@indy2kro/agentenv 1.0.1 → 1.1.0

package/dist/adapters/rtk-delegation.js.map

@@ -1 +1 @@
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+{"version":3,"file":"rtk-delegation.js","sourceRoot":"","sources":["../../src/adapters/rtk-delegation.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,OAAO,KAAK,EAAE,MAAM,IAAI,CAAC;AACzB,OAAO,KAAK,IAAI,MAAM,MAAM,CAAC;AAC7B,OAAO,EAAE,WAAW,EAA0C,MAAM,WAAW,CAAC;AAChF,OAAO,EAAE,gBAAgB,EAAE,MAAM,aAAa,CAAC;AAE/C,OAAO,EACL,sBAAsB,EACtB,oBAAoB,EACpB,4BAA4B,EAC5B,cAAc,EACd,UAAU,GACX,MAAM,qBAAqB,CAAC;AAkB7B,MAAM,OAAO,oBAAqB,SAAQ,WAAW;IAGnD,YAAY,MAAqB,EAAE,IAA0B;QAC3D,KAAK,CAAC,MAAM,CAAC,CAAC;QACd,IAAI,CAAC,IAAI,GAAG,IAAI,CAAC;IACnB,CAAC;IAED,OAAO;QACL,OAAO,IAAI,CAAC,IAAI,CAAC,KAAK,CAAC;IACzB,CAAC;IAED,YAAY;QACV,OAAO,IAAI,CAAC,IAAI,CAAC,SAAS,CAAC;IAC7B,CAAC;IAED,WAAW;QACT,OAAO,gBAAgB,CAAC,IAAI,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;IAC9C,CAAC;IAED,KAAK,CAAC,UAAU;QACd,MAAM,MAAM,GAAkB;YAC5B,OAAO,EAAE,IAAI;YACb,OAAO,EAAE,EAAE;YACX,YAAY,EAAE,EAAE;YAChB,aAAa,EAAE,EAAE;YACjB,MAAM,EAAE,EAAE;SACX,CAAC;QAEF,IAAI,CAAC,IAAI,CAAC,MAAM,CAAC,OAAO,EAAE,CAAC;YACzB,MAAM,CAAC,OAAO,GAAG,GAAG,IAAI,CAAC,IAAI,CAAC,KAAK,sBAAsB,CAAC;YAC1D,OAAO,MAAM,CAAC;QAChB,CAAC;QAED,IAAI,CAAC;YACH,KAAK,MAAM,GAAG,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,SAAS,EAAE,GAAG,CAAC,IAAI,CAAC,IAAI,CAAC,eAAe,IAAI,EAAE,CAAC,CAAC,EAAE,CAAC;gBAC9E,IAAI,CAAC,EAAE,CAAC,UAAU,CAAC,GAAG,CAAC,EAAE,CAAC;oBACxB,EAAE,CAAC,SAAS,CAAC,GAAG,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;oBACvC,MAAM,CAAC,YAAY,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;gBAChC,CAAC;YACH,CAAC;QACH,CAAC;QAAC,OAAO,GAAG,EAAE,CAAC;YACb,MAAM,CAAC,OAAO,GAAG,KAAK,CAAC;YACvB,MAAM,CAAC,MAAM,CAAC,IAAI,CAChB,sCAAsC,GAAG,YAAY,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE,CACzF,CAAC;QACJ,CAAC;QAED,IAAI,IAAI,CAAC,MAAM,CAAC,UAAU,EAAE,CAAC;YAC3B,MAAM,UAAU,GAAG,MAAM,IAAI,CAAC,cAAc,EAAE,CAAC;YAC/C,IAAI,UAAU,CAAC,OAAO,EAAE,CAAC;gBACvB,MAAM,CAAC,YAAY,CAAC,IAAI,CAAC,GAAG,UAAU,CAAC,YAAY,CAAC,CAAC;gBACrD,MAAM,CAAC,aAAa,CAAC,IAAI,CAAC,GAAG,UAAU,CAAC,aAAa,CAAC,CAAC;gBACvD,MAAM,CAAC,OAAO,GAAG,UAAU,CAAC,OAAO,CAAC;YACtC,CAAC;iBAAM,CAAC;gBACN,MAAM,CAAC,OAAO,GAAG,KAAK,CAAC;gBACvB,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,UAAU,CAAC,MAAM,CAAC,CAAC;YAC3C,CAAC;QACH,CAAC;aAAM,CAAC;YACN,MAAM,CAAC,OAAO,GAAG,oBAAoB,IAAI,CAAC,IAAI,CAAC,KAAK,mBAAmB,CAAC;QAC1E,CAAC;QAED,OAAO,MAAM,CAAC;IAChB,CAAC;IAED,KAAK,CAAC,cAAc;QAClB,MAAM,MAAM,GAAkB;YAC5B,OAAO,EAAE,IAAI;YACb,OAAO,EAAE,EAAE;YACX,YAAY,EAAE,EAAE;YAChB,aAAa,EAAE,EAAE;YACjB,MAAM,EAAE,EAAE;SACX,CAAC;QAEF,IAAI,CAAC,IAAI,CAAC,MAAM,CAAC,OAAO,EAAE,CAAC;YACzB,MAAM,CAAC,OAAO,GAAG,GAAG,IAAI,CAAC,IAAI,CAAC,KAAK,sBAAsB,CAAC;YAC1D,OAAO,MAAM,CAAC;QAChB,CAAC;QAED,uEAAuE;QACvE,sEAAsE;QACtE,uEAAuE;QACvE,wEAAwE;QACxE,qEAAqE;QACrE,YAAY;QACZ,IAAI,sBAAsB,CAAC,IAAI,CAAC,IAAI,CAAC,QAAQ,CAAC,EAAE,CAAC;YAC/C,MAAM,iBAAiB,GAAG,IAAI,CAAC,MAAM,CAAC,oBAAoB,IAAI,oBAAoB,CAAC;YACnF,MAAM,EAAE,OAAO,EAAE,GAAG,iBAAiB,CAAC,IAAI,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC;YAC3D,IAAI,4BAA4B,CAAC,IAAI,CAAC,IAAI,CAAC,QAAQ,EAAE,OAAO,CAAC,KAAK,KAAK,EAAE,CAAC;gBACxE,MAAM,CAAC,OAAO,GAAG,KAAK,CAAC;gBACvB,MAAM,CAAC,MAAM,CAAC,IAAI,CAChB,OAAO,OAAO,IAAI,sBAAsB,0BAA0B,IAAI,CAAC,IAAI,CAAC,QAAQ,uBAAuB,CAC5G,CAAC;gBACF,OAAO,MAAM,CAAC;YAChB,CAAC;QACH,CAAC;QAED,MAAM,YAAY,GAAG,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,MAAM,CAAC,OAAO,EAAE,IAAI,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC;QAC5E,MAAM,OAAO,GAAG,EAAE,CAAC,UAAU,CAAC,YAAY,CAAC,CAAC;QAC5C,MAAM,GAAG,GAAG,cAAc,CAAC,IAAI,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,QAAQ,EAAE,IAAI,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC;QACzF,IAAI,GAAG,CAAC,OAAO,EAAE,CAAC;YAChB,IAAI,CAAC,OAAO,IAAI,EAAE,CAAC,UAAU,CAAC,YAAY,CAAC;gBAAE,MAAM,CAAC,YAAY,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC;YACpF,MAAM,CAAC,OAAO,GAAG,UAAU,CAAC,GAAG,CAAC,CAAC;QACnC,CAAC;aAAM,CAAC;YACN,MAAM,CAAC,OAAO,GAAG,KAAK,CAAC;YACvB,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,OAAO,GAAG,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC,CAAC,KAAK,GAAG,CAAC,MAAM,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;QACjF,CAAC;QAED,OAAO,MAAM,CAAC;IAChB,CAAC;IAED,KAAK,CAAC,OAAO;QACX,OAAO;YACL,OAAO,EAAE,IAAI;YACb,OAAO,EAAE,GAAG,IAAI,CAAC,IAAI,CAAC,KAAK,qBAAqB;YAChD,YAAY,EAAE,EAAE;YAChB,aAAa,EAAE,EAAE;YACjB,MAAM,EAAE,EAAE;SACX,CAAC;IACJ,CAAC;CACF"}

package/dist/adapters/vibe.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"vibe.d.ts","sourceRoot":"","sources":["../../src/adapters/vibe.ts"],"names":[],"mappings":"AAAA;;GAEG;AAGH,OAAO,EAAE,oBAAoB,EAAE,MAAM,qBAAqB,CAAC;AAC3D,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,WAAW,CAAC;AAG/C,qBAAa,WAAY,SAAQ,oBAAoB;gBACvC,MAAM,EAAE,aAAa;CAUlC"}
+{"version":3,"file":"vibe.d.ts","sourceRoot":"","sources":["../../src/adapters/vibe.ts"],"names":[],"mappings":"AAAA;;GAEG;AAGH,OAAO,EAAE,oBAAoB,EAAE,MAAM,qBAAqB,CAAC;AAC3D,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,WAAW,CAAC;AAI/C,qBAAa,WAAY,SAAQ,oBAAoB;gBACvC,MAAM,EAAE,aAAa;CASlC"}

package/dist/adapters/vibe.js

@@ -4,14 +4,14 @@
 import * as path from 'path';
 import { RtkDelegationAdapter } from './rtk-delegation.js';
 import { RTK_INIT_FLAGS } from '../toolchain/rtk.js';
+import { homeDir } from './agent-dirs.js';
 export class VibeAdapter extends RtkDelegationAdapter {
     constructor(config) {
-        const home = process.env.HOME || process.env.USERPROFILE || '';
         super(config, {
             agentKey: 'vibe',
             label: 'Mistral Vibe',
             rtkFlags: RTK_INIT_FLAGS.vibe,
-            configDir: path.join(home, '.vibe'),
+            configDir: path.join(homeDir(), '.vibe'),
             expectedFile: 'RTK.md',
         });
     }

package/dist/adapters/vibe.js.map

@@ -1 +1 @@
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+{"version":3,"file":"vibe.js","sourceRoot":"","sources":["../../src/adapters/vibe.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,KAAK,IAAI,MAAM,MAAM,CAAC;AAC7B,OAAO,EAAE,oBAAoB,EAAE,MAAM,qBAAqB,CAAC;AAE3D,OAAO,EAAE,cAAc,EAAE,MAAM,qBAAqB,CAAC;AACrD,OAAO,EAAE,OAAO,EAAE,MAAM,iBAAiB,CAAC;AAE1C,MAAM,OAAO,WAAY,SAAQ,oBAAoB;IACnD,YAAY,MAAqB;QAC/B,KAAK,CAAC,MAAM,EAAE;YACZ,QAAQ,EAAE,MAAM;YAChB,KAAK,EAAE,cAAc;YACrB,QAAQ,EAAE,cAAc,CAAC,IAAI;YAC7B,SAAS,EAAE,IAAI,CAAC,IAAI,CAAC,OAAO,EAAE,EAAE,OAAO,CAAC;YACxC,YAAY,EAAE,QAAQ;SACvB,CAAC,CAAC;IACL,CAAC;CACF"}

package/dist/adapters/windsurf.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"windsurf.d.ts","sourceRoot":"","sources":["../../src/adapters/windsurf.ts"],"names":[],"mappings":"AAAA;;GAEG;AAGH,OAAO,EAAE,oBAAoB,EAAE,MAAM,qBAAqB,CAAC;AAC3D,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,WAAW,CAAC;AAG/C,qBAAa,eAAgB,SAAQ,oBAAoB;gBAC3C,MAAM,EAAE,aAAa;CAUlC"}
+{"version":3,"file":"windsurf.d.ts","sourceRoot":"","sources":["../../src/adapters/windsurf.ts"],"names":[],"mappings":"AAAA;;GAEG;AAGH,OAAO,EAAE,oBAAoB,EAAE,MAAM,qBAAqB,CAAC;AAC3D,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,WAAW,CAAC;AAI/C,qBAAa,eAAgB,SAAQ,oBAAoB;gBAC3C,MAAM,EAAE,aAAa;CASlC"}

package/dist/adapters/windsurf.js

@@ -4,14 +4,14 @@
 import * as path from 'path';
 import { RtkDelegationAdapter } from './rtk-delegation.js';
 import { RTK_INIT_FLAGS } from '../toolchain/rtk.js';
+import { homeDir } from './agent-dirs.js';
 export class WindsurfAdapter extends RtkDelegationAdapter {
     constructor(config) {
-        const home = process.env.HOME || process.env.USERPROFILE || '';
         super(config, {
             agentKey: 'windsurf',
             label: 'Windsurf',
             rtkFlags: RTK_INIT_FLAGS.windsurf,
-            configDir: path.join(home, '.windsurf'),
+            configDir: path.join(homeDir(), '.windsurf'),
             expectedFile: 'RTK.md',
         });
     }

package/dist/adapters/windsurf.js.map

@@ -1 +1 @@
-{"version":3,"file":"windsurf.js","sourceRoot":"","sources":["../../src/adapters/windsurf.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,KAAK,IAAI,MAAM,MAAM,CAAC;AAC7B,OAAO,EAAE,oBAAoB,EAAE,MAAM,qBAAqB,CAAC;AAE3D,OAAO,EAAE,cAAc,EAAE,MAAM,qBAAqB,CAAC;AAErD,MAAM,OAAO,eAAgB,SAAQ,oBAAoB;IACvD,YAAY,MAAqB;QAC/B,MAAM,IAAI,GAAG,OAAO,CAAC,GAAG,CAAC,IAAI,IAAI,OAAO,CAAC,GAAG,CAAC,WAAW,IAAI,EAAE,CAAC;QAC/D,KAAK,CAAC,MAAM,EAAE;YACZ,QAAQ,EAAE,UAAU;YACpB,KAAK,EAAE,UAAU;YACjB,QAAQ,EAAE,cAAc,CAAC,QAAQ;YACjC,SAAS,EAAE,IAAI,CAAC,IAAI,CAAC,IAAI,EAAE,WAAW,CAAC;YACvC,YAAY,EAAE,QAAQ;SACvB,CAAC,CAAC;IACL,CAAC;CACF"}
+{"version":3,"file":"windsurf.js","sourceRoot":"","sources":["../../src/adapters/windsurf.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,KAAK,IAAI,MAAM,MAAM,CAAC;AAC7B,OAAO,EAAE,oBAAoB,EAAE,MAAM,qBAAqB,CAAC;AAE3D,OAAO,EAAE,cAAc,EAAE,MAAM,qBAAqB,CAAC;AACrD,OAAO,EAAE,OAAO,EAAE,MAAM,iBAAiB,CAAC;AAE1C,MAAM,OAAO,eAAgB,SAAQ,oBAAoB;IACvD,YAAY,MAAqB;QAC/B,KAAK,CAAC,MAAM,EAAE;YACZ,QAAQ,EAAE,UAAU;YACpB,KAAK,EAAE,UAAU;YACjB,QAAQ,EAAE,cAAc,CAAC,QAAQ;YACjC,SAAS,EAAE,IAAI,CAAC,IAAI,CAAC,OAAO,EAAE,EAAE,WAAW,CAAC;YAC5C,YAAY,EAAE,QAAQ;SACvB,CAAC,CAAC;IACL,CAAC;CACF"}

package/dist/cli/exit.d.ts

@@ -5,12 +5,23 @@ import type { Command, CommanderError } from 'commander';
  */
 export declare function exitCodeForCommanderError(error: CommanderError): 0 | 2;
 /**
- * Install the usage-error exit-code contract on a program and every registered
- * or future subcommand. MUST be called *after* `addCommand` for the program's
- * own override, and it subscribes to commander's `command:add` so any command
- * registered later (e.g. by an extension or a future release) inherits the
- * same contract instead of silently falling back to `process.exit(1)`. The
- * callback MUST rethrow: commander's `error()` calls `process.exit(1)`
+ * Install the usage-error exit-code contract on a program and every command
+ * already registered on it. MUST be called *after* every `addCommand()`, so
+ * the explicit loop below reaches them all. A command registered later via
+ * `.command(name)` (not `.addCommand()`) inherits it automatically —
+ * Commander's own `copyInheritedSettings()` copies the parent's exit
+ * callback onto it at creation time.
+ *
+ * This deliberately does NOT also listen for a `'command:add'` event: no
+ * such registration event exists in Commander. That string is only ever
+ * emitted as the *legacy* per-command completion event `command:${name}` —
+ * fired on the parent after a subcommand's action handler runs, with
+ * `(operands, unknown)` as its arguments — so a listener bound to the
+ * literal name `'command:add'` would silently misfire as soon as any
+ * command were named "add", handing `command.exitOverride()` an array
+ * instead of a Command and crashing every run of it.
+ *
+ * The callback MUST rethrow: commander's `error()` calls `process.exit(1)`
  * immediately after the override returns normally, which would clobber the
  * mapped code. Rethrowing lets `parseAsync()`'s rejection carry the error out
  * to the entrypoint, which then honors the already-set `process.exitCode`.

package/dist/cli/exit.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"exit.d.ts","sourceRoot":"","sources":["../../src/cli/exit.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,OAAO,EAAE,cAAc,EAAE,MAAM,WAAW,CAAC;AAEzD;;;GAGG;AACH,wBAAgB,yBAAyB,CAAC,KAAK,EAAE,cAAc,GAAG,CAAC,GAAG,CAAC,CAStE;AAED;;;;;;;;;;GAUG;AACH,wBAAgB,mBAAmB,CAAC,OAAO,EAAE,OAAO,GAAG,IAAI,CAQ1D"}
+{"version":3,"file":"exit.d.ts","sourceRoot":"","sources":["../../src/cli/exit.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,OAAO,EAAE,cAAc,EAAE,MAAM,WAAW,CAAC;AAEzD;;;GAGG;AACH,wBAAgB,yBAAyB,CAAC,KAAK,EAAE,cAAc,GAAG,CAAC,GAAG,CAAC,CAStE;AAED;;;;;;;;;;;;;;;;;;;;;GAqBG;AACH,wBAAgB,mBAAmB,CAAC,OAAO,EAAE,OAAO,GAAG,IAAI,CAO1D"}

package/dist/cli/exit.js

@@ -13,12 +13,23 @@ export function exitCodeForCommanderError(error) {
     }
 }
 /**
- * Install the usage-error exit-code contract on a program and every registered
- * or future subcommand. MUST be called *after* `addCommand` for the program's
- * own override, and it subscribes to commander's `command:add` so any command
- * registered later (e.g. by an extension or a future release) inherits the
- * same contract instead of silently falling back to `process.exit(1)`. The
- * callback MUST rethrow: commander's `error()` calls `process.exit(1)`
+ * Install the usage-error exit-code contract on a program and every command
+ * already registered on it. MUST be called *after* every `addCommand()`, so
+ * the explicit loop below reaches them all. A command registered later via
+ * `.command(name)` (not `.addCommand()`) inherits it automatically —
+ * Commander's own `copyInheritedSettings()` copies the parent's exit
+ * callback onto it at creation time.
+ *
+ * This deliberately does NOT also listen for a `'command:add'` event: no
+ * such registration event exists in Commander. That string is only ever
+ * emitted as the *legacy* per-command completion event `command:${name}` —
+ * fired on the parent after a subcommand's action handler runs, with
+ * `(operands, unknown)` as its arguments — so a listener bound to the
+ * literal name `'command:add'` would silently misfire as soon as any
+ * command were named "add", handing `command.exitOverride()` an array
+ * instead of a Command and crashing every run of it.
+ *
+ * The callback MUST rethrow: commander's `error()` calls `process.exit(1)`
  * immediately after the override returns normally, which would clobber the
  * mapped code. Rethrowing lets `parseAsync()`'s rejection carry the error out
  * to the entrypoint, which then honors the already-set `process.exitCode`.
@@ -29,7 +40,6 @@ export function installExitOverride(program) {
         throw error;
     };
     program.exitOverride(override);
-    program.on('command:add', (command) => command.exitOverride(override));
     for (const command of program.commands)
         command.exitOverride(override);
 }

package/dist/cli/exit.js.map

@@ -1 +1 @@
-{"version":3,"file":"exit.js","sourceRoot":"","sources":["../../src/cli/exit.ts"],"names":[],"mappings":"AAEA;;;GAGG;AACH,MAAM,UAAU,yBAAyB,CAAC,KAAqB;IAC7D,QAAQ,KAAK,CAAC,IAAI,EAAE,CAAC;QACnB,KAAK,yBAAyB,CAAC;QAC/B,KAAK,gBAAgB,CAAC;QACtB,KAAK,mBAAmB;YACtB,OAAO,CAAC,CAAC;QACX;YACE,OAAO,CAAC,CAAC;IACb,CAAC;AACH,CAAC;AAED;;;;;;;;;;GAUG;AACH,MAAM,UAAU,mBAAmB,CAAC,OAAgB;IAClD,MAAM,QAAQ,GAAG,CAAC,KAAqB,EAAQ,EAAE;QAC/C,OAAO,CAAC,QAAQ,GAAG,yBAAyB,CAAC,KAAK,CAAC,CAAC;QACpD,MAAM,KAAK,CAAC;IACd,CAAC,CAAC;IACF,OAAO,CAAC,YAAY,CAAC,QAAQ,CAAC,CAAC;IAC/B,OAAO,CAAC,EAAE,CAAC,aAAa,EAAE,CAAC,OAAgB,EAAE,EAAE,CAAC,OAAO,CAAC,YAAY,CAAC,QAAQ,CAAC,CAAC,CAAC;IAChF,KAAK,MAAM,OAAO,IAAI,OAAO,CAAC,QAAQ;QAAE,OAAO,CAAC,YAAY,CAAC,QAAQ,CAAC,CAAC;AACzE,CAAC"}
+{"version":3,"file":"exit.js","sourceRoot":"","sources":["../../src/cli/exit.ts"],"names":[],"mappings":"AAEA;;;GAGG;AACH,MAAM,UAAU,yBAAyB,CAAC,KAAqB;IAC7D,QAAQ,KAAK,CAAC,IAAI,EAAE,CAAC;QACnB,KAAK,yBAAyB,CAAC;QAC/B,KAAK,gBAAgB,CAAC;QACtB,KAAK,mBAAmB;YACtB,OAAO,CAAC,CAAC;QACX;YACE,OAAO,CAAC,CAAC;IACb,CAAC;AACH,CAAC;AAED;;;;;;;;;;;;;;;;;;;;;GAqBG;AACH,MAAM,UAAU,mBAAmB,CAAC,OAAgB;IAClD,MAAM,QAAQ,GAAG,CAAC,KAAqB,EAAQ,EAAE;QAC/C,OAAO,CAAC,QAAQ,GAAG,yBAAyB,CAAC,KAAK,CAAC,CAAC;QACpD,MAAM,KAAK,CAAC;IACd,CAAC,CAAC;IACF,OAAO,CAAC,YAAY,CAAC,QAAQ,CAAC,CAAC;IAC/B,KAAK,MAAM,OAAO,IAAI,OAAO,CAAC,QAAQ;QAAE,OAAO,CAAC,YAAY,CAAC,QAAQ,CAAC,CAAC;AACzE,CAAC"}

package/dist/commands/apply.d.ts

@@ -10,6 +10,59 @@ export interface ApplyResult {
     /** Wall-clock milliseconds the apply took, for the end-of-run timing line. */
     elapsedMs?: number;
 }
+export interface ApplyJsonResult {
+    success: boolean;
+    configPath: string;
+    baseDir: string;
+    messages: string[];
+    errors: string[];
+    warnings: string[];
+    elapsedMs?: number;
+}
+/** Shape `--json` prints for a completed (non-dry-run) apply. */
+export declare function buildApplyJsonResult(result: ApplyResult, extra: {
+    configPath: string;
+    baseDir: string;
+    warnings: string[];
+}): ApplyJsonResult;
+export interface DryRunFileStatus {
+    path: string;
+    status: 'create' | 'update' | 'unchanged' | 'error';
+    message?: string;
+}
+export interface DryRunTier0Agent {
+    agent: string;
+    needsFix: boolean;
+}
+export interface ApplyDryRunPlan {
+    configPath: string;
+    baseDir: string;
+    misePlan: {
+        miseTomlPath: string;
+        enabledToolCount: number;
+        status: 'create' | 'update' | 'unchanged';
+    };
+    generatedFiles: DryRunFileStatus[];
+    agents: string[];
+    rtkEnabled: boolean;
+    integrations: string[];
+    /** Per-agent Tier 0 shell-fix plan on Windows with Git Bash found; null everywhere else. */
+    tier0: DryRunTier0Agent[] | null;
+}
+export interface ApplyDryRunJsonResult extends ApplyDryRunPlan {
+    success: true;
+    dryRun: true;
+}
+/**
+ * Compute what `apply` would actually change, without writing anything:
+ * mise.toml's and each generated file's create/update/unchanged status (via
+ * planMarkerUpdate(), the same decision the real write path uses, so they
+ * can never disagree about what counts as a change) and, on Windows with
+ * Git Bash found, the per-agent Tier 0 shell-fix plan.
+ */
+export declare function buildApplyDryRunPlan(config: AgentenvConfig, baseDir: string, configPath: string, files: GeneratedFile[], agents: string[], integrations: Array<{
+    getName(): string;
+}>): ApplyDryRunPlan;
 export interface ApplyOptions {
     /**
      * Skip ensuring/installing via mise. Used by tests and any caller that
@@ -24,6 +77,11 @@ export interface ApplyOptions {
     skipPrereqMessage?: boolean;
     /** Injectable `rtk init` runner (tests pass a stub). */
     rtkInit?: RtkInitFn;
+    /**
+     * Overrides config.tier0.mode for this run (e.g. the `--shell-fix` CLI
+     * flag). Takes precedence over the config file when set.
+     */
+    tier0Mode?: 'auto' | 'always' | 'never';
     /** Injectable Superpowers adapter dependencies (tests pass a claude stub). */
     superpowersDeps?: SuperpowersAdapterDeps;
     /**
@@ -38,6 +96,25 @@ export interface ApplyOptions {
         onEnd?: () => void;
     };
 }
+/**
+ * Whether the Tier 0 Windows shell fix should actually write files this run,
+ * given its resolved mode and whether stdin is a TTY:
+ *  - "auto" (the long-standing default): only with a TTY.
+ *  - "always": always — this is what lets an AI agent (which never has a
+ *    TTY) running `apply`/`setup --yes` still get the fix applied.
+ *  - "never": never, even with a TTY.
+ */
+export declare function resolveTier0WriteFiles(mode: 'auto' | 'always' | 'never', isTTY: boolean): boolean;
+/**
+ * Whether step 3 (mise install/verify) should run: only when mise.toml was
+ * actually written (there'd be nothing to install otherwise) and
+ * --skip-mise-install wasn't passed. Deliberately NOT gated on the
+ * cumulative error count — a Tier 0 failure (step 1) is unrelated and must
+ * not also skip installing every configured tool: gating this on
+ * `errors.length === 0` meant one broken agent shell-fix write silently
+ * skipped tool installation entirely.
+ */
+export declare function shouldRunMiseInstall(miseTomlWritten: boolean, skipMiseInstall: boolean): boolean;
 /**
  * For user/global scope the instruction files are written into each enabled
  * agent's own user-level instruction file (e.g. ~/.claude/CLAUDE.md for

package/dist/commands/apply.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"apply.d.ts","sourceRoot":"","sources":["../../src/commands/apply.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAkBpC,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,qBAAqB,CAAC;AAE1D,OAAO,KAAK,EAAE,sBAAsB,EAAE,MAAM,0BAA0B,CAAC;AAMvE,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,yBAAyB,CAAC;AAG7D,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,qBAAqB,CAAC;AA2BrD,MAAM,WAAW,WAAW;IAC1B,OAAO,EAAE,OAAO,CAAC;IACjB,QAAQ,EAAE,MAAM,EAAE,CAAC;IACnB,MAAM,EAAE,MAAM,EAAE,CAAC;IACjB,8EAA8E;IAC9E,SAAS,CAAC,EAAE,MAAM,CAAC;CACpB;AAED,MAAM,WAAW,YAAY;IAC3B;;;OAGG;IACH,eAAe,CAAC,EAAE,OAAO,CAAC;IAC1B;;;;OAIG;IACH,iBAAiB,CAAC,EAAE,OAAO,CAAC;IAC5B,wDAAwD;IACxD,OAAO,CAAC,EAAE,SAAS,CAAC;IACpB,8EAA8E;IAC9E,eAAe,CAAC,EAAE,sBAAsB,CAAC;IACzC;;;;;OAKG;IACH,aAAa,CAAC,EAAE;QACd,OAAO,CAAC,EAAE,MAAM,IAAI,CAAC;QACrB,QAAQ,CAAC,EAAE,CAAC,KAAK,EAAE,MAAM,EAAE,MAAM,EAAE,QAAQ,GAAG,QAAQ,KAAK,IAAI,CAAC;QAChE,KAAK,CAAC,EAAE,MAAM,IAAI,CAAC;KACpB,CAAC;CACH;AAmCD;;;;;GAKG;AACH,wBAAgB,yBAAyB,CACvC,MAAM,EAAE,cAAc,EACtB,OAAO,EAAE,MAAM,EACf,OAAO,EAAE,YAAY,GACpB,aAAa,EAAE,CAOjB;AAED,iFAAiF;AACjF,wBAAsB,kBAAkB,CACtC,MAAM,EAAE,cAAc,EACtB,OAAO,EAAE,MAAM,EACf,OAAO,GAAE,YAAiB,GACzB,OAAO,CAAC,WAAW,CAAC,CAkItB;AAED,eAAO,MAAM,YAAY,SA+ErB,CAAC"}
+{"version":3,"file":"apply.d.ts","sourceRoot":"","sources":["../../src/commands/apply.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAwBpC,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,qBAAqB,CAAC;AAE1D,OAAO,KAAK,EAAE,sBAAsB,EAAE,MAAM,0BAA0B,CAAC;AAOvE,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,yBAAyB,CAAC;AAO7D,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,qBAAqB,CAAC;AA2BrD,MAAM,WAAW,WAAW;IAC1B,OAAO,EAAE,OAAO,CAAC;IACjB,QAAQ,EAAE,MAAM,EAAE,CAAC;IACnB,MAAM,EAAE,MAAM,EAAE,CAAC;IACjB,8EAA8E;IAC9E,SAAS,CAAC,EAAE,MAAM,CAAC;CACpB;AAED,MAAM,WAAW,eAAe;IAC9B,OAAO,EAAE,OAAO,CAAC;IACjB,UAAU,EAAE,MAAM,CAAC;IACnB,OAAO,EAAE,MAAM,CAAC;IAChB,QAAQ,EAAE,MAAM,EAAE,CAAC;IACnB,MAAM,EAAE,MAAM,EAAE,CAAC;IACjB,QAAQ,EAAE,MAAM,EAAE,CAAC;IACnB,SAAS,CAAC,EAAE,MAAM,CAAC;CACpB;AAED,iEAAiE;AACjE,wBAAgB,oBAAoB,CAClC,MAAM,EAAE,WAAW,EACnB,KAAK,EAAE;IAAE,UAAU,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,MAAM,CAAC;IAAC,QAAQ,EAAE,MAAM,EAAE,CAAA;CAAE,GACjE,eAAe,CAUjB;AAED,MAAM,WAAW,gBAAgB;IAC/B,IAAI,EAAE,MAAM,CAAC;IACb,MAAM,EAAE,QAAQ,GAAG,QAAQ,GAAG,WAAW,GAAG,OAAO,CAAC;IACpD,OAAO,CAAC,EAAE,MAAM,CAAC;CAClB;AAED,MAAM,WAAW,gBAAgB;IAC/B,KAAK,EAAE,MAAM,CAAC;IACd,QAAQ,EAAE,OAAO,CAAC;CACnB;AAED,MAAM,WAAW,eAAe;IAC9B,UAAU,EAAE,MAAM,CAAC;IACnB,OAAO,EAAE,MAAM,CAAC;IAChB,QAAQ,EAAE;QACR,YAAY,EAAE,MAAM,CAAC;QACrB,gBAAgB,EAAE,MAAM,CAAC;QACzB,MAAM,EAAE,QAAQ,GAAG,QAAQ,GAAG,WAAW,CAAC;KAC3C,CAAC;IACF,cAAc,EAAE,gBAAgB,EAAE,CAAC;IACnC,MAAM,EAAE,MAAM,EAAE,CAAC;IACjB,UAAU,EAAE,OAAO,CAAC;IACpB,YAAY,EAAE,MAAM,EAAE,CAAC;IACvB,4FAA4F;IAC5F,KAAK,EAAE,gBAAgB,EAAE,GAAG,IAAI,CAAC;CAClC;AAED,MAAM,WAAW,qBAAsB,SAAQ,eAAe;IAC5D,OAAO,EAAE,IAAI,CAAC;IACd,MAAM,EAAE,IAAI,CAAC;CACd;AAED;;;;;;GAMG;AACH,wBAAgB,oBAAoB,CAClC,MAAM,EAAE,cAAc,EACtB,OAAO,EAAE,MAAM,EACf,UAAU,EAAE,MAAM,EAClB,KAAK,EAAE,aAAa,EAAE,EACtB,MAAM,EAAE,MAAM,EAAE,EAChB,YAAY,EAAE,KAAK,CAAC;IAAE,OAAO,IAAI,MAAM,CAAA;CAAE,CAAC,GACzC,eAAe,CAwCjB;AAED,MAAM,WAAW,YAAY;IAC3B;;;OAGG;IACH,eAAe,CAAC,EAAE,OAAO,CAAC;IAC1B;;;;OAIG;IACH,iBAAiB,CAAC,EAAE,OAAO,CAAC;IAC5B,wDAAwD;IACxD,OAAO,CAAC,EAAE,SAAS,CAAC;IACpB;;;OAGG;IACH,SAAS,CAAC,EAAE,MAAM,GAAG,QAAQ,GAAG,OAAO,CAAC;IACxC,8EAA8E;IAC9E,eAAe,CAAC,EAAE,sBAAsB,CAAC;IACzC;;;;;OAKG;IACH,aAAa,CAAC,EAAE;QACd,OAAO,CAAC,EAAE,MAAM,IAAI,CAAC;QACrB,QAAQ,CAAC,EAAE,CAAC,KAAK,EAAE,MAAM,EAAE,MAAM,EAAE,QAAQ,GAAG,QAAQ,KAAK,IAAI,CAAC;QAChE,KAAK,CAAC,EAAE,MAAM,IAAI,CAAC;KACpB,CAAC;CACH;AAED;;;;;;;GAOG;AACH,wBAAgB,sBAAsB,CAAC,IAAI,EAAE,MAAM,GAAG,QAAQ,GAAG,OAAO,EAAE,KAAK,EAAE,OAAO,GAAG,OAAO,CAIjG;AAED;;;;;;;;GAQG;AACH,wBAAgB,oBAAoB,CAAC,eAAe,EAAE,OAAO,EAAE,eAAe,EAAE,OAAO,GAAG,OAAO,CAEhG;AAmCD;;;;;GAKG;AACH,wBAAgB,yBAAyB,CACvC,MAAM,EAAE,cAAc,EACtB,OAAO,EAAE,MAAM,EACf,OAAO,EAAE,YAAY,GACpB,aAAa,EAAE,CAOjB;AAED,iFAAiF;AACjF,wBAAsB,kBAAkB,CACtC,MAAM,EAAE,cAAc,EACtB,OAAO,EAAE,MAAM,EACf,OAAO,GAAE,YAAiB,GACzB,OAAO,CAAC,WAAW,CAAC,CAsItB;AAED,eAAO,MAAM,YAAY,SAqMtB,CAAC"}

package/dist/commands/apply.js

@@ -1,20 +1,104 @@
 import { Command } from 'commander';
+import * as fs from 'fs';
 import * as path from 'path';
 import { ClaudeCodeAdapter, CodexCliAdapter, CopilotAdapter, OpenCodeAdapter, GeminiCliAdapter, CursorAdapter, WindsurfAdapter, ClineAdapter, VibeAdapter, } from '../adapters/index.js';
 import { getEnabledAgents, loadConfig, validateConfig } from '../config/schema.js';
-import { resolveScopeDir } from '../config/scopes.js';
-import { findConfigPath } from '../config/scopes.js';
+import { configFilePath, findConfigPath, parseScopeFlag, resolveScopeDir, } from '../config/scopes.js';
 import { SuperpowersAdapter, integrationResultLines } from '../integrations/index.js';
-import { generateAgentsMd, generateInstructionFiles, updateWithMarkers, } from '../generate/agentsmd.js';
-import { fixShellConfiguration } from '../shell/detector.js';
+import { generateAgentsMd, generateInstructionFiles, planMarkerUpdate, updateWithMarkers, } from '../generate/agentsmd.js';
+import { checkAgentShellConfiguration, detectShell, fixShellConfiguration, } from '../shell/detector.js';
 import { shellFixStatePath } from '../shell/shell-fix-state.js';
 import { isUnsupportedRtkAgentError } from '../toolchain/rtk.js';
 import { ensureGlobalShimsDir, eulaPreflightHint, generateMiseToml, isMiseInstalled, miseActivationHint, miseInstallInstructions, miseInstallOutcome, platformUnsupportedHint, prereqMessage, runMiseInstall, saveMiseToml, toolAvailabilityLine, trustMiseToml, verifyHintNeeded, verifySummaryLine, verifyToolAvailability, } from '../toolchain/mise.js';
 import { normalizeOutput } from '../utils/output.js';
 import { colorizeLine, theme } from '../ui/theme.js';
-import { renderLogo } from '../ui/output.js';
+import { renderLogo, setQuietEnabled } from '../ui/output.js';
 import { printConfigPath, printMessages, printResult, reportValidation } from '../ui/report.js';
 import { withSpinner } from '../ui/spinner.js';
+/** Shape `--json` prints for a completed (non-dry-run) apply. */
+export function buildApplyJsonResult(result, extra) {
+    return {
+        success: result.success,
+        configPath: extra.configPath,
+        baseDir: extra.baseDir,
+        messages: result.messages,
+        errors: result.errors,
+        warnings: extra.warnings,
+        elapsedMs: result.elapsedMs,
+    };
+}
+/**
+ * Compute what `apply` would actually change, without writing anything:
+ * mise.toml's and each generated file's create/update/unchanged status (via
+ * planMarkerUpdate(), the same decision the real write path uses, so they
+ * can never disagree about what counts as a change) and, on Windows with
+ * Git Bash found, the per-agent Tier 0 shell-fix plan.
+ */
+export function buildApplyDryRunPlan(config, baseDir, configPath, files, agents, integrations) {
+    const enabledToolCount = Object.values(config.tools ?? {}).filter((on) => on === true).length;
+    const miseTomlPath = path.join(baseDir, 'mise.toml');
+    const miseContent = generateMiseToml(config, config.custom_tools ?? []);
+    const miseStatus = !fs.existsSync(miseTomlPath)
+        ? 'create'
+        : fs.readFileSync(miseTomlPath, 'utf-8') === miseContent
+            ? 'unchanged'
+            : 'update';
+    const markerStart = config.generate?.marker_start ?? '<!-- agentenv-managed-start -->';
+    const markerEnd = config.generate?.marker_end ?? '<!-- agentenv-managed-end -->';
+    const generatedFiles = files.map((file) => {
+        const plan = planMarkerUpdate(file.path, file.content, markerStart, markerEnd);
+        return plan.status === 'error'
+            ? { path: file.path, status: 'error', message: plan.message }
+            : { path: file.path, status: plan.status };
+    });
+    let tier0 = null;
+    if (process.platform === 'win32') {
+        const shell = detectShell();
+        if (shell.gitBashPath) {
+            tier0 = agents.map((agent) => ({
+                agent,
+                needsFix: checkAgentShellConfiguration(agent).needsFix,
+            }));
+        }
+    }
+    return {
+        configPath,
+        baseDir,
+        misePlan: { miseTomlPath, enabledToolCount, status: miseStatus },
+        generatedFiles,
+        agents,
+        rtkEnabled: config.rtk?.enabled === true,
+        integrations: integrations.map((integration) => integration.getName()),
+        tier0,
+    };
+}
+/**
+ * Whether the Tier 0 Windows shell fix should actually write files this run,
+ * given its resolved mode and whether stdin is a TTY:
+ *  - "auto" (the long-standing default): only with a TTY.
+ *  - "always": always — this is what lets an AI agent (which never has a
+ *    TTY) running `apply`/`setup --yes` still get the fix applied.
+ *  - "never": never, even with a TTY.
+ */
+export function resolveTier0WriteFiles(mode, isTTY) {
+    if (mode === 'always')
+        return true;
+    if (mode === 'never')
+        return false;
+    return isTTY;
+}
+/**
+ * Whether step 3 (mise install/verify) should run: only when mise.toml was
+ * actually written (there'd be nothing to install otherwise) and
+ * --skip-mise-install wasn't passed. Deliberately NOT gated on the
+ * cumulative error count — a Tier 0 failure (step 1) is unrelated and must
+ * not also skip installing every configured tool: gating this on
+ * `errors.length === 0` meant one broken agent shell-fix write silently
+ * skipped tool installation entirely.
+ */
+export function shouldRunMiseInstall(miseTomlWritten, skipMiseInstall) {
+    return miseTomlWritten && !skipMiseInstall;
+}
 function adaptersFor(config, baseDir, options) {
     const adapterConfig = {
         enabled: true,
@@ -88,8 +172,10 @@ export async function applyConfiguration(config, baseDir, options = {}) {
     // Step 1 — Tier 0 shell compatibility fix.
     if (config.tier0?.check_enabled !== false) {
         const enabledAgents = getEnabledAgents(config);
+        const tier0Mode = options.tier0Mode ?? config.tier0?.mode ?? 'auto';
+        const writeShellFixFiles = resolveTier0WriteFiles(tier0Mode, process.stdin.isTTY === true);
         try {
-            const tier0 = fixShellConfiguration(baseDir, enabledAgents, process.stdin.isTTY === true);
+            const tier0 = fixShellConfiguration(baseDir, enabledAgents, writeShellFixFiles);
             (tier0.success ? messages : errors).push(`Tier 0: ${tier0.message}`);
             if (tier0.results) {
                 for (const result of tier0.results) {
@@ -104,8 +190,10 @@ export async function applyConfiguration(config, baseDir, options = {}) {
     // Step 2 — mise.toml (declares the tools).
     const enabledToolCount = Object.values(config.tools ?? {}).filter((on) => on === true).length;
     const misePath = path.join(baseDir, 'mise.toml');
+    let miseTomlWritten = false;
     try {
         saveMiseToml(generateMiseToml(config, config.custom_tools ?? []), misePath);
+        miseTomlWritten = true;
         messages.push(`Tools: wrote ${misePath} (${enabledToolCount} enabled)`);
         const platformSkip = platformUnsupportedHint(config);
         if (platformSkip)
@@ -115,7 +203,7 @@ export async function applyConfiguration(config, baseDir, options = {}) {
         errors.push(`Unable to write ${misePath}: ${error instanceof Error ? error.message : String(error)}`);
     }
     // Step 3 — global shims config + trust + install + verify.
-    if (errors.length === 0 && !options.skipMiseInstall) {
+    if (shouldRunMiseInstall(miseTomlWritten, options.skipMiseInstall === true)) {
         const shims = ensureGlobalShimsDir(shellFixStatePath());
         (shims.success ? messages : errors).push(shims.message);
         const trust = trustMiseToml(misePath, baseDir);
@@ -193,58 +281,145 @@ export const applyCommand = new Command()
     .description('Non-interactive: read config and generate everything')
     .option('--skip-mise-install', 'skip mise install (files only; for CI/dry-run)')
     .option('--dry-run', 'show what would be written without changing anything')
-    .action(async (options) => {
+    .option('--shell-fix <mode>', 'Tier 0 Windows shell fix: auto (default; only writes files with a TTY) | always (write even without a TTY — for an agent running apply) | never')
+    .option('--scope <scope>', 'config scope to apply: project|user (default: nearest config)')
+    .option('--json', 'emit a machine-readable JSON document on stdout')
+    .action(async (options, command) => {
     const startedAt = Date.now();
+    const json = options.json === true;
+    if (json)
+        setQuietEnabled(true);
     renderLogo();
     const dryRun = options.dryRun === true;
-    let config;
-    const configPath = findConfigPath();
-    if (!configPath) {
-        console.error('No agentenv.toml found. Run `agentenv setup` first.');
-        process.exitCode = 1;
+    const scope = parseScopeFlag(options.scope);
+    if (scope.error) {
+        command.error(scope.error);
         return;
     }
+    let tier0Mode;
+    if (options.shellFix !== undefined) {
+        if (['auto', 'always', 'never'].includes(options.shellFix)) {
+            tier0Mode = options.shellFix;
+        }
+        else {
+            command.error(`invalid --shell-fix "${options.shellFix}" (expected "auto", "always", or "never")`);
+            return;
+        }
+    }
+    /** Emit a single-error JSON failure document (json mode's equivalent of a themed console.error). */
+    const jsonFail = (error) => {
+        console.log(JSON.stringify({ success: false, messages: [], errors: [error] }, null, 2));
+    };
+    let config;
+    let configPath;
+    if (scope.scope) {
+        configPath = configFilePath(scope.scope);
+        if (!fs.existsSync(configPath)) {
+            const error = `No agentenv.toml found at ${configPath} (scope ${scope.scope}).`;
+            if (json)
+                jsonFail(error);
+            else
+                console.error(error);
+            process.exitCode = 1;
+            return;
+        }
+    }
+    else {
+        configPath = findConfigPath() ?? null;
+        if (!configPath) {
+            const error = 'No agentenv.toml found. Run `agentenv setup` first.';
+            if (json)
+                jsonFail(error);
+            else
+                console.error(error);
+            process.exitCode = 1;
+            return;
+        }
+    }
     try {
-        config = loadConfig(configPath);
+        config = loadConfig(configPath, { layerUserConfig: true });
     }
     catch (error) {
-        console.error(theme.fail(error instanceof Error ? error.message : String(error)));
+        const message = error instanceof Error ? error.message : String(error);
+        if (json)
+            jsonFail(message);
+        else
+            console.error(theme.fail(message));
         process.exitCode = 1;
         return;
     }
-    printConfigPath(configPath);
+    if (!json)
+        printConfigPath(configPath);
     const report = validateConfig(config);
-    if (!reportValidation(report, 'Configuration invalid — not applying.')) {
+    if (report.errors.length > 0) {
+        if (json) {
+            console.log(JSON.stringify({ success: false, messages: [], errors: report.errors, warnings: report.warnings }, null, 2));
+        }
+        else {
+            reportValidation(report, 'Configuration invalid — not applying.');
+        }
         process.exitCode = 1;
         return;
     }
+    if (!json)
+        reportValidation(report, 'Configuration invalid — not applying.');
     const baseDir = resolveScopeDir(config.scope);
     if (dryRun) {
-        const enabledToolCount = Object.values(config.tools ?? {}).filter((on) => on === true).length;
         const files = [
             ...generateInstructionFiles(config, baseDir),
             ...userScopeInstructionFiles(config, baseDir, options),
         ];
         const agents = [...getEnabledAgents(config)];
         const integrations = enabledIntegrations(config, options);
-        console.log(`  Tools:          ${enabledToolCount} enabled -> ${path.join(baseDir, 'mise.toml')}`);
-        console.log(`  Generated files: ${files.map((file) => file.path).join(', ') || '(none)'}`);
+        const plan = buildApplyDryRunPlan(config, baseDir, configPath, files, agents, integrations);
+        if (json) {
+            const payload = { success: true, dryRun: true, ...plan };
+            console.log(JSON.stringify(payload, null, 2));
+            return;
+        }
+        console.log(`  Tools:          ${plan.misePlan.enabledToolCount} enabled -> ${plan.misePlan.miseTomlPath} [${plan.misePlan.status}]`);
+        console.log('  Generated files:');
+        if (plan.generatedFiles.length === 0) {
+            console.log('    (none)');
+        }
+        else {
+            for (const file of plan.generatedFiles) {
+                console.log(`    ${file.path} [${file.status}]${file.message ? ` — ${file.message}` : ''}`);
+            }
+        }
         console.log(`  Agents:         ${agents.join(', ') || '(none)'}${config.rtk?.enabled === true ? ' (rtk rewriting on)' : ''}`);
         console.log(`  Integrations:   ${integrations.length > 0 ? integrations.map((i) => i.getName()).join(', ') : '(none)'}`);
+        if (plan.tier0) {
+            console.log('  Tier 0 (Windows shell fix):');
+            for (const entry of plan.tier0) {
+                console.log(`    ${entry.agent}: ${entry.needsFix ? 'needs fix' : 'already configured'}`);
+            }
+        }
         printResult('ok', 'Dry run complete', 'no changes were made', Date.now() - startedAt);
         return;
     }
     const result = await withSpinner('Applying configuration...', (spinner) => applyConfiguration(config, baseDir, {
         skipMiseInstall: options.skipMiseInstall === true,
-        onMiseInstall: {
-            onStart: () => {
-                spinner.stop();
-                console.log(colorizeLine('Installing tools via mise...'));
+        tier0Mode,
+        // Streamed mise install progress is human-only chrome — it would
+        // otherwise interleave raw text into the JSON document.
+        onMiseInstall: json
+            ? undefined
+            : {
+                onStart: () => {
+                    spinner.stop();
+                    console.log(colorizeLine('Installing tools via mise...'));
+                },
+                onOutput: (chunk) => process.stdout.write(chunk),
+                onEnd: () => spinner.start(),
             },
-            onOutput: (chunk) => process.stdout.write(chunk),
-            onEnd: () => spinner.start(),
-        },
     }));
+    if (json) {
+        console.log(JSON.stringify(buildApplyJsonResult(result, { configPath, baseDir, warnings: report.warnings }), null, 2));
+        if (!result.success)
+            process.exitCode = 1;
+        return;
+    }
     printMessages(result.messages, result.errors);
     if (!result.success) {
         process.exitCode = 1;