations=function(e,t,n,r,i){t+=r,n+=i;for(var a=t,o=0;o<e.rows.length;o++){var s=e.rows[o];t=a;for(var c=0,l=0;l<s.length;l++){var u=s[l];u.rect.x=t,u.rect.y=n,t+=u.rect.width+e.horizontalPadding,u.rect.height>c&&(c=u.rect.height)}n+=c+e.verticalPadding}},v.prototype.tileCompoundMembers=function(e,t){var n=this;this.tiledMemberPack=[],Object.keys(e).forEach(function(r){var i=t[r];n.tiledMemberPack[r]=n.tileNodes(e[r],i.paddingLeft+i.paddingRight),i.rect.width=n.tiledMemberPack[r].width,i.rect.height=n.tiledMemberPack[r].height})},v.prototype.tileNodes=function(e,t){var n={rows:[],rowWidth:[],rowHeight:[],width:0,height:t,verticalPadding:c.TILING_PADDING_VERTICAL,horizontalPadding:c.TILING_PADDING_HORIZONTAL};e.sort(function(e,t){return e.rect.width*e.rect.height>t.rect.width*t.rect.height?-1:+(e.rect.width*e.rect.height<t.rect.width*t.rect.height)});for(var r=0;r<e.length;r++){var i=e[r];n.rows.length==0?this.insertNodeToRow(n,i,0,t):this.canAddHorizontal(n,i.rect.width,i.rect.height)?this.insertNodeToRow(n,i,this.getShortestRowIndex(n),t):this.insertNodeToRow(n,i,n.rows.length,t),this.shiftToLastRow(n)}return n},v.prototype.insertNodeToRow=function(e,t,n,r){var i=r;n==e.rows.length&&(e.rows.push([]),e.rowWidth.push(i),e.rowHeight.push(0));var a=e.rowWidth[n]+t.rect.width;e.rows[n].length>0&&(a+=e.horizontalPadding),e.rowWidth[n]=a,e.width<a&&(e.width=a);var o=t.rect.height;n>0&&(o+=e.verticalPadding);var s=0;o>e.rowHeight[n]&&(s=e.rowHeight[n],e.rowHeight[n]=o,s=e.rowHeight[n]-s),e.height+=s,e.rows[n].push(t)},v.prototype.getShortestRowIndex=function(e){for(var t=-1,n=Number.MAX_VALUE,r=0;r<e.rows.length;r++)e.rowWidth[r]<n&&(t=r,n=e.rowWidth[r]);return t},v.prototype.getLongestRowIndex=function(e){for(var t=-1,n=Number.MIN_VALUE,r=0;r<e.rows.length;r++)e.rowWidth[r]>n&&(t=r,n=e.rowWidth[r]);return t},v.prototype.canAddHorizontal=function(e,t,n){var r=this.getShortestRowIndex(e);if(r<0)return!0;var i=e.rowWidth[r];if(i+e.horizontalPadding+t<=e.width)return!0;var a=0;e.rowHeight[r]<n&&r>0&&(a=n+e.verticalPadding-e.rowHeight[r]);var o=e.width-i>=t+e.horizontalPadding?(e.height+a)/(i+t+e.horizontalPadding):(e.height+a)/e.width;a=n+e.verticalPadding;var s=e.width<t?(e.height+a)/t:(e.height+a)/e.width;return s<1&&(s=1/s),o<1&&(o=1/o),o<s},v.prototype.shiftToLastRow=function(e){var t=this.getLongestRowIndex(e),n=e.rowWidth.length-1,r=e.rows[t],i=r[r.length-1],a=i.width+e.horizontalPadding;if(e.width-e.rowWidth[n]>a&&t!=n){r.splice(-1,1),e.rows[n].push(i),e.rowWidth[t]=e.rowWidth[t]-a,e.rowWidth[n]=e.rowWidth[n]+a,e.width=e.rowWidth[instance.getLongestRowIndex(e)];for(var o=Number.MIN_VALUE,s=0;s<r.length;s++)r[s].height>o&&(o=r[s].height);t>0&&(o+=e.verticalPadding);var c=e.rowHeight[t]+e.rowHeight[n];e.rowHeight[t]=o,e.rowHeight[n]<i.height+e.verticalPadding&&(e.rowHeight[n]=i.height+e.verticalPadding);var l=e.rowHeight[t]+e.rowHeight[n];e.height+=l-c,this.shiftToLastRow(e)}},v.prototype.tilingPreLayout=function(){c.TILE&&(this.groupZeroDegreeMembers(),this.clearCompounds(),this.clearZeroDegreeMembers())},v.prototype.tilingPostLayout=function(){c.TILE&&(this.repopulateZeroDegreeMembers(),this.repopulateCompounds())},v.prototype.reduceTrees=function(){for(var e=[],t=!0,n;t;){var r=this.graphManager.getAllNodes(),i=[];t=!1;for(var a=0;a<r.length;a++)n=r[a],n.getEdges().length==1&&!n.getEdges()[0].isInterGraph&&n.getChild()==null&&(i.push([n,n.getEdges()[0],n.getOwner()]),t=!0);if(t==1){for(var o=[],s=0;s<i.length;s++)i[s][0].getEdges().length==1&&(o.push(i[s]),i[s][0].getOwner().remove(i[s][0]));e.push(o),this.graphManager.resetAllNodes(),this.graphManager.resetAllEdges()}}this.prunedNodesAll=e},v.prototype.growTree=function(e){for(var t=e[e.length-1],n,r=0;r<t.length;r++)n=t[r],this.findPlaceforPrunedNode(n),n[2].add(n[0]),n[2].add(n[1],n[1].source,n[1].target);e.splice(e.length-1,1),this.graphManager.resetAllNodes(),this.graphManager.resetAllEdges()},v.prototype.findPlaceforPrunedNode=function(e){var t,n,r=e[0];n=r==e[1].source?e[1].target:e[1].source;var i=n.startX,a=n.finishX,o=n.startY,s=n.finishY,c=[0,0,0,0];if(o>0)for(var u=i;u<=a;u++)c[0]+=this.grid[u][o-1].length+this.grid[u][o].length-1;if(a<this.grid.length-1)for(var u=o;u<=s;u++)c[1]+=this.grid[a+1][u].length+this.grid[a][u].length-1;if(s<this.grid[0].length-1)for(var u=i;u<=a;u++)c[2]+=this.grid[u][s+1].length+this.grid[u][s].length-1;if(i>0)for(var u=o;u<=s;u++)c[3]+=this.grid[i-1][u].length+this.grid[i][u].length-1;for(var d=m.MAX_VALUE,f,p,h=0;h<c.length;h++)c[h]<d?(d=c[h],f=1,p=h):c[h]==d&&f++;if(f==3&&d==0)c[0]==0&&c[1]==0&&c[2]==0?t=1:c[0]==0&&c[1]==0&&c[3]==0?t=0:c[0]==0&&c[2]==0&&c[3]==0?t=3:c[1]==0&&c[2]==0&&c[3]==0&&(t=2);else if(f==2&&d==0){var g=Math.floor(Math.random()*2);t=c[0]==0&&c[1]==0?g==0?0:1:c[0]==0&&c[2]==0?g==0?0:2:c[0]==0&&c[3]==0?g==0?0:3:c[1]==0&&c[2]==0?g==0?1:2:c[1]==0&&c[3]==0?g==0?1:3:g==0?2:3}else if(f==4&&d==0){var g=Math.floor(Math.random()*4);t=g}else t=p;t==0?r.setCenter(n.getCenterX(),n.getCenterY()-n.getHeight()/2-l.DEFAULT_EDGE_LENGTH-r.getHeight()/2):t==1?r.setCenter(n.getCenterX()+n.getWidth()/2+l.DEFAULT_EDGE_LENGTH+r.getWidth()/2,n.getCenterY()):t==2?r.setCenter(n.getCenterX(),n.getCenterY()+n.getHeight()/2+l.DEFAULT_EDGE_LENGTH+r.getHeight()/2):r.setCenter(n.getCenterX()-n.getWidth()/2-l.DEFAULT_EDGE_LENGTH-r.getWidth()/2,n.getCenterY())},e.exports=v}),(function(e,t,n){var r={};r.layoutBase=n(0),r.CoSEConstants=n(1),r.CoSEEdge=n(2),r.CoSEGraph=n(3),r.CoSEGraphManager=n(4),r.CoSELayout=n(6),r.CoSENode=n(5),e.exports=r})])})})),c=e(t(((e,t)=>{(function(n,r){typeof e==`object`&&typeof t==`object`?t.exports=r(s()):typeof define==`function`&&define.amd?define([`cose-base`],r):typeof e==`object`?e.cytoscapeCoseBilkent=r(s()):n.cytoscapeCoseBilkent=r(n.coseBase)})(e,function(e){return(function(e){var t={};function n(r){if(t[r])return t[r].exports;var i=t[r]={i:r,l:!1,exports:{}};return e[r].call(i.exports,i,i.exports,n),i.l=!0,i.exports}return n.m=e,n.c=t,n.i=function(e){return e},n.d=function(e,t,r){n.o(e,t)||Object.defineProperty(e,t,{configurable:!1,enumerable:!0,get:r})},n.n=function(e){var t=e&&e.__esModule?function(){return e.default}:function(){return e};return n.d(t,`a`,t),t},n.o=function(e,t){return Object.prototype.hasOwnProperty.call(e,t)},n.p=``,n(n.s=1)})([(function(t,n){t.exports=e}),(function(e,t,n){var r=n(0).layoutBase.LayoutConstants,i=n(0).layoutBase.FDLayoutConstants,a=n(0).CoSEConstants,o=n(0).CoSELayout,s=n(0).CoSENode,c=n(0).layoutBase.PointD,l=n(0).layoutBase.DimensionD,u={ready:function(){},stop:function(){},quality:`default`,nodeDimensionsIncludeLabels:!1,refresh:30,fit:!0,padding:10,randomize:!0,nodeRepulsion:4500,idealEdgeLength:50,edgeElasticity:.45,nestingFactor:.1,gravity:.25,numIter:2500,tile:!0,animate:`end`,animationDuration:500,tilingPaddingVertical:10,tilingPaddingHorizontal:10,gravityRangeCompound:1.5,gravityCompound:1,gravityRange:3.8,initialEnergyOnIncremental:.5};function d(e,t){var n={};for(var r in e)n[r]=e[r];for(var r in t)n[r]=t[r];return n}function f(e){this.options=d(u,e),p(this.options)}var p=function(e){e.nodeRepulsion!=null&&(a.DEFAULT_REPULSION_STRENGTH=i.DEFAULT_REPULSION_STRENGTH=e.nodeRepulsion),e.idealEdgeLength!=null&&(a.DEFAULT_EDGE_LENGTH=i.DEFAULT_EDGE_LENGTH=e.idealEdgeLength),e.edgeElasticity!=null&&(a.DEFAULT_SPRING_STRENGTH=i.DEFAULT_SPRING_STRENGTH=e.edgeElasticity),e.nestingFactor!=null&&(a.PER_LEVEL_IDEAL_EDGE_LENGTH_FACTOR=i.PER_LEVEL_IDEAL_EDGE_LENGTH_FACTOR=e.nestingFactor),e.gravity!=null&&(a.DEFAULT_GRAVITY_STRENGTH=i.DEFAULT_GRAVITY_STRENGTH=e.gravity),e.numIter!=null&&(a.MAX_ITERATIONS=i.MAX_ITERATIONS=e.numIter),e.gravityRange!=null&&(a.DEFAULT_GRAVITY_RANGE_FACTOR=i.DEFAULT_GRAVITY_RANGE_FACTOR=e.gravityRange),e.gravityCompound!=null&&(a.DEFAULT_COMPOUND_GRAVITY_STRENGTH=i.DEFAULT_COMPOUND_GRAVITY_STRENGTH=e.gravityCompound),e.gravityRangeCompound!=null&&(a.DEFAULT_COMPOUND_GRAVITY_RANGE_FACTOR=i.DEFAULT_COMPOUND_GRAVITY_RANGE_FACTOR=e.gravityRangeCompound),e.initialEnergyOnIncremental!=null&&(a.DEFAULT_COOLING_FACTOR_INCREMENTAL=i.DEFAULT_COOLING_FACTOR_INCREMENTAL=e.initialEnergyOnIncremental),e.quality==`draft`?r.QUALITY=0:e.quality==`proof`?r.QUALITY=2:r.QUALITY=1,a.NODE_DIMENSIONS_INCLUDE_LABELS=i.NODE_DIMENSIONS_INCLUDE_LABELS=r.NODE_DIMENSIONS_INCLUDE_LABELS=e.nodeDimensionsIncludeLabels,a.DEFAULT_INCREMENTAL=i.DEFAULT_INCREMENTAL=r.DEFAULT_INCREMENTAL=!e.randomize,a.ANIMATE=i.ANIMATE=r.ANIMATE=e.animate,a.TILE=e.tile,a.TILING_PADDING_VERTICAL=typeof e.tilingPaddingVertical==`function`?e.tilingPaddingVertical.call():e.tilingPaddingVertical,a.TILING_PADDING_HORIZONTAL=typeof e.tilingPaddingHorizontal==`function`?e.tilingPaddingHorizontal.call():e.tilingPaddingHorizontal};f.prototype.run=function(){var e,t,n=this.options;this.idToLNode={};var r=this.layout=new o,i=this;i.stopped=!1,this.cy=this.options.cy,this.cy.trigger({type:`layoutstart`,layout:this});var a=r.newGraphManager();this.gm=a;var s=this.options.eles.nodes(),c=this.options.eles.edges();this.root=a.addRoot(),this.processChildrenList(this.root,this.getTopMostNodes(s),r);for(var l=0;l<c.length;l++){var u=c[l],d=this.idToLNode[u.data(`source`)],f=this.idToLNode[u.data(`target`)];if(d!==f&&d.getEdgesBetween(f).length==0){var p=a.add(r.newEdge(),d,f);p.id=u.id()}}var m=function(e,t){typeof e==`number`&&(e=t);var n=e.data(`id`),r=i.idToLNode[n];return{x:r.getRect().getCenterX(),y:r.getRect().getCenterY()}},h=function a(){for(var o=function(){n.fit&&n.cy.fit(n.eles,n.padding),e||(e=!0,i.cy.one(`layoutready`,n.ready),i.cy.trigger({type:`layoutready`,layout:i}))},s=i.options.refresh,c,l=0;l<s&&!c;l++)c=i.stopped||i.layout.tick();if(c){r.checkLayoutSuccess()&&!r.isSubLayout&&r.doPostLayout(),r.tilingPostLayout&&r.tilingPostLayout(),r.isLayoutFinished=!0,i.options.eles.nodes().positions(m),o(),i.cy.one(`layoutstop`,i.options.stop),i.cy.trigger({type:`layoutstop`,layout:i}),t&&cancelAnimationFrame(t),e=!1;return}var u=i.layout.getPositionsData();n.eles.nodes().positions(function(e,t){if(typeof e==`number`&&(e=t),!e.isParent()){for(var n=e.id(),r=u[n],i=e;r==null&&(r=u[i.data(`parent`)]||u[`DummyCompound_`+i.data(`parent`)],u[n]=r,i=i.parent()[0],i!=null););return r==null?{x:e.position(`x`),y:e.position(`y`)}:{x:r.x,y:r.y}}}),o(),t=requestAnimationFrame(a)};return r.addListener(`layoutstarted`,function(){i.options.animate===`during`&&(t=requestAnimationFrame(h))}),r.runLayout(),this.options.animate!==`during`&&(i.options.eles.nodes().not(`:parent`).layoutPositions(i,i.options,m),e=!1),this},f.prototype.getTopMostNodes=function(e){for(var t={},n=0;n<e.length;n++)t[e[n].id()]=!0;return e.filter(function(e,n){typeof e==`number`&&(e=n);for(var r=e.parent()[0];r!=null;){if(t[r.id()])return!1;r=r.parent()[0]}return!0})},f.prototype.processChildrenList=function(e,t,n){for(var r=t.length,i=0;i<r;i++){var a=t[i],o=a.children(),u,d=a.layoutDimensions({nodeDimensionsIncludeLabels:this.options.nodeDimensionsIncludeLabels});if(u=a.outerWidth()!=null&&a.outerHeight()!=null?e.add(new s(n.graphManager,new c(a.position(`x`)-d.w/2,a.position(`y`)-d.h/2),new l(parseFloat(d.w),parseFloat(d.h)))):e.add(new s(this.graphManager)),u.id=a.data(`id`),u.paddingLeft=parseInt(a.css(`padding`)),u.paddingTop=parseInt(a.css(`padding`)),u.paddingRight=parseInt(a.css(`padding`)),u.paddingBottom=parseInt(a.css(`padding`)),this.options.nodeDimensionsIncludeLabels&&a.isParent()){var f=a.boundingBox({includeLabels:!0,includeNodes:!1}).w,p=a.boundingBox({includeLabels:!0,includeNodes:!1}).h,m=a.css(`text-halign`);u.labelWidth=f,u.labelHeight=p,u.labelPos=m}if(this.idToLNode[a.data(`id`)]=u,isNaN(u.rect.x)&&(u.rect.x=0),isNaN(u.rect.y)&&(u.rect.y=0),o!=null&&o.length>0){var h=n.getGraphManager().add(n.newGraph(),u);this.processChildrenList(h,o,n)}}},f.prototype.stop=function(){return this.stopped=!0,this};var m=function(e){e(`layout`,`cose-bilkent`,f)};typeof cytoscape<`u`&&m(cytoscape),e.exports=m})])})}))(),1);a.use(c.default);function l(e,t){e.forEach(e=>{let n={id:e.id,labelText:e.label,height:e.height,width:e.width,padding:e.padding??0};Object.keys(e).forEach(t=>{[`id`,`label`,`height`,`width`,`padding`,`x`,`y`].includes(t)||(n[t]=e[t])}),t.add({group:`nodes`,data:n,position:{x:e.x??0,y:e.y??0}})})}n(l,`addNodes`);function u(e,t){e.forEach(e=>{let n={id:e.id,source:e.start,target:e.end};Object.keys(e).forEach(t=>{[`id`,`start`,`end`].includes(t)||(n[t]=e[t])}),t.add({group:`edges`,data:n})})}n(u,`addEdges`);function d(e){return new Promise(t=>{let n=i(`body`).append(`div`).attr(`id`,`cy`).attr(`style`,`display:none`),o=a({container:document.getElementById(`cy`),style:[{selector:`edge`,style:{"curve-style":`bezier`}}]});n.remove(),l(e.nodes,o),u(e.edges,o),o.nodes().forEach(function(e){e.layoutDimensions=()=>{let t=e.data();return{w:t.width,h:t.height}}}),o.layout({name:`cose-bilkent`,quality:`proof`,styleEnabled:!1,animate:!1}).run(),o.ready(e=>{r.info(`Cytoscape ready`,e),t(o)})})}n(d,`createCytoscapeInstance`);function f(e){return e.nodes().map(e=>{let t=e.data(),n=e.position(),r={id:t.id,x:n.x,y:n.y};return Object.keys(t).forEach(e=>{e!==`id`&&(r[e]=t[e])}),r})}n(f,`extractPositionedNodes`);function p(e){return e.edges().map(e=>{let t=e.data(),n=e._private.rscratch,r={id:t.id,source:t.source,target:t.target,startX:n.startX,startY:n.startY,midX:n.midX,midY:n.midY,endX:n.endX,endY:n.endY};return Object.keys(t).forEach(e=>{[`id`,`source`,`target`].includes(e)||(r[e]=t[e])}),r})}n(p,`extractPositionedEdges`);async function m(e,t){r.debug(`Starting cose-bilkent layout algorithm`);try{h(e);let t=await d(e),n=f(t),i=p(t);return r.debug(`Layout completed: ${n.length} nodes, ${i.length} edges`),{nodes:n,edges:i}}catch(e){throw r.error(`Error in cose-bilkent layout algorithm:`,e),e}}n(m,`executeCoseBilkentLayout`);function h(e){if(!e)throw Error(`Layout data is required`);if(!e.config)throw Error(`Configuration is required in layout data`);if(!e.rootNode)throw Error(`Root node is required`);if(!e.nodes||!Array.isArray(e.nodes))throw Error(`No nodes found in layout data`);if(!Array.isArray(e.edges))throw Error(`Edges array is required in layout data`);return!0}n(h,`validateLayoutData`);var g=n(async(e,t,{insertCluster:n,insertEdge:r,insertEdgeLabel:i,insertMarkers:a,insertNode:o,log:s,positionEdgeLabel:c},{algorithm:l})=>{let u={},d={},f=t.select(`g`);a(f,e.markers,e.type,e.diagramId);let p=f.insert(`g`).attr(`class`,`subgraphs`),h=f.insert(`g`).attr(`class`,`edgePaths`),g=f.insert(`g`).attr(`class`,`edgeLabels`),_=f.insert(`g`).attr(`class`,`nodes`);s.debug(`Inserting nodes into DOM for dimension calculation`),await Promise.all(e.nodes.map(async t=>{if(t.isGroup){let e={...t};d[t.id]=e,u[t.id]=e,await n(p,t)}else{let n={...t};u[t.id]=n;let r=await o(_,t,{config:e.config,dir:e.direction||`TB`}),i=r.node().getBBox();n.width=i.width,n.height=i.height,n.domId=r,s.debug(`Node ${t.id} dimensions: ${i.width}x${i.height}`)}})),s.debug(`Running cose-bilkent layout algorithm`);let v=await m({...e,nodes:e.nodes.map(e=>{let t=u[e.id];return{...e,width:t.width,height:t.height}})},e.config);s.debug(`Positioning nodes based on layout results`),v.nodes.forEach(e=>{let t=u[e.id];t?.domId&&(t.domId.attr(`transform`,`translate(${e.x}, ${e.y})`),t.x=e.x,t.y=e.y,s.debug(`Positioned node ${t.id} at center (${e.x}, ${e.y})`))}),v.edges.forEach(t=>{let n=e.edges.find(e=>e.id===t.id);n&&(n.points=[{x:t.startX,y:t.startY},{x:t.midX,y:t.midY},{x:t.endX,y:t.endY}])}),s.debug(`Inserting and positioning edges`),await Promise.all(e.edges.map(async t=>{await i(g,t);let n=u[t.start??``],a=u[t.end??``];if(n&&a){let i=v.edges.find(e=>e.id===t.id);if(i){s.debug(`APA01 positionedEdge`,i);let o={...t};c(o,r(h,o,d,e.type,n,a,e.diagramId))}else{let i={...t,points:[{x:n.x||0,y:n.y||0},{x:a.x||0,y:a.y||0}]};c(i,r(h,i,d,e.type,n,a,e.diagramId))}}})),s.debug(`Cose-bilkent rendering completed`)},`render`);export{g as render};