@inflexa-ai/harness 0.15.1 → 0.17.0

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Files changed (112) hide show
  1. package/dist/agents/conversation-agent.d.ts +3 -0
  2. package/dist/agents/conversation-agent.js +5 -2
  3. package/dist/agents/sandbox/shared.d.ts +3 -0
  4. package/dist/agents/sandbox/shared.js +5 -0
  5. package/dist/agents/sandbox/types.d.ts +1 -1
  6. package/dist/app/chat-turn.d.ts +2 -0
  7. package/dist/app/chat-turn.js +11 -2
  8. package/dist/app/synthesize-run.d.ts +3 -0
  9. package/dist/app/synthesize-run.js +2 -1
  10. package/dist/citations/__fixtures__/resolver.d.ts +3 -0
  11. package/dist/citations/__fixtures__/resolver.js +9 -0
  12. package/dist/citations/aggregate.d.ts +3 -0
  13. package/dist/citations/aggregate.js +44 -0
  14. package/dist/citations/clients/arxiv.d.ts +6 -0
  15. package/dist/citations/clients/arxiv.js +34 -0
  16. package/dist/citations/clients/common.d.ts +11 -0
  17. package/dist/citations/clients/common.js +43 -0
  18. package/dist/citations/clients/crossref.d.ts +8 -0
  19. package/dist/citations/clients/crossref.js +98 -0
  20. package/dist/citations/clients/doi-registry.d.ts +3 -0
  21. package/dist/citations/clients/doi-registry.js +95 -0
  22. package/dist/citations/clients/pubmed.d.ts +6 -0
  23. package/dist/citations/clients/pubmed.js +83 -0
  24. package/dist/citations/clients/semantic-scholar.d.ts +6 -0
  25. package/dist/citations/clients/semantic-scholar.js +60 -0
  26. package/dist/citations/compare.d.ts +9 -0
  27. package/dist/citations/compare.js +72 -0
  28. package/dist/citations/match.d.ts +11 -0
  29. package/dist/citations/match.js +173 -0
  30. package/dist/citations/normalize.d.ts +31 -0
  31. package/dist/citations/normalize.js +187 -0
  32. package/dist/citations/plan.d.ts +2 -0
  33. package/dist/citations/plan.js +59 -0
  34. package/dist/citations/resolve.d.ts +28 -0
  35. package/dist/citations/resolve.js +238 -0
  36. package/dist/citations/types.d.ts +583 -0
  37. package/dist/citations/types.js +129 -0
  38. package/dist/contracts/chat-events.d.ts +16 -0
  39. package/dist/contracts/message.d.ts +13 -8
  40. package/dist/contracts/schemas/chat-events.d.ts +7 -0
  41. package/dist/contracts/schemas/chat-events.js +2 -0
  42. package/dist/contracts/schemas/chat-parts.d.ts +8 -8
  43. package/dist/contracts/target-dossier.d.ts +20 -20
  44. package/dist/execution/run-synthesis.d.ts +3 -0
  45. package/dist/execution/run-synthesis.js +1 -0
  46. package/dist/index.d.ts +14 -10
  47. package/dist/index.js +20 -16
  48. package/dist/lib/cache.d.ts +8 -0
  49. package/dist/lib/cache.js +35 -0
  50. package/dist/lib/rate-limit.d.ts +35 -0
  51. package/dist/lib/rate-limit.js +121 -0
  52. package/dist/literature/sources/arxiv.d.ts +22 -0
  53. package/dist/literature/sources/arxiv.js +103 -0
  54. package/dist/literature/sources/http.d.ts +28 -0
  55. package/dist/literature/sources/http.js +97 -0
  56. package/dist/literature/sources/pubmed.d.ts +68 -0
  57. package/dist/literature/sources/pubmed.js +266 -0
  58. package/dist/literature/sources/semantic-scholar.d.ts +24 -0
  59. package/dist/literature/sources/semantic-scholar.js +71 -0
  60. package/dist/memory/content-to-cortex.d.ts +12 -11
  61. package/dist/memory/content-to-cortex.js +17 -14
  62. package/dist/memory/conversation-display-backfill.d.ts +25 -0
  63. package/dist/memory/conversation-display-backfill.js +97 -0
  64. package/dist/memory/conversation-display-recorder.d.ts +17 -0
  65. package/dist/memory/conversation-display-recorder.js +156 -0
  66. package/dist/memory/conversation-display-replay.d.ts +19 -0
  67. package/dist/memory/conversation-display-replay.js +39 -0
  68. package/dist/memory/conversation-display-storage.d.ts +86 -0
  69. package/dist/memory/conversation-display-storage.js +168 -0
  70. package/dist/memory/reconstruct-cards.d.ts +7 -1
  71. package/dist/memory/reconstruct-cards.js +5 -1
  72. package/dist/memory/thread-history.d.ts +46 -11
  73. package/dist/memory/thread-history.js +55 -13
  74. package/dist/memory/thread-store.d.ts +142 -25
  75. package/dist/memory/thread-store.js +228 -40
  76. package/dist/prompts/literature-reviewer.d.ts +1 -1
  77. package/dist/prompts/literature-reviewer.js +2 -0
  78. package/dist/runtime/assemble.d.ts +50 -4
  79. package/dist/runtime/assemble.js +47 -3
  80. package/dist/runtime/boot.d.ts +8 -2
  81. package/dist/runtime/boot.js +20 -2
  82. package/dist/state/init.js +50 -1
  83. package/dist/state/schema.d.ts +2 -2
  84. package/dist/tools/bio/gene-preclinical-profile.d.ts +1 -1
  85. package/dist/tools/bio/keys.d.ts +1 -0
  86. package/dist/tools/bio/pubmed.js +4 -4
  87. package/dist/tools/lib/ncbi-utils.d.ts +3 -58
  88. package/dist/tools/lib/ncbi-utils.js +2 -286
  89. package/dist/tools/lib/pubmed-client.d.ts +5 -12
  90. package/dist/tools/lib/pubmed-client.js +20 -79
  91. package/dist/tools/research/generate-analogy-report.js +2 -2
  92. package/dist/tools/research/index.d.ts +1 -0
  93. package/dist/tools/research/index.js +1 -0
  94. package/dist/tools/research/inspect-run.d.ts +1 -1
  95. package/dist/tools/research/literature-reviewer.d.ts +3 -0
  96. package/dist/tools/research/literature-reviewer.js +2 -0
  97. package/dist/tools/research/resolve-citation.d.ts +3 -0
  98. package/dist/tools/research/resolve-citation.js +15 -0
  99. package/dist/tools/research/search-arxiv.d.ts +3 -19
  100. package/dist/tools/research/search-arxiv.js +9 -105
  101. package/dist/tools/research/search-semantic-scholar.d.ts +8 -33
  102. package/dist/tools/research/search-semantic-scholar.js +29 -88
  103. package/dist/tools/sandbox/list-available-refs.js +1 -2
  104. package/dist/workflows/execute-analysis.d.ts +3 -0
  105. package/dist/workflows/execute-analysis.js +1 -0
  106. package/dist/workflows/sandbox-step.d.ts +5 -0
  107. package/dist/workflows/sandbox-step.js +1 -0
  108. package/dist/workflows/target-assessment/phase4-assemble.d.ts +2 -2
  109. package/dist/workflows/target-assessment/schemas.d.ts +2 -2
  110. package/dist/workflows/target-assessment/steps/phase2-aggregate.d.ts +1 -1
  111. package/dist/workflows/target-assessment/steps/phase3-aggregate.d.ts +1 -1
  112. package/package.json +1 -1
@@ -20,17 +20,36 @@
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  * is the atomic unit; `appendTurn` writes one atomically and `loadRecent`
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  * rounds the budget walk to turn boundaries.
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  */
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+ import { randomUUID } from "node:crypto";
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  import { metrics } from "@opentelemetry/api";
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  import { ResultAsync, ok, okAsync } from "neverthrow";
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  import { stripNulCharacters } from "../input-sanitization.js";
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  import { tryMutation, tryQuery, withTransaction } from "../lib/db-result.js";
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  import { hasReportedUsage } from "../loop/metrics.js";
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  import { countTokens } from "./count-tokens.js";
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- import { HARNESS_PROVIDER_NAMESPACE, SYNTHETIC_MESSAGE_KEY, envelopeMessage, isSyntheticUserMessage, parseStoredMessageEnvelope, } from "./ai-sdk-message-storage.js";
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+ import { HARNESS_PROVIDER_NAMESPACE, SYNTHETIC_MESSAGE_KEY, envelopeMessage, isSyntheticUserMessage, parseStoredMessageEnvelope, syntheticRecordMessage, } from "./ai-sdk-message-storage.js";
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+ import { envelopeDisplayMessages, parseStoredDisplayEnvelope } from "./conversation-display-storage.js";
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  /** A resolved `ok(undefined)` ResultAsync — the empty/seed transaction step. */
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  function okVoid() {
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  return new ResultAsync(Promise.resolve(ok(undefined)));
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  }
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+ /**
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+ * The append a host uses to record out-of-band work in a thread — an analysis
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+ * run's outcome, typically.
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+ *
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+ * Both projections are built here because a record has no live turn behind it:
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+ * no recorder observed it, so nothing else would produce its display projection,
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+ * and a record appended without one would be stored, read by the model, and
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+ * never shown. The harness owns the record-to-`system` mapping for the same
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+ * reason it owns the marker — a host that hand-assembled either could produce a
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+ * message the turn-boundary predicates fail to recognise.
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+ */
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+ export function conversationRecordTurn(text) {
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+ return {
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+ modelMessages: [syntheticRecordMessage(text)],
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+ displayMessages: [{ id: randomUUID(), role: "system", parts: [{ type: "text", text, state: "done" }] }],
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+ };
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+ }
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  /**
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  * A turn starts on a `user` message that a human actually sent. Two kinds of
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  * message carry the `user` role without opening a turn, and both are excluded
@@ -156,9 +175,16 @@ export const EVICTION_BLOCK_TURNS = 4;
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  * provisioned by the project's state-init DDL.
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  */
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  export function createThreadHistory(pool) {
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- function appendTurn(threadId, messages, turnUsage) {
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+ function appendTurn(threadId, turn) {
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+ const { modelMessages: messages, displayMessages, turnUsage } = turn;
160
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  if (messages.length === 0)
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  return okVoid();
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+ // The display projection rides the append's FIRST row, so one SELECT of a
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+ // thread's rows yields every envelope in order with no join and no grouping.
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+ // Whichever row that is — a genuine user message opening a turn, or the lone
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+ // record row of an out-of-band append — is the row a tail retraction removes
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+ // the envelope with, because it is the row the projection describes.
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+ const displayEnvelope = displayMessages.length > 0 ? JSON.stringify(envelopeDisplayMessages(displayMessages)) : null;
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  // A rollup that reports no quantity is stored as absent, not as a rollup of
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  // absences, so "no figure" has exactly one representation in storage.
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  // `hasReportedUsage` is the loop's own predicate for the same question,
@@ -185,14 +211,23 @@ export function createThreadHistory(pool) {
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  // re-throws it to force ROLLBACK (a returned `err` that does not
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  // reach `withTransaction` would COMMIT silently).
187
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  messages.reduce((chain, message, i) => chain.andThen(() => tryMutation("thread-history.appendTurn.insert", () => client.query(
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- // `message_envelope::json`, never `::jsonb`, and `reported_usage::jsonb`,
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- // never `::json` — see the column comments in the state-init DDL.
190
- `INSERT INTO messages (thread_id, seq, message_envelope, tokens, reported_usage)
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- VALUES ($1, $2, $3::json, $4, $5::jsonb)
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+ // `message_envelope::json`, never `::jsonb`; `display_envelope` and
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+ // `reported_usage::jsonb`, never `::json` — see the column comments
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+ // in the state-init DDL.
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+ `INSERT INTO messages (thread_id, seq, message_envelope, display_envelope, tokens, reported_usage)
218
+ VALUES ($1, $2, $3::json, $4::jsonb, $5, $6::jsonb)
192
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  ON CONFLICT (thread_id, seq) DO UPDATE
193
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  SET message_envelope = EXCLUDED.message_envelope,
221
+ display_envelope = EXCLUDED.display_envelope,
194
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  tokens = EXCLUDED.tokens,
195
- reported_usage = EXCLUDED.reported_usage`, [threadId, startSeq + i, serializeEnvelope(message), countTokens(message.content), i === rollupRow ? rollup : null])).map(() => undefined)), okVoid()))
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+ reported_usage = EXCLUDED.reported_usage`, [
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+ threadId,
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+ startSeq + i,
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+ serializeEnvelope(message),
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+ i === 0 ? displayEnvelope : null,
228
+ countTokens(message.content),
229
+ i === rollupRow ? rollup : null,
230
+ ])).map(() => undefined)), okVoid()))
196
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  .andThen(() =>
197
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  // Thread listings sort on `cortex_analysis_threads.updated_at`, and
198
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  // the only other writer of it is the title update — so without this
@@ -311,15 +346,22 @@ export function createThreadHistory(pool) {
311
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  // `seq::text AS seq` output alias (Postgres resolves an unqualified
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  // ORDER BY name to the output column), sorting the bigint as text:
313
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  // "10" before "2". The qualified name forces the bigint column.
314
- `SELECT seq::text AS seq, message_envelope, reported_usage
349
+ `SELECT seq::text AS seq, message_envelope, display_envelope, reported_usage
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  FROM messages WHERE thread_id = $1
316
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  ORDER BY messages.seq ASC`, [threadId]);
317
- const stored = rows.map((r) => {
352
+ // Spread rather than `usage: r.reported_usage ?? undefined`, so a row with
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+ // no rollup carries no `usage` KEY at all — absent, not present-and-undefined.
354
+ const stored = await Promise.all(rows.map(async (r) => {
318
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  const envelope = parseStoredMessageEnvelope(r.message_envelope, `${threadId}/${r.seq}`);
319
- // Spread rather than `usage: r.reported_usage ?? undefined`, so a row with
320
- // no rollup carries no `usage` KEY at all — absent, not present-and-undefined.
321
- return { seq: Number(r.seq), envelope, message: envelope.message, ...(r.reported_usage === null ? {} : { usage: r.reported_usage }) };
322
- });
356
+ const displayEnvelope = r.display_envelope == null ? undefined : await parseStoredDisplayEnvelope(r.display_envelope, `${threadId}/${r.seq}/display`);
357
+ return {
358
+ seq: Number(r.seq),
359
+ envelope,
360
+ message: envelope.message,
361
+ ...(displayEnvelope ? { displayEnvelope } : {}),
362
+ ...(r.reported_usage === null ? {} : { usage: r.reported_usage }),
363
+ };
364
+ }));
323
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  const turns = groupTurns(stored, (row) => isGenuineUserStart(row.message));
324
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  const total = turns.length;
325
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  const offset = safePage * safePerPage;
@@ -10,20 +10,24 @@
10
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  * the vocabulary is conversation-shaped on purpose — reaching for it inside
11
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  * a workflow step feels immediately wrong.
12
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  *
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- * Three lifecycle verbs with distinct guarantees. `archiveThread` is
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- * recoverable: it stamps `deleted_at`, and because `getThread` and the default
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+ * A thread may name another as its parent, so the rows under one analysis form
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+ * a forest rather than a flat list. The three lifecycle verbs each answer that
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+ * edge differently, and the differences are the substance of this module.
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+ *
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+ * `archiveThread` is recoverable: it stamps `deleted_at` on the named thread
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+ * and on every descendant, and because `getThread` and the default
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  * `listThreads` filter `deleted_at IS NULL` an archived thread is
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  * indistinguishable from an absent one while its row and every one of its
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- * `messages` rows stay in storage. `unarchiveThread` clears the stamp and the
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- * thread reads as it did; a listing widened with `includeArchived` is the only
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- * way to obtain the id it takes, so the recovery is reachable by a host that
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- * holds no thread ids it obtained elsewhere.
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+ * `messages` rows stay in storage. `unarchiveThread` clears the stamp on ONE
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+ * row and the thread reads as it did; a listing widened with `includeArchived`
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+ * is the only way to obtain the id it takes, so the recovery is reachable by a
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+ * host that holds no thread ids it obtained elsewhere.
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  * `purgeThread` is not recoverable: it removes the `messages` rows and the
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- * metadata row in one transaction, so a failure partway leaves both — never a
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- * thread stripped of its transcript, nor a transcript with nothing naming it.
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- * It is the thread-scoped member of this package's reclamation vocabulary —
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- * `purgeAnalysis` reclaims an analysis's whole persisted footprint,
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- * `purgeThread` one thread's.
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+ * metadata rows of the whole subtree in one transaction, so a failure partway
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+ * leaves both — never a thread stripped of its transcript, nor a transcript
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+ * with nothing naming it. It is the thread-scoped member of this package's
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+ * reclamation vocabulary — `purgeAnalysis` reclaims an analysis's whole
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+ * persisted footprint, `purgeThread` one subtree's.
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  *
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  * A purge creates no orphan of its own, but it is NOT serialized against a
29
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  * concurrent `appendTurn`: `messages` carries no foreign key to
@@ -31,17 +35,51 @@
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  * metadata row. A turn committing after the purge therefore persists messages
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  * under a `thread_id` that no longer resolves to an analysis, leaving them
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  * unreachable by any later thread- or analysis-scoped reclamation. Stop writes
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- * to a thread — unbind it from any live conversation — before purging it; this
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- * store cannot observe a host's in-flight turns, so it does not enforce that.
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+ * to every thread in the subtree — unbind each from any live conversation —
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+ * before purging its root; this store cannot observe a host's in-flight turns,
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+ * so it does not enforce that.
36
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  */
37
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  import { type ResultAsync } from "neverthrow";
38
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  import type { Pool } from "pg";
39
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  import { type DbError } from "../lib/db-result.js";
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+ /**
46
+ * The kind of session a thread holds. `conversation` is the analysis
47
+ * conversation the product has always had; `report` is a report session spawned
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+ * from one.
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+ *
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+ * The set is closed rather than free-form because a thread's type is what
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+ * selects the agent that runs it. That resolution is a separate capability, and
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+ * it can only be exhaustive over a membership something can enumerate — a
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+ * free-form column pushes an unmatched value into a fallback no reader has the
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+ * list to write.
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+ *
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+ * The array is the single declaration and the union is derived from it, so the
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+ * run-time check `createThread` needs — for a value that reached the store from
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+ * outside the compiler's reach — cannot drift from the type callers program
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+ * against.
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+ */
61
+ declare const THREAD_TYPES: readonly ["conversation", "report"];
62
+ export type ThreadType = (typeof THREAD_TYPES)[number];
40
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  /** One conversation thread's metadata, as returned by the store. */
41
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  export interface Thread {
42
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  readonly threadId: string;
43
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  readonly analysisId: string;
44
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  readonly title: string | null;
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+ /** Which kind of session this row holds. A thread created without one is a `conversation`. */
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+ readonly threadType: ThreadType;
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+ /** The thread this one was spawned from — `null` on a thread that stands on its own. */
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+ readonly parentThreadId: string | null;
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+ /**
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+ * The parent's `messages.seq` at the moment of the spawn: the frozen point
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+ * in the parent's transcript this thread was built on. `null` exactly when
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+ * `parentThreadId` is — half the pair names nothing a consumer can resolve.
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+ *
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+ * It records the spawn point, not a promise that the prefix still reads the
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+ * same: `retractLastTurn` can cut the parent's tail behind an anchor, so a
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+ * reader must treat an anchor past the parent's current end as a normal
80
+ * state rather than a corruption.
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+ */
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+ readonly parentSeq: number | null;
45
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  readonly createdAt: Date;
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  readonly updatedAt: Date;
47
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  /**
@@ -56,7 +94,51 @@ export interface CreateThreadInput {
56
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  readonly threadId: string;
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  readonly analysisId: string;
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  readonly title?: string | null;
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+ /** Omitted is `conversation` — what a thread is when nothing says otherwise. */
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+ readonly type?: ThreadType;
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+ /**
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+ * The thread this one is spawned from. It must belong to the same analysis
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+ * as the child; whether it exists at all is the foreign key's verdict, not
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+ * this store's.
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+ */
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+ readonly parentThreadId?: string;
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+ /**
106
+ * The parent's `messages.seq` at the spawn. Supply it with `parentThreadId`
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+ * or neither: the two are one fact — which transcript, and how much of it —
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+ * and either half alone describes no place.
109
+ */
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+ readonly parentSeq?: number;
59
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  }
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+ /**
113
+ * A create the store refuses on its own, before any row is written. Distinct
114
+ * from `DbError`: nothing failed at the driver — the request described a thread
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+ * the store will not write, and each variant carries the identifiers that say
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+ * which values disagreed.
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+ *
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+ * Only the rules the store enforces itself live here. A `parentThreadId` naming
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+ * no row is not one of them: the foreign key refuses that insert and
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+ * `tryMutation` classifies the refusal as the `constraint_violation` variant of
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+ * `DbError`.
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+ */
123
+ export type ThreadInputError = {
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+ readonly type: "parent_analysis_mismatch";
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+ readonly op: string;
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+ readonly threadId: string;
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+ readonly analysisId: string;
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+ readonly parentThreadId: string;
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+ readonly parentAnalysisId: string;
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+ } | {
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+ readonly type: "parent_anchor_unpaired";
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+ readonly op: string;
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+ readonly threadId: string;
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+ readonly parentThreadId: string | null;
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+ readonly parentSeq: number | null;
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+ } | {
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+ readonly type: "unknown_thread_type";
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+ readonly op: string;
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+ readonly threadId: string;
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+ readonly threadType: string;
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+ };
60
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  export interface ListThreadsInput {
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  readonly analysisId: string;
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  readonly page?: number;
@@ -68,6 +150,20 @@ export interface ListThreadsInput {
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  * widened back out of.
69
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  */
70
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  readonly includeArchived?: boolean;
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+ /**
154
+ * Narrow to one kind of session, exact match. Omitting it narrows NOTHING —
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+ * a caller that supplies no filter receives every type, which is what a
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+ * session picker wants: a user browsing an analysis expects to reach a
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+ * report session directly.
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+ *
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+ * That is the opposite polarity to `includeArchived`, which widens a listing
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+ * that is narrow by default, and the difference is deliberate. An archived
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+ * thread is hidden state — showing it takes an explicit ask. A report
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+ * session is not hidden state, so nothing has to ask for it.
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+ */
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+ readonly type?: ThreadType;
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+ /** Narrow to one thread's direct children, exact match. Same polarity as `type`: omitting it narrows nothing. */
166
+ readonly parentThreadId?: string;
71
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  }
72
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  export interface ThreadPage {
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  readonly threads: Thread[];
@@ -80,9 +176,16 @@ export interface ThreadStore {
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  /**
81
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  * Create a thread row. Idempotent on `thread_id` — a second create for an
82
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  * existing id is a no-op that preserves the existing row (including its
83
- * `created_at`). Returns the live row.
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+ * `created_at`) and reads none of the supplied type, parent, or anchor. A
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+ * caller that needs those persisted compares them against the returned row.
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+ * Returns the live row.
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+ *
183
+ * Refused with a `ThreadInputError`, no row written: a parent belonging to
184
+ * another analysis, a parent supplied without its anchor or an anchor
185
+ * without its parent, and a type outside the closed set. A parent naming no
186
+ * row is the foreign key's refusal and arrives as a `DbError`.
84
187
  */
85
- createThread(input: CreateThreadInput): ResultAsync<Thread, DbError>;
188
+ createThread(input: CreateThreadInput): ResultAsync<Thread, DbError | ThreadInputError>;
86
189
  /** The live thread by id, or `null` if absent or archived. */
87
190
  getThread(threadId: string): ResultAsync<Thread | null, DbError>;
88
191
  /**
@@ -91,26 +194,39 @@ export interface ThreadStore {
91
194
  */
92
195
  updateTitle(threadId: string, title: string): ResultAsync<Thread | null, DbError>;
93
196
  /**
94
- * Soft-delete: stamp `deleted_at` so the thread leaves `getThread` and
95
- * `listThreads`. The row and every one of its messages remain, and an
96
- * already-archived thread keeps the stamp it got the first time.
197
+ * Soft-delete the subtree: stamp `deleted_at` on the named thread and on
198
+ * every descendant reachable through `parent_thread_id`, at any depth, so a
199
+ * hidden thread never leaves a visible child behind. Every row and every one
200
+ * of their messages remain, and any thread in the subtree that was already
201
+ * archived keeps the stamp it got the first time.
97
202
  */
98
203
  archiveThread(threadId: string): ResultAsync<void, DbError>;
99
204
  /**
100
- * Clear `deleted_at`, returning the thread and its messages to view exactly
101
- * as they read before the archive. No-op on a live or absent thread.
205
+ * Clear `deleted_at` on the named thread ALONE, returning it and its
206
+ * messages to view exactly as they read before the archive; every descendant
207
+ * is left as it was found. No-op on a live or absent thread.
208
+ *
209
+ * The asymmetry against `archiveThread` is what keeps the schema honest. A
210
+ * symmetric cascade would restore a child the user had archived on its own
211
+ * beforehand, so a row would have to record whether a cascade or a
212
+ * deliberate action set its tombstone — a fourth column carrying nothing
213
+ * else. With the asymmetry no row needs that distinction, and every archived
214
+ * thread is recovered the same way: by naming it, which a listing widened
215
+ * with `includeArchived` supplies.
102
216
  */
103
217
  unarchiveThread(threadId: string): ResultAsync<void, DbError>;
104
218
  /**
105
- * Reclaim the thread's whole footprint: its `messages` rows and its
106
- * `cortex_analysis_threads` row, removed together in one transaction.
107
- * Unrecoverable — nothing of the thread survives, and no tombstone marks
108
- * that it existed. A `thread_id` with no row succeeds as a no-op.
219
+ * Reclaim the subtree's whole footprint: the named thread, every descendant
220
+ * reachable through `parent_thread_id` at any depth, and the `messages` rows
221
+ * of every one of them, removed together in one transaction. Unrecoverable —
222
+ * nothing survives, and no tombstone marks that any of it existed. A
223
+ * `thread_id` with no row succeeds as a no-op.
109
224
  */
110
225
  purgeThread(threadId: string): ResultAsync<void, DbError>;
111
226
  /**
112
227
  * Threads for one analysis, newest-updated first, paginated. Live threads
113
- * only unless `includeArchived` widens the set; `total` and `hasMore`
228
+ * only unless `includeArchived` widens the set, and every type under every
229
+ * parent unless `type` / `parentThreadId` narrow it; `total` and `hasMore`
114
230
  * always describe whichever set the page was drawn from.
115
231
  */
116
232
  listThreads(input: ListThreadsInput): ResultAsync<ThreadPage, DbError>;
@@ -121,3 +237,4 @@ export interface ThreadStore {
121
237
  * `cortex_analysis_threads` table is provisioned by the state-init DDL.
122
238
  */
123
239
  export declare function createThreadStore(pool: Pool): ThreadStore;
240
+ export {};