@imenam/mcp-documentor 1.0.41 → 1.0.43

package/dist/shared/schemas/doc.schema.d.ts

@@ -5,6 +5,7 @@ export declare const TrackedSectionSchema: z.ZodObject<{
         bottom: z.ZodArray<z.ZodString>;
     }, z.core.$strip>;
     sectionHash: z.ZodString;
+    lineCount: z.ZodOptional<z.ZodNumber>;
 }, z.core.$strip>;
 export type TrackedSection = z.infer<typeof TrackedSectionSchema>;
 export declare const TrackedFileSchema: z.ZodObject<{
@@ -17,6 +18,7 @@ export declare const TrackedFileSchema: z.ZodObject<{
             bottom: z.ZodArray<z.ZodString>;
         }, z.core.$strip>;
         sectionHash: z.ZodString;
+        lineCount: z.ZodOptional<z.ZodNumber>;
     }, z.core.$strip>>>;
 }, z.core.$strip>;
 export type TrackedFile = z.infer<typeof TrackedFileSchema>;
@@ -46,6 +48,7 @@ export declare const DocSchema: z.ZodObject<{
                 bottom: z.ZodArray<z.ZodString>;
             }, z.core.$strip>;
             sectionHash: z.ZodString;
+            lineCount: z.ZodOptional<z.ZodNumber>;
         }, z.core.$strip>>>;
     }, z.core.$strip>>>;
     tags: z.ZodDefault<z.ZodArray<z.ZodString>>;

package/dist/shared/schemas/doc.schema.js

@@ -5,6 +5,7 @@ export const TrackedSectionSchema = z.object({
         bottom: z.array(z.string()),
     }),
     sectionHash: z.string(),
+    lineCount: z.number().optional(),
 });
 export const TrackedFileSchema = z.object({
     path: z.string(),
@@ -75,7 +76,7 @@ export const SearchDocsArgsSchema = z.object({
 });
 export const RefreshFileSnapshotArgsSchema = z.object({
     paths: z.array(z.string()).min(1).describe("Paths of documentation entries to refresh, e.g. ['backend/auth/authentication', 'setup']"),
-    file_paths: z.array(z.string()).optional().describe("Specific tracked file paths to refresh (refreshes all tracked files if omitted)"),
+    file_paths: z.array(z.string()).optional().describe("Specific tracked file paths to refresh, as absolute paths (refreshes all tracked files if omitted)"),
 });
 export const GetDocMetadataArgsSchema = z.object({
     path: z.string().describe("Path of the documentation entry, e.g. 'backend/auth/authentication'"),

package/dist/src/core/section-tracker.d.ts

@@ -2,7 +2,9 @@ import type { TrackedSection } from "../../shared/schemas/doc.schema.js";
 /**
  * Reads a file and snapshots a section defined by 1-indexed [start, end] line numbers.
  * Extracts top/bottom anchor lines and computes a hash of the section content.
- * The `lines` input is intentionally not persisted — only anchors and sectionHash are stored.
+ * The `lines` input is intentionally not persisted — only anchors, sectionHash, and lineCount are stored.
+ * `lineCount` is used by findAndHashSection to constrain the bottom anchor search and prevent
+ * false matches when the file contains repeated lines.
  */
 export declare function snapshotSection(absolutePath: string, start: number, end: number): TrackedSection;
 type FindResult = {

package/dist/src/core/section-tracker.js

@@ -1,10 +1,14 @@
 import crypto from "crypto";
 import fs from "fs";
 const ANCHOR_SIZE = 3;
+// Tolerance (in lines) around the expected bottom anchor position when lineCount is known.
+const BOTTOM_ANCHOR_TOLERANCE = 10;
 /**
  * Reads a file and snapshots a section defined by 1-indexed [start, end] line numbers.
  * Extracts top/bottom anchor lines and computes a hash of the section content.
- * The `lines` input is intentionally not persisted — only anchors and sectionHash are stored.
+ * The `lines` input is intentionally not persisted — only anchors, sectionHash, and lineCount are stored.
+ * `lineCount` is used by findAndHashSection to constrain the bottom anchor search and prevent
+ * false matches when the file contains repeated lines.
  */
 export function snapshotSection(absolutePath, start, end) {
     const fileContent = fs.readFileSync(absolutePath, "utf-8");
@@ -24,7 +28,7 @@ export function snapshotSection(absolutePath, start, end) {
         bottom = sectionLines.slice(sectionLines.length - ANCHOR_SIZE);
     }
     const sectionHash = crypto.createHash("sha256").update(sectionLines.join("\n")).digest("hex");
-    return { anchors: { top, bottom }, sectionHash };
+    return { anchors: { top, bottom }, sectionHash, lineCount: sectionLines.length };
 }
 /**
  * Locates a tracked section in the current file content using its stored anchors,
@@ -50,12 +54,23 @@ export function findAndHashSection(absolutePath, section) {
         }
         return { found: false };
     }
-    // Normal path: locate top anchor, then search for bottom anchor below it
+    // Normal path: locate top anchor, then search for bottom anchor below it.
+    // If lineCount is stored, constrain the search window to prevent false matches on repeated lines.
     for (let i = 0; i <= fileLines.length - top.length; i++) {
         if (!top.every((line, j) => fileLines[i + j] === line))
             continue;
         const searchStart = i + top.length;
-        for (let k = searchStart; k <= fileLines.length - bottom.length; k++) {
+        // Constrain bottom anchor search when lineCount is known
+        const expectedBottomStart = section.lineCount !== undefined
+            ? i + section.lineCount - bottom.length
+            : undefined;
+        const kMin = expectedBottomStart !== undefined
+            ? Math.max(searchStart, expectedBottomStart - BOTTOM_ANCHOR_TOLERANCE)
+            : searchStart;
+        const kMax = expectedBottomStart !== undefined
+            ? Math.min(fileLines.length - bottom.length, expectedBottomStart + BOTTOM_ANCHOR_TOLERANCE)
+            : fileLines.length - bottom.length;
+        for (let k = kMin; k <= kMax; k++) {
             if (!bottom.every((line, j) => fileLines[k + j] === line))
                 continue;
             const sectionLines = fileLines.slice(i, k + bottom.length);
@@ -87,12 +102,21 @@ export function relocateAndRefreshSection(absolutePath, section) {
         if (!top.every((line, j) => fileLines[i + j] === line))
             continue;
         const searchStart = i + top.length;
-        for (let k = searchStart; k <= fileLines.length - bottom.length; k++) {
+        const expectedBottomStart = section.lineCount !== undefined
+            ? i + section.lineCount - bottom.length
+            : undefined;
+        const kMin = expectedBottomStart !== undefined
+            ? Math.max(searchStart, expectedBottomStart - BOTTOM_ANCHOR_TOLERANCE)
+            : searchStart;
+        const kMax = expectedBottomStart !== undefined
+            ? Math.min(fileLines.length - bottom.length, expectedBottomStart + BOTTOM_ANCHOR_TOLERANCE)
+            : fileLines.length - bottom.length;
+        for (let k = kMin; k <= kMax; k++) {
             if (!bottom.every((line, j) => fileLines[k + j] === line))
                 continue;
             const sectionLines = fileLines.slice(i, k + bottom.length);
             const sectionHash = crypto.createHash("sha256").update(sectionLines.join("\n")).digest("hex");
-            return { found: true, refreshed: { anchors: section.anchors, sectionHash } };
+            return { found: true, refreshed: { anchors: section.anchors, sectionHash, lineCount: sectionLines.length } };
         }
     }
     return { found: false };

package/dist/src/gui-worker.js

@@ -25,6 +25,7 @@ const rootDir = findProjectRoot(__dirname);
 const dataDir = process.env.MCP_DATA_DIR?.trim() || path.join(rootDir, ".docs-data");
 const staticRoot = path.join(rootDir, "gui/dist");
 const absoluteStaticRoot = path.resolve(staticRoot);
+const configuredAppPath = process.env.APP_PATH || "/documentor-gui";
 setupLogging({ processLabel: "mcp-documentor:GUI", logDir: path.join(rootDir, ".docs-data", "logs") });
 const logger = createLogger("mcp-documentor:GUI");
 process.on("uncaughtException", (err) => {
@@ -389,6 +390,7 @@ app.get("/api/export-zip/:id", async (c) => {
         }
     }
     catch { /* use default */ }
+    const flat = c.req.query('flat') === '1';
     const zip = new JSZip();
     for (const ref of bundle.docs) {
         let project;
@@ -415,7 +417,8 @@ app.get("/api/export-zip/:id", async (c) => {
                 content = `# [Read error: ${ref}]\n`;
             }
         }
-        zip.file(`${project}/${docId}.md`, content);
+        const zipPath = flat ? `${docId.split('/').pop()}.md` : `${project}/${docId}.md`;
+        zip.file(zipPath, content);
     }
     const zipBuffer = await zip.generateAsync({ type: "nodebuffer" });
     return new Response(new Uint8Array(zipBuffer), {
@@ -428,6 +431,10 @@ app.get("/api/export-zip/:id", async (c) => {
 });
 // Static files
 app.use("/assets/*", serveStatic({ root: path.relative(process.cwd(), absoluteStaticRoot) }));
+function getHtmlBaseHref(appPath) {
+    const normalized = appPath.startsWith("/") ? appPath : `/${appPath}`;
+    return normalized.endsWith("/") ? normalized : `${normalized}/`;
+}
 // SPA Fallback
 app.get("/*", (c, next) => {
     const urlPath = c.req.path;
@@ -437,7 +444,10 @@ app.get("/*", (c, next) => {
     try {
         const indexPath = path.join(absoluteStaticRoot, "index.html");
         if (fs.existsSync(indexPath)) {
-            const html = fs.readFileSync(indexPath, "utf8");
+            const baseHref = getHtmlBaseHref(configuredAppPath);
+            const html = fs
+                .readFileSync(indexPath, "utf8")
+                .replace("<head>", `<head>\n    <base href="${baseHref}" />`);
             return c.html(html);
         }
         return c.text("GUI Build not found at " + absoluteStaticRoot, 404);
@@ -452,7 +462,7 @@ async function startServer() {
         process.exit(0);
     }
     const proxyUrl = process.env.PROXY_URL;
-    const appPath = process.env.APP_PATH || "/documentor-gui";
+    const appPath = configuredAppPath;
     const appName = process.env.APP_NAME || "MCP Documentor GUI";
     logger.info(`Starting server with proxyUrl=${proxyUrl}`);
     proxyClient = new ProxyClient(proxyUrl);

package/dist/src/tools/get-doc-metadata.js

@@ -26,7 +26,7 @@ export async function getDocMetadata(storageEngine, args) {
         if (doc.tracked_files.length > 0) {
             text += `\nTracked files (${doc.tracked_files.length} total):\n`;
             text += doc.tracked_files.map((f) => {
-                let entry = `  ${fileStatusIcon(f.path)} — ${f.path}\n  Snapshot: ${f.lastModifiedAt}`;
+                let entry = `  ${fileStatusIcon(f.path)} — ${f.path}\n  File mtime: ${f.lastModifiedAt}`;
                 if (f.sections && f.sections.length > 0) {
                     const sectionLines = f.sections.map((section, idx) => {
                         const result = findAndHashSection(f.path, section);

package/dist/src/tools/refresh-file-snapshot.js

@@ -17,8 +17,12 @@ export async function refreshFileSnapshot(storageEngine, historyStore, args) {
             const missing = [];
             const skipped = [];
             const anchorsLost = [];
+            // Normalize to forward slashes and lowercase for case-insensitive comparison on Windows
+            // (e.g. stored 'c:\...' vs provided 'C:\...'). file_paths must be absolute paths.
+            const norm = (p) => p.replace(/\\/g, "/").toLowerCase();
+            const resolvedFilePaths = validated.file_paths?.map(norm);
             for (const tracked of doc.tracked_files) {
-                if (validated.file_paths && !validated.file_paths.includes(tracked.path)) {
+                if (resolvedFilePaths && !resolvedFilePaths.includes(norm(tracked.path))) {
                     skipped.push(tracked.path);
                     continue;
                 }

package/dist/src/tools/search-docs.js

@@ -2,9 +2,9 @@ import { SearchDocsArgsSchema } from "../../shared/schemas/doc.schema.js";
 export async function searchDocs(storageEngine, embeddingEngine, args) {
     try {
         const validated = SearchDocsArgsSchema.parse(args);
-        const currentProject = storageEngine.getConfig().currentProject;
-        const results = await embeddingEngine.search(validated.query, currentProject, validated.top_k, async (id) => {
-            const doc = await storageEngine.getDoc(id);
+        const config = storageEngine.getConfig();
+        const results = await embeddingEngine.searchAcrossProjects(validated.query, config.projects, validated.top_k, async (project, docPath) => {
+            const doc = await storageEngine.getDoc(docPath, project);
             if (!doc)
                 return null;
             return { title: doc.title, content: doc.content };
@@ -13,7 +13,8 @@ export async function searchDocs(storageEngine, embeddingEngine, args) {
             return { content: [{ type: "text", text: "No matching documentation entries found." }] };
         }
         const lines = results.map((r, i) => {
-            return `${i + 1}. **${r.title}** [${r.id}] — score: ${(r.score * 100).toFixed(1)}%\n   ${r.excerpt}...`;
+            const projectTag = r.project && r.project !== config.currentProject ? ` _(project: ${r.project})_` : "";
+            return `${i + 1}. **${r.title}** [${r.id}]${projectTag} — score: ${(r.score * 100).toFixed(1)}%\n   ${r.excerpt}...`;
         });
         return {
             content: [{ type: "text", text: `Search results for "${validated.query}":\n\n${lines.join("\n\n")}` }],

package/dist/src/version.d.ts

@@ -1 +1 @@
-export declare const APP_VERSION = "1.0.41";
+export declare const APP_VERSION = "1.0.43";

package/dist/src/version.js

@@ -1,2 +1,2 @@
 // Auto-generated version file - do not edit manually
-export const APP_VERSION = '1.0.41';
+export const APP_VERSION = '1.0.43';

package/gui/dist/assets/_baseUniq-DZMSH6LY.js

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