@indigoai-us/hq-cli 5.345.114 → 5.345.116

package/dist/utils/resident-package-preload.js

@@ -42,7 +42,7 @@ export const RESIDENT_PACKAGE_MODULES = {
     "bot-logs-follow": [],
     mcp: ["../lib/mcp/tools.js", "../lib/mcp/prompts.js", "../lib/anywhere-person-setting.js", "../utils/cognito-session.js", "@indigoai-us/hq-cloud", "../sentry.js", "../lib/doctor/client-health-reason-codes-flag.js", "@indigoai-us/hq-flags-client"],
     childWrapper: ["../main.js", "../lib/service-manager/startup-migration.js", "../commands/storage-gate.js", "../lib/storage-feature-flag.js"],
-    coreJobRun: ["../commands/core-native-jobs-flag.js", "../commands/core-native-family-flag.js", "../lib/flag-registry.js", "../lib/flag-snapshot-file.js"],
+    coreJobRun: [],
     "daemon-call": ["../lib/daemon/protocol.js"],
     daemon: [
         "../sentry.js",
@@ -204,12 +204,7 @@ const LOADERS = {
         () => import("../commands/storage-gate.js"),
         () => import("../lib/storage-feature-flag.js"),
     ],
-    coreJobRun: [
-        () => import("../commands/core-native-jobs-flag.js"),
-        () => import("../commands/core-native-family-flag.js"),
-        () => import("../lib/flag-registry.js"),
-        () => import("../lib/flag-snapshot-file.js"),
-    ],
+    coreJobRun: [],
     "daemon-call": [
         () => import("../lib/daemon/protocol.js"),
     ],

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@indigoai-us/hq-cli",
-  "version": "5.345.114",
+  "version": "5.345.116",
   "description": "HQ by Indigo management CLI — modules and cloud sync",
   "main": "dist/index.js",
   "bin": {

package/assets/scaffold/core/scripts/audit-log.sh

@@ -1,384 +0,0 @@
-#!/usr/bin/env bash
-# =============================================================================
-# audit-log.sh — Structured audit log utility for HQ
-#
-# Schema fields: timestamp, event, company, project, story_id, worker, model,
-#                action, files_touched, result, duration_ms, error, session_id
-#
-# Usage:
-#   core/scripts/audit-log.sh append --event task_started --project my-project [fields...]
-#   core/scripts/audit-log.sh query [--project X] [--company X] [--worker X] [--since X] [--event X]
-#   core/scripts/audit-log.sh summary
-#
-# Events: task_started | phase_completed | task_completed | task_failed |
-#         project_started | project_completed |
-#         story_dispatched | story_completed | story_failed |
-#         pipeline_started | pipeline_completed | pipeline_paused | pipeline_failed |
-#         project_pr_created | project_reviewed | project_merged | project_deployed |
-#         project_canary_pass | project_canary_fail |
-#         gate_requested | gate_resolved
-# Results: success | fail | skipped
-# =============================================================================
-
-set -euo pipefail
-
-HQ_ROOT="${HQ_ROOT:-$(cd "$(dirname "${BASH_SOURCE[0]}")/../.." && pwd)}"
-# shellcheck source=core/scripts/lib/portable.sh
-. "$HQ_ROOT/core/scripts/lib/portable.sh"
-AUDIT_LOG="$HQ_ROOT/workspace/metrics/audit-log.jsonl"
-
-VALID_EVENTS="task_started phase_completed task_completed task_failed project_started project_completed story_dispatched story_completed story_failed pipeline_started pipeline_completed pipeline_paused pipeline_failed project_pr_created project_reviewed project_merged project_deployed project_canary_pass project_canary_fail gate_requested gate_resolved"
-VALID_RESULTS="success fail skipped"
-
-# ---------------------------------------------------------------------------
-# helpers
-# ---------------------------------------------------------------------------
-
-die() { echo "ERROR: $*" >&2; exit 1; }
-
-# require_jq comes from portable.sh (multi-OS install guidance).
-
-iso_now() {
-  date -u +"%Y-%m-%dT%H:%M:%SZ"
-}
-
-contains() {
-  local needle="$1" haystack="$2"
-  [[ " $haystack " == *" $needle "* ]]
-}
-
-# ---------------------------------------------------------------------------
-# append subcommand
-# ---------------------------------------------------------------------------
-# Usage:
-#   audit-log.sh append \
-#     --event task_started \
-#     --project hq-observability \
-#     [--company {company}] \
-#     [--story-id US-001] \
-#     [--worker backend-dev] \
-#     [--model sonnet] \
-#     [--action "Scaffold schema"] \
-#     [--files "core/scripts/audit-log.sh,workspace/metrics/audit-log.jsonl"] \
-#     [--result success] \
-#     [--duration-ms 1234] \
-#     [--error "message"] \
-#     [--session-id abc123]
-# ---------------------------------------------------------------------------
-cmd_append() {
-  require_jq
-
-  local timestamp="" event="" company="" project="" story_id="" worker=""
-  local model="" action="" files_touched="" result="" duration_ms="" error="" session_id=""
-
-  while [[ $# -gt 0 ]]; do
-    case "$1" in
-      --timestamp)     timestamp="$2";    shift 2 ;;
-      --event)         event="$2";        shift 2 ;;
-      --company)       company="$2";      shift 2 ;;
-      --project)       project="$2";      shift 2 ;;
-      --story-id)      story_id="$2";     shift 2 ;;
-      --worker)        worker="$2";       shift 2 ;;
-      --model)         model="$2";        shift 2 ;;
-      --action)        action="$2";       shift 2 ;;
-      --files)         files_touched="$2"; shift 2 ;;
-      --result)        result="$2";       shift 2 ;;
-      --duration-ms)   duration_ms="$2";  shift 2 ;;
-      --error)         error="$2";        shift 2 ;;
-      --session-id)    session_id="$2";   shift 2 ;;
-      *) die "Unknown flag: $1" ;;
-    esac
-  done
-
-  # --- required field validation ---
-  [[ -n "$event" ]]   || die "Missing required field: --event"
-  [[ -n "$project" ]] || die "Missing required field: --project"
-
-  # validate event value
-  contains "$event" "$VALID_EVENTS" || die "Invalid event '$event'. Must be one of: $VALID_EVENTS"
-
-  # validate result if provided
-  if [[ -n "$result" ]]; then
-    contains "$result" "$VALID_RESULTS" || die "Invalid result '$result'. Must be one of: $VALID_RESULTS"
-  fi
-
-  # validate duration_ms is numeric if provided
-  if [[ -n "$duration_ms" ]]; then
-    [[ "$duration_ms" =~ ^[0-9]+$ ]] || die "--duration-ms must be a non-negative integer"
-  fi
-
-  # auto-fill timestamp
-  [[ -n "$timestamp" ]] || timestamp="$(iso_now)"
-
-  # --- build files_touched array ---
-  # Input: comma-separated string → JSON array
-  local files_json="[]"
-  if [[ -n "$files_touched" ]]; then
-    files_json="$(echo "$files_touched" | jq -Rc 'split(",")')"
-  fi
-
-  # --- build JSON line ---
-  local entry
-  entry="$(jq -cn \
-    --arg ts        "$timestamp" \
-    --arg event     "$event" \
-    --arg company   "$company" \
-    --arg project   "$project" \
-    --arg story_id  "$story_id" \
-    --arg worker    "$worker" \
-    --arg model     "$model" \
-    --arg action    "$action" \
-    --argjson files "$files_json" \
-    --arg result    "$result" \
-    --arg dur       "$duration_ms" \
-    --arg error     "$error" \
-    --arg session   "$session_id" \
-    '{
-      timestamp:    $ts,
-      event:        $event,
-      company:      (if $company   != "" then $company   else null end),
-      project:      $project,
-      story_id:     (if $story_id  != "" then $story_id  else null end),
-      worker:       (if $worker    != "" then $worker    else null end),
-      model:        (if $model     != "" then $model     else null end),
-      action:       (if $action    != "" then $action    else null end),
-      files_touched: $files,
-      result:       (if $result    != "" then $result    else null end),
-      duration_ms:  (if $dur       != "" then ($dur | tonumber) else null end),
-      error:        (if $error     != "" then $error     else null end),
-      session_id:   (if $session   != "" then $session   else null end)
-    } | with_entries(select(.value != null and .value != []))'
-  )"
-
-  mkdir -p "$(dirname "$AUDIT_LOG")"
-  echo "$entry" >> "$AUDIT_LOG"
-  echo "Appended to $AUDIT_LOG"
-}
-
-# ---------------------------------------------------------------------------
-# query subcommand
-# ---------------------------------------------------------------------------
-# Usage:
-#   audit-log.sh query [--project X] [--company X] [--worker X] [--since YYYY-MM-DD] [--event X]
-# ---------------------------------------------------------------------------
-cmd_query() {
-  require_jq
-
-  local filter_project="" filter_company="" filter_worker="" filter_since="" filter_event=""
-
-  while [[ $# -gt 0 ]]; do
-    case "$1" in
-      --project) filter_project="$2"; shift 2 ;;
-      --company) filter_company="$2"; shift 2 ;;
-      --worker)  filter_worker="$2";  shift 2 ;;
-      --since)   filter_since="$2";   shift 2 ;;
-      --event)   filter_event="$2";   shift 2 ;;
-      *) die "Unknown flag: $1" ;;
-    esac
-  done
-
-  if [[ ! -f "$AUDIT_LOG" ]]; then
-    echo "No audit log found at $AUDIT_LOG" >&2
-    exit 0
-  fi
-
-  # Build jq args + filter chain (parameterized to prevent filter injection)
-  local jq_args=()
-  local jq_filter="."
-
-  if [[ -n "$filter_project" ]]; then
-    jq_args+=(--arg fp "$filter_project")
-    jq_filter+=' | select(.project == $fp)'
-  fi
-  if [[ -n "$filter_company" ]]; then
-    jq_args+=(--arg fc "$filter_company")
-    jq_filter+=' | select(.company == $fc)'
-  fi
-  if [[ -n "$filter_worker" ]]; then
-    jq_args+=(--arg fw "$filter_worker")
-    jq_filter+=' | select(.worker == $fw)'
-  fi
-  if [[ -n "$filter_event" ]]; then
-    jq_args+=(--arg fe "$filter_event")
-    jq_filter+=' | select(.event == $fe)'
-  fi
-  if [[ -n "$filter_since" ]]; then
-    jq_args+=(--arg fs "$filter_since")
-    jq_filter+=' | select(.timestamp >= $fs)'
-  fi
-
-  local count
-  count=$(jq -r "${jq_args[@]}" "$jq_filter" "$AUDIT_LOG" 2>/dev/null | jq -s 'length')
-
-  jq -r "${jq_args[@]}" "$jq_filter" "$AUDIT_LOG" 2>/dev/null | jq -s '.'
-  echo "--- $count record(s) matched ---" >&2
-}
-
-# ---------------------------------------------------------------------------
-# summary subcommand
-# ---------------------------------------------------------------------------
-# Outputs table: project | stories | phases | failures | last_activity
-# ---------------------------------------------------------------------------
-cmd_summary() {
-  require_jq
-
-  if [[ ! -f "$AUDIT_LOG" ]]; then
-    echo "No audit log found at $AUDIT_LOG" >&2
-    exit 0
-  fi
-
-  local line_count
-  line_count=$(wc -l < "$AUDIT_LOG" | tr -d ' ')
-
-  if [[ "$line_count" -eq 0 ]]; then
-    echo "Audit log is empty — no records to summarize."
-    exit 0
-  fi
-
-  echo ""
-  echo "=== Audit Log Summary ==="
-  echo ""
-
-  # Per-project breakdown
-  echo "--- By Project ---"
-  printf "%-40s  %8s  %8s  %8s  %8s  %-26s\n" \
-    "PROJECT" "STORIES" "PHASES" "FAILURES" "SKIPPED" "LAST_ACTIVITY"
-  printf "%-40s  %8s  %8s  %8s  %8s  %-26s\n" \
-    "$(printf '%0.s-' {1..40})" "--------" "--------" "--------" "--------" "$(printf '%0.s-' {1..26})"
-
-  jq -rs '
-    group_by(.project) |
-    .[] |
-    {
-      project:       .[0].project,
-      stories:       (map(select(.event == "task_completed" or .event == "task_failed")) | length),
-      phases:        (map(select(.event == "phase_completed")) | length),
-      failures:      (map(select(.result == "fail" or .event == "task_failed")) | length),
-      skipped:       (map(select(.result == "skipped")) | length),
-      last_activity: (sort_by(.timestamp) | last | .timestamp)
-    }
-  ' "$AUDIT_LOG" | jq -r '
-    "\(.project // "unknown")\t\(.stories)\t\(.phases)\t\(.failures)\t\(.skipped)\t\(.last_activity // "-")"
-  ' | while IFS=$'\t' read -r proj stories phases failures skipped last; do
-    printf "%-40s  %8s  %8s  %8s  %8s  %-26s\n" \
-      "$proj" "$stories" "$phases" "$failures" "$skipped" "$last"
-  done
-
-  echo ""
-
-  # Per-worker breakdown
-  echo "--- By Worker ---"
-  printf "%-30s  %8s  %8s  %-10s\n" "WORKER" "TASKS" "FAILURES" "SUCCESS_RATE"
-  printf "%-30s  %8s  %8s  %-10s\n" \
-    "$(printf '%0.s-' {1..30})" "--------" "--------" "----------"
-
-  jq -rs '
-    map(select(.worker != null)) |
-    group_by(.worker) |
-    .[] |
-    {
-      worker:   .[0].worker,
-      tasks:    (map(select(.event == "task_completed" or .event == "task_failed")) | length),
-      failures: (map(select(.result == "fail" or .event == "task_failed")) | length)
-    } |
-    . + {
-      rate: (if .tasks > 0 then (((.tasks - .failures) / .tasks * 100) | round | tostring) + "%" else "n/a" end)
-    }
-  ' "$AUDIT_LOG" | jq -r '
-    "\(.worker)\t\(.tasks)\t\(.failures)\t\(.rate)"
-  ' | while IFS=$'\t' read -r worker tasks failures rate; do
-    printf "%-30s  %8s  %8s  %-10s\n" "$worker" "$tasks" "$failures" "$rate"
-  done
-
-  echo ""
-
-  # Overall stats
-  local total_events total_tasks total_failures
-  total_events=$(wc -l < "$AUDIT_LOG" | tr -d ' ')
-  total_tasks=$(jq -rs 'map(select(.event == "task_completed" or .event == "task_failed")) | length' "$AUDIT_LOG")
-  total_failures=$(jq -rs 'map(select(.result == "fail" or .event == "task_failed")) | length' "$AUDIT_LOG")
-
-  echo "--- Totals ---"
-  echo "  Total events:   $total_events"
-  echo "  Total tasks:    $total_tasks"
-  echo "  Total failures: $total_failures"
-  echo ""
-}
-
-# ---------------------------------------------------------------------------
-# help
-# ---------------------------------------------------------------------------
-cmd_help() {
-  cat <<'EOF'
-audit-log.sh — HQ audit log utility
-
-SUBCOMMANDS:
-  append    Write one JSONL record to the audit log
-  query     Filter and display records
-  summary   Show aggregated table (project | worker | status)
-
-APPEND FLAGS (--event and --project are required):
-  --timestamp    ISO8601 (auto-filled if omitted)
-  --event        task_started | phase_completed | task_completed | task_failed |
-                 project_started | project_completed |
-                 story_dispatched | story_completed | story_failed |
-                 pipeline_started | pipeline_completed | pipeline_paused |
-                 pipeline_failed | project_pr_created | project_reviewed |
-                 project_merged | project_deployed | project_canary_pass |
-                 project_canary_fail | gate_requested | gate_resolved
-  --company      Company slug (e.g. {company})
-  --project      Project slug (e.g. hq-observability)
-  --story-id     Story ID (e.g. US-001)
-  --worker       Worker name (e.g. backend-dev)
-  --model        Model name (e.g. sonnet)
-  --action       Short description of what happened
-  --files        Comma-separated file paths touched
-  --result       success | fail | skipped
-  --duration-ms  Wall-clock time in milliseconds (integer)
-  --error        Error message if result=fail
-  --session-id   Claude session/thread ID
-
-QUERY FLAGS:
-  --project      Filter by project slug
-  --company      Filter by company slug
-  --worker       Filter by worker name
-  --since        Filter by timestamp >= YYYY-MM-DD (or full ISO8601)
-  --event        Filter by event type
-
-EXAMPLES:
-  # Append a task_started event
-  core/scripts/audit-log.sh append \
-    --event task_started \
-    --project hq-observability \
-    --company {company} \
-    --story-id US-001 \
-    --worker backend-dev \
-    --model sonnet
-
-  # Query all failures for a project
-  core/scripts/audit-log.sh query --project hq-observability --event task_failed
-
-  # Query since a date
-  core/scripts/audit-log.sh query --since 2026-03-01
-
-  # Show summary table
-  core/scripts/audit-log.sh summary
-
-LOG FILE:
-  workspace/metrics/audit-log.jsonl
-EOF
-}
-
-# ---------------------------------------------------------------------------
-# dispatch
-# ---------------------------------------------------------------------------
-SUBCOMMAND="${1:-help}"
-shift || true
-
-case "$SUBCOMMAND" in
-  append)  cmd_append  "$@" ;;
-  query)   cmd_query   "$@" ;;
-  summary) cmd_summary "$@" ;;
-  help|--help|-h) cmd_help ;;
-  *) die "Unknown subcommand '$SUBCOMMAND'. Use: append | query | summary | help" ;;
-esac

package/assets/scaffold/core/scripts/git-pack-extension-check.sh

@@ -1,164 +0,0 @@
-#!/usr/bin/env bash
-# hq-core: public
-# git-pack-extension-check.sh — find pack files that have lost their extension.
-#
-# A git packfile set is three files sharing one basename:
-#
-#   pack-<sha>.pack   the objects           (magic "PACK")
-#   pack-<sha>.idx    the index into them   (magic "\377tOc")
-#   pack-<sha>.rev    reverse index         (magic "RIDX")
-#
-# Git pairs them BY EXTENSION. Strip the extension off any one of them and git
-# stops seeing the set entirely: the objects are still on disk, byte for byte,
-# but they become unreachable. The repo then fails in a way that reads like
-# catastrophic history loss rather than a filename problem:
-#
-#   fatal: unable to read tree (<sha>)
-#   error: bad tree object HEAD
-#   error: refs/heads/<branch>: invalid sha1 pointer <sha>
-#
-# `git fsck` reports the objects as missing and `git gc` cannot help, because
-# nothing is actually corrupt — the bytes are intact and the repair is a
-# rename. That mismatch between how it presents and what it is makes this
-# failure expensive to diagnose from the error text alone, which is why this
-# check exists as a deterministic probe.
-#
-# Git never writes an extensionless `pack-*` file, so finding one is
-# unambiguous. Observed in the wild on a macOS HQ root where a folder-level
-# sync/backup agent had been walking the tree; the mechanism that drops the
-# extension is not established.
-#
-# Usage:
-#   git-pack-extension-check.sh [--root <path>] [--fix] [--quiet]
-#
-#   --root <path>   Repository to check (default: current directory).
-#   --fix           Rename each orphan back to the extension its magic bytes
-#                   prove it should carry. Without this the script only
-#                   reports.
-#   --quiet         Suppress the healthy-case line; findings still print.
-#
-# Exit codes:
-#   0  healthy, or every orphan was repaired under --fix
-#   1  usage error, or the root is not a git repository
-#   2  orphans found and left in place (report-only, or unrepairable)
-#
-# The repair is a rename and nothing else. It never deletes, never rewrites
-# file contents, never touches refs or the index, and refuses to overwrite an
-# existing target. A file whose magic bytes are not a known pack signature is
-# reported and left alone — this script will not guess.
-
-set -uo pipefail
-
-ROOT="."
-FIX=0
-QUIET=0
-
-while [[ $# -gt 0 ]]; do
-  case "$1" in
-    --root)
-      [[ $# -ge 2 ]] || { echo "git-pack-extension-check: --root needs a path" >&2; exit 1; }
-      ROOT="$2"; shift 2 ;;
-    --fix)   FIX=1; shift ;;
-    --quiet) QUIET=1; shift ;;
-    -h|--help)
-      sed -n '2,50p' "$0" | sed 's/^# \{0,1\}//'
-      exit 0 ;;
-    *)
-      echo "git-pack-extension-check: unknown argument '$1'" >&2
-      exit 1 ;;
-  esac
-done
-
-if [[ ! -d "$ROOT" ]]; then
-  echo "git-pack-extension-check: not a directory: $ROOT" >&2
-  exit 1
-fi
-
-# Packs live in the COMMON git dir, not the per-worktree one — a linked
-# worktree shares the main object store, so checking either resolves to the
-# same place. `--path-format=absolute` needs git 2.31+; the fallback keeps
-# this working on older hosts by resolving the (possibly relative) path
-# against the repo root itself.
-GIT_COMMON="$(git -C "$ROOT" rev-parse --path-format=absolute --git-common-dir 2>/dev/null || true)"
-if [[ -z "$GIT_COMMON" ]]; then
-  GIT_COMMON="$(git -C "$ROOT" rev-parse --git-common-dir 2>/dev/null || true)"
-  if [[ -z "$GIT_COMMON" ]]; then
-    echo "git-pack-extension-check: not a git repository: $ROOT" >&2
-    exit 1
-  fi
-  if [[ "$GIT_COMMON" != /* ]]; then
-    GIT_COMMON="$(cd "$ROOT" && cd "$GIT_COMMON" 2>/dev/null && pwd || true)"
-  fi
-fi
-
-PACK_DIR="$GIT_COMMON/objects/pack"
-if [[ ! -d "$PACK_DIR" ]]; then
-  [[ "$QUIET" == "1" ]] || echo "git-pack-extension-check: no pack directory, nothing to check"
-  exit 0
-fi
-
-# The magic bytes are read with `od` rather than compared as shell strings:
-# a packfile is binary and its first bytes can include NUL, which a shell
-# variable cannot hold.
-magic_of() {
-  od -A n -t x1 -N 4 "$1" 2>/dev/null | tr -d ' \n'
-}
-
-FOUND=0
-REPAIRED=0
-UNREPAIRED=0
-
-# NUL-delimited: a mangled filename is exactly the case where a newline in a
-# name would split the list and corrupt the scan.
-while IFS= read -r -d '' orphan; do
-  base="$(basename "$orphan")"
-  hex="$(magic_of "$orphan")"
-  case "$hex" in
-    5041434b) ext="pack" ;;   # "PACK"
-    ff744f63) ext="idx"  ;;   # "\377tOc"
-    52494458) ext="rev"  ;;   # "RIDX"
-    *)        ext="" ;;
-  esac
-
-  FOUND=$((FOUND + 1))
-
-  if [[ -z "$ext" ]]; then
-    echo "git-pack-extension-check: FOUND $base — extensionless, but its magic bytes (${hex:-empty}) are not a pack/idx/rev signature; leaving it alone" >&2
-    UNREPAIRED=$((UNREPAIRED + 1))
-    continue
-  fi
-
-  target="$orphan.$ext"
-  if [[ -e "$target" ]]; then
-    echo "git-pack-extension-check: FOUND $base — should be $base.$ext, but that file already exists; resolve by hand" >&2
-    UNREPAIRED=$((UNREPAIRED + 1))
-    continue
-  fi
-
-  if [[ "$FIX" != "1" ]]; then
-    echo "git-pack-extension-check: FOUND $base — lost its .$ext extension; git cannot see this pack set. Re-run with --fix to rename it." >&2
-    UNREPAIRED=$((UNREPAIRED + 1))
-    continue
-  fi
-
-  if mv -n "$orphan" "$target" 2>/dev/null && [[ -e "$target" && ! -e "$orphan" ]]; then
-    echo "git-pack-extension-check: REPAIRED $base -> $base.$ext"
-    REPAIRED=$((REPAIRED + 1))
-  else
-    echo "git-pack-extension-check: FAILED to rename $base -> $base.$ext" >&2
-    UNREPAIRED=$((UNREPAIRED + 1))
-  fi
-done < <(find "$PACK_DIR" -maxdepth 1 -type f -name 'pack-*' ! -name '*.*' -print0 2>/dev/null)
-
-if [[ "$FOUND" -eq 0 ]]; then
-  [[ "$QUIET" == "1" ]] || echo "git-pack-extension-check: ok — no extensionless pack files in $PACK_DIR"
-  exit 0
-fi
-
-if [[ "$UNREPAIRED" -gt 0 ]]; then
-  echo "git-pack-extension-check: ${FOUND} orphan(s), ${REPAIRED} repaired, ${UNREPAIRED} still broken" >&2
-  exit 2
-fi
-
-echo "git-pack-extension-check: ${REPAIRED} pack file(s) repaired — re-run 'git fsck' to confirm"
-exit 0