@inflexa-ai/harness 0.39.2 → 0.40.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +2 -3
- package/dist/agents/conversation-agent.d.ts +3 -0
- package/dist/agents/conversation-agent.js +13 -2
- package/dist/agents/report-session-agent.d.ts +3 -0
- package/dist/agents/report-session-agent.js +2 -0
- package/dist/agents/sandbox/cheminformatics-agent.js +0 -3
- package/dist/agents/sandbox/shared.d.ts +11 -2
- package/dist/agents/sandbox/shared.js +4 -0
- package/dist/app/chat-turn.d.ts +75 -12
- package/dist/app/chat-turn.js +149 -21
- package/dist/app/message-assembly.d.ts +16 -52
- package/dist/app/message-assembly.js +41 -68
- package/dist/app/run-activity.d.ts +4 -6
- package/dist/app/run-activity.js +7 -27
- package/dist/app/spawn-report-session.d.ts +6 -11
- package/dist/app/spawn-report-session.js +5 -6
- package/dist/app/synthesize-run.d.ts +3 -0
- package/dist/app/synthesize-run.js +1 -0
- package/dist/billing/usage-recorder.d.ts +3 -4
- package/dist/billing/usage-recorder.js +3 -4
- package/dist/contracts/chat-parts.d.ts +11 -1
- package/dist/contracts/chat-parts.js +1 -0
- package/dist/contracts/index.d.ts +1 -1
- package/dist/contracts/part-registry.js +1 -0
- package/dist/contracts/report-blocks.d.ts +8 -8
- package/dist/contracts/schemas/chat-parts.d.ts +32 -9
- package/dist/contracts/schemas/chat-parts.js +10 -0
- package/dist/execution/artifact-metadata.d.ts +26 -33
- package/dist/execution/artifact-metadata.js +44 -106
- package/dist/execution/post-step-pipeline.d.ts +23 -16
- package/dist/execution/post-step-pipeline.js +19 -21
- package/dist/execution/run-synthesis.d.ts +3 -0
- package/dist/execution/run-synthesis.js +11 -1
- package/dist/execution/step-summary.d.ts +21 -30
- package/dist/execution/step-summary.js +30 -57
- package/dist/index.d.ts +9 -8
- package/dist/index.js +15 -34
- package/dist/lib/zod-issues.js +2 -4
- package/dist/loop/compaction.d.ts +20 -0
- package/dist/loop/compaction.js +2 -0
- package/dist/loop/continue-agent.d.ts +40 -0
- package/dist/loop/continue-agent.js +38 -0
- package/dist/loop/metrics.d.ts +30 -22
- package/dist/loop/metrics.js +51 -22
- package/dist/loop/run-agent.d.ts +111 -13
- package/dist/loop/run-agent.js +467 -220
- package/dist/loop/run-to-terminal.d.ts +16 -17
- package/dist/loop/run-to-terminal.js +24 -35
- package/dist/loop/tool-mask.d.ts +23 -0
- package/dist/loop/tool-mask.js +46 -0
- package/dist/loop/tool-output.d.ts +48 -0
- package/dist/loop/tool-output.js +79 -0
- package/dist/loop/types.d.ts +6 -3
- package/dist/memory/ai-sdk-message-storage.d.ts +49 -2
- package/dist/memory/ai-sdk-message-storage.js +78 -2
- package/dist/memory/conversation-display-recorder.d.ts +6 -0
- package/dist/memory/conversation-display-recorder.js +64 -22
- package/dist/memory/conversation-display-replay.d.ts +5 -14
- package/dist/memory/conversation-display-replay.js +66 -32
- package/dist/memory/conversation-display-storage.d.ts +2 -1
- package/dist/memory/conversation-display-storage.js +2 -1
- package/dist/memory/conversation-view.d.ts +53 -0
- package/dist/memory/conversation-view.js +130 -0
- package/dist/memory/count-tokens.d.ts +5 -7
- package/dist/memory/count-tokens.js +7 -9
- package/dist/memory/thread-history.d.ts +74 -102
- package/dist/memory/thread-history.js +181 -246
- package/dist/memory/thread-store.d.ts +3 -3
- package/dist/memory/thread-store.js +7 -2
- package/dist/memory/tool-call-integrity.d.ts +15 -21
- package/dist/memory/tool-call-integrity.js +31 -38
- package/dist/memory/working-memory.d.ts +2 -5
- package/dist/memory/working-memory.js +2 -5
- package/dist/prompts/SOUL.d.ts +2 -2
- package/dist/prompts/SOUL.js +2 -7
- package/dist/prompts/analogical-reasoner.d.ts +1 -1
- package/dist/prompts/analogical-reasoner.js +16 -32
- package/dist/prompts/briefing.js +1 -1
- package/dist/prompts/compaction.d.ts +4 -0
- package/dist/prompts/compaction.js +24 -0
- package/dist/prompts/conversation.d.ts +1 -1
- package/dist/prompts/conversation.js +26 -35
- package/dist/prompts/execute-analysis/step-summary.js +7 -5
- package/dist/prompts/literature-reviewer.d.ts +1 -1
- package/dist/prompts/literature-reviewer.js +29 -34
- package/dist/prompts/planner.js +15 -29
- package/dist/prompts/report-session.d.ts +1 -1
- package/dist/prompts/report-session.js +2 -33
- package/dist/prompts/sandbox/bulk-transcriptomics-agent.d.ts +1 -1
- package/dist/prompts/sandbox/bulk-transcriptomics-agent.js +1 -2
- package/dist/prompts/sandbox/cheminformatics-agent.d.ts +1 -1
- package/dist/prompts/sandbox/cheminformatics-agent.js +10 -29
- package/dist/prompts/sandbox/chromatin-agent.d.ts +1 -1
- package/dist/prompts/sandbox/chromatin-agent.js +1 -2
- package/dist/prompts/sandbox/data-profiler.js +6 -3
- package/dist/prompts/sandbox/dna-methylation-agent.d.ts +1 -1
- package/dist/prompts/sandbox/dna-methylation-agent.js +2 -7
- package/dist/prompts/sandbox/drug-repurposing-agent.d.ts +1 -1
- package/dist/prompts/sandbox/drug-repurposing-agent.js +20 -24
- package/dist/prompts/sandbox/enrichment-agent.d.ts +1 -1
- package/dist/prompts/sandbox/enrichment-agent.js +3 -2
- package/dist/prompts/sandbox/genomic-variant-agent.d.ts +1 -1
- package/dist/prompts/sandbox/genomic-variant-agent.js +0 -2
- package/dist/prompts/sandbox/immune-profiling-agent.d.ts +1 -1
- package/dist/prompts/sandbox/immune-profiling-agent.js +7 -14
- package/dist/prompts/sandbox/metabolomics-agent.d.ts +1 -1
- package/dist/prompts/sandbox/metabolomics-agent.js +0 -2
- package/dist/prompts/sandbox/microbiome-agent.d.ts +1 -1
- package/dist/prompts/sandbox/microbiome-agent.js +14 -21
- package/dist/prompts/sandbox/multi-omics-integration-agent.d.ts +1 -1
- package/dist/prompts/sandbox/multi-omics-integration-agent.js +9 -19
- package/dist/prompts/sandbox/multimodal-sc-agent.d.ts +1 -1
- package/dist/prompts/sandbox/multimodal-sc-agent.js +4 -5
- package/dist/prompts/sandbox/network-agent.d.ts +1 -1
- package/dist/prompts/sandbox/network-agent.js +7 -8
- package/dist/prompts/sandbox/pkpd-clinical-response-agent.d.ts +1 -1
- package/dist/prompts/sandbox/pkpd-clinical-response-agent.js +19 -19
- package/dist/prompts/sandbox/proteomics-agent.d.ts +1 -1
- package/dist/prompts/sandbox/proteomics-agent.js +3 -4
- package/dist/prompts/sandbox/scientific-executor.d.ts +1 -1
- package/dist/prompts/sandbox/scientific-executor.js +7 -10
- package/dist/prompts/sandbox/single-cell-agent.d.ts +1 -1
- package/dist/prompts/sandbox/single-cell-agent.js +2 -4
- package/dist/prompts/sandbox/spatial-omics-agent.d.ts +1 -1
- package/dist/prompts/sandbox/spatial-omics-agent.js +3 -5
- package/dist/prompts/sandbox/statistical-modeling-agent.d.ts +1 -1
- package/dist/prompts/sandbox/statistical-modeling-agent.js +1 -1
- package/dist/prompts/sandbox/translational-safety-agent.d.ts +1 -1
- package/dist/prompts/sandbox/translational-safety-agent.js +10 -19
- package/dist/prompts/sandbox-standards.d.ts +7 -7
- package/dist/prompts/sandbox-standards.js +74 -76
- package/dist/prompts/synthesis-agent.d.ts +1 -1
- package/dist/prompts/synthesis-agent.js +16 -42
- package/dist/providers/ai-sdk.d.ts +39 -6
- package/dist/providers/ai-sdk.js +117 -18
- package/dist/providers/errors.d.ts +2 -0
- package/dist/providers/errors.js +5 -0
- package/dist/providers/prompt-cache.d.ts +43 -41
- package/dist/providers/prompt-cache.js +47 -41
- package/dist/providers/reasoning.d.ts +10 -21
- package/dist/providers/reasoning.js +10 -21
- package/dist/providers/types.d.ts +21 -5
- package/dist/report-model/authoring-grammar.d.ts +2 -2
- package/dist/runtime/assemble.d.ts +9 -7
- package/dist/runtime/assemble.js +7 -3
- package/dist/sandbox/create-sandbox.d.ts +2 -2
- package/dist/sandbox/submit-exec.d.ts +1 -1
- package/dist/schemas/artifact-manifest.d.ts +4 -4
- package/dist/state/init.js +39 -4
- package/dist/state/purge-analysis.js +4 -0
- package/dist/state/tool-outputs.d.ts +4 -0
- package/dist/state/tool-outputs.js +30 -0
- package/dist/tasks/data-profile.d.ts +3 -0
- package/dist/tasks/data-profile.js +2 -0
- package/dist/tools/ad-hoc-router.d.ts +8 -0
- package/dist/tools/ad-hoc-router.js +21 -2
- package/dist/tools/display/show-user.d.ts +1 -1
- package/dist/tools/execute-analysis.d.ts +3 -0
- package/dist/tools/execute-analysis.js +9 -1
- package/dist/tools/read-tool-output.d.ts +7 -0
- package/dist/tools/read-tool-output.js +130 -0
- package/dist/tools/research/generate-analogy-report.d.ts +10 -26
- package/dist/tools/research/generate-analogy-report.js +76 -163
- package/dist/tools/research/generate-plan.d.ts +3 -0
- package/dist/tools/research/generate-plan.js +4 -1
- package/dist/tools/research/literature-reviewer.d.ts +3 -0
- package/dist/tools/research/literature-reviewer.js +3 -0
- package/dist/tools/sandbox/report-blocker.d.ts +18 -5
- package/dist/tools/sandbox/report-blocker.js +54 -6
- package/dist/tools/sandbox/submit-file-metadata.d.ts +30 -0
- package/dist/tools/sandbox/submit-file-metadata.js +67 -0
- package/dist/tools/start-report-session.d.ts +1 -3
- package/dist/tools/start-report-session.js +0 -2
- package/dist/tools/workspace/execute-command.js +7 -4
- package/dist/tools/workspace/result-bounds.d.ts +4 -4
- package/dist/tools/workspace/result-bounds.js +6 -5
- package/dist/tools/workspace/workspace-search.d.ts +1 -1
- package/dist/workflows/execute-analysis.d.ts +3 -0
- package/dist/workflows/execute-analysis.js +1 -0
- package/dist/workflows/sandbox-step.d.ts +30 -9
- package/dist/workflows/sandbox-step.js +37 -8
- package/package.json +9 -9
- package/dist/providers/anthropic.d.ts +0 -25
- package/dist/providers/anthropic.js +0 -28
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/**
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* Compatibility entry point for Anthropic-backed chat.
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*
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* The production provider path is AI SDK-backed; this wrapper preserves the
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* old factory name for embedders while returning the new `ChatProvider` seam.
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*/
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import { createConfiguredAiSdkProvider, hostPolicyOf } from "./ai-sdk.js";
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/**
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* Convenience over the `anthropic` arm of the public `AiSdkProviderConfig`
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* union: it takes the Anthropic connection fields directly (`token` as the api
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* key) and delegates to `createConfiguredAiSdkProvider`. The same construction
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* contract holds — the `model` is bound into the returned provider.
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*/
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export function createAnthropicProvider(deps) {
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return createConfiguredAiSdkProvider({
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...hostPolicyOf(deps),
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logger: deps.logger,
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config: {
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kind: "anthropic",
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baseURL: deps.baseURL,
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apiKey: deps.token,
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model: deps.model,
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fetch: deps.fetch,
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capabilities: { toolCalling: true },
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...(deps.maxOutputTokens !== undefined ? { maxOutputTokens: deps.maxOutputTokens } : {}),
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},
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});
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}
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