@inflexa-ai/harness 0.26.2 → 0.26.3

package/dist/literature/sources/pubmed.js

@@ -24,6 +24,10 @@ const xmlParser = new XMLParser({
     attributeNamePrefix: "@_",
     isArray: (name) => ["PubmedArticle", "Author", "MeshHeading", "AbstractText", "sec", "p", "record"].includes(name),
     textNodeName: "#text",
+    // Each consumer reads a text node as a string. Without this option the
+    // parser turns a numeric text node into a number, and a year-only PubDate
+    // then crashes the year extraction in `parseEsummary`.
+    parseTagValue: false,
 });
 function getItemValue(items, name) {
     if (items === undefined)

package/dist/tools/research/literature-reviewer.js

@@ -14,7 +14,7 @@
  * entire tool call is one step in the parent loop (PR #3 caches it whole,
  * so the child never replays).
  */
-import { ok } from "neverthrow";
+import { err, ok } from "neverthrow";
 import { z } from "zod";
 import { finalText, runAgent } from "../../loop/run-agent.js";
 import { passthroughStep } from "../../loop/run-step.js";
@@ -70,7 +70,7 @@ export function createLiteratureReviewerTool(deps) {
         }),
         describeCall: "none",
         execute: async ({ brief }, ctx) => {
-            const { messages: transcript } = await runAgent(agent, [{ role: "user", content: brief }], forSubAgent(ctx.session, AGENT_ID), {
+            const { messages: transcript, finish } = await runAgent(agent, [{ role: "user", content: brief }], forSubAgent(ctx.session, AGENT_ID), {
                 provider: deps.provider,
                 signal: ctx.signal,
                 emit: ctx.emit,
@@ -82,7 +82,15 @@ export function createLiteratureReviewerTool(deps) {
                 // same frame, same call path, same loop-local step names.
                 invocationId: ctx.invocationId,
             });
-            return ok({ report: finalText(transcript) });
+            const report = finalText(transcript);
+            // A child run can end with no final text. Examples are a terminal
+            // reply with no text block, and a capped-out run whose wrap-up is
+            // empty. An ok result with an empty report hides that failure, so
+            // the tool returns an error that names the finish reason.
+            if (report.trim() === "") {
+                return err({ error: `The literature reviewer gave no report (finish reason: ${finish.reason}). Retry, or narrow the brief.`, retryable: true });
+            }
+            return ok({ report });
         },
     });
 }

package/package.json

@@ -1,6 +1,6 @@
 {
     "name": "@inflexa-ai/harness",
-    "version": "0.26.2",
+    "version": "0.26.3",
     "description": "Host-agnostic bioinformatics agent harness — hand-rolled agent loop, DBOS-durable workflows, sandboxed compute.",
     "license": "Apache-2.0",
     "type": "module",