@imix-js/taproot 0.5.1 → 0.7.0

package/dist/core/dor-runner.js

@@ -1,5 +1,5 @@
 import { existsSync, readFileSync } from 'fs';
-import { join, dirname, resolve, relative } from 'path';
+import { join, dirname, resolve, relative, normalize } from 'path';
 import { spawnSync } from 'child_process';
 import { parseMarkdown } from './markdown-parser.js';
 import { loadConfig } from './config.js';
@@ -41,6 +41,117 @@ export function resolveUsecasePath(implMdPath, cwd) {
     const behaviourDir = dirname(implDir); // <behaviour>/
     return join(behaviourDir, 'usecase.md');
 }
+// ─── Impl ordering check (depends-on) ────────────────────────────────────────
+function readImplDependsOn(implMdPath, cwd) {
+    const absPath = resolve(cwd, implMdPath);
+    if (!existsSync(absPath))
+        return { paths: [] };
+    let content;
+    try {
+        content = readFileSync(absPath, 'utf-8');
+    }
+    catch {
+        return { paths: [] };
+    }
+    const parsed = parseMarkdown(absPath, content);
+    const section = parsed.sections.get('depends on');
+    if (!section)
+        return { paths: [] };
+    const rawPaths = section.bodyLines
+        .map(l => l.trim())
+        .filter(l => l.length > 0)
+        .map(l => (l.startsWith('- ') ? l.slice(2).trim() : l))
+        .filter(l => l.length > 0);
+    if (rawPaths.length === 0)
+        return { paths: [] };
+    const invalid = rawPaths.filter(p => !p.includes('/') && !p.endsWith('.md'));
+    if (invalid.length > 0) {
+        return {
+            error: `depends-on must be a string path or list of string paths — got: ${invalid.join(', ')}`,
+        };
+    }
+    return { paths: rawPaths.map(p => normalize(p)) };
+}
+function detectDependsOnCycle(startImplPath, cwd) {
+    const normStart = normalize(startImplPath);
+    const stack = [[normStart, [normStart]]];
+    while (stack.length > 0) {
+        const [current, trace] = stack.pop();
+        const depsResult = readImplDependsOn(current, cwd);
+        if ('error' in depsResult || depsResult.paths.length === 0)
+            continue;
+        for (const dep of depsResult.paths) {
+            if (trace.includes(dep)) {
+                const cycleStart = trace.indexOf(dep);
+                const cycle = [...trace.slice(cycleStart), dep];
+                return `circular dependency: ${cycle.join(' → ')}`;
+            }
+            stack.push([dep, [...trace, dep]]);
+        }
+    }
+    return null;
+}
+function checkImplOrdering(implMdPath, cwd) {
+    const depsResult = readImplDependsOn(implMdPath, cwd);
+    if ('error' in depsResult) {
+        return [{
+                name: 'ordering-depends-on',
+                passed: false,
+                output: depsResult.error,
+                correction: 'Fix the depends-on field: use a valid project-root-relative path (e.g. taproot/intent/behaviour/impl/impl.md)',
+            }];
+    }
+    if (depsResult.paths.length === 0)
+        return [];
+    const cycleError = detectDependsOnCycle(implMdPath, cwd);
+    if (cycleError) {
+        return [{
+                name: 'ordering-depends-on',
+                passed: false,
+                output: cycleError,
+                correction: 'Remove the circular dependency before declaring this implementation',
+            }];
+    }
+    const failures = [];
+    for (const depPath of depsResult.paths) {
+        const absDepPath = resolve(cwd, depPath);
+        if (!existsSync(absDepPath)) {
+            failures.push(`depends-on: ${depPath} does not exist. Check the path relative to the project root`);
+            continue;
+        }
+        let depContent;
+        try {
+            depContent = readFileSync(absDepPath, 'utf-8');
+        }
+        catch {
+            failures.push(`depends-on: ${depPath} could not be read`);
+            continue;
+        }
+        const stateMatch = depContent.match(/\*\*State:\*\*\s*(\S+)/);
+        if (!stateMatch) {
+            failures.push(`depends-on: ${depPath} has no state field. The referenced impl.md is incomplete — add a state: field before declaring this dependency`);
+            continue;
+        }
+        const depState = stateMatch[1];
+        if (depState !== 'complete') {
+            failures.push(`depends-on: ${depPath} has state: ${depState}. That implementation must be complete before this one can be declared`);
+        }
+    }
+    if (failures.length === 0) {
+        return [{
+                name: 'ordering-depends-on',
+                passed: true,
+                output: '',
+                correction: '',
+            }];
+    }
+    return [{
+            name: 'ordering-depends-on',
+            passed: false,
+            output: failures.join('\n'),
+            correction: 'Complete all declared dependencies before making this declaration commit',
+        }];
+}
 export function runDorChecks(implMdPath, cwd) {
     const results = [];
     const usecasePath = resolveUsecasePath(implMdPath, cwd);
@@ -102,7 +213,10 @@ export function runDorChecks(implMdPath, cwd) {
         output: hasRelated ? '' : 'Missing ## Related section',
         correction: 'Add a ## Related section documenting related behaviours to usecase.md',
     });
-    // 6. Configured definitionOfReady conditions
+    // 6. Impl ordering constraints (depends-on)
+    const orderingResults = checkImplOrdering(implMdPath, cwd);
+    results.push(...orderingResults);
+    // 7. Configured definitionOfReady conditions
     const dorConditions = config.definitionOfReady;
     if (dorConditions && dorConditions.length > 0) {
         const resolvedChecks = readDorResolutions(implMdPath, cwd);

package/dist/core/dor-runner.js.map

@@ -1 +1 @@
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package/dist/core/fs-walker.js

@@ -5,7 +5,7 @@ const MARKER_FILES = {
     'usecase.md': 'behaviour',
     'impl.md': 'impl',
 };
-const DEFAULT_EXCLUDE = new Set(['_brainstorms', 'skills', '.git', 'node_modules', 'dist', 'global-truths']);
+const DEFAULT_EXCLUDE = new Set(['_brainstorms', 'skills', '.git', 'node_modules', 'dist', 'global-truths', 'agent', 'specs']);
 export function walkHierarchy(rootPath, options = {}) {
     const excludeDirs = options.excludeDirs ?? DEFAULT_EXCLUDE;
     return walkDir(rootPath, rootPath, null, 0, excludeDirs);

package/dist/core/fs-walker.js.map

@@ -1 +1 @@
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+{"version":3,"file":"fs-walker.js","sourceRoot":"","sources":["../../src/core/fs-walker.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,WAAW,EAAE,QAAQ,EAAE,MAAM,IAAI,CAAC;AAC3C,OAAO,EAAE,IAAI,EAAE,QAAQ,EAAE,QAAQ,EAAE,MAAM,MAAM,CAAC;AAGhD,MAAM,YAAY,GAA+B;IAC/C,WAAW,EAAE,QAAQ;IACrB,YAAY,EAAE,WAAW;IACzB,SAAS,EAAE,MAAM;CAClB,CAAC;AAEF,MAAM,eAAe,GAAG,IAAI,GAAG,CAAC,CAAC,cAAc,EAAE,QAAQ,EAAE,MAAM,EAAE,cAAc,EAAE,MAAM,EAAE,eAAe,EAAE,OAAO,EAAE,OAAO,CAAC,CAAC,CAAC;AAE/H,MAAM,UAAU,aAAa,CAC3B,QAAgB,EAChB,UAAyC,EAAE;IAE3C,MAAM,WAAW,GAAG,OAAO,CAAC,WAAW,IAAI,eAAe,CAAC;IAC3D,OAAO,OAAO,CAAC,QAAQ,EAAE,QAAQ,EAAE,IAAI,EAAE,CAAC,EAAE,WAAW,CAAC,CAAC;AAC3D,CAAC;AAED,SAAS,OAAO,CACd,OAAe,EACf,QAAgB,EAChB,MAAyB,EACzB,KAAa,EACb,WAAwB;IAExB,IAAI,OAAiB,CAAC;IACtB,IAAI,CAAC;QACH,OAAO,GAAG,WAAW,CAAC,OAAO,CAAC,CAAC;IACjC,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,GAAG,EAAE,CAAC;IACf,CAAC;IAED,MAAM,WAAW,GAAa,EAAE,CAAC;IACjC,MAAM,OAAO,GAAa,EAAE,CAAC;IAE7B,KAAK,MAAM,KAAK,IAAI,OAAO,EAAE,CAAC;QAC5B,IAAI,YAAY,CAAC,KAAK,CAAC,EAAE,CAAC;YACxB,WAAW,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;QAC1B,CAAC;QACD,IAAI,CAAC;YACH,MAAM,QAAQ,GAAG,IAAI,CAAC,OAAO,EAAE,KAAK,CAAC,CAAC;YACtC,IAAI,QAAQ,CAAC,QAAQ,CAAC,CAAC,WAAW,EAAE,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC;gBAChE,OAAO,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;YACtB,CAAC;QACH,CAAC;QAAC,MAAM,CAAC;YACP,0BAA0B;QAC5B,CAAC;IACH,CAAC;IAED,MAAM,IAAI,GAAe;QACvB,YAAY,EAAE,OAAO;QACrB,YAAY,EAAE,QAAQ,CAAC,QAAQ,EAAE,OAAO,CAAC,IAAI,GAAG;QAChD,IAAI,EAAE,QAAQ,CAAC,OAAO,CAAC;QACvB,MAAM,EAAE,IAAI;QACZ,WAAW;QACX,QAAQ,EAAE,EAAE;QACZ,MAAM;QACN,KAAK;QACL,uBAAuB,EAAE,KAAK;KAC/B,CAAC;IAEF,6EAA6E;IAC7E,IAAI,WAAW,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QAC3B,IAAI,CAAC,MAAM,GAAG,YAAY,CAAC,WAAW,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,IAAI,IAAI,CAAC;IAC3D,CAAC;IAED,2DAA2D;IAC3D,KAAK,MAAM,MAAM,IAAI,OAAO,CAAC,IAAI,EAAE,EAAE,CAAC;QACpC,MAAM,KAAK,GAAG,OAAO,CAAC,IAAI,CAAC,OAAO,EAAE,MAAM,CAAC,EAAE,QAAQ,EAAE,IAAI,EAAE,KAAK,GAAG,CAAC,EAAE,WAAW,CAAC,CAAC;QACrF,IAAI,CAAC,QAAQ,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;QAC1B,IAAI,KAAK,CAAC,MAAM,KAAK,IAAI,IAAI,KAAK,CAAC,uBAAuB,EAAE,CAAC;YAC3D,IAAI,CAAC,uBAAuB,GAAG,IAAI,CAAC;QACtC,CAAC;IACH,CAAC;IAED,OAAO,IAAI,CAAC;AACd,CAAC;AAED,MAAM,UAAU,WAAW,CAAC,IAAgB;IAC1C,MAAM,MAAM,GAAiB,EAAE,CAAC;IAChC,MAAM,KAAK,GAAiB,CAAC,IAAI,CAAC,CAAC;IACnC,OAAO,KAAK,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QACxB,MAAM,IAAI,GAAG,KAAK,CAAC,GAAG,EAAG,CAAC;QAC1B,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QAClB,KAAK,MAAM,KAAK,IAAI,CAAC,GAAG,IAAI,CAAC,QAAQ,CAAC,CAAC,OAAO,EAAE,EAAE,CAAC;YACjD,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;QACpB,CAAC;IACH,CAAC;IACD,OAAO,MAAM,CAAC;AAChB,CAAC"}

package/dist/core/impl-reader.d.ts

@@ -4,5 +4,6 @@ export interface ImplData {
     sourceFiles: string[];
     commits: string[];
     testFiles: string[];
+    dependsOn: string[];
 }
 export declare function parseImplData(doc: ParsedMarkdown): ImplData;

package/dist/core/impl-reader.js

@@ -25,15 +25,23 @@ export function parseImplData(doc) {
     const sourceSection = doc.sections.get('source files');
     const commitsSection = doc.sections.get('commits');
     const testsSection = doc.sections.get('tests');
+    const dependsOnSection = doc.sections.get('depends on');
     // Behaviour ref: first non-empty line of the Behaviour section
     const behaviourRef = behaviourSection?.bodyLines
         .map(l => l.trim())
         .find(l => l.length > 0) ?? null;
+    // Depends On: list items or plain lines, stripped of leading "- "
+    const dependsOn = (dependsOnSection?.bodyLines ?? [])
+        .map(l => l.trim())
+        .filter(l => l.length > 0)
+        .map(l => (l.startsWith('- ') ? l.slice(2).trim() : l))
+        .filter(l => l.length > 0);
     return {
         behaviourRef,
         sourceFiles: extractFilePaths(sourceSection?.bodyLines ?? []),
         commits: extractCommitHashes(commitsSection?.bodyLines ?? []),
         testFiles: extractFilePaths(testsSection?.bodyLines ?? []),
+        dependsOn,
     };
 }
 //# sourceMappingURL=impl-reader.js.map

package/dist/core/impl-reader.js.map

@@ -1 +1 @@
-{"version":3,"file":"impl-reader.js","sourceRoot":"","sources":["../../src/core/impl-reader.ts"],"names":[],"mappings":"AASA,qHAAqH;AACrH,SAAS,UAAU,CAAC,KAAa;IAC/B,OAAO,KAAK,CAAC,QAAQ,CAAC,GAAG,CAAC,IAAI,QAAQ,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;AACrD,CAAC;AAED,iFAAiF;AACjF,SAAS,qBAAqB,CAAC,KAAe;IAC5C,MAAM,MAAM,GAAa,EAAE,CAAC;IAC5B,KAAK,MAAM,IAAI,IAAI,KAAK,EAAE,CAAC;QACzB,MAAM,KAAK,GAAG,WAAW,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QACrC,IAAI,KAAK,EAAE,CAAC,CAAC,CAAC;YAAE,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;IACxC,CAAC;IACD,OAAO,MAAM,CAAC;AAChB,CAAC;AAED,8JAA8J;AAC9J,SAAS,gBAAgB,CAAC,KAAe;IACvC,OAAO,qBAAqB,CAAC,KAAK,CAAC,CAAC,MAAM,CAAC,UAAU,CAAC,CAAC;AACzD,CAAC;AAED,wEAAwE;AACxE,SAAS,mBAAmB,CAAC,KAAe;IAC1C,OAAO,qBAAqB,CAAC,KAAK,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,mBAAmB,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC;AAC/E,CAAC;AAED,MAAM,UAAU,aAAa,CAAC,GAAmB;IAC/C,MAAM,gBAAgB,GAAG,GAAG,CAAC,QAAQ,CAAC,GAAG,CAAC,WAAW,CAAC,CAAC;IACvD,MAAM,aAAa,GAAG,GAAG,CAAC,QAAQ,CAAC,GAAG,CAAC,cAAc,CAAC,CAAC;IACvD,MAAM,cAAc,GAAG,GAAG,CAAC,QAAQ,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC;IACnD,MAAM,YAAY,GAAG,GAAG,CAAC,QAAQ,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;IAE/C,+DAA+D;IAC/D,MAAM,YAAY,GAAG,gBAAgB,EAAE,SAAS;SAC7C,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;SAClB,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,MAAM,GAAG,CAAC,CAAC,IAAI,IAAI,CAAC;IAEnC,OAAO;QACL,YAAY;QACZ,WAAW,EAAE,gBAAgB,CAAC,aAAa,EAAE,SAAS,IAAI,EAAE,CAAC;QAC7D,OAAO,EAAE,mBAAmB,CAAC,cAAc,EAAE,SAAS,IAAI,EAAE,CAAC;QAC7D,SAAS,EAAE,gBAAgB,CAAC,YAAY,EAAE,SAAS,IAAI,EAAE,CAAC;KAC3D,CAAC;AACJ,CAAC"}
+{"version":3,"file":"impl-reader.js","sourceRoot":"","sources":["../../src/core/impl-reader.ts"],"names":[],"mappings":"AAUA,qHAAqH;AACrH,SAAS,UAAU,CAAC,KAAa;IAC/B,OAAO,KAAK,CAAC,QAAQ,CAAC,GAAG,CAAC,IAAI,QAAQ,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;AACrD,CAAC;AAED,iFAAiF;AACjF,SAAS,qBAAqB,CAAC,KAAe;IAC5C,MAAM,MAAM,GAAa,EAAE,CAAC;IAC5B,KAAK,MAAM,IAAI,IAAI,KAAK,EAAE,CAAC;QACzB,MAAM,KAAK,GAAG,WAAW,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QACrC,IAAI,KAAK,EAAE,CAAC,CAAC,CAAC;YAAE,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;IACxC,CAAC;IACD,OAAO,MAAM,CAAC;AAChB,CAAC;AAED,8JAA8J;AAC9J,SAAS,gBAAgB,CAAC,KAAe;IACvC,OAAO,qBAAqB,CAAC,KAAK,CAAC,CAAC,MAAM,CAAC,UAAU,CAAC,CAAC;AACzD,CAAC;AAED,wEAAwE;AACxE,SAAS,mBAAmB,CAAC,KAAe;IAC1C,OAAO,qBAAqB,CAAC,KAAK,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,mBAAmB,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC;AAC/E,CAAC;AAED,MAAM,UAAU,aAAa,CAAC,GAAmB;IAC/C,MAAM,gBAAgB,GAAG,GAAG,CAAC,QAAQ,CAAC,GAAG,CAAC,WAAW,CAAC,CAAC;IACvD,MAAM,aAAa,GAAG,GAAG,CAAC,QAAQ,CAAC,GAAG,CAAC,cAAc,CAAC,CAAC;IACvD,MAAM,cAAc,GAAG,GAAG,CAAC,QAAQ,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC;IACnD,MAAM,YAAY,GAAG,GAAG,CAAC,QAAQ,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;IAC/C,MAAM,gBAAgB,GAAG,GAAG,CAAC,QAAQ,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC;IAExD,+DAA+D;IAC/D,MAAM,YAAY,GAAG,gBAAgB,EAAE,SAAS;SAC7C,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;SAClB,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,MAAM,GAAG,CAAC,CAAC,IAAI,IAAI,CAAC;IAEnC,kEAAkE;IAClE,MAAM,SAAS,GAAG,CAAC,gBAAgB,EAAE,SAAS,IAAI,EAAE,CAAC;SAClD,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;SAClB,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,MAAM,GAAG,CAAC,CAAC;SACzB,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,UAAU,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;SACtD,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC;IAE7B,OAAO;QACL,YAAY;QACZ,WAAW,EAAE,gBAAgB,CAAC,aAAa,EAAE,SAAS,IAAI,EAAE,CAAC;QAC7D,OAAO,EAAE,mBAAmB,CAAC,cAAc,EAAE,SAAS,IAAI,EAAE,CAAC;QAC7D,SAAS,EAAE,gBAAgB,CAAC,YAAY,EAAE,SAAS,IAAI,EAAE,CAAC;QAC1D,SAAS;KACV,CAAC;AACJ,CAAC"}

package/dist/core/paths.d.ts

@@ -0,0 +1,6 @@
+/**
+ * Returns the absolute path to the agent directory.
+ * New layout: <cwd>/taproot/agent/ (if exists)
+ * Old layout: <cwd>/.taproot/ (fallback)
+ */
+export declare function resolveAgentDir(cwd: string): string;

package/dist/core/paths.js

@@ -0,0 +1,12 @@
+import { existsSync } from 'fs';
+import { join } from 'path';
+/**
+ * Returns the absolute path to the agent directory.
+ * New layout: <cwd>/taproot/agent/ (if exists)
+ * Old layout: <cwd>/.taproot/ (fallback)
+ */
+export function resolveAgentDir(cwd) {
+    const newAgent = join(cwd, 'taproot', 'agent');
+    return existsSync(newAgent) ? newAgent : join(cwd, '.taproot');
+}
+//# sourceMappingURL=paths.js.map

package/dist/core/paths.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"paths.js","sourceRoot":"","sources":["../../src/core/paths.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,MAAM,IAAI,CAAC;AAChC,OAAO,EAAE,IAAI,EAAE,MAAM,MAAM,CAAC;AAE5B;;;;GAIG;AACH,MAAM,UAAU,eAAe,CAAC,GAAW;IACzC,MAAM,QAAQ,GAAG,IAAI,CAAC,GAAG,EAAE,SAAS,EAAE,OAAO,CAAC,CAAC;IAC/C,OAAO,UAAU,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,EAAE,UAAU,CAAC,CAAC;AACjE,CAAC"}

package/dist/core/test-cache.js

@@ -173,7 +173,7 @@ export async function runTestsPassingWithCache(options) {
         return {
             passed: false,
             output: result.summary,
-            correction: `tests-passing blocked: test command timed out after ${timeoutSecs}s. Increase testTimeout in .taproot/settings.yaml if needed.`,
+            correction: `tests-passing blocked: test command timed out after ${timeoutSecs}s. Increase testTimeout in taproot/settings.yaml if needed.`,
         };
     }
     return {

package/dist/core/test-cache.js.map

@@ -1 +1 @@
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package/dist/core/version-check.d.ts

@@ -0,0 +1,9 @@
+/**
+ * Compares the installed taproot version against the project's pinned taproot_version
+ * in taproot/settings.yaml. Emits a warning to stderr when they diverge.
+ *
+ * Skipped silently when:
+ *  - taproot/settings.yaml does not exist (not a taproot project)
+ *  - taproot_version key is absent (project pre-dates version pinning)
+ */
+export declare function checkProjectVersion(cwd: string): void;

package/dist/core/version-check.js

@@ -0,0 +1,43 @@
+import { existsSync, readFileSync } from 'fs';
+import { join, dirname, resolve } from 'path';
+import { fileURLToPath } from 'url';
+import { createRequire } from 'module';
+const __dirname = dirname(fileURLToPath(import.meta.url));
+const require = createRequire(import.meta.url);
+function parseSemver(v) {
+    const parts = v.replace(/^v/, '').split('.').map(Number);
+    return [parts[0] ?? 0, parts[1] ?? 0, parts[2] ?? 0];
+}
+/**
+ * Compares the installed taproot version against the project's pinned taproot_version
+ * in taproot/settings.yaml. Emits a warning to stderr when they diverge.
+ *
+ * Skipped silently when:
+ *  - taproot/settings.yaml does not exist (not a taproot project)
+ *  - taproot_version key is absent (project pre-dates version pinning)
+ */
+export function checkProjectVersion(cwd) {
+    const settingsPath = join(cwd, 'taproot', 'settings.yaml');
+    if (!existsSync(settingsPath))
+        return;
+    const content = readFileSync(settingsPath, 'utf-8');
+    const match = content.match(/^taproot_version:\s*['"]?(\d[\d.]*\d)['"]?\s*$/m);
+    if (!match)
+        return;
+    const projectVersion = match[1];
+    const { version: installed } = require(resolve(__dirname, '..', '..', 'package.json'));
+    const [instMaj, instMin] = parseSemver(installed);
+    const [projMaj, projMin] = parseSemver(projectVersion);
+    if (instMaj < projMaj || (instMaj === projMaj && instMin < projMin)) {
+        process.stderr.write(`taproot: project requires ${projectVersion}, installed is ${installed}\n` +
+            `  → run: npm install -g @imix-js/taproot@${projectVersion}\n`);
+    }
+    else if (instMaj > projMaj) {
+        process.stderr.write(`taproot: installed ${installed} is a major version ahead of this project (pinned at ${projectVersion})\n` +
+            `  → run: taproot update  — to sync skills and record the new version\n`);
+    }
+    else if (instMin > projMin) {
+        process.stderr.write(`taproot: installed ${installed}, project at ${projectVersion} — run: taproot update\n`);
+    }
+}
+//# sourceMappingURL=version-check.js.map

package/dist/core/version-check.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"version-check.js","sourceRoot":"","sources":["../../src/core/version-check.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,YAAY,EAAE,MAAM,IAAI,CAAC;AAC9C,OAAO,EAAE,IAAI,EAAE,OAAO,EAAE,OAAO,EAAE,MAAM,MAAM,CAAC;AAC9C,OAAO,EAAE,aAAa,EAAE,MAAM,KAAK,CAAC;AACpC,OAAO,EAAE,aAAa,EAAE,MAAM,QAAQ,CAAC;AAEvC,MAAM,SAAS,GAAG,OAAO,CAAC,aAAa,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC;AAC1D,MAAM,OAAO,GAAG,aAAa,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;AAE/C,SAAS,WAAW,CAAC,CAAS;IAC5B,MAAM,KAAK,GAAG,CAAC,CAAC,OAAO,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC;IACzD,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE,KAAK,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE,KAAK,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC;AACvD,CAAC;AAED;;;;;;;GAOG;AACH,MAAM,UAAU,mBAAmB,CAAC,GAAW;IAC7C,MAAM,YAAY,GAAG,IAAI,CAAC,GAAG,EAAE,SAAS,EAAE,eAAe,CAAC,CAAC;IAC3D,IAAI,CAAC,UAAU,CAAC,YAAY,CAAC;QAAE,OAAO;IAEtC,MAAM,OAAO,GAAG,YAAY,CAAC,YAAY,EAAE,OAAO,CAAC,CAAC;IACpD,MAAM,KAAK,GAAG,OAAO,CAAC,KAAK,CAAC,iDAAiD,CAAC,CAAC;IAC/E,IAAI,CAAC,KAAK;QAAE,OAAO;IAEnB,MAAM,cAAc,GAAG,KAAK,CAAC,CAAC,CAAE,CAAC;IACjC,MAAM,EAAE,OAAO,EAAE,SAAS,EAAE,GAAG,OAAO,CAAC,OAAO,CAAC,SAAS,EAAE,IAAI,EAAE,IAAI,EAAE,cAAc,CAAC,CAAwB,CAAC;IAE9G,MAAM,CAAC,OAAO,EAAE,OAAO,CAAC,GAAG,WAAW,CAAC,SAAS,CAAC,CAAC;IAClD,MAAM,CAAC,OAAO,EAAE,OAAO,CAAC,GAAG,WAAW,CAAC,cAAc,CAAC,CAAC;IAEvD,IAAI,OAAO,GAAG,OAAO,IAAI,CAAC,OAAO,KAAK,OAAO,IAAI,OAAO,GAAG,OAAO,CAAC,EAAE,CAAC;QACpE,OAAO,CAAC,MAAM,CAAC,KAAK,CAClB,6BAA6B,cAAc,kBAAkB,SAAS,IAAI;YAC1E,4CAA4C,cAAc,IAAI,CAC/D,CAAC;IACJ,CAAC;SAAM,IAAI,OAAO,GAAG,OAAO,EAAE,CAAC;QAC7B,OAAO,CAAC,MAAM,CAAC,KAAK,CAClB,sBAAsB,SAAS,wDAAwD,cAAc,KAAK;YAC1G,wEAAwE,CACzE,CAAC;IACJ,CAAC;SAAM,IAAI,OAAO,GAAG,OAAO,EAAE,CAAC;QAC7B,OAAO,CAAC,MAAM,CAAC,KAAK,CAClB,sBAAsB,SAAS,gBAAgB,cAAc,0BAA0B,CACxF,CAAC;IACJ,CAAC;AACH,CAAC"}

package/dist/validators/structure-rules.d.ts

@@ -5,6 +5,7 @@ export declare function checkBehaviourParent(node: FolderNode): Violation[];
 export declare function checkImplParent(node: FolderNode): Violation[];
 export declare function checkOrphanFolder(node: FolderNode): Violation[];
 export declare function checkEmptyFolder(node: FolderNode): Violation[];
+export declare function checkGlobalTruthsIntent(root: FolderNode): Violation[];
 export declare function validateStructure(root: FolderNode, options: {
     strict: boolean;
 }): Violation[];

package/dist/validators/structure-rules.js

@@ -1,4 +1,5 @@
 import { join } from 'path';
+import { existsSync } from 'fs';
 import { flattenTree } from '../core/fs-walker.js';
 const KEBAB_CASE = /^[a-z0-9]+(-[a-z0-9]+)*$/;
 export function checkDuplicateMarkers(node) {
@@ -76,9 +77,23 @@ export function checkEmptyFolder(node) {
             message: `${node.marker} folder "${node.name}" has no child folders`,
         }];
 }
+export function checkGlobalTruthsIntent(root) {
+    const globalTruthsIntentPath = join(root.absolutePath, 'global-truths', 'intent.md');
+    if (!existsSync(globalTruthsIntentPath))
+        return [];
+    return [{
+            type: 'warning',
+            filePath: globalTruthsIntentPath,
+            code: 'GLOBAL_TRUTHS_INTENT_CONFLICT',
+            message: '`global-truths/` is a taproot-managed truth store — `intent.md` does not belong here. ' +
+                'Remove `global-truths/intent.md` (and any behaviours beneath it) and use truth files + ' +
+                '`check-if-affected-by` entries in `taproot/settings.yaml` to enforce them instead.',
+        }];
+}
 export function validateStructure(root, options) {
     const violations = [];
     const nodes = flattenTree(root);
+    violations.push(...checkGlobalTruthsIntent(root));
     for (const node of nodes) {
         violations.push(...checkDuplicateMarkers(node));
         if (node !== root)

package/dist/validators/structure-rules.js.map

@@ -1 +1 @@
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package/docs/agents.md

@@ -52,12 +52,12 @@ After `taproot init --agent claude --with-skills`, skills are available as `/tr-
 
 ### How skills work
 
-Skills are portable markdown files installed to `.taproot/skills/`. They are not IDE plugins or extensions — any agent that can read files can follow a skill. The Claude Code adapter generates `.claude/commands/tr-*.md` files that reference the skills; invoking `/tr-intent` tells Claude to load and follow `skills/intent.md`.
+Skills are portable markdown files installed to `taproot/agent/skills/`. They are not IDE plugins or extensions — any agent that can read files can follow a skill. The Claude Code adapter generates `.claude/commands/tr-*.md` files that reference the skills; invoking `/tr-intent` tells Claude to load and follow `taproot/agent/skills/intent.md`.
 
 This means:
 - Skills work even if the Claude Code extension is updated or changed
 - You can read any skill file to understand exactly what the agent will do
-- You can customise a skill by editing its file in `.taproot/skills/`
+- You can customise a skill by editing its file in `taproot/agent/skills/`
 - Skills stay in sync with Taproot via `taproot update`
 
 ### Updating skills

package/docs/architecture.md

@@ -22,9 +22,9 @@ Architectural decisions, constraints, and patterns for the taproot codebase. Eve
 
 **No global mutable state** — No module-level variables that accumulate state across calls. Functions that need shared state receive it as parameters.
 
-**`taproot/` contains only requirement documents** — Skills, config, and framework files live in `.taproot/`. Never mix framework files into the requirements hierarchy.
+**Unified `taproot/` directory layout** — All taproot content lives under `taproot/`: requirement documents in `taproot/specs/` (or directly under `taproot/` with a custom `root:` setting), agent skills and docs in `taproot/agent/`, and global truths in `taproot/global-truths/`. Settings live at `taproot/settings.yaml`. The `.taproot/` directory is reserved for gitignored runtime scratch only (session state, test result cache, truth-check sessions).
 
-**`taproot/_sessions/` is the scratch space for agent session state** — Skills that persist resumable session data (phase progress, confirmed items, open questions) write to `taproot/_sessions/<skill-name>-status.md`. This folder is not a formal hierarchy document and is excluded from `taproot validate-structure`. Use `_sessions/`, not `_brainstorms/` — the latter implies ideation rather than structured state.
+**`.taproot/` is runtime scratch, not content** — Files written by CLI invocations that should not be committed (session state, `.truth-check-session`, `.test-results/`) go in `.taproot/`. Add `.taproot/` to `.gitignore`. Never place spec documents, skill files, or configuration there.
 
 **Markdown is the schema** — All hierarchy documents (intent.md, usecase.md, impl.md) must be valid CommonMark. No proprietary extensions.
 
@@ -50,4 +50,4 @@ Core modules must not import from commands. Commands may import from core, valid
 
 ## Testing
 
-Integration tests use real temporary directories (`mkdtempSync`) — no mocking the filesystem. Config in tests must be written to `.taproot/settings.yaml` (not `.taproot/settings.yaml`).
+Integration tests use real temporary directories (`mkdtempSync`) — no mocking the filesystem. Config in tests must be written to `taproot/settings.yaml` (matching the layout that `taproot init` now creates).

package/docs/cli.md

@@ -12,7 +12,7 @@ The Taproot CLI handles setup, validation, and reporting. It does not generate c
 taproot init [--with-hooks] [--with-ci github|gitlab] [--with-skills] [--agent claude|cursor|copilot|windsurf|generic|all] [--template webapp|book-authoring|cli-tool] [--force]
 ```
 
-Initializes Taproot in the current directory. Creates `taproot/` and `.taproot/settings.yaml` if they don't exist, then installs whichever integrations you request.
+Initializes Taproot in the current directory. Creates `taproot/` with `specs/`, `global-truths/`, and `agent/` subdirectories; writes `taproot/settings.yaml`. Then installs whichever integrations you request.
 
 When run on an empty project (no `taproot/` directory yet), the command prompts: **"Start from a template? [y/N]"** — entering `y` presents a list of starter hierarchies to choose from.
 
@@ -21,10 +21,10 @@ When run on an empty project (no `taproot/` directory yet), the command prompts:
 | `--with-hooks` | Installs `.git/hooks/pre-commit` running `taproot commithook` |
 | `--with-ci github` | Generates `.github/workflows/taproot.yml` with validate-structure, validate-format, and check-orphans |
 | `--with-ci gitlab` | Generates a `taproot-validate` job in `.gitlab-ci.yml` |
-| `--with-skills` | Copies skill definitions to `.taproot/skills/`. Implied by `--agent claude` — only needed if you want skills without a Claude adapter. |
+| `--with-skills` | Copies skill definitions to `taproot/agent/skills/`. Implied by `--agent claude` — only needed if you want skills without a Claude adapter. |
 | `--agent <name>` | Generates agent adapter files (see [Agent Setup](agents.md)) |
-| `--template <type>` | Skip the prompt and apply a starter template directly (`webapp`, `book-authoring`, or `cli-tool`). Copies the starter's `taproot/` hierarchy and `.taproot/settings.yaml` into the project. |
-| `--force` | When used with `--template`, overwrites an existing `.taproot/settings.yaml` with the template's version. |
+| `--template <type>` | Skip the prompt and apply a starter template directly (`webapp`, `book-authoring`, or `cli-tool`). Copies the starter's `taproot/` hierarchy and `taproot/settings.yaml` into the project. |
+| `--force` | When used with `--template`, overwrites an existing `taproot/settings.yaml` with the template's version. |
 
 Running `taproot init` again on an existing project is safe — it skips files that already exist and reports `exists` for each.
 
@@ -38,7 +38,7 @@ Refreshes installed agent adapters and skills to the current version. Run this a
 
 The update command also:
 - Removes stale artefacts from older Taproot layouts (e.g., the pre-v0.1 `taproot/skills/` directory)
-- Refreshes `.taproot/docs/` with the current taproot documentation (patterns, architecture, security, etc.) so agent skills have up-to-date reference material
+- Refreshes `taproot/agent/docs/` with the current taproot documentation (patterns, architecture, security, etc.) so agent skills have up-to-date reference material
 - Runs a cross-link refresh: adds missing `## Behaviours <!-- taproot-managed -->` sections to `intent.md` files and `## Implementations <!-- taproot-managed -->` sections to `usecase.md` files, then appends any missing child links and prunes any links to non-existent files
 - Migrates old `taproot validate-structure` / `taproot validate-format` pre-commit hooks to the newer `taproot commithook` format
 
@@ -174,7 +174,7 @@ taproot dod [impl-path] [--dry-run] [--rerun-tests]
 taproot dod <impl-path> --resolve <condition> --note "<text>" [--resolve <condition> --note "<text>" ...]
 ```
 
-Runs all configured DoD conditions from `.taproot/settings.yaml` against the specified implementation (or all implementations if no path is given). If all conditions pass and an `impl-path` is provided, marks the impl `complete`, records the results in `## DoD Resolutions`, and automatically advances the parent `usecase.md` state from `specified` to `implemented` if it hasn't been already.
+Runs all configured DoD conditions from `taproot/settings.yaml` against the specified implementation (or all implementations if no path is given). If all conditions pass and an `impl-path` is provided, marks the impl `complete`, records the results in `## DoD Resolutions`, and automatically advances the parent `usecase.md` state from `specified` to `implemented` if it hasn't been already.
 
 Use `--resolve`/`--note` to record agent resolutions for agent-driven conditions (e.g. `document-current`, `check-if-affected`, `check-if-affected-by`). Multiple pairs can be supplied in a single invocation — conditions are paired with notes by position.
 
@@ -204,7 +204,7 @@ The hook uses a three-tier classification, where the implementation tier is dete
 | Source files found in map but `impl.md` NOT staged | **Blocked** — "Stage `impl.md` alongside your source files. No implementation commit should proceed without its traceability record." |
 | No tracked source files, no hierarchy or impl files | No checks; commit proceeds |
 
-The DoR gate prevents committing an implementation record before the behaviour is fully specified. The DoD gate prevents marking an implementation complete without passing the quality checks defined in `.taproot/settings.yaml`.
+The DoR gate prevents committing an implementation record before the behaviour is fully specified. The DoD gate prevents marking an implementation complete without passing the quality checks defined in `taproot/settings.yaml`.
 
 **Truth consistency check:** when hierarchy files are staged and `taproot/global-truths/` exists, the hook validates that a truth-check session marker (`.taproot/.truth-check-session`) is present and matches the current staged content. This marker is written by `taproot truth-sign`, which `/tr-commit` calls after the agent approves the truth check. Committing hierarchy files directly with `git commit` (bypassing `/tr-commit`) will be blocked if applicable truths exist.
 

package/docs/configuration.md

@@ -2,11 +2,11 @@
 
 ## Quick discovery
 
-- **In your project:** `.taproot/CONFIGURATION.md` — installed and refreshed by `taproot update`, documents all `settings.yaml` options with examples and whether each requires re-running `taproot update`
-- **From the CLI:** `taproot --help` includes a footer pointing to `.taproot/settings.yaml` and `.taproot/CONFIGURATION.md`
+- **In your project:** `taproot/agent/CONFIGURATION.md` — installed and refreshed by `taproot update`, documents all `settings.yaml` options with examples and whether each requires re-running `taproot update`
+- **From the CLI:** `taproot --help` includes a footer pointing to `taproot/settings.yaml` and `taproot/agent/CONFIGURATION.md`
 - **Full reference:** this document
 
-## `.taproot/settings.yaml`
+## `taproot/settings.yaml`
 
 Created by `taproot init`. All settings have defaults — you only need to add what you want to override.
 
@@ -70,7 +70,7 @@ The `definitionOfDone` list controls what `taproot dod` checks and what the pre-
 | `document-current: <description>` | Agent-verified: the agent checks whether the described documentation is current and applies updates if needed. |
 | `check-if-affected: <file>` | Agent-verified: the agent reviews whether the given file needed updating as a result of this implementation and applies changes if needed. |
 | `check-if-affected-by: <behaviour-path>` | Agent-verified: the agent reads the referenced behaviour spec and determines whether it applies to this implementation — verifying compliance if it does, recording "not applicable" if it does not. Use for cross-cutting requirements that every implementation of a given type must satisfy (e.g. every new skill must satisfy `human-integration/contextual-next-steps`). |
-| `check: <free-form question>` | Agent-verified: the agent reads the question, reasons whether the answer is yes, no, or not applicable for this specific implementation, and takes any indicated action (e.g. adds an entry to `.taproot/settings.yaml`, documents a new pattern). The two default entries in `.taproot/settings.yaml` cover the most common meta-questions. |
+| `check: <free-form question>` | Agent-verified: the agent reads the question, reasons whether the answer is yes, no, or not applicable for this specific implementation, and takes any indicated action (e.g. adds an entry to `taproot/settings.yaml`, documents a new pattern). The two default entries in `taproot/settings.yaml` cover the most common meta-questions. |
 | `run: <command>` | Custom shell command. Exit 0 = pass, any other exit code = fail. |
 
 You can give any condition a custom name with `name: <label>`, which is used in DoD reports:
@@ -92,7 +92,7 @@ Results are recorded in the `## DoD Resolutions` section of `impl.md`. The secti
 
 ### Built-in cross-cutting DoD conditions
 
-Taproot's own `.taproot/settings.yaml` ships with several `check-if-affected-by` conditions that enforce project-wide quality rules. These serve as reference examples:
+Taproot's own `taproot/settings.yaml` ships with several `check-if-affected-by` conditions that enforce project-wide quality rules. These serve as reference examples:
 
 | Condition | What it enforces |
 |-----------|-----------------|
@@ -121,7 +121,7 @@ autonomous: true   # all sessions in this repo run without confirmation prompts
 - Test failures or hook rejections are recorded in `impl.md` (impl marked `needs-rework`) and the agent stops — the developer returns to a clear failure report
 
 **Three activation mechanisms (in order of scope):**
-1. `autonomous: true` in `.taproot/settings.yaml` — repo-wide, all sessions
+1. `autonomous: true` in `taproot/settings.yaml` — repo-wide, all sessions
 2. `TAPROOT_AUTONOMOUS=1` environment variable — per process invocation
 3. `--autonomous` flag on a skill invocation (e.g. `/tr-implement path/ --autonomous`) — per skill