@inerrata-corporation/errata 2.0.2-dev.85 → 2.0.2-dev.866

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
package/pass-worker.mjs CHANGED
@@ -144,7 +144,14 @@ var init_castalia = __esm({
144
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  "SOLVED_BY",
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  "MITIGATES",
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  "REPORTED_FAILURE",
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- "CONTRADICTS"
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+ "CONTRADICTS",
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+ // Motif twin-faces (KN-twin-faces): failure-face motif → remedy-face motif
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+ // across layers (AntiPattern/Weakness ↔ Technique/Pattern). Same
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+ // problem→fix direction as FIXED_BY/SOLVED_BY. Minted by the nightly LLM
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+ // twin-face pass — these are the near-identical cross-layer pairs the
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+ // polarity gate (finding 5) correctly refuses to FUSE; the link carries
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+ // what fusion can't.
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+ "REMEDIED_BY"
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  ];
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  CONCEPTUAL_EDGES = [
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  "INSTANCE_OF",
@@ -259,6 +266,10 @@ var init_castalia = __esm({
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  // git topology, not signal-flow
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  "AUTHORED_BY",
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  // git authorship, not signal-flow
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+ "PRODUCED",
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+ // edit-episode provenance (Episode→symbol), not signal-flow — the family
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+ // above was excluded together but this member slipped the net (LC-produced-pagerank);
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+ // at 43% of all live edges it was the largest single edge population flowing rank
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  "CONTRIBUTED",
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  // agent attribution (Agent → knowledge), not signal-flow
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  "SUPERSEDES",
@@ -274,6 +285,10 @@ var init_castalia = __esm({
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  CAUSED_BY: 3,
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  FIXED_BY: 3,
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  SOLVED_BY: 3,
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+ // Twin-face link (failure motif → remedy motif, KN-twin-faces) — causal-grade
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+ // but a notch below witnessed FIXED_BY/SOLVED_BY: the pairing is an LLM
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+ // judgment over descriptions, not an agent-witnessed resolution.
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+ REMEDIED_BY: 2.5,
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  MANIFESTS_AS: 2,
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  ESCALATES_TO: 1.5,
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  AFFECTS: 1.2,
@@ -447,13 +462,18 @@ function resolveCanonical(label) {
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  function resolveCanonicalId(label) {
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  return resolveCanonical(label)?.id;
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  }
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+ function resolveUnambiguousCanonicalId(label) {
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+ const key = label.trim().toLowerCase();
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+ if (AMBIGUOUS_ALIASES.has(key)) return void 0;
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+ return resolveCanonicalId(key);
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+ }
450
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  function aliasesLongestFirst() {
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  const out2 = [];
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  for (const e of REGISTRY) for (const a of e.aliases) out2.push({ alias: a.toLowerCase(), entity: e });
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  out2.sort((x, y) => y.alias.length - x.alias.length);
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  return out2;
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  }
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- var REGISTRY, BY_ALIAS;
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+ var REGISTRY, AMBIGUOUS_ALIASES, BY_ALIAS;
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477
  var init_taxonomy = __esm({
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  "../../packages/shared/src/nlp/taxonomy.ts"() {
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  "use strict";
@@ -502,6 +522,13 @@ var init_taxonomy = __esm({
502
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  { id: "concept:retry", name: "retry", category: "concept", aliases: ["retry"] },
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  { id: "concept:migration", name: "migration", category: "concept", aliases: ["migration"] }
504
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  ];
525
+ AMBIGUOUS_ALIASES = /* @__PURE__ */ new Set([
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+ "node",
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+ "go",
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+ "pool",
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+ "spring",
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+ "ws"
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+ ]);
505
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  BY_ALIAS = /* @__PURE__ */ new Map();
506
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  for (const e of REGISTRY) {
507
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  for (const a of e.aliases) {
@@ -563,7 +590,7 @@ function lemma(token) {
563
590
  }
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  return token;
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  }
566
- function conceptTokens(text) {
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+ function tokenize(text, resolve) {
567
594
  const matches = text.normalize("NFC").toLowerCase().match(TOKEN_RE) ?? [];
568
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  const out2 = /* @__PURE__ */ new Set();
569
596
  for (const raw of matches) {
@@ -573,11 +600,14 @@ function conceptTokens(text) {
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  out2.add(token);
574
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  continue;
575
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  }
576
- const canonical = resolveCanonicalId(token);
603
+ const canonical = resolve(token);
577
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  out2.add(canonical ?? lemma(token));
578
605
  }
579
606
  return [...out2].sort();
580
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  }
608
+ function retrievalTokens(text) {
609
+ return tokenize(text, resolveUnambiguousCanonicalId);
610
+ }
581
611
  var STOPWORDS, NEGATION_TOKENS, TOKEN_RE;
582
612
  var init_concept_bag = __esm({
583
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  "../../packages/shared/src/nlp/concept-bag.ts"() {
@@ -15058,7 +15088,12 @@ var init_edge_rules = __esm({
15058
15088
  // ── Taxonomy (Track 4 Stream C: MITRE CWE `ChildOf` → `Weakness —IS_A→ Weakness`) ──
15059
15089
  IS_A: { from: ["Weakness"], to: ["Weakness"] },
15060
15090
  // ── Conceptual (v1 taxonomy.ts: instance → motif/pattern reference) ──
15061
- INSTANCE_OF: { to: ["Pattern", "Weakness", "Technique"] },
15091
+ // `AntiPattern` joined the target set 2026-08-02: it is one of the three motif
15092
+ // kinds (generalizer motifs.ts `layerOf`: pattern | technique | antipattern) and
15093
+ // the SUPPRESSED-close path mints `Problem ─INSTANCE_OF→ AntiPattern` as the
15094
+ // negative-knowledge binding ("silenced, not solved") — the original three-label
15095
+ // rule predates AntiPattern joining the motif layer and silently ate that edge.
15096
+ INSTANCE_OF: { to: ["Pattern", "AntiPattern", "Weakness", "Technique"] },
15062
15097
  IMPLEMENTS: { from: ["Solution", "Language", "Component"], to: ["Pattern", "Technique"] },
15063
15098
  MATCHES: { to: ["Pattern"] },
15064
15099
  // ── Artifact evidence (v1 taxonomy.ts artifact rows) ──
@@ -15159,6 +15194,23 @@ var init_wire = __esm({
15159
15194
  /** Canonical human-readable description (no raw paths — daemon scrubs; server rechecks). */
15160
15195
  description: external_exports.string().min(1).max(4e3),
15161
15196
  attrs: external_exports.record(external_exports.string(), external_exports.unknown()).default({}),
15197
+ /** One-way origin key of the SESSION that minted this node (`ws_…`, a
15198
+ * truncated digest — never the raw session id). Stamped onto the created
15199
+ * node as `authoringSession`, which is the independence unit for the
15200
+ * evidence channels: the session that authored a claim may not corroborate
15201
+ * or refute it, while a DIFFERENT session on the same checkout may (alyssa,
15202
+ * 2026-07-31 — the workspace key made every witness on a single-checkout
15203
+ * deployment a self-corroboration). Optional + additive: absent leaves the
15204
+ * gate fail-open for that node, exactly today's behaviour. */
15205
+ originSession: external_exports.string().min(3).max(64).optional(),
15206
+ /** Epoch ms of the ORIGINATING local node's creation — when the knowledge was
15207
+ * actually captured, as opposed to when its public twin reached the cloud.
15208
+ * Stored as `observedAt`; the network board's chronological view orders on
15209
+ * it. Without this the wire carried NO timestamp at all, so a node captured
15210
+ * days ago surfaced as "new" the moment it was generalized and published —
15211
+ * the board showed ingest order wearing a chronology's clothes. Optional +
15212
+ * additive: absent keeps ingest-time ordering for that node. */
15213
+ originCreatedAtMs: external_exports.number().int().positive().optional(),
15162
15214
  extractionSource: external_exports.enum(INGEST_EXTRACTION_SOURCES),
15163
15215
  validationSource: external_exports.enum(VALIDATION_SOURCES).optional(),
15164
15216
  /** Org-membrane (M2): the daemon's anchor tag — it owns the lockfile, so it
@@ -15331,6 +15383,51 @@ var init_review = __esm({
15331
15383
  }
15332
15384
  });
15333
15385
 
15386
+ // ../../packages/local-shared/src/anchorable.ts
15387
+ function anchorableExtensionAlternation() {
15388
+ return BY_LENGTH.map((e) => e.slice(1).replace(/[+.]/g, (c) => `\\${c}`)).join("|");
15389
+ }
15390
+ var ANCHORABLE_EXTENSIONS, BY_LENGTH;
15391
+ var init_anchorable = __esm({
15392
+ "../../packages/local-shared/src/anchorable.ts"() {
15393
+ "use strict";
15394
+ ANCHORABLE_EXTENSIONS = /* @__PURE__ */ new Set([
15395
+ // typescript provider
15396
+ ".ts",
15397
+ ".tsx",
15398
+ ".js",
15399
+ ".jsx",
15400
+ ".mjs",
15401
+ ".cjs",
15402
+ // python / go / rust / ruby / csharp providers
15403
+ ".py",
15404
+ ".go",
15405
+ ".rs",
15406
+ ".rb",
15407
+ ".cs",
15408
+ // cpp provider — every variant it parses, not just the three that were listed
15409
+ ".c",
15410
+ ".h",
15411
+ ".cpp",
15412
+ ".cc",
15413
+ ".cxx",
15414
+ ".c++",
15415
+ ".hpp",
15416
+ ".hh",
15417
+ ".hxx",
15418
+ ".h++",
15419
+ // CUDA — the cpp provider parses these too. Missed when this list was first
15420
+ // transcribed by hand; the parity test caught them on its very first run,
15421
+ // which is the argument for the test existing.
15422
+ ".cu",
15423
+ ".cuh",
15424
+ // no provider yet; the grammar ships. Inert, not wrong — see above.
15425
+ ".java"
15426
+ ]);
15427
+ BY_LENGTH = [...ANCHORABLE_EXTENSIONS].sort((a, b) => b.length - a.length);
15428
+ }
15429
+ });
15430
+
15334
15431
  // ../../packages/local-shared/src/sqlite-adapter.ts
15335
15432
  function openDatabase(path) {
15336
15433
  const db = new DatabaseSync(path);
@@ -15343,6 +15440,7 @@ function openDatabase(path) {
15343
15440
  db.exec("PRAGMA journal_mode = WAL");
15344
15441
  db.exec("PRAGMA synchronous = NORMAL");
15345
15442
  db.exec("PRAGMA busy_timeout = 5000");
15443
+ db.exec("PRAGMA journal_size_limit = 67108864");
15346
15444
  } catch {
15347
15445
  }
15348
15446
  }
@@ -15378,7 +15476,7 @@ function openDatabase(path) {
15378
15476
  return db.prepare(`PRAGMA ${key}`).get();
15379
15477
  },
15380
15478
  transaction(fn) {
15381
- db.exec("BEGIN");
15479
+ db.exec("BEGIN IMMEDIATE");
15382
15480
  try {
15383
15481
  const r = fn();
15384
15482
  db.exec("COMMIT");
@@ -15432,6 +15530,7 @@ var init_src2 = __esm({
15432
15530
  init_profile();
15433
15531
  init_daemon_wire();
15434
15532
  init_review();
15533
+ init_anchorable();
15435
15534
  init_sqlite_adapter();
15436
15535
  }
15437
15536
  });
@@ -15454,7 +15553,7 @@ function popcount(x) {
15454
15553
  }
15455
15554
  return c;
15456
15555
  }
15457
- function tokenize(text) {
15556
+ function tokenize2(text) {
15458
15557
  return text.match(/[A-Za-z_$][A-Za-z0-9_$]*|\d+|[^\s\w]/g) ?? [];
15459
15558
  }
15460
15559
  function shingle(tokens, n = SHINGLE_N) {
@@ -15483,7 +15582,7 @@ function simhashFeatures(features) {
15483
15582
  return out2;
15484
15583
  }
15485
15584
  function simhash(text) {
15486
- return simhashFeatures(shingle(tokenize(text)));
15585
+ return simhashFeatures(shingle(tokenize2(text)));
15487
15586
  }
15488
15587
  function hammingDistance(a, b) {
15489
15588
  return popcount((a ^ b) & MASK64);
@@ -15791,6 +15890,7 @@ async function incrementalReindex(store2, rootPath, workspaceId, changedAbsPaths
15791
15890
  };
15792
15891
  }
15793
15892
  const fileHashes = /* @__PURE__ */ new Map();
15893
+ const contentMovedPaths = /* @__PURE__ */ new Set();
15794
15894
  for (const rel of [...changedRelPaths]) {
15795
15895
  let h;
15796
15896
  try {
@@ -15803,6 +15903,8 @@ async function incrementalReindex(store2, rootPath, workspaceId, changedAbsPaths
15803
15903
  if (fnode && fnode.attrs["contentHash"] === h && !fileHasStrandedSymbol(store2, fnode.id)) {
15804
15904
  store2.updateNode(fnode.id, { lastUpdatedAt: t });
15805
15905
  changedRelPaths.delete(rel);
15906
+ } else if (!fnode || fnode.attrs["contentHash"] !== h) {
15907
+ contentMovedPaths.add(rel);
15806
15908
  }
15807
15909
  }
15808
15910
  if (changedRelPaths.size === 0) {
@@ -15937,6 +16039,7 @@ async function incrementalReindex(store2, rootPath, workspaceId, changedAbsPaths
15937
16039
  changedRelPaths
15938
16040
  });
15939
16041
  store2.transaction(() => {
16042
+ store2.reviveReobserved([...changedRelPaths], workspaceId, t);
15940
16043
  const versionedAndFile = /* @__PURE__ */ new Set([...VERSIONED_LABELS, "File"]);
15941
16044
  const ownedLive = [];
15942
16045
  for (const n of store2.nodesByRelPath([...changedRelPaths])) {
@@ -16045,7 +16148,14 @@ async function incrementalReindex(store2, rootPath, workspaceId, changedAbsPaths
16045
16148
  const h = fileHashes.get(rel);
16046
16149
  if (!h) continue;
16047
16150
  const fnode = store2.getNode(fileNodeId(workspaceId, rel));
16048
- if (fnode) store2.updateNode(fnode.id, { attrs: { ...fnode.attrs, contentHash: h } });
16151
+ if (!fnode) continue;
16152
+ store2.updateNode(fnode.id, {
16153
+ attrs: {
16154
+ ...fnode.attrs,
16155
+ contentHash: h,
16156
+ ...contentMovedPaths.has(rel) ? { contentChangedAt: t } : {}
16157
+ }
16158
+ });
16049
16159
  }
16050
16160
  return {
16051
16161
  filesReindexed: changedRelPaths.size,
@@ -16616,7 +16726,7 @@ async function scan(root, current, ignores, providers, out2) {
16616
16726
  }
16617
16727
  }
16618
16728
  }
16619
- function gitListFiles(root, ignores, providers) {
16729
+ function gitListRelPaths(root, ignores) {
16620
16730
  let stdout;
16621
16731
  try {
16622
16732
  stdout = execFileSync(
@@ -16639,6 +16749,15 @@ function gitListFiles(root, ignores, providers) {
16639
16749
  if (segs.some((s) => ignores.has(s) || s.startsWith(".") && s.length > 1)) {
16640
16750
  continue;
16641
16751
  }
16752
+ out2.push(rel);
16753
+ }
16754
+ return out2;
16755
+ }
16756
+ function gitListFiles(root, ignores, providers) {
16757
+ const rels = gitListRelPaths(root, ignores);
16758
+ if (rels === null) return null;
16759
+ const out2 = [];
16760
+ for (const rel of rels) {
16642
16761
  const abs = join(root, rel);
16643
16762
  let size;
16644
16763
  try {
@@ -23978,6 +24097,7 @@ var init_csharp_treesitter = __esm({
23978
24097
  // ../../packages/indexer/src/index.ts
23979
24098
  var src_exports = {};
23980
24099
  __export(src_exports, {
24100
+ DEFAULT_IGNORES: () => DEFAULT_IGNORES,
23981
24101
  DRIFT_FORK_RATIO: () => DRIFT_FORK_RATIO,
23982
24102
  TreeSitterCSharpProvider: () => TreeSitterCSharpProvider,
23983
24103
  TreeSitterCppProvider: () => TreeSitterCppProvider,
@@ -23994,6 +24114,7 @@ __export(src_exports, {
23994
24114
  findInnermostScope: () => findInnermostScope,
23995
24115
  folderNodeId: () => folderNodeId,
23996
24116
  fromHex: () => fromHex,
24117
+ gitListRelPaths: () => gitListRelPaths,
23997
24118
  hammingDistance: () => hammingDistance,
23998
24119
  hasForkedDrift: () => hasForkedDrift,
23999
24120
  incrementalReindex: () => incrementalReindex,
@@ -24006,7 +24127,7 @@ __export(src_exports, {
24006
24127
  simhashFeatures: () => simhashFeatures,
24007
24128
  symbolNodeId: () => symbolNodeId,
24008
24129
  toHex: () => toHex,
24009
- tokenize: () => tokenize
24130
+ tokenize: () => tokenize2
24010
24131
  });
24011
24132
  function defaultProviders() {
24012
24133
  if (providersCache) return providersCache;
@@ -24059,9 +24180,32 @@ var LOCAL_RULE_OVERRIDES = {
24059
24180
  to: [...CODE_NODE_LABELS, "Symbol"]
24060
24181
  },
24061
24182
  REVEALED_BY: null,
24062
- PRODUCED: null
24183
+ PRODUCED: null,
24184
+ // FIXED_BY locally ALSO carries the fix-provenance sense: `resolveProblem`
24185
+ // attributes a closed Problem to the fixing `Episode` (PLAN_PLASTICITY §2.1)
24186
+ // alongside the cloud's Problem→Solution knowledge claim. Same shape as
24187
+ // PRODUCED/REVEALED_BY above — an Episode is code-layer and never drains, so
24188
+ // the cloud door's `to: [Solution]` rule is untouched. The `from` constraint
24189
+ // stays: the reversed (Solution)-FIXED_BY->(...) splash bug is the reason
24190
+ // this rule exists at all.
24191
+ FIXED_BY: { from: EDGE_RULES["FIXED_BY"]?.from, to: ["Solution", "Episode"] }
24063
24192
  };
24064
- var SCHEMA_VERSION = 5;
24193
+ function localEdgeViolation(fromLabel, type, toLabel) {
24194
+ if (type in LOCAL_RULE_OVERRIDES) {
24195
+ const rule = LOCAL_RULE_OVERRIDES[type];
24196
+ if (!rule) return null;
24197
+ if (fromLabel && rule.from && !rule.from.includes(fromLabel)) {
24198
+ return `${type} cannot originate from ${fromLabel} locally (allowed: ${rule.from.join(", ")})`;
24199
+ }
24200
+ if (toLabel && rule.to && !rule.to.includes(toLabel)) {
24201
+ return `${type} cannot target ${toLabel} locally (allowed: ${rule.to.join(", ")})`;
24202
+ }
24203
+ return null;
24204
+ }
24205
+ const verdict = isValidEdge(fromLabel, type, toLabel);
24206
+ return verdict.ok ? null : verdict.reason ?? "edge rule violation";
24207
+ }
24208
+ var SCHEMA_VERSION = 6;
24065
24209
  var SCHEMA_SQL = `
24066
24210
  CREATE TABLE IF NOT EXISTS schema_version (
24067
24211
  version INTEGER PRIMARY KEY
@@ -24076,6 +24220,21 @@ CREATE TABLE IF NOT EXISTS store_meta (
24076
24220
  value TEXT NOT NULL
24077
24221
  );
24078
24222
 
24223
+ -- Durable ledger of edges the ontology gate REFUSED, keyed by edge type.
24224
+ -- Durable rather than in-memory for one specific reason: the status command runs
24225
+ -- in a SEPARATE process and opens its own store handle, so a counter living on
24226
+ -- the instance reads 0 there forever. That is exactly how a producer rejecting
24227
+ -- 100% of its output stayed invisible for 17 days. Persisting it also survives
24228
+ -- the daemon restart that would otherwise erase the evidence.
24229
+ -- Keyed by type because a systematic producer bug shows up as ONE type
24230
+ -- dominating; sample keeps the latest reason so the count is actionable.
24231
+ CREATE TABLE IF NOT EXISTS edge_rejections (
24232
+ type TEXT PRIMARY KEY,
24233
+ count INTEGER NOT NULL DEFAULT 0,
24234
+ last_at INTEGER NOT NULL,
24235
+ sample TEXT
24236
+ );
24237
+
24079
24238
  CREATE TABLE IF NOT EXISTS nodes (
24080
24239
  id TEXT PRIMARY KEY,
24081
24240
  label TEXT NOT NULL,
@@ -24452,6 +24611,16 @@ var SqliteGraphStore = class {
24452
24611
  if (!cols.has(name2)) this.db.exec(ddl);
24453
24612
  }
24454
24613
  }
24614
+ if (from < 6) {
24615
+ this.db.exec(`
24616
+ CREATE TABLE IF NOT EXISTS edge_rejections (
24617
+ type TEXT PRIMARY KEY,
24618
+ count INTEGER NOT NULL DEFAULT 0,
24619
+ last_at INTEGER NOT NULL,
24620
+ sample TEXT
24621
+ )
24622
+ `);
24623
+ }
24455
24624
  this.db.prepare("UPDATE schema_version SET version = ?").run(SCHEMA_VERSION);
24456
24625
  });
24457
24626
  }
@@ -24533,6 +24702,7 @@ var SqliteGraphStore = class {
24533
24702
  const violation = this.edgeRuleViolation(edge);
24534
24703
  if (violation) {
24535
24704
  this.rejectedEdgeCount++;
24705
+ this.recordEdgeRejection(edge.type, violation, edge.lastSeenAt || edge.createdAt || 0);
24536
24706
  console.warn(`[local-graph] rejected edge ${edge.from}-[:${edge.type}]->${edge.to}: ${violation}`);
24537
24707
  return;
24538
24708
  }
@@ -24557,22 +24727,51 @@ var SqliteGraphStore = class {
24557
24727
  * overlay consulted first. Returns the reason string on a documented-
24558
24728
  * forbidden combination, else null. Point lookups on the id PK — negligible
24559
24729
  * next to the insert itself. */
24560
- edgeRuleViolation(edge) {
24561
- const fromLabel = this.getNode(edge.from)?.label;
24562
- const toLabel = this.getNode(edge.to)?.label;
24563
- if (edge.type in LOCAL_RULE_OVERRIDES) {
24564
- const rule = LOCAL_RULE_OVERRIDES[edge.type];
24565
- if (!rule) return null;
24566
- if (fromLabel && rule.from && !rule.from.includes(fromLabel)) {
24567
- return `${edge.type} cannot originate from ${fromLabel} locally (allowed: ${rule.from.join(", ")})`;
24568
- }
24569
- if (toLabel && rule.to && !rule.to.includes(toLabel)) {
24570
- return `${edge.type} cannot target ${toLabel} locally (allowed: ${rule.to.join(", ")})`;
24571
- }
24572
- return null;
24730
+ /** Upsert one refusal into the durable ledger. Best-effort: a bookkeeping
24731
+ * failure must never turn a refused edge into a thrown write. */
24732
+ recordEdgeRejection(type, reason, at) {
24733
+ try {
24734
+ this.db.prepare(
24735
+ `INSERT INTO edge_rejections (type, count, last_at, sample) VALUES (?, 1, ?, ?)
24736
+ ON CONFLICT(type) DO UPDATE SET
24737
+ count = count + 1, last_at = excluded.last_at, sample = excluded.sample`
24738
+ ).run(type, at, reason.slice(0, 200));
24739
+ } catch {
24573
24740
  }
24574
- const verdict = isValidEdge(fromLabel, edge.type, toLabel);
24575
- return verdict.ok ? null : verdict.reason ?? "edge rule violation";
24741
+ }
24742
+ /** Refusals recorded by the ontology gate, per edge type, newest activity first.
24743
+ * Durable across restarts and readable from any process (see the table note). */
24744
+ edgeRejections() {
24745
+ try {
24746
+ return this.db.prepare(
24747
+ "SELECT type, count, last_at AS lastAt, sample FROM edge_rejections ORDER BY count DESC, last_at DESC"
24748
+ ).all();
24749
+ } catch {
24750
+ return [];
24751
+ }
24752
+ }
24753
+ /** Drop ledger entries whose last refusal predates `cutoff`. A still-misbehaving
24754
+ * producer keeps refreshing `last_at` and survives; a fixed one fades out. */
24755
+ pruneEdgeRejections(cutoff) {
24756
+ try {
24757
+ this.db.prepare("DELETE FROM edge_rejections WHERE last_at < ?").run(cutoff);
24758
+ } catch {
24759
+ }
24760
+ }
24761
+ /** Clear the ledger outright, whole or per type — operator escape hatch. */
24762
+ clearEdgeRejections(type) {
24763
+ try {
24764
+ if (type) this.db.prepare("DELETE FROM edge_rejections WHERE type = ?").run(type);
24765
+ else this.db.exec("DELETE FROM edge_rejections");
24766
+ } catch {
24767
+ }
24768
+ }
24769
+ edgeRuleViolation(edge) {
24770
+ return localEdgeViolation(
24771
+ this.getNode(edge.from)?.label,
24772
+ edge.type,
24773
+ this.getNode(edge.to)?.label
24774
+ );
24576
24775
  }
24577
24776
  updateEdge(id, patch) {
24578
24777
  this.stmts.updateEdge.run({
@@ -24709,6 +24908,163 @@ var SqliteGraphStore = class {
24709
24908
  const rows = this.db.prepare("SELECT from_id, to_id, type FROM edges WHERE valid_to IS NULL").all();
24710
24909
  return rows.map((r) => ({ from: r.from_id, to: r.to_id, type: r.type }));
24711
24910
  }
24911
+ getMeta(key) {
24912
+ const r = this.db.prepare("SELECT value FROM store_meta WHERE key = ?").get(key);
24913
+ return r?.value ?? null;
24914
+ }
24915
+ setMeta(key, value) {
24916
+ this.db.prepare(
24917
+ "INSERT INTO store_meta (key, value) VALUES (:key, :value) ON CONFLICT(key) DO UPDATE SET value = excluded.value"
24918
+ ).run({ key, value });
24919
+ }
24920
+ dirtyNodeIdsSince(ts) {
24921
+ const rows = this.db.prepare("SELECT id FROM nodes WHERE valid_to IS NULL AND last_updated_at > ?").all(ts);
24922
+ return rows.map((r) => r.id);
24923
+ }
24924
+ /** Endpoints of edges TOUCHED since `ts` — created, re-seen, or CLOSED.
24925
+ * Closures matter as much as additions: a node that lost inflow is rank-dirty
24926
+ * while its own row never updated, so removal endpoints must seed the
24927
+ * incremental region or the stale inflow persists until the full backstop. */
24928
+ edgeEndpointsTouchedSince(ts) {
24929
+ const rows = this.db.prepare(
24930
+ `SELECT from_id, to_id FROM edges
24931
+ WHERE (valid_to IS NULL AND (created_at > :ts OR last_seen_at > :ts))
24932
+ OR (valid_to IS NOT NULL AND valid_to > :ts)`
24933
+ ).all({ ts });
24934
+ return rows.map((r) => ({ from: r.from_id, to: r.to_id }));
24935
+ }
24936
+ /** Lightweight out-edges for a SET of sources, chunked IN-lists — the region
24937
+ * assembly path for incremental PageRank (per-node outEdges() at region
24938
+ * scale re-creates the 106k-prepared-calls problem the batch scan solved). */
24939
+ outEdgesForMany(ids) {
24940
+ return this.edgesForMany(ids, "from_id");
24941
+ }
24942
+ inEdgesForMany(ids) {
24943
+ return this.edgesForMany(ids, "to_id");
24944
+ }
24945
+ /** Stored pageRank for a SET of ids (live rows only — a closed id is simply
24946
+ * absent, which is how incremental region assembly drops dead endpoints). */
24947
+ ranksForMany(ids) {
24948
+ const out2 = /* @__PURE__ */ new Map();
24949
+ const CHUNK = 400;
24950
+ for (let i2 = 0; i2 < ids.length; i2 += CHUNK) {
24951
+ const chunk = ids.slice(i2, i2 + CHUNK);
24952
+ const placeholders = chunk.map(() => "?").join(", ");
24953
+ const rows = this.db.prepare(
24954
+ `SELECT id, page_rank FROM nodes WHERE id IN (${placeholders}) AND valid_to IS NULL`
24955
+ ).all(...chunk);
24956
+ for (const r of rows) out2.set(r.id, r.page_rank);
24957
+ }
24958
+ return out2;
24959
+ }
24960
+ /** The minimal row set the landmark sweep needs — landmark CANDIDATES
24961
+ * (Pattern/RootCause), everything currently flagged, and every
24962
+ * persistent-tier node (force-landmarks). A few thousand rows, so the
24963
+ * incremental path can refresh the GLOBAL landmark set without the 179k-row
24964
+ * scanLiveNodes materialization. */
24965
+ landmarkSweepRows() {
24966
+ const rows = this.db.prepare(
24967
+ `SELECT id, label, page_rank, is_landmark, memory_tier, extraction_source FROM nodes
24968
+ WHERE valid_to IS NULL
24969
+ AND (memory_tier = 'persistent' OR is_landmark = 1 OR label IN ('Pattern', 'RootCause'))`
24970
+ ).all();
24971
+ return rows.map((r) => ({
24972
+ id: r.id,
24973
+ label: r.label,
24974
+ pageRank: r.page_rank,
24975
+ isLandmark: r.is_landmark === 1,
24976
+ memoryTier: r.memory_tier,
24977
+ extractionSource: r.extraction_source
24978
+ }));
24979
+ }
24980
+ edgesForMany(ids, col) {
24981
+ const out2 = [];
24982
+ const CHUNK = 400;
24983
+ for (let i2 = 0; i2 < ids.length; i2 += CHUNK) {
24984
+ const chunk = ids.slice(i2, i2 + CHUNK);
24985
+ const placeholders = chunk.map(() => "?").join(", ");
24986
+ const rows = this.db.prepare(
24987
+ `SELECT from_id, to_id, type FROM edges WHERE ${col} IN (${placeholders}) AND valid_to IS NULL`
24988
+ ).all(...chunk);
24989
+ for (const r of rows) out2.push({ from: r.from_id, to: r.to_id, type: r.type });
24990
+ }
24991
+ return out2;
24992
+ }
24993
+ checkpointWal() {
24994
+ try {
24995
+ const r = this.db.prepare("PRAGMA wal_checkpoint(TRUNCATE)").get();
24996
+ return r ?? null;
24997
+ } catch {
24998
+ return null;
24999
+ }
25000
+ }
25001
+ reviveReobserved(relPaths, workspaceId, since) {
25002
+ let revived = 0;
25003
+ const CHUNK = 400;
25004
+ for (let i2 = 0; i2 < relPaths.length; i2 += CHUNK) {
25005
+ const slice = relPaths.slice(i2, i2 + CHUNK);
25006
+ if (slice.length === 0) continue;
25007
+ const r = this.db.prepare(
25008
+ `UPDATE nodes SET valid_to = NULL
25009
+ WHERE valid_to IS NOT NULL
25010
+ AND last_updated_at >= ?
25011
+ AND json_extract(attrs_json, '$.workspaceId') = ?
25012
+ AND json_extract(attrs_json, '$.relPath') IN (${slice.map(() => "?").join(",")})`
25013
+ ).run(since, workspaceId, ...slice);
25014
+ revived += Number(r.changes);
25015
+ }
25016
+ if (revived > 0) this.mutations++;
25017
+ return revived;
25018
+ }
25019
+ recentEdgeAttrCoverage(marker, attr, limit) {
25020
+ const r = this.db.prepare(
25021
+ `SELECT COUNT(*) AS total,
25022
+ COALESCE(SUM(CASE WHEN json_extract(attrs_json, '$.' || ?) = 1 THEN 1 ELSE 0 END), 0) AS count
25023
+ FROM (SELECT attrs_json FROM edges
25024
+ WHERE valid_to IS NULL AND attrs_json LIKE ?
25025
+ ORDER BY created_at DESC LIMIT ?)`
25026
+ ).get(attr, `%${marker}%`, limit);
25027
+ return { count: Number(r.count), total: Number(r.total) };
25028
+ }
25029
+ liveNodeIds(ids) {
25030
+ const live = /* @__PURE__ */ new Set();
25031
+ const CHUNK = 900;
25032
+ for (let i2 = 0; i2 < ids.length; i2 += CHUNK) {
25033
+ const slice = ids.slice(i2, i2 + CHUNK);
25034
+ if (slice.length === 0) continue;
25035
+ const rows = this.db.prepare(
25036
+ `SELECT id FROM nodes WHERE valid_to IS NULL AND id IN (${slice.map(() => "?").join(",")})`
25037
+ ).all(...slice);
25038
+ for (const r of rows) live.add(r.id);
25039
+ }
25040
+ return live;
25041
+ }
25042
+ /**
25043
+ * Live edges WITH their endpoint labels and ids, resolved in ONE join.
25044
+ *
25045
+ * The ontology sweep needs (id, type, fromLabel, toLabel) for every live edge.
25046
+ * Doing that as `scanLiveEdges()` + two `getNode()` calls is 2N node reads —
25047
+ * 550,000 on this store — and each one deserializes the node's embedding blob.
25048
+ * Measured: the sweep did not finish in 10 minutes. As a single join it is one
25049
+ * query over an index-covered scan. Labels only; nothing here touches embeddings.
25050
+ */
25051
+ scanLiveEdgeRows() {
25052
+ const rows = this.db.prepare(
25053
+ `SELECT e.id, e.from_id, e.to_id, e.type, a.label AS from_label, b.label AS to_label
25054
+ FROM edges e
25055
+ LEFT JOIN nodes a ON a.id = e.from_id AND a.valid_to IS NULL
25056
+ LEFT JOIN nodes b ON b.id = e.to_id AND b.valid_to IS NULL
25057
+ WHERE e.valid_to IS NULL`
25058
+ ).all();
25059
+ return rows.map((r) => ({
25060
+ id: r.id,
25061
+ from: r.from_id,
25062
+ to: r.to_id,
25063
+ type: r.type,
25064
+ fromLabel: r.from_label ?? void 0,
25065
+ toLabel: r.to_label ?? void 0
25066
+ }));
25067
+ }
24712
25068
  /** Live nodes whose attrs.relPath is one of `relPaths`. Uses the nodes_relpath
24713
25069
  * expression index so the incremental reindex fetches only the changed files'
24714
25070
  * symbols instead of scanning every versioned node. */
@@ -24729,6 +25085,10 @@ var SqliteGraphStore = class {
24729
25085
  if (!live) return null;
24730
25086
  const version2 = live.version ?? 1;
24731
25087
  const frozenId = `${liveId}@v${version2}`;
25088
+ if (this.getNode(frozenId)) {
25089
+ this.stmts.advanceLive.run({ live_id: liveId, t });
25090
+ return frozenId;
25091
+ }
24732
25092
  this.stmts.freezeCopy.run({ frozen_id: frozenId, live_id: liveId, t });
24733
25093
  this.mergeEdge({
24734
25094
  id: `edge_superseded_${frozenId}`,
@@ -24787,6 +25147,7 @@ var CAUSAL_FAMILY = [
24787
25147
 
24788
25148
  // ../../packages/local-graph/src/justification.ts
24789
25149
  init_src();
25150
+ init_src2();
24790
25151
  function addDependency(store2, opts) {
24791
25152
  const id = digest({ from: opts.fromId, type: "DEPENDS_ON", to: opts.toId });
24792
25153
  const attrs = { relation: opts.relation };
@@ -24809,13 +25170,72 @@ function addDependency(store2, opts) {
24809
25170
  store2.mergeEdge(edge);
24810
25171
  return edge;
24811
25172
  }
24812
- function markRevisit(store2, node, reason, ts) {
25173
+ function markRevisit(store2, node, reason, ts, answeredWhen) {
24813
25174
  const fresh = store2.getNode(node.id) ?? node;
24814
25175
  store2.updateNode(node.id, {
24815
- attrs: { ...fresh.attrs, revisit: true, revisitReason: reason, revisitSinceTs: ts },
25176
+ attrs: {
25177
+ ...fresh.attrs,
25178
+ revisit: true,
25179
+ revisitReason: reason,
25180
+ revisitSinceTs: ts,
25181
+ revisitAnsweredWhen: answeredWhen
25182
+ },
24816
25183
  lastUpdatedAt: ts
24817
25184
  });
24818
25185
  }
25186
+ var LEGACY_AUTO_CLOSE_ASK = "auto-closed off a pre-provenance anchor";
25187
+ var KNOWN_CONDITIONS = {
25188
+ parentProblemOpen: true,
25189
+ dependentStale: true
25190
+ };
25191
+ function isRevisitCondition(v) {
25192
+ return typeof v === "string" && Object.prototype.hasOwnProperty.call(KNOWN_CONDITIONS, v);
25193
+ }
25194
+ function conditionOf(node) {
25195
+ const explicit = node.attrs["revisitAnsweredWhen"];
25196
+ if (isRevisitCondition(explicit)) return explicit;
25197
+ if (String(node.attrs["revisitReason"] ?? "").startsWith(LEGACY_AUTO_CLOSE_ASK)) {
25198
+ return "parentProblemOpen";
25199
+ }
25200
+ return void 0;
25201
+ }
25202
+ function clearAnsweredRevisits(store2, ts) {
25203
+ const report = { cleared: 0, standing: 0 };
25204
+ for (const label of SEMANTIC_NODE_LABELS) {
25205
+ for (const node of store2.findNodesByLabel(label)) {
25206
+ if (node.attrs["revisit"] !== true) continue;
25207
+ const condition = conditionOf(node);
25208
+ if (condition === void 0 || !isRevisitAnswered(store2, node, condition)) {
25209
+ report.standing++;
25210
+ continue;
25211
+ }
25212
+ clearRevisit(store2, node.id, ts);
25213
+ report.cleared++;
25214
+ }
25215
+ }
25216
+ return report;
25217
+ }
25218
+ function isRevisitAnswered(store2, node, condition) {
25219
+ switch (condition) {
25220
+ case "parentProblemOpen": {
25221
+ const parents = store2.inEdges(node.id, ["SOLVED_BY"]).map((e) => store2.getNode(e.from)).filter((n) => n !== null && n.validTo == null);
25222
+ return parents.every((p) => p.attrs["resolvedAt"] == null);
25223
+ }
25224
+ case "dependentStale": {
25225
+ const since = Number(node.attrs["revisitSinceTs"] ?? 0);
25226
+ return since > 0 && node.lastUpdatedAt > since;
25227
+ }
25228
+ }
25229
+ }
25230
+ function clearRevisit(store2, nodeId, ts) {
25231
+ const n = store2.getNode(nodeId);
25232
+ if (!n) return;
25233
+ const attrs = { ...n.attrs };
25234
+ delete attrs["revisit"];
25235
+ delete attrs["revisitReason"];
25236
+ delete attrs["revisitSinceTs"];
25237
+ store2.updateNode(nodeId, { attrs, lastUpdatedAt: ts });
25238
+ }
24819
25239
  function listNeedsRevisit(store2, asOf) {
24820
25240
  return store2.nodesAsOf(asOf).filter((n) => n.attrs["revisit"] === true).map((n) => ({
24821
25241
  id: n.id,
@@ -24948,7 +25368,6 @@ function markBoth(store2, a, b, patch, ts) {
24948
25368
  // ../../packages/local-graph/src/design-problem.ts
24949
25369
  init_src();
24950
25370
  init_src();
24951
- init_src2();
24952
25371
 
24953
25372
  // ../../packages/local-graph/src/problem-package-link.ts
24954
25373
  init_src();
@@ -25134,42 +25553,102 @@ function backfillProblemContext(store2, ts) {
25134
25553
  }
25135
25554
 
25136
25555
  // ../../packages/local-graph/src/design-problem.ts
25137
- function buildNode(id, label, description, ts, attrs) {
25138
- return {
25139
- id,
25140
- label,
25141
- description,
25142
- extractionConfidence: 0.4,
25143
- // provisional: below the error-path's 0.6+
25144
- extractionSource: "agent-observed",
25145
- embedding: [],
25146
- cumulativeSurprise: 0,
25147
- peakSurprise: 0,
25148
- cumulativeHits: 1,
25149
- lastUpdatedAt: ts,
25150
- createdAt: ts,
25151
- memoryTier: "short-term",
25152
- pageRank: 0,
25153
- isLandmark: false,
25154
- community: null,
25155
- stability: "unstable",
25156
- attrs
25157
- };
25556
+ init_src2();
25557
+
25558
+ // ../../packages/local-graph/src/problem-dedup.ts
25559
+ init_src();
25560
+ init_src();
25561
+ var REDIRECT_EDGES = [
25562
+ "CAUSED_BY",
25563
+ "SOLVED_BY",
25564
+ "FIXED_BY",
25565
+ "ANCHORED_AT",
25566
+ "MANIFESTED_IN",
25567
+ "EVIDENCED_BY"
25568
+ ];
25569
+ function corroborations(n) {
25570
+ return Number(n.attrs["corroborations"] ?? 0);
25158
25571
  }
25159
- function mergeEdge(store2, from, to, type, ts) {
25160
- store2.mergeEdge({
25161
- id: `edge_${digest({ from, type, to })}`.slice(0, 24),
25162
- from,
25163
- to,
25164
- type,
25165
- confidence: 0.4,
25166
- extractionSource: "agent-observed",
25167
- createdAt: ts,
25168
- lastSeenAt: ts,
25169
- navSuccesses: 0,
25170
- navFailures: 0,
25171
- attrs: { provisional: true }
25572
+ function overlap(a, b) {
25573
+ if (a.size === 0 || b.size === 0) return 0;
25574
+ let inter = 0;
25575
+ for (const x of a) if (b.has(x)) inter++;
25576
+ return inter / Math.min(a.size, b.size);
25577
+ }
25578
+ function mergeDuplicateProblems(store2, opts) {
25579
+ const minOverlap = opts.minOverlap ?? 0.85;
25580
+ const minTokens = opts.minTokens ?? 4;
25581
+ const report = { clusters: 0, merged: 0 };
25582
+ const open = store2.findNodesByLabel("Problem").filter((p) => p.attrs["resolvedAt"] == null && p.attrs["mergedInto"] === void 0);
25583
+ const tokens = /* @__PURE__ */ new Map();
25584
+ for (const p of open) tokens.set(p.id, new Set(retrievalTokens(p.description)));
25585
+ const consumed = /* @__PURE__ */ new Set();
25586
+ store2.transaction(() => {
25587
+ for (let i2 = 0; i2 < open.length; i2++) {
25588
+ const a = open[i2];
25589
+ if (consumed.has(a.id)) continue;
25590
+ const cluster = [a];
25591
+ const ta = tokens.get(a.id);
25592
+ for (let j = i2 + 1; j < open.length; j++) {
25593
+ const b = open[j];
25594
+ if (consumed.has(b.id)) continue;
25595
+ const tb = tokens.get(b.id);
25596
+ if (Math.min(ta.size, tb.size) < minTokens) continue;
25597
+ if (isConstraintProblem(a) !== isConstraintProblem(b)) continue;
25598
+ if (overlap(ta, tb) >= minOverlap) {
25599
+ cluster.push(b);
25600
+ consumed.add(b.id);
25601
+ }
25602
+ }
25603
+ if (cluster.length < 2) continue;
25604
+ report.clusters++;
25605
+ cluster.sort((x, y) => corroborations(y) - corroborations(x) || x.createdAt - y.createdAt);
25606
+ const survivor = cluster[0];
25607
+ for (const dup of cluster.slice(1)) {
25608
+ foldDuplicateProblem(store2, dup, survivor, opts.ts);
25609
+ report.merged++;
25610
+ }
25611
+ }
25612
+ });
25613
+ return report;
25614
+ }
25615
+ function foldDuplicateProblem(store2, dup, survivor, ts) {
25616
+ const surv = store2.getNode(survivor.id);
25617
+ if (!surv) return;
25618
+ const sources = new Set(surv.attrs["sources"] ?? []);
25619
+ for (const s of dup.attrs["sources"] ?? []) sources.add(s);
25620
+ store2.updateNode(survivor.id, {
25621
+ attrs: {
25622
+ ...surv.attrs,
25623
+ sources: [...sources],
25624
+ corroborations: corroborations(surv) + corroborations(dup) + 1
25625
+ },
25626
+ cumulativeHits: (surv.cumulativeHits ?? 0) + (dup.cumulativeHits ?? 0),
25627
+ lastUpdatedAt: ts
25172
25628
  });
25629
+ for (const e of store2.outEdges(dup.id, REDIRECT_EDGES)) {
25630
+ if (e.to === survivor.id) continue;
25631
+ const id = `edge_${digest({ from: survivor.id, type: e.type, to: e.to })}`.slice(0, 24);
25632
+ if (store2.getEdge(id)) continue;
25633
+ const redirected = {
25634
+ ...e,
25635
+ id,
25636
+ from: survivor.id,
25637
+ createdAt: ts,
25638
+ lastSeenAt: ts
25639
+ };
25640
+ store2.mergeEdge(redirected);
25641
+ }
25642
+ store2.updateNode(dup.id, {
25643
+ attrs: { ...dup.attrs, mergedInto: survivor.id, resolvedAs: "duplicate", resolvedAt: ts },
25644
+ lastUpdatedAt: ts
25645
+ });
25646
+ store2.closeNode(dup.id, ts);
25647
+ }
25648
+
25649
+ // ../../packages/local-graph/src/design-problem.ts
25650
+ function isConstraintProblem(node) {
25651
+ return node.attrs["kind"] === "constraint";
25173
25652
  }
25174
25653
  var CITABLE_PRIOR_LABELS = /* @__PURE__ */ new Set([
25175
25654
  "Solution",
@@ -25178,6 +25657,9 @@ var CITABLE_PRIOR_LABELS = /* @__PURE__ */ new Set([
25178
25657
  "Technique",
25179
25658
  "AntiPattern"
25180
25659
  ]);
25660
+ function isAutoMinted(n) {
25661
+ return n.label === "Solution" && String(n.description ?? "").startsWith(AUTO_MINT_PREFIX);
25662
+ }
25181
25663
  function priorsForFile(store2, relPath) {
25182
25664
  const want = relPath.trim().replace(/^\.?\//, "");
25183
25665
  let file2 = null;
@@ -25189,35 +25671,53 @@ function priorsForFile(store2, relPath) {
25189
25671
  }
25190
25672
  if (!file2) return null;
25191
25673
  const openProblems = [];
25674
+ const constraints = [];
25675
+ const resolvedProblems = [];
25192
25676
  const seenProblem = /* @__PURE__ */ new Set();
25193
25677
  const related = /* @__PURE__ */ new Map();
25194
25678
  for (const e of store2.inEdges(file2.id, ["ANCHORED_AT"])) {
25195
25679
  const n = store2.getNode(e.from);
25196
25680
  if (!n) continue;
25197
25681
  if (n.label === "Problem") {
25198
- if (!n.attrs["resolvedAt"] && !seenProblem.has(n.id)) {
25199
- seenProblem.add(n.id);
25200
- openProblems.push(n);
25201
- }
25202
- } else if (CITABLE_PRIOR_LABELS.has(n.label)) {
25682
+ if (seenProblem.has(n.id)) continue;
25683
+ seenProblem.add(n.id);
25684
+ if (!n.attrs["resolvedAt"]) {
25685
+ (isConstraintProblem(n) ? constraints : openProblems).push(n);
25686
+ } else if (n.attrs["resolvedAs"] == null && n.attrs["mergedInto"] === void 0 && e.attrs?.["anchorProvenance"] !== "legacy") {
25687
+ resolvedProblems.push(n);
25688
+ }
25689
+ } else if (CITABLE_PRIOR_LABELS.has(n.label) && !isAutoMinted(n)) {
25203
25690
  related.set(n.id, n);
25204
25691
  }
25205
25692
  }
25206
25693
  const solutionsByProblem = /* @__PURE__ */ new Map();
25207
- for (const p of openProblems) {
25694
+ for (const p of [...openProblems, ...constraints, ...resolvedProblems]) {
25208
25695
  for (const e of store2.outEdges(p.id, ["SOLVED_BY", "CAUSED_BY", "INSTANCE_OF"])) {
25209
25696
  const n = store2.getNode(e.to);
25210
- if (n && CITABLE_PRIOR_LABELS.has(n.label)) related.set(n.id, n);
25211
- if (n && n.label === "Solution" && e.type === "SOLVED_BY") {
25697
+ if (n && CITABLE_PRIOR_LABELS.has(n.label) && !isAutoMinted(n)) related.set(n.id, n);
25698
+ if (n && n.label === "Solution" && e.type === "SOLVED_BY" && !isAutoMinted(n)) {
25212
25699
  const list = solutionsByProblem.get(p.id) ?? [];
25213
25700
  if (!list.some((s) => s.id === n.id)) list.push(n);
25214
25701
  solutionsByProblem.set(p.id, list);
25215
25702
  }
25216
25703
  }
25217
25704
  }
25218
- if (openProblems.length === 0 && related.size === 0) return null;
25219
- openProblems.sort((a, b) => (b.lastUpdatedAt ?? 0) - (a.lastUpdatedAt ?? 0));
25220
- return { file: file2, openProblems, related: [...related.values()], solutionsByProblem };
25705
+ if (openProblems.length === 0 && constraints.length === 0 && resolvedProblems.length === 0 && related.size === 0)
25706
+ return null;
25707
+ const recentFirst = (a, b) => (b.lastUpdatedAt ?? 0) - (a.lastUpdatedAt ?? 0);
25708
+ openProblems.sort(recentFirst);
25709
+ constraints.sort(recentFirst);
25710
+ resolvedProblems.sort(
25711
+ (a, b) => Number(b.attrs["resolvedAt"] ?? 0) - Number(a.attrs["resolvedAt"] ?? 0)
25712
+ );
25713
+ return {
25714
+ file: file2,
25715
+ openProblems,
25716
+ constraints,
25717
+ resolvedProblems,
25718
+ related: [...related.values()],
25719
+ solutionsByProblem
25720
+ };
25221
25721
  }
25222
25722
  function recordAnchorHint(store2, problemId, relPath, provenance, ts) {
25223
25723
  const p = store2.getNode(problemId);
@@ -25228,18 +25728,49 @@ function recordAnchorHint(store2, problemId, relPath, provenance, ts) {
25228
25728
  });
25229
25729
  return true;
25230
25730
  }
25231
- function resolveDesignProblems(store2, t) {
25731
+ function reopenAutoClosedProblems(store2, t) {
25732
+ const report = { reopened: 0, alreadySuspect: 0, agentDescribed: 0 };
25733
+ for (const p of store2.findNodesByLabel("Problem")) {
25734
+ if (p.attrs["resolvedAt"] == null) continue;
25735
+ if (p.attrs["resolvedAs"] != null) continue;
25736
+ if (p.attrs["mergedInto"] !== void 0) continue;
25737
+ if (p.attrs["resolutionWitnessed"] === true) {
25738
+ report.agentDescribed++;
25739
+ continue;
25740
+ }
25741
+ const sols = store2.outEdges(p.id, ["SOLVED_BY"]).map((e) => store2.getNode(e.to)).filter((n) => n !== null);
25742
+ if (sols.length === 0) continue;
25743
+ if (!sols.every((s) => String(s.description ?? "").startsWith(AUTO_MINT_PREFIX))) {
25744
+ report.agentDescribed++;
25745
+ continue;
25746
+ }
25747
+ if (p.attrs["resolutionSuspect"] === true) report.alreadySuspect++;
25748
+ const attrs = { ...p.attrs };
25749
+ delete attrs["resolvedAt"];
25750
+ attrs["reopenedFrom"] = "auto-close";
25751
+ attrs["reopenedAt"] = t;
25752
+ store2.updateNode(p.id, { attrs, lastUpdatedAt: t });
25753
+ report.reopened++;
25754
+ }
25755
+ return report;
25756
+ }
25757
+ var AUTO_MINT_PREFIX = "addressed by an edit to ";
25758
+ function markFixCandidates(store2, t) {
25232
25759
  let resolved = 0;
25233
25760
  for (const p of store2.findNodesByLabel("Problem")) {
25234
25761
  if (!p.id.startsWith("dprob_")) continue;
25235
25762
  if (p.attrs["resolvedAt"]) continue;
25763
+ if (isConstraintProblem(p)) continue;
25236
25764
  let symName = "";
25237
25765
  let symRelPath;
25238
25766
  let edited = false;
25767
+ const since = Math.max(p.createdAt, Number(p.attrs["fixCandidateClearedAt"] ?? 0));
25239
25768
  for (const e of store2.outEdges(p.id, ["ANCHORED_AT"])) {
25240
25769
  if (e.attrs?.["mention"] === true) continue;
25770
+ if (e.attrs?.["anchorProvenance"] === "legacy") continue;
25241
25771
  const sym = store2.getNode(e.to);
25242
- if (sym && sym.lastUpdatedAt > p.createdAt) {
25772
+ const changedAt = sym?.label === "File" ? Number(sym.attrs["contentChangedAt"] ?? 0) : sym?.lastUpdatedAt ?? 0;
25773
+ if (sym && changedAt > since) {
25243
25774
  edited = true;
25244
25775
  symName = sym.description;
25245
25776
  symRelPath = sym.attrs["relPath"] ?? void 0;
@@ -25247,36 +25778,172 @@ function resolveDesignProblems(store2, t) {
25247
25778
  }
25248
25779
  }
25249
25780
  if (!edited) continue;
25250
- if (store2.outEdges(p.id, ["SOLVED_BY"]).length === 0) {
25251
- const solId = `dfix_${digest({ problemId: p.id, edit: t })}`.slice(0, 56);
25252
- store2.mergeNode(
25253
- buildNode(solId, "Solution", `addressed by an edit to ${symName}`, t, {
25254
- source: "convo",
25255
- provisional: false,
25256
- // AC-resolution-attrs: the resolving symbol/file as STRUCTURED data, not
25257
- // just prose — the F2 join key downstream backfills and the viz read.
25258
- resolvedSymbols: [symName],
25259
- ...symRelPath ? { resolvedRelPath: symRelPath } : {}
25260
- })
25261
- );
25262
- mergeEdge(store2, p.id, solId, "SOLVED_BY", t);
25263
- for (const ae of store2.outEdges(p.id, ["ANCHORED_AT"]))
25264
- mergeEdge(store2, solId, ae.to, "ANCHORED_AT", t);
25265
- }
25781
+ if (p.attrs["fixCandidateAt"] !== void 0) continue;
25782
+ if (store2.outEdges(p.id, ["SOLVED_BY"]).some((e) => {
25783
+ const s = store2.getNode(e.to);
25784
+ return s !== null && !String(s.description ?? "").startsWith(AUTO_MINT_PREFIX);
25785
+ }))
25786
+ continue;
25266
25787
  store2.updateNode(p.id, {
25267
- attrs: { ...p.attrs, provisional: false, resolvedAt: t },
25788
+ attrs: {
25789
+ ...p.attrs,
25790
+ // The cue, kept as structured data so the render can name the file it is
25791
+ // asking about. Deliberately NOT `resolvedAt` — this is a question.
25792
+ fixCandidateAt: t,
25793
+ fixCandidateSymbol: symName,
25794
+ ...symRelPath ? { fixCandidateFile: symRelPath } : {},
25795
+ // Snapshot the render-ledger counter so "shown since THIS ask" is
25796
+ // measurable. `shownCount` is the node's LIFETIME count across every
25797
+ // band, so comparing it raw would retire a fresh ask on a
25798
+ // frequently-surfaced problem before anyone had seen the question once.
25799
+ fixCandidateShownBase: Number(p.attrs["shownCount"] ?? 0)
25800
+ },
25268
25801
  lastUpdatedAt: t
25269
25802
  });
25270
25803
  resolved++;
25271
25804
  }
25272
25805
  return resolved;
25273
25806
  }
25807
+ var FIX_CANDIDATE_ASK_LIMIT = 5;
25808
+ function clearSettledFixCandidates(store2, t) {
25809
+ const report = { answered: 0, ignored: 0, unsubstantiated: 0, standing: 0 };
25810
+ for (const p of store2.findNodesByLabel("Problem")) {
25811
+ if (p.attrs["fixCandidateAt"] === void 0) continue;
25812
+ const fileAnchors = store2.outEdges(p.id, ["ANCHORED_AT"]).filter((e) => e.attrs?.["mention"] !== true && e.attrs?.["anchorProvenance"] !== "legacy").map((e) => store2.getNode(e.to)).filter((n) => n !== null && n.label === "File");
25813
+ const unsubstantiated = fileAnchors.length > 0 && fileAnchors.every((f) => f.attrs["contentChangedAt"] === void 0);
25814
+ const answered = p.attrs["resolvedAt"] != null || store2.outEdges(p.id, ["SOLVED_BY"]).some((e) => {
25815
+ const s = store2.getNode(e.to);
25816
+ return s !== null && !String(s.description ?? "").startsWith(AUTO_MINT_PREFIX);
25817
+ });
25818
+ const base = Number(
25819
+ p.attrs["fixCandidateShownBase"] ?? p.attrs["shownCount"] ?? 0
25820
+ );
25821
+ const shownSinceAsk = Number(p.attrs["shownCount"] ?? 0) - base;
25822
+ const ignored = shownSinceAsk >= FIX_CANDIDATE_ASK_LIMIT;
25823
+ if (!answered && !ignored && !unsubstantiated) {
25824
+ report.standing++;
25825
+ continue;
25826
+ }
25827
+ const attrs = { ...p.attrs };
25828
+ delete attrs["fixCandidateAt"];
25829
+ delete attrs["fixCandidateSymbol"];
25830
+ delete attrs["fixCandidateFile"];
25831
+ attrs["fixCandidateClearedAt"] = t;
25832
+ store2.updateNode(p.id, { attrs, lastUpdatedAt: t });
25833
+ if (answered) report.answered++;
25834
+ else if (ignored) report.ignored++;
25835
+ else report.unsubstantiated++;
25836
+ }
25837
+ return report;
25838
+ }
25839
+
25840
+ // ../../packages/local-graph/src/intent.ts
25841
+ init_src();
25274
25842
 
25275
25843
  // ../../packages/local-graph/src/anchor-backfill.ts
25276
- var AUTO_MINT_PREFIX = "addressed by an edit to ";
25844
+ init_src();
25845
+ init_src2();
25277
25846
  function isLegacyAnchor(attrs) {
25278
25847
  return attrs?.["captureTime"] === true && attrs["anchorProvenance"] === void 0;
25279
25848
  }
25849
+ var STATEMENT_PATH_RE = new RegExp(
25850
+ String.raw`(?:[\w.+-]+\/)+[\w.+-]+\.(?:${anchorableExtensionAlternation()})`,
25851
+ "g"
25852
+ );
25853
+ function repairLegacyAnchorsFromStatement(store2, ts) {
25854
+ const report = {
25855
+ repaired: [],
25856
+ retiredGuesses: 0,
25857
+ noPathNamed: 0,
25858
+ pathUnknown: 0,
25859
+ alreadyCorrect: 0
25860
+ };
25861
+ const byPath = /* @__PURE__ */ new Map();
25862
+ for (const f of store2.findNodesByLabel("File")) {
25863
+ const path = String(f.attrs["relPath"] ?? f.description ?? "");
25864
+ if (path) byPath.set(path, { id: f.id, path });
25865
+ }
25866
+ const resolvePath = (named) => {
25867
+ const exact = byPath.get(named);
25868
+ if (exact) return exact;
25869
+ const hits = [...byPath.values()].filter(
25870
+ (f) => f.path.endsWith(`/${named}`) || named.endsWith(`/${f.path}`)
25871
+ );
25872
+ return hits.length === 1 ? hits[0] : null;
25873
+ };
25874
+ for (const p of store2.findNodesByLabel("Problem")) {
25875
+ try {
25876
+ const anchors = store2.outEdges(p.id, ["ANCHORED_AT"]);
25877
+ const legacy = anchors.filter((e) => e.attrs?.["anchorProvenance"] === "legacy");
25878
+ if (legacy.length === 0) continue;
25879
+ const better = anchors.filter((e) => {
25880
+ const prov = e.attrs?.["anchorProvenance"];
25881
+ return prov === "restated" || prov === "witnessed" || prov === "edited";
25882
+ });
25883
+ if (better.length > 0) {
25884
+ const betterTargets = new Set(better.map((e) => e.to));
25885
+ let retired = 0;
25886
+ for (const e of legacy) {
25887
+ if (!betterTargets.has(e.to)) {
25888
+ store2.closeEdge(e.id, ts);
25889
+ retired++;
25890
+ }
25891
+ }
25892
+ report.retiredGuesses += retired;
25893
+ continue;
25894
+ }
25895
+ const named = [...String(p.description ?? "").matchAll(STATEMENT_PATH_RE)].map((m) => m[0]);
25896
+ if (named.length === 0) {
25897
+ report.noPathNamed++;
25898
+ continue;
25899
+ }
25900
+ const guessedPaths = legacy.map((e) => {
25901
+ const f = store2.getNode(e.to);
25902
+ return String(f?.attrs["relPath"] ?? f?.description ?? "");
25903
+ });
25904
+ if (named.some((x) => guessedPaths.some((g) => g.endsWith(x) || x.endsWith(g)))) {
25905
+ report.alreadyCorrect++;
25906
+ continue;
25907
+ }
25908
+ const target = named.map(resolvePath).find((f) => f !== null);
25909
+ if (!target) {
25910
+ report.pathUnknown++;
25911
+ continue;
25912
+ }
25913
+ store2.mergeEdge({
25914
+ id: `edge_${digest({ from: p.id, type: "ANCHORED_AT", to: target.id })}`.slice(0, 24),
25915
+ from: p.id,
25916
+ to: target.id,
25917
+ type: "ANCHORED_AT",
25918
+ // Same confidence a capture-time anchor enters at: the source is the
25919
+ // agent's own statement either way, only the moment of reading differs.
25920
+ confidence: 0.4,
25921
+ extractionSource: "agent-observed",
25922
+ createdAt: ts,
25923
+ lastSeenAt: ts,
25924
+ navSuccesses: 0,
25925
+ navFailures: 0,
25926
+ attrs: {
25927
+ anchorProvenance: "restated",
25928
+ restatedFrom: guessedPaths[0] ?? "",
25929
+ restatedAt: ts
25930
+ }
25931
+ });
25932
+ for (const e of legacy) {
25933
+ if (e.to !== target.id) store2.closeEdge(e.id, ts);
25934
+ }
25935
+ report.retiredGuesses += legacy.filter((e) => e.to !== target.id).length;
25936
+ report.repaired.push({
25937
+ problemId: p.id,
25938
+ problem: p.description,
25939
+ guessed: guessedPaths[0] ?? "",
25940
+ restated: target.path
25941
+ });
25942
+ } catch {
25943
+ }
25944
+ }
25945
+ return report;
25946
+ }
25280
25947
  function backfillLegacyAnchors(store2, ts) {
25281
25948
  const report = {
25282
25949
  demotedEdges: 0,
@@ -25316,7 +25983,11 @@ function backfillLegacyAnchors(store2, ts) {
25316
25983
  store2,
25317
25984
  sol,
25318
25985
  `auto-closed off a pre-provenance anchor (guessed ${guessedAnchor}) \u2014 confirm the problem is really fixed, or reopen it`,
25319
- ts
25986
+ ts,
25987
+ // "or reopen it" is half the ask, and the nightly reopen takes that
25988
+ // branch — so record what would answer this, or the flag can never be
25989
+ // lowered and the band fills with settled questions.
25990
+ "parentProblemOpen"
25320
25991
  );
25321
25992
  store2.updateNode(p.id, {
25322
25993
  attrs: { ...p.attrs, resolutionSuspect: true },
@@ -25350,7 +26021,7 @@ function pagerank(input) {
25350
26021
  const ids = input.nodeIds;
25351
26022
  const n = ids.length;
25352
26023
  if (n === 0) {
25353
- return { scores: /* @__PURE__ */ new Map(), iterations: 0, converged: true };
26024
+ return { scores: /* @__PURE__ */ new Map(), iterations: 0, converged: true, danglingRank: 0 };
25354
26025
  }
25355
26026
  const index = /* @__PURE__ */ new Map();
25356
26027
  for (let i2 = 0; i2 < n; i2++) index.set(ids[i2], i2);
@@ -25422,8 +26093,12 @@ function pagerank(input) {
25422
26093
  }
25423
26094
  }
25424
26095
  const scores = /* @__PURE__ */ new Map();
25425
- for (let i2 = 0; i2 < n; i2++) scores.set(ids[i2], score2[i2]);
25426
- return { scores, iterations: iter, converged };
26096
+ let danglingRank = 0;
26097
+ for (let i2 = 0; i2 < n; i2++) {
26098
+ scores.set(ids[i2], score2[i2]);
26099
+ if (dangling[i2]) danglingRank += score2[i2];
26100
+ }
26101
+ return { scores, iterations: iter, converged, danglingRank };
25427
26102
  }
25428
26103
  function markLandmarks(scores, percentile = 0.1, filter) {
25429
26104
  const entries = [...scores.entries()];
@@ -25433,7 +26108,7 @@ function markLandmarks(scores, percentile = 0.1, filter) {
25433
26108
  }
25434
26109
  }
25435
26110
  if (entries.length === 0) return /* @__PURE__ */ new Set();
25436
- entries.sort((a, b) => b[1] - a[1]);
26111
+ entries.sort((a, b) => b[1] - a[1] || (a[0] < b[0] ? -1 : a[0] > b[0] ? 1 : 0));
25437
26112
  const cutoff = Math.max(1, Math.floor(entries.length * percentile));
25438
26113
  const out2 = /* @__PURE__ */ new Set();
25439
26114
  for (let i2 = 0; i2 < cutoff; i2++) {
@@ -25671,8 +26346,86 @@ function motifDecision(input) {
25671
26346
  };
25672
26347
  }
25673
26348
 
25674
- // ../../packages/local-graph/src/community.ts
25675
- init_src2();
26349
+ // ../../packages/math/src/pagerank-local.ts
26350
+ function pagerankLocal(input) {
26351
+ const damping = input.damping ?? 0.85;
26352
+ const tol = input.tolerance ?? 1e-6;
26353
+ const maxIter = input.maxIterations ?? 100;
26354
+ const ids = input.regionIds;
26355
+ const n = ids.length;
26356
+ if (n === 0 || input.globalN === 0) {
26357
+ return { scores: /* @__PURE__ */ new Map(), iterations: 0, converged: true };
26358
+ }
26359
+ const index = /* @__PURE__ */ new Map();
26360
+ for (let i2 = 0; i2 < n; i2++) index.set(ids[i2], i2);
26361
+ const base = (1 - damping) / input.globalN;
26362
+ const outSum = new Float64Array(n);
26363
+ const inflow = new Float64Array(n);
26364
+ let score2 = new Float64Array(n);
26365
+ for (let i2 = 0; i2 < n; i2++) {
26366
+ const id = ids[i2];
26367
+ outSum[i2] = input.outSum.get(id) ?? 0;
26368
+ inflow[i2] = input.boundaryInflow.get(id) ?? 0;
26369
+ score2[i2] = input.rank0.get(id) ?? base;
26370
+ }
26371
+ const rowLen = new Int32Array(n);
26372
+ let edgeCount = 0;
26373
+ for (const [from, edges] of input.out) {
26374
+ const fi = index.get(from);
26375
+ if (fi === void 0) continue;
26376
+ let inSet = 0;
26377
+ for (const e of edges) if (index.has(e.to)) inSet++;
26378
+ rowLen[fi] = inSet;
26379
+ edgeCount += inSet;
26380
+ }
26381
+ const rowStart = new Int32Array(n + 1);
26382
+ for (let i2 = 0; i2 < n; i2++) rowStart[i2 + 1] = rowStart[i2] + rowLen[i2];
26383
+ const colIdx = new Int32Array(edgeCount);
26384
+ const colW = new Float64Array(edgeCount);
26385
+ const cursor = rowStart.slice(0, n);
26386
+ for (const [from, edges] of input.out) {
26387
+ const fi = index.get(from);
26388
+ if (fi === void 0) continue;
26389
+ for (const e of edges) {
26390
+ const ti = index.get(e.to);
26391
+ if (ti === void 0) continue;
26392
+ const c = cursor[fi];
26393
+ cursor[fi] = c + 1;
26394
+ colIdx[c] = ti;
26395
+ colW[c] = e.weight;
26396
+ }
26397
+ }
26398
+ const externalDangling = input.externalDanglingRank ?? 0;
26399
+ let next = new Float64Array(n);
26400
+ let iter = 0;
26401
+ let converged = false;
26402
+ for (; iter < maxIter; iter++) {
26403
+ let internalDangling = 0;
26404
+ for (let i2 = 0; i2 < n; i2++) if (outSum[i2] <= 0) internalDangling += score2[i2];
26405
+ const danglingShare = damping * (internalDangling + externalDangling) / input.globalN;
26406
+ for (let i2 = 0; i2 < n; i2++) next[i2] = base + danglingShare + damping * inflow[i2];
26407
+ for (let i2 = 0; i2 < n; i2++) {
26408
+ const os2 = outSum[i2];
26409
+ if (os2 <= 0) continue;
26410
+ const f = damping * score2[i2] / os2;
26411
+ const end = rowStart[i2 + 1];
26412
+ for (let c = rowStart[i2]; c < end; c++) next[colIdx[c]] += f * colW[c];
26413
+ }
26414
+ let diff = 0;
26415
+ for (let i2 = 0; i2 < n; i2++) diff += Math.abs(next[i2] - score2[i2]);
26416
+ const tmp = score2;
26417
+ score2 = next;
26418
+ next = tmp;
26419
+ if (diff < tol) {
26420
+ iter++;
26421
+ converged = true;
26422
+ break;
26423
+ }
26424
+ }
26425
+ const scores = /* @__PURE__ */ new Map();
26426
+ for (let i2 = 0; i2 < n; i2++) scores.set(ids[i2], score2[i2]);
26427
+ return { scores, iterations: iter, converged };
26428
+ }
25676
26429
 
25677
26430
  // ../../packages/local-graph/src/triage.ts
25678
26431
  init_src();
@@ -25681,95 +26434,8 @@ init_src();
25681
26434
  init_src2();
25682
26435
  var DRIFT_VALUES = new Set(Object.values(DRIFT_KIND));
25683
26436
 
25684
- // ../../packages/local-graph/src/problem-dedup.ts
25685
- init_src();
25686
- init_src();
25687
- var REDIRECT_EDGES = [
25688
- "CAUSED_BY",
25689
- "SOLVED_BY",
25690
- "FIXED_BY",
25691
- "ANCHORED_AT",
25692
- "MANIFESTED_IN",
25693
- "EVIDENCED_BY"
25694
- ];
25695
- function corroborations(n) {
25696
- return Number(n.attrs["corroborations"] ?? 0);
25697
- }
25698
- function overlap(a, b) {
25699
- if (a.size === 0 || b.size === 0) return 0;
25700
- let inter = 0;
25701
- for (const x of a) if (b.has(x)) inter++;
25702
- return inter / Math.min(a.size, b.size);
25703
- }
25704
- function mergeDuplicateProblems(store2, opts) {
25705
- const minOverlap = opts.minOverlap ?? 0.85;
25706
- const minTokens = opts.minTokens ?? 4;
25707
- const report = { clusters: 0, merged: 0 };
25708
- const open = store2.findNodesByLabel("Problem").filter((p) => p.attrs["resolvedAt"] == null && p.attrs["mergedInto"] === void 0);
25709
- const tokens = /* @__PURE__ */ new Map();
25710
- for (const p of open) tokens.set(p.id, new Set(conceptTokens(p.description)));
25711
- const consumed = /* @__PURE__ */ new Set();
25712
- store2.transaction(() => {
25713
- for (let i2 = 0; i2 < open.length; i2++) {
25714
- const a = open[i2];
25715
- if (consumed.has(a.id)) continue;
25716
- const cluster = [a];
25717
- const ta = tokens.get(a.id);
25718
- for (let j = i2 + 1; j < open.length; j++) {
25719
- const b = open[j];
25720
- if (consumed.has(b.id)) continue;
25721
- const tb = tokens.get(b.id);
25722
- if (Math.min(ta.size, tb.size) < minTokens) continue;
25723
- if (overlap(ta, tb) >= minOverlap) {
25724
- cluster.push(b);
25725
- consumed.add(b.id);
25726
- }
25727
- }
25728
- if (cluster.length < 2) continue;
25729
- report.clusters++;
25730
- cluster.sort((x, y) => corroborations(y) - corroborations(x) || x.createdAt - y.createdAt);
25731
- const survivor = cluster[0];
25732
- for (const dup of cluster.slice(1)) {
25733
- foldDuplicateProblem(store2, dup, survivor, opts.ts);
25734
- report.merged++;
25735
- }
25736
- }
25737
- });
25738
- return report;
25739
- }
25740
- function foldDuplicateProblem(store2, dup, survivor, ts) {
25741
- const surv = store2.getNode(survivor.id);
25742
- if (!surv) return;
25743
- const sources = new Set(surv.attrs["sources"] ?? []);
25744
- for (const s of dup.attrs["sources"] ?? []) sources.add(s);
25745
- store2.updateNode(survivor.id, {
25746
- attrs: {
25747
- ...surv.attrs,
25748
- sources: [...sources],
25749
- corroborations: corroborations(surv) + corroborations(dup) + 1
25750
- },
25751
- cumulativeHits: (surv.cumulativeHits ?? 0) + (dup.cumulativeHits ?? 0),
25752
- lastUpdatedAt: ts
25753
- });
25754
- for (const e of store2.outEdges(dup.id, REDIRECT_EDGES)) {
25755
- if (e.to === survivor.id) continue;
25756
- const id = `edge_${digest({ from: survivor.id, type: e.type, to: e.to })}`.slice(0, 24);
25757
- if (store2.getEdge(id)) continue;
25758
- const redirected = {
25759
- ...e,
25760
- id,
25761
- from: survivor.id,
25762
- createdAt: ts,
25763
- lastSeenAt: ts
25764
- };
25765
- store2.mergeEdge(redirected);
25766
- }
25767
- store2.updateNode(dup.id, {
25768
- attrs: { ...dup.attrs, mergedInto: survivor.id, resolvedAs: "duplicate", resolvedAt: ts },
25769
- lastUpdatedAt: ts
25770
- });
25771
- store2.closeNode(dup.id, ts);
25772
- }
26437
+ // ../../packages/local-graph/src/community.ts
26438
+ init_src2();
25773
26439
 
25774
26440
  // ../../packages/local-graph/src/tools.ts
25775
26441
  init_src();
@@ -25786,6 +26452,9 @@ function rankToolsForHandles(store2, limit = 5) {
25786
26452
  // ../../packages/local-graph/src/principle-sync.ts
25787
26453
  init_src2();
25788
26454
 
26455
+ // ../../packages/local-graph/src/mechanism-liveness.ts
26456
+ var STALL_MIN_SPAN_MS = 60 * 60 * 1e3;
26457
+
25789
26458
  // ../../packages/generalizer/src/generalizer.ts
25790
26459
  init_src2();
25791
26460
  init_src();
@@ -25905,7 +26574,164 @@ function promoteMotifs(store2, t) {
25905
26574
  }
25906
26575
 
25907
26576
  // ../../packages/generalizer/src/nightly.ts
25908
- function runNightlyPipeline(store2) {
26577
+ var FULL_RESCORE_EVERY = 12;
26578
+ var INCREMENTAL_REGION_MAX_FRACTION = 0.2;
26579
+ var INCREMENTAL_HOPS = 3;
26580
+ function runGraphRescore(store2, opts = {}) {
26581
+ const lastRescoreAt = Number(store2.getMeta?.("lastRescoreAt") ?? 0);
26582
+ const sinceFull = Number(store2.getMeta?.("rescoresSinceFull") ?? 0);
26583
+ const incrementalCapable = !opts.forceFull && lastRescoreAt > 0 && sinceFull < FULL_RESCORE_EVERY - 1 && !!store2.getMeta && !!store2.setMeta && !!store2.dirtyNodeIdsSince && !!store2.edgeEndpointsTouchedSince && !!store2.outEdgesForMany && !!store2.inEdgesForMany && !!store2.ranksForMany && !!store2.landmarkSweepRows;
26584
+ if (incrementalCapable) {
26585
+ const started = Date.now();
26586
+ const inc = tryIncrementalRescore(store2, lastRescoreAt, started);
26587
+ if (inc) {
26588
+ store2.setMeta("lastRescoreAt", String(started));
26589
+ store2.setMeta("rescoresSinceFull", String(sinceFull + 1));
26590
+ return inc;
26591
+ }
26592
+ }
26593
+ const report = runFullRescore(store2);
26594
+ store2.setMeta?.("lastRescoreAt", String(report.startedAt));
26595
+ store2.setMeta?.("rescoresSinceFull", "0");
26596
+ store2.setMeta?.("danglingRankShare", String(report.danglingRank));
26597
+ const { startedAt: _drop, danglingRank: _drop2, ...rest } = report;
26598
+ return rest;
26599
+ }
26600
+ function tryIncrementalRescore(store2, lastRescoreAt, started) {
26601
+ const allowedTypes = new Set(pagerankEdgeTypes());
26602
+ const liveN = store2.nodeCount();
26603
+ const cap = Math.max(1e3, Math.floor(liveN * INCREMENTAL_REGION_MAX_FRACTION));
26604
+ const region = new Set(store2.dirtyNodeIdsSince(lastRescoreAt));
26605
+ for (const e of store2.edgeEndpointsTouchedSince(lastRescoreAt)) {
26606
+ region.add(e.from);
26607
+ region.add(e.to);
26608
+ }
26609
+ if (region.size > cap) return null;
26610
+ let frontier = [...region];
26611
+ for (let hop = 0; hop < INCREMENTAL_HOPS && frontier.length > 0; hop++) {
26612
+ const next = [];
26613
+ for (const e of store2.outEdgesForMany(frontier)) {
26614
+ if (!allowedTypes.has(e.type)) continue;
26615
+ if (!region.has(e.to)) {
26616
+ region.add(e.to);
26617
+ next.push(e.to);
26618
+ }
26619
+ }
26620
+ if (region.size > cap) return null;
26621
+ frontier = next;
26622
+ }
26623
+ const rank0 = store2.ranksForMany([...region]);
26624
+ const regionIds = [...rank0.keys()];
26625
+ if (regionIds.length === 0) {
26626
+ return {
26627
+ scoredNodes: 0,
26628
+ iterations: 0,
26629
+ converged: true,
26630
+ landmarks: 0,
26631
+ communities: 0,
26632
+ motifsPromoted: 0,
26633
+ techniques: 0,
26634
+ antipatterns: 0,
26635
+ pageRankWritten: 0,
26636
+ landmarkFlips: 0,
26637
+ mode: "incremental",
26638
+ regionSize: 0,
26639
+ durationMs: Date.now() - started
26640
+ };
26641
+ }
26642
+ const inRegion = new Set(regionIds);
26643
+ const out2 = /* @__PURE__ */ new Map();
26644
+ const outSum = /* @__PURE__ */ new Map();
26645
+ for (const e of store2.outEdgesForMany(regionIds)) {
26646
+ if (!allowedTypes.has(e.type)) continue;
26647
+ const w = EDGE_WEIGHT[e.type] ?? 1;
26648
+ if (w <= 0) continue;
26649
+ outSum.set(e.from, (outSum.get(e.from) ?? 0) + w);
26650
+ if (!inRegion.has(e.to)) continue;
26651
+ const l = out2.get(e.from);
26652
+ if (l) l.push({ to: e.to, weight: w });
26653
+ else out2.set(e.from, [{ to: e.to, weight: w }]);
26654
+ }
26655
+ const boundaryEdges = store2.inEdgesForMany(regionIds).filter((e) => allowedTypes.has(e.type) && !inRegion.has(e.from) && (EDGE_WEIGHT[e.type] ?? 1) > 0);
26656
+ const boundarySources = [...new Set(boundaryEdges.map((e) => e.from))];
26657
+ if (boundarySources.length > cap) return null;
26658
+ const boundaryRanks = store2.ranksForMany(boundarySources);
26659
+ const boundaryOutSum = /* @__PURE__ */ new Map();
26660
+ for (const e of store2.outEdgesForMany(boundarySources)) {
26661
+ if (!allowedTypes.has(e.type)) continue;
26662
+ const w = EDGE_WEIGHT[e.type] ?? 1;
26663
+ if (w > 0) boundaryOutSum.set(e.from, (boundaryOutSum.get(e.from) ?? 0) + w);
26664
+ }
26665
+ const boundaryInflow = /* @__PURE__ */ new Map();
26666
+ for (const e of boundaryEdges) {
26667
+ const r = boundaryRanks.get(e.from);
26668
+ const os2 = boundaryOutSum.get(e.from);
26669
+ if (r === void 0 || !os2) continue;
26670
+ const w = EDGE_WEIGHT[e.type] ?? 1;
26671
+ boundaryInflow.set(e.to, (boundaryInflow.get(e.to) ?? 0) + r * w / os2);
26672
+ }
26673
+ const globalDangling = Number(store2.getMeta("danglingRankShare") ?? 0);
26674
+ let regionDangling = 0;
26675
+ for (const id of regionIds) {
26676
+ if ((outSum.get(id) ?? 0) <= 0) regionDangling += rank0.get(id) ?? 0;
26677
+ }
26678
+ const result = pagerankLocal({
26679
+ regionIds,
26680
+ rank0,
26681
+ out: out2,
26682
+ outSum,
26683
+ boundaryInflow,
26684
+ globalN: liveN,
26685
+ externalDanglingRank: Math.max(0, globalDangling - regionDangling),
26686
+ damping: 0.85,
26687
+ tolerance: 1e-6,
26688
+ maxIterations: 100
26689
+ });
26690
+ let pageRankWritten = 0;
26691
+ store2.transaction(() => {
26692
+ for (const [id, score2] of result.scores) {
26693
+ if (Math.abs(score2 - (rank0.get(id) ?? 0)) < 1e-9) continue;
26694
+ store2.setPageRank(id, score2);
26695
+ pageRankWritten++;
26696
+ }
26697
+ });
26698
+ const sweep = store2.landmarkSweepRows();
26699
+ const candidates = /* @__PURE__ */ new Map();
26700
+ for (const row of sweep) {
26701
+ if (row.label === "Pattern" || row.label === "RootCause") {
26702
+ candidates.set(row.id, result.scores.get(row.id) ?? row.pageRank);
26703
+ }
26704
+ }
26705
+ const want = markLandmarks(candidates, 0.1);
26706
+ for (const row of sweep) if (row.memoryTier === "persistent") want.add(row.id);
26707
+ let landmarkFlips = 0;
26708
+ store2.transaction(() => {
26709
+ for (const row of sweep) {
26710
+ if (row.extractionSource === "bko-inferred") continue;
26711
+ const should = want.has(row.id);
26712
+ if (row.isLandmark === should) continue;
26713
+ store2.setLandmark(row.id, should);
26714
+ landmarkFlips++;
26715
+ }
26716
+ });
26717
+ return {
26718
+ scoredNodes: regionIds.length,
26719
+ iterations: result.iterations,
26720
+ converged: result.converged,
26721
+ landmarks: want.size,
26722
+ communities: 0,
26723
+ // deferred to the full backstop — see mode docs
26724
+ motifsPromoted: 0,
26725
+ techniques: 0,
26726
+ antipatterns: 0,
26727
+ pageRankWritten,
26728
+ landmarkFlips,
26729
+ mode: "incremental",
26730
+ regionSize: regionIds.length,
26731
+ durationMs: Date.now() - started
26732
+ };
26733
+ }
26734
+ function runFullRescore(store2) {
25909
26735
  const started = Date.now();
25910
26736
  const allowedTypes = new Set(pagerankEdgeTypes());
25911
26737
  const nodeIds = [];
@@ -25931,10 +26757,12 @@ function runNightlyPipeline(store2) {
25931
26757
  maxIterations: 100
25932
26758
  });
25933
26759
  const scored = result.scores.size;
26760
+ let pageRankWritten = 0;
25934
26761
  store2.transaction(() => {
25935
26762
  for (const [id, score2] of result.scores) {
25936
26763
  if (Math.abs(score2 - (meta3.get(id)?.pageRank ?? 0)) < 1e-9) continue;
25937
26764
  store2.setPageRank(id, score2);
26765
+ pageRankWritten++;
25938
26766
  }
25939
26767
  });
25940
26768
  const landmarkCandidates = /* @__PURE__ */ new Map();
@@ -25949,11 +26777,13 @@ function runNightlyPipeline(store2) {
25949
26777
  for (const id of nodeIds) {
25950
26778
  if (meta3.get(id)?.memoryTier === "persistent") allLandmarks.add(id);
25951
26779
  }
26780
+ let landmarkFlips = 0;
25952
26781
  store2.transaction(() => {
25953
26782
  for (const id of nodeIds) {
25954
26783
  const want = allLandmarks.has(id);
25955
26784
  if ((meta3.get(id)?.isLandmark ?? false) === want) continue;
25956
26785
  store2.setLandmark(id, want);
26786
+ landmarkFlips++;
25957
26787
  }
25958
26788
  });
25959
26789
  const MOTIF_LABELS = /* @__PURE__ */ new Set(["Pattern", "Technique", "AntiPattern"]);
@@ -25988,8 +26818,6 @@ function runNightlyPipeline(store2) {
25988
26818
  for (const [id, c] of comm.community) store2.updateNode(id, { community: c });
25989
26819
  });
25990
26820
  const motifs = promoteMotifs(store2, started);
25991
- const designResolved = resolveDesignProblems(store2, started);
25992
- const cry = crystallize(store2, { ts: started });
25993
26821
  return {
25994
26822
  scoredNodes: scored,
25995
26823
  iterations: result.iterations,
@@ -25999,15 +26827,61 @@ function runNightlyPipeline(store2) {
25999
26827
  motifsPromoted: motifs.promoted,
26000
26828
  techniques: motifs.techniques,
26001
26829
  antipatterns: motifs.antipatterns,
26002
- skillsInduced: 0,
26003
- // skills are cloud-induced now (see above)
26004
- skillsRefreshed: 0,
26830
+ pageRankWritten,
26831
+ landmarkFlips,
26832
+ mode: "full",
26833
+ regionSize: 0,
26834
+ startedAt: started,
26835
+ danglingRank: result.danglingRank,
26836
+ durationMs: Date.now() - started
26837
+ };
26838
+ }
26839
+ function runSemanticMaintenance(store2) {
26840
+ const started = Date.now();
26841
+ reopenAutoClosedProblems(store2, started);
26842
+ const revisits = clearAnsweredRevisits(store2, started);
26843
+ const fixCandidates = clearSettledFixCandidates(store2, started);
26844
+ const designResolved = markFixCandidates(store2, started);
26845
+ const cry = crystallize(store2, { ts: started });
26846
+ return {
26005
26847
  designResolved,
26848
+ revisitsCleared: revisits.cleared,
26849
+ revisitsStanding: revisits.standing,
26850
+ fixCandidatesSettled: fixCandidates.answered + fixCandidates.ignored + fixCandidates.unsubstantiated,
26851
+ fixCandidates,
26006
26852
  claimsEvaluated: cry.evaluated,
26007
26853
  claimsDerived: cry.derived.length,
26008
26854
  durationMs: Date.now() - started
26009
26855
  };
26010
26856
  }
26857
+ function runNightlyPipeline(store2) {
26858
+ const started = Date.now();
26859
+ const rescore = runGraphRescore(store2);
26860
+ const semantic = runSemanticMaintenance(store2);
26861
+ return {
26862
+ scoredNodes: rescore.scoredNodes,
26863
+ iterations: rescore.iterations,
26864
+ converged: rescore.converged,
26865
+ landmarks: rescore.landmarks,
26866
+ communities: rescore.communities,
26867
+ motifsPromoted: rescore.motifsPromoted,
26868
+ techniques: rescore.techniques,
26869
+ antipatterns: rescore.antipatterns,
26870
+ skillsInduced: 0,
26871
+ // skills are cloud-induced now (see above)
26872
+ skillsRefreshed: 0,
26873
+ pageRankWritten: rescore.pageRankWritten,
26874
+ landmarkFlips: rescore.landmarkFlips,
26875
+ mode: rescore.mode,
26876
+ regionSize: rescore.regionSize,
26877
+ designResolved: semantic.designResolved,
26878
+ revisitsCleared: semantic.revisitsCleared,
26879
+ fixCandidatesSettled: semantic.fixCandidatesSettled,
26880
+ claimsEvaluated: semantic.claimsEvaluated,
26881
+ claimsDerived: semantic.claimsDerived,
26882
+ durationMs: Date.now() - started
26883
+ };
26884
+ }
26011
26885
  function codeAnchorProjection(store2, semanticIds, opts = {}) {
26012
26886
  const anchorToNodes = /* @__PURE__ */ new Map();
26013
26887
  for (const id of semanticIds) {
@@ -26052,12 +26926,14 @@ var AGENTS_POINTER_BODY = [
26052
26926
  init_src2();
26053
26927
  function buildSnapshot(opts) {
26054
26928
  const problems = opts.store.findNodesByLabel("Problem").filter((p) => p.attrs["mergedInto"] === void 0);
26055
- const allProblems = problems.filter((p) => p.attrs["resolvedAt"] == null);
26929
+ const stillOpen = problems.filter((p) => p.attrs["resolvedAt"] == null);
26930
+ const allProblems = stillOpen.filter((p) => !isConstraintProblem(p));
26056
26931
  allProblems.sort((a, b) => b.lastUpdatedAt - a.lastUpdatedAt);
26057
26932
  const recent = allProblems.slice(0, 8).map((p) => ({
26058
26933
  node: p,
26059
26934
  anchors: opts.store.outEdges(p.id, ["MANIFESTED_IN", "EVIDENCED_BY"])
26060
26935
  }));
26936
+ const recentConstraints = stillOpen.filter((p) => isConstraintProblem(p)).sort((a, b) => b.lastUpdatedAt - a.lastUpdatedAt).slice(0, 3);
26061
26937
  const recentResolved = problems.filter((p) => p.attrs["resolvedAt"] != null && p.attrs["resolvedAs"] == null).sort((a, b) => Number(b.attrs["resolvedAt"] ?? 0) - Number(a.attrs["resolvedAt"] ?? 0)).slice(0, 4).map((p) => {
26062
26938
  const solEdge = opts.store.outEdges(p.id, ["SOLVED_BY"])[0];
26063
26939
  const solution = solEdge ? opts.store.getNode(solEdge.to) ?? void 0 : void 0;
@@ -26085,10 +26961,13 @@ function buildSnapshot(opts) {
26085
26961
  episodeId,
26086
26962
  problems: problems2
26087
26963
  }));
26088
- const needsRevisit = listNeedsRevisit(
26089
- opts.store,
26090
- (opts.now ?? /* @__PURE__ */ new Date()).getTime()
26091
- ).slice(0, 10);
26964
+ const revisitSeen = /* @__PURE__ */ new Set();
26965
+ const needsRevisit = listNeedsRevisit(opts.store, (opts.now ?? /* @__PURE__ */ new Date()).getTime()).filter((r) => {
26966
+ const key = `${r.label}:${r.description.trim().toLowerCase()}`;
26967
+ if (revisitSeen.has(key)) return false;
26968
+ revisitSeen.add(key);
26969
+ return true;
26970
+ }).slice(0, 5);
26092
26971
  const norm = (x) => x.toLowerCase().replace(/[^a-z0-9]+/g, "");
26093
26972
  const pkgBase = (x) => {
26094
26973
  const at = x.lastIndexOf("@");
@@ -26124,7 +27003,9 @@ function buildSnapshot(opts) {
26124
27003
  profileContext,
26125
27004
  recentProblems: recent,
26126
27005
  recentResolved,
27006
+ recentConstraints,
26127
27007
  ...causalNudge ? { causalNudge } : {},
27008
+ ...opts.selfCiteSkips && opts.selfCiteSkips > 0 ? { selfCiteSkips: opts.selfCiteSkips } : {},
26128
27009
  ...domainNudge ? { domainNudge } : {},
26129
27010
  motifs,
26130
27011
  reviewCount: opts.reviewCount,
@@ -26175,10 +27056,16 @@ function sliceForFile(store2, relPath) {
26175
27056
  }
26176
27057
  const fp = priorsForFile(store2, relPath);
26177
27058
  const priors = fp ? {
26178
- openProblems: fp.openProblems.slice(0, 3).map((p) => ({ id: p.id, description: p.description })),
27059
+ openProblems: fp.openProblems.slice(0, 3).map((p) => ({
27060
+ id: p.id,
27061
+ description: p.description,
27062
+ ...typeof p.attrs["fixCandidateFile"] === "string" ? { fixCandidateFile: p.attrs["fixCandidateFile"] } : {}
27063
+ })),
27064
+ constraints: fp.constraints.slice(0, 2).map((c) => ({ id: c.id, description: c.description })),
27065
+ resolvedProblems: fp.resolvedProblems.slice(0, 3).map((p) => ({ id: p.id, description: p.description })),
26179
27066
  related: fp.related.slice(0, 4).map((n) => ({ id: n.id, label: n.label, description: n.description })),
26180
27067
  solutionsByProblem: Object.fromEntries(
26181
- fp.openProblems.slice(0, 3).map((p) => [
27068
+ [...fp.openProblems.slice(0, 3), ...fp.resolvedProblems.slice(0, 3)].map((p) => [
26182
27069
  p.id,
26183
27070
  (fp.solutionsByProblem.get(p.id) ?? []).slice(0, 4).map((s) => ({ id: s.id, description: s.description }))
26184
27071
  ])
@@ -26286,9 +27173,15 @@ function* walkSource(dir) {
26286
27173
  function listSourceFiles(root) {
26287
27174
  return gitSourceFiles(root) ?? walkSource(root);
26288
27175
  }
26289
- function findStaleFiles(store2, rootPath, workspaceId) {
27176
+ var SCAN_YIELD_EVERY = 100;
27177
+ var LIVENESS_CHUNK = 4e3;
27178
+ async function findStaleFiles(store2, rootPath, workspaceId) {
26290
27179
  const stale = [];
27180
+ const pending = [];
27181
+ const allTargets = [];
27182
+ let scanned = 0;
26291
27183
  for (const abs of listSourceFiles(rootPath)) {
27184
+ if (++scanned % SCAN_YIELD_EVERY === 0) await new Promise((r) => setImmediate(r));
26292
27185
  let mtimeMs;
26293
27186
  try {
26294
27187
  mtimeMs = statSync2(abs).mtimeMs;
@@ -26299,32 +27192,52 @@ function findStaleFiles(store2, rootPath, workspaceId) {
26299
27192
  const fnode = store2.getNode(fileNodeId(workspaceId, rel));
26300
27193
  if (!fnode) {
26301
27194
  stale.push(abs);
27195
+ } else if ((fnode.validTo ?? null) !== null) {
27196
+ stale.push(abs);
26302
27197
  } else if (fnode.lastUpdatedAt < mtimeMs) {
26303
27198
  stale.push(abs);
26304
27199
  } else {
26305
27200
  const edges = store2.outEdges(fnode.id, ["DEFINES", "CONTAINS"]);
26306
27201
  if (edges.length === 0) {
26307
27202
  stale.push(abs);
26308
- } else if (edges.some((e) => !isLive(store2.getNode(e.to)))) {
26309
- stale.push(abs);
27203
+ } else {
27204
+ const targets = edges.map((e) => e.to);
27205
+ pending.push({ abs, targets });
27206
+ allTargets.push(...targets);
26310
27207
  }
26311
27208
  }
26312
27209
  }
27210
+ const live = /* @__PURE__ */ new Set();
27211
+ for (let i2 = 0; i2 < allTargets.length; i2 += LIVENESS_CHUNK) {
27212
+ for (const id of store2.liveNodeIds(allTargets.slice(i2, i2 + LIVENESS_CHUNK))) live.add(id);
27213
+ if (i2 + LIVENESS_CHUNK < allTargets.length) await new Promise((r) => setImmediate(r));
27214
+ }
27215
+ for (const { abs, targets } of pending) {
27216
+ if (targets.some((id) => !live.has(id))) stale.push(abs);
27217
+ }
26313
27218
  return stale;
26314
27219
  }
26315
- function isLive(n) {
26316
- return n != null && (n.validTo ?? null) === null;
26317
- }
26318
27220
  async function reconcileStaleFiles(store2, rootPath, workspaceId) {
26319
- const stale = findStaleFiles(store2, rootPath, workspaceId);
27221
+ const stale = await findStaleFiles(store2, rootPath, workspaceId);
26320
27222
  if (stale.length === 0) return 0;
26321
27223
  let total = 0;
27224
+ let failedBatches = 0;
26322
27225
  const BATCH = 20;
26323
27226
  for (let i2 = 0; i2 < stale.length; i2 += BATCH) {
26324
- const r = await incrementalReindex(store2, rootPath, workspaceId, stale.slice(i2, i2 + BATCH));
26325
- total += r.filesReindexed;
27227
+ try {
27228
+ const r = await incrementalReindex(store2, rootPath, workspaceId, stale.slice(i2, i2 + BATCH));
27229
+ total += r.filesReindexed;
27230
+ } catch (err2) {
27231
+ failedBatches++;
27232
+ console.warn(
27233
+ `[errata] reconcile: batch ${i2 / BATCH + 1} failed (${stale.slice(i2, i2 + BATCH).length} file(s) skipped): ${err2 instanceof Error ? err2.message : err2}`
27234
+ );
27235
+ }
26326
27236
  if (i2 + BATCH < stale.length) await new Promise((res) => setImmediate(res));
26327
27237
  }
27238
+ if (failedBatches > 0) {
27239
+ console.warn(`[errata] reconcile: ${failedBatches} batch(es) failed; ${total} file(s) reindexed`);
27240
+ }
26328
27241
  return total;
26329
27242
  }
26330
27243
 
@@ -26377,6 +27290,7 @@ function runNightly() {
26377
27290
  const a = backfillLegacyAnchors(store, Date.now());
26378
27291
  anchorsDemoted = a.demotedEdges;
26379
27292
  resolutionsSuspect = a.suspects.length;
27293
+ repairLegacyAnchorsFromStatement(store, Date.now());
26380
27294
  } catch {
26381
27295
  }
26382
27296
  const report = runNightlyPipeline(store);