@indigoai-us/hq-cloud 6.14.28 → 6.14.30

package/dist/qmd-reindex.js

@@ -16,48 +16,29 @@
  *
  * What it does, best-effort and idempotent:
  *   1. Auto-registers any `companies/<slug>/knowledge` dir that isn't yet a
- *      qmd collection (kills the manual "map" step).
+ *      qmd collection (kills the manual "map" step). Detects path drift when
+ *      the name exists but points elsewhere; repairs only when
+ *      `HQ_QMD_REPAIR_PATH_DRIFT=1` (non-breaking default: detect-only).
  *   2. Runs an incremental lexical `qmd update` (fast — qmd skips unchanged
  *      files by mtime).
  *   3. Rebuilds embeddings only when `embed: true` (slow on a multi-GB
- *      index; meant for an idle pass, not every sync).
+ *      index; meant for an idle pass, not every sync). Never embeds in the
+ *      same cycle as a path-drift repair (repair drops that collection's
+ *      vectors).
  *
  * The index itself is never synced — it is large, binary, and embeds absolute
  * local paths. Only its *freshness* is automated here.
  *
- * ## Corruption safety (feedback_b9a369ff)
+ * ## Corruption safety (feedback_b9a369ff + feedback_332c7ccc)
  *
- * The qmd store (`.qmd/index.sqlite`, backed by a sqlite-vec virtual table) was
- * being corrupted on the vector side (`content_vectors` / `vectors_vec_rowids`)
- * because TWO uncoordinated writers raced on it: this post-sync reindex and an
- * interactive session's own qmd maintenance (e.g. a skill's `qmd embed`). Two
- * defects compounded:
- *   1. A hard 120s `spawnSync` timeout that KILLED a long `qmd update`/`embed`
- *      mid-write, tearing down the process between vector-table writes.
- *   2. No cross-process serialization, so an interactive `qmd embed` and a
- *      runner-spawned `qmd update` overlapped with near certainty.
- *
- * The mitigations here, all inside the runner so every teammate gets them on
- * their next sync:
- *   - The exec timeout is raised substantially so a legitimate long pass is no
- *     longer killed mid-write in the first place. A timed-out pass is treated as
- *     "not done" (left dirty, retried next cycle) and NEVER advances to embed.
- *     That not-done handling — together with the writer serialization below — is
- *     the real protection; the signal used for the (now rare) kill is secondary.
- *     When the bound does fire the child is sent SIGINT rather than the default
- *     SIGTERM, but qmd 2.5.3 traps both identically (each just restores the
- *     cursor and exits), so this is only the same clean exit path qmd takes on
- *     Ctrl-C — not a guarantee the in-flight SQLite write unwinds.
- *   - A shared advisory lock at `<hqRoot>/.qmd/.reindex.lock` serializes qmd
- *     writers. The runner takes it before touching qmd and SKIPS the cycle (and
- *     marks the tree dirty so the next sync retries) when another writer holds
- *     it. The lock path sits next to the DB so interactive HQ qmd maintenance
- *     can honor the same rendezvous.
- *   - Corruption is detected cheaply from qmd's own output (the SQLITE_CORRUPT
- *     signature). On detection the corrupt DB files are quarantined aside (moved
- *     to `index.sqlite.corrupt-<ts>`, never deleted) and the cycle stops writing
- *     so a clean rebuild happens on the next pass — instead of writing further
- *     onto an already-damaged store.
+ * The qmd store (sqlite-vec) was being corrupted on the vector side because
+ * TWO uncoordinated writers raced on it. Mitigations:
+ *   - Raised exec timeout so legitimate long passes are not killed mid-write.
+ *   - Dual advisory lock: legacy `<hqRoot>/.qmd/.reindex.lock` AND
+ *     `<resolvedIndexDir>/.reindex.lock` (deduped when equal). Default index
+ *     is often `~/.cache/qmd/index.sqlite`, not `<hqRoot>/.qmd`.
+ *   - Corruption quarantine targets the resolved index dir; reports success
+ *     only when files were actually moved.
  */
 import * as fs from "fs";
 import * as path from "path";
@@ -82,6 +63,47 @@ export function resolveExecTimeoutMs(env = process.env) {
     }
     return DEFAULT_QMD_EXEC_TIMEOUT_MS;
 }
+/** Opt-in destructive path-drift repair (remove + re-add). Default off. */
+export function repairPathDriftEnabled(env = process.env) {
+    const raw = (env.HQ_QMD_REPAIR_PATH_DRIFT ?? "").trim().toLowerCase();
+    return raw === "1" || raw === "true" || raw === "yes";
+}
+/**
+ * Parse the directory that holds `index.sqlite` from `qmd status` output.
+ * Returns null when the Index line is missing/unparseable.
+ */
+export function parseIndexDirFromStatus(stdout) {
+    const m = stdout.match(/^\s*Index:\s*(.+?)\s*$/m);
+    if (!m)
+        return null;
+    const indexFile = m[1].trim();
+    if (!indexFile)
+        return null;
+    return path.dirname(indexFile);
+}
+/** Parse `Path:` from `qmd collection show` human output. */
+export function parseCollectionPathFromShow(stdout) {
+    const m = stdout.match(/^\s*Path:\s*(.+?)\s*$/m);
+    if (!m)
+        return null;
+    const p = m[1].trim();
+    return p || null;
+}
+/** Case-insensitive, trailing-separator-tolerant path equality after realpath. */
+export function pathsEquivalent(a, b, realpathSync = safeRealpathSync) {
+    return normalizePathKey(realpathSync(a)) === normalizePathKey(realpathSync(b));
+}
+function normalizePathKey(p) {
+    return path.resolve(p).replace(/[/\\]+$/, "").toLowerCase();
+}
+function safeRealpathSync(p) {
+    try {
+        return fs.realpathSync(p);
+    }
+    catch {
+        return path.resolve(p);
+    }
+}
 const defaultExec = (args) => {
     const res = spawnSync("qmd", args, {
         encoding: "utf8",
@@ -239,9 +261,9 @@ const defaultAcquireReindexLock = (lockPath) => {
         }
         catch (err) {
             if (err?.code !== "EEXIST") {
-                // The `.qmd` dir isn't writable (unusual — it holds the DB). Fail OPEN
-                // rather than block the reindex on an infra problem: proceed without the
-                // advisory lock. The corruption guard below is the remaining backstop.
+                // The lock dir isn't writable. Fail OPEN rather than block the reindex
+                // on an infra problem: proceed without the advisory lock. The corruption
+                // guard below is the remaining backstop.
                 return NOOP_LOCK;
             }
             // Held. Reclaim iff the holder is dead/stale, then retry once.
@@ -252,6 +274,33 @@ const defaultAcquireReindexLock = (lockPath) => {
     }
     return null;
 };
+/**
+ * Acquire unique lock paths (legacy + resolved index). If any is busy, release
+ * what was acquired and return busy. Dedupes when both paths are the same so a
+ * process never O_EXCL-locks itself out.
+ */
+export function acquireDualReindexLocks(acquireLock, lockPaths) {
+    const unique = [];
+    const seen = new Set();
+    for (const p of lockPaths) {
+        const key = normalizePathKey(p);
+        if (seen.has(key))
+            continue;
+        seen.add(key);
+        unique.push(p);
+    }
+    const locks = [];
+    for (const p of unique) {
+        const handle = acquireLock(p);
+        if (!handle) {
+            for (const acquired of locks)
+                acquired.release();
+            return { locks: [], busy: true };
+        }
+        locks.push(handle);
+    }
+    return { locks, busy: false };
+}
 const CORRUPTIBLE_DB_FILES = ["index.sqlite", "index.sqlite-wal", "index.sqlite-shm"];
 const defaultQuarantineCorruptIndex = (qmdDir, tsSuffix) => {
     let movedBase = null;
@@ -264,6 +313,8 @@ const defaultQuarantineCorruptIndex = (qmdDir, tsSuffix) => {
             fs.renameSync(src, dest);
             if (name === "index.sqlite")
                 movedBase = dest;
+            else if (movedBase === null)
+                movedBase = dest;
         }
         catch {
             // Best-effort: move what we can. A file we can't move is left in place;
@@ -288,15 +339,21 @@ export function reindexAfterSync(hqRoot, opts = {}) {
     const existsSync = opts.existsSync ?? fs.existsSync;
     const acquireLock = opts.acquireReindexLock ?? defaultAcquireReindexLock;
     const quarantine = opts.quarantineCorruptIndex ?? defaultQuarantineCorruptIndex;
+    const realpathSync = opts.realpathSync ?? safeRealpathSync;
+    const env = opts.env ?? process.env;
     const result = {
         qmdAvailable: false,
         collectionsAdded: [],
+        pathDriftDetected: [],
+        collectionsRepaired: [],
         updated: false,
         embedded: false,
         pendingDirty: false,
         lockBusy: false,
         timedOut: false,
         corruptionQuarantined: false,
+        corruptionQuarantineFailed: false,
+        indexDir: null,
     };
     try {
         // Guard: only operate on a real HQ tree.
@@ -318,19 +375,29 @@ export function reindexAfterSync(hqRoot, opts = {}) {
         const pendingSinceMs = pendingDirty && typeof state.pendingSinceMs === "number"
             ? state.pendingSinceMs
             : nowMs;
-        // Serialize qmd writers. If another writer (this runner from a prior cycle,
-        // or an interactive session's qmd maintenance) holds the lock, SKIP this
-        // cycle and mark the tree dirty so the next sync retries — never write onto
-        // the vector store concurrently (feedback_b9a369ff).
-        const lockPath = path.join(hqRoot, ".qmd", ".reindex.lock");
-        const lock = acquireLock(lockPath);
-        if (!lock) {
+        // Resolve the real index directory before locking. Default qmd layout is
+        // ~/.cache/qmd, not <hqRoot>/.qmd — status is read-only.
+        const legacyQmdDir = path.join(hqRoot, ".qmd");
+        const status = exec(["status"]);
+        const parsedIndexDir = parseIndexDirFromStatus(status.stdout ?? "");
+        const indexDir = parsedIndexDir ?? legacyQmdDir;
+        result.indexDir = indexDir;
+        // Serialize qmd writers across legacy + resolved layouts (feedback_332c7ccc).
+        const { locks, busy } = acquireDualReindexLocks(acquireLock, [
+            path.join(legacyQmdDir, ".reindex.lock"),
+            path.join(indexDir, ".reindex.lock"),
+        ]);
+        if (busy) {
             writeState(statePath, { ...state, pendingDirty: true, pendingSinceMs });
             result.lockBusy = true;
             result.pendingDirty = true;
             return result;
         }
         try {
+            if (looksCorrupt(status)) {
+                handleCorruption(indexDir, statePath, state, pendingSinceMs, nowMs, quarantine, result);
+                return result;
+            }
             // Guard: qmd must be installed. `qmd collection list` doubles as the
             // availability probe AND the source for which collections already exist.
             const list = exec(["collection", "list"]);
@@ -338,15 +405,17 @@ export function reindexAfterSync(hqRoot, opts = {}) {
                 return result; // qmd absent or errored — no-op
             // An already-corrupt store can surface here even on the lexical side.
             if (looksCorrupt(list)) {
-                handleCorruption(hqRoot, statePath, state, pendingSinceMs, nowMs, quarantine, result);
+                handleCorruption(indexDir, statePath, state, pendingSinceMs, nowMs, quarantine, result);
                 return result;
             }
             result.qmdAvailable = true;
             const existingCollections = list.stdout;
-            // 1. Auto-register missing company knowledge collections.
+            let repairedThisCycle = false;
+            // 1. Auto-register missing / reconcile drifted company knowledge collections.
             if (registrationMayBeStale) {
                 const companiesDir = path.join(hqRoot, "companies");
                 const slugs = (opts.readCompanies ?? defaultReadCompanies)(companiesDir);
+                const allowRepair = repairPathDriftEnabled(env);
                 for (const slug of slugs) {
                     const knowledgeDir = path.join(companiesDir, slug, "knowledge");
                     if (!existsSync(knowledgeDir))
@@ -354,14 +423,66 @@ export function reindexAfterSync(hqRoot, opts = {}) {
                     const hasMd = (opts.hasIndexableMarkdown ?? defaultHasIndexableMarkdown)(knowledgeDir);
                     if (!hasMd)
                         continue;
-                    // Already registered? qmd collection URIs look like `qmd://<slug>/`.
-                    if (existingCollections.includes(`qmd://${slug}/`))
+                    const namePresent = existingCollections.includes(`qmd://${slug}/`);
+                    if (!namePresent) {
+                        const add = exec(["collection", "add", knowledgeDir, "--name", slug, "--mask", "**/*.md"]);
+                        if (add.status === 0) {
+                            exec(["context", "add", `qmd://${slug}`, `Knowledge base for ${slug}.`]);
+                            result.collectionsAdded.push(slug);
+                        }
+                        continue;
+                    }
+                    // Name exists — check path (feedback_f8e233c6). Paths only on `show`.
+                    const show = exec(["collection", "show", slug]);
+                    if (show.status !== 0)
+                        continue;
+                    const registeredPath = parseCollectionPathFromShow(show.stdout ?? "");
+                    if (!registeredPath)
+                        continue;
+                    if (pathsEquivalent(registeredPath, knowledgeDir, realpathSync))
+                        continue;
+                    result.pathDriftDetected.push(slug);
+                    opts.log?.({
+                        event: "runner.qmd_reindex.path_drift",
+                        message: `qmd collection ${slug} path drifted`,
+                        err: null,
+                        context: {
+                            slug,
+                            registeredPath,
+                            desiredPath: knowledgeDir,
+                            repairEnabled: allowRepair,
+                        },
+                    });
+                    if (!allowRepair)
+                        continue;
+                    // Guaranteed hasMd + exists above. Remove + re-add; never embed inline.
+                    const removed = exec(["collection", "remove", slug]);
+                    if (removed.status !== 0) {
+                        writeState(statePath, { ...state, pendingDirty: true, pendingSinceMs });
+                        result.pendingDirty = true;
+                        opts.log?.({
+                            event: "runner.qmd_reindex.path_drift_repair_failed",
+                            message: `failed to remove drifted collection ${slug}`,
+                            err: removed.stderr ?? removed.stdout,
+                            context: { slug },
+                        });
                         continue;
+                    }
                     const add = exec(["collection", "add", knowledgeDir, "--name", slug, "--mask", "**/*.md"]);
-                    if (add.status === 0) {
-                        exec(["context", "add", `qmd://${slug}`, `Knowledge base for ${slug}.`]);
-                        result.collectionsAdded.push(slug);
+                    if (add.status !== 0) {
+                        writeState(statePath, { ...state, pendingDirty: true, pendingSinceMs });
+                        result.pendingDirty = true;
+                        opts.log?.({
+                            event: "runner.qmd_reindex.path_drift_repair_failed",
+                            message: `removed ${slug} but failed to re-add at desired path`,
+                            err: add.stderr ?? add.stdout,
+                            context: { slug, knowledgeDir },
+                        });
+                        continue;
                     }
+                    exec(["context", "add", `qmd://${slug}`, `Knowledge base for ${slug}.`]);
+                    result.collectionsRepaired.push(slug);
+                    repairedThisCycle = true;
                 }
             }
             // 2. Incremental lexical reindex.
@@ -376,7 +497,7 @@ export function reindexAfterSync(hqRoot, opts = {}) {
                 }
                 const update = exec(["update"]);
                 if (looksCorrupt(update)) {
-                    handleCorruption(hqRoot, statePath, state, pendingSinceMs, nowMs, quarantine, result);
+                    handleCorruption(indexDir, statePath, state, pendingSinceMs, nowMs, quarantine, result);
                     return result;
                 }
                 if (update.timedOut) {
@@ -396,11 +517,12 @@ export function reindexAfterSync(hqRoot, opts = {}) {
                     result.pendingDirty = true;
                 }
             }
-            // 3. Embeddings only on explicit request.
-            if (opts.embed) {
+            // 3. Embeddings only on explicit request — never after a path-drift repair
+            // in the same cycle (repair destroys that collection's vectors).
+            if (opts.embed && !repairedThisCycle) {
                 const embed = exec(["embed"]);
                 if (looksCorrupt(embed)) {
-                    handleCorruption(hqRoot, statePath, state, pendingSinceMs, nowMs, quarantine, result);
+                    handleCorruption(indexDir, statePath, state, pendingSinceMs, nowMs, quarantine, result);
                     return result;
                 }
                 if (embed.timedOut) {
@@ -413,7 +535,8 @@ export function reindexAfterSync(hqRoot, opts = {}) {
             }
         }
         finally {
-            lock.release();
+            for (const lock of locks)
+                lock.release();
         }
     }
     catch (err) {
@@ -436,12 +559,17 @@ export function reindexAfterSync(hqRoot, opts = {}) {
  * Quarantine the corrupt DB aside and mark the tree dirty so the NEXT cycle
  * rebuilds from scratch under the lock, instead of writing further onto an
  * already-damaged vector store. Mutates `result` in place.
+ * `corruptionQuarantined` is true only when files were actually moved.
  */
-function handleCorruption(hqRoot, statePath, state, pendingSinceMs, nowMs, quarantine, result) {
-    const qmdDir = path.join(hqRoot, ".qmd");
-    quarantine(qmdDir, quarantineSuffix(nowMs));
+function handleCorruption(indexDir, statePath, state, pendingSinceMs, nowMs, quarantine, result) {
+    const moved = quarantine(indexDir, quarantineSuffix(nowMs));
     writeState(statePath, { ...state, pendingDirty: true, pendingSinceMs });
-    result.corruptionQuarantined = true;
+    if (moved != null) {
+        result.corruptionQuarantined = true;
+    }
+    else {
+        result.corruptionQuarantineFailed = true;
+    }
     result.pendingDirty = true;
 }
 function readState(statePath) {

package/dist/qmd-reindex.js.map

@@ -1 +1 @@
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package/dist/qmd-reindex.test.d.ts

@@ -6,9 +6,9 @@
  * is invoked. We assert on the *sequence of qmd commands* the function would
  * run, which is the contract that keeps a teammate's index fresh after sync.
  *
- * The corruption-safety tests (lock serialization, timeout-kill handling, and
- * SQLITE_CORRUPT quarantine) pin the fix for feedback_b9a369ff — the post-sync
- * reindex racing an interactive qmd writer and corrupting the vector store.
+ * Corruption-safety tests pin feedback_b9a369ff + feedback_332c7ccc (resolved
+ * index path, dual-lock, honest quarantine). Path-drift tests pin
+ * feedback_f8e233c6 (detect-only by default; opt-in repair).
  */
 export {};
 //# sourceMappingURL=qmd-reindex.test.d.ts.map