@iloom/cli 0.3.0 → 0.3.1

package/dist/chunk-ML3NRPNB.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/lib/SettingsManager.ts"],"sourcesContent":["import { readFile } from 'fs/promises'\nimport path from 'path'\nimport os from 'os'\nimport { z } from 'zod'\nimport deepmerge from 'deepmerge'\nimport { logger } from '../utils/logger.js'\n\n/**\n * Zod schema for agent settings\n */\nexport const AgentSettingsSchema = z.object({\n\tmodel: z\n\t\t.enum(['sonnet', 'opus', 'haiku'])\n\t\t.optional()\n\t\t.describe('Claude model shorthand: sonnet, opus, or haiku'),\n\t// Future: could add other per-agent overrides\n})\n\n/**\n * Zod schema for workflow permission configuration\n */\nexport const WorkflowPermissionSchema = z.object({\n\tpermissionMode: z\n\t\t.enum(['plan', 'acceptEdits', 'bypassPermissions', 'default'])\n\t\t.optional()\n\t\t.describe('Permission mode for Claude CLI in this workflow type'),\n\tnoVerify: z\n\t\t.boolean()\n\t\t.optional()\n\t\t.describe('Skip pre-commit hooks (--no-verify) when committing during finish workflow'),\n\tstartIde: z\n\t\t.boolean()\n\t\t.default(true)\n\t\t.describe('Launch IDE (code) when starting this workflow type'),\n\tstartDevServer: z\n\t\t.boolean()\n\t\t.default(true)\n\t\t.describe('Launch development server when starting this workflow type'),\n\tstartAiAgent: z\n\t\t.boolean()\n\t\t.default(true)\n\t\t.describe('Launch Claude AI agent when starting this workflow type'),\n\tstartTerminal: z\n\t\t.boolean()\n\t\t.default(false)\n\t\t.describe('Launch terminal window without dev server when starting this workflow type'),\n})\n\n/**\n * Non-defaulting variant for pre-merge validation\n * This prevents Zod from polluting partial settings with default values before merge\n */\nexport const WorkflowPermissionSchemaNoDefaults = z.object({\n\tpermissionMode: z\n\t\t.enum(['plan', 'acceptEdits', 'bypassPermissions', 'default'])\n\t\t.optional()\n\t\t.describe('Permission mode for Claude CLI in this workflow type'),\n\tnoVerify: z\n\t\t.boolean()\n\t\t.optional()\n\t\t.describe('Skip pre-commit hooks (--no-verify) when committing during finish workflow'),\n\tstartIde: z\n\t\t.boolean()\n\t\t.optional()\n\t\t.describe('Launch IDE (code) when starting this workflow type'),\n\tstartDevServer: z\n\t\t.boolean()\n\t\t.optional()\n\t\t.describe('Launch development server when starting this workflow type'),\n\tstartAiAgent: z\n\t\t.boolean()\n\t\t.optional()\n\t\t.describe('Launch Claude AI agent when starting this workflow type'),\n\tstartTerminal: z\n\t\t.boolean()\n\t\t.optional()\n\t\t.describe('Launch terminal window without dev server when starting this workflow type'),\n})\n\n/**\n * Zod schema for workflows settings\n */\nexport const WorkflowsSettingsSchema = z\n\t.object({\n\t\tissue: WorkflowPermissionSchema.optional(),\n\t\tpr: WorkflowPermissionSchema.optional(),\n\t\tregular: WorkflowPermissionSchema.optional(),\n\t})\n\t.optional()\n\n/**\n * Non-defaulting variant for pre-merge validation\n */\nexport const WorkflowsSettingsSchemaNoDefaults = z\n\t.object({\n\t\tissue: WorkflowPermissionSchemaNoDefaults.optional(),\n\t\tpr: WorkflowPermissionSchemaNoDefaults.optional(),\n\t\tregular: WorkflowPermissionSchemaNoDefaults.optional(),\n\t})\n\t.optional()\n\n/**\n * Zod schema for capabilities settings\n */\nexport const CapabilitiesSettingsSchema = z\n\t.object({\n\t\tweb: z\n\t\t\t.object({\n\t\t\t\tbasePort: z\n\t\t\t\t\t.number()\n\t\t\t\t\t.min(1, 'Base port must be >= 1')\n\t\t\t\t\t.max(65535, 'Base port must be <= 65535')\n\t\t\t\t\t.optional()\n\t\t\t\t\t.describe('Base port for web workspace port calculations (default: 3000)'),\n\t\t\t})\n\t\t\t.optional(),\n\t\tdatabase: z\n\t\t\t.object({\n\t\t\t\tdatabaseUrlEnvVarName: z\n\t\t\t\t\t.string()\n\t\t\t\t\t.min(1, 'Database URL variable name cannot be empty')\n\t\t\t\t\t.regex(/^[A-Z_][A-Z0-9_]*$/, 'Must be valid env var name (uppercase, underscores)')\n\t\t\t\t\t.optional()\n\t\t\t\t\t.default('DATABASE_URL')\n\t\t\t\t\t.describe('Name of environment variable for database connection URL'),\n\t\t\t})\n\t\t\t.optional(),\n\t})\n\t.optional()\n\n/**\n * Non-defaulting variant for pre-merge validation\n */\nexport const CapabilitiesSettingsSchemaNoDefaults = z\n\t.object({\n\t\tweb: z\n\t\t\t.object({\n\t\t\t\tbasePort: z\n\t\t\t\t\t.number()\n\t\t\t\t\t.min(1, 'Base port must be >= 1')\n\t\t\t\t\t.max(65535, 'Base port must be <= 65535')\n\t\t\t\t\t.optional()\n\t\t\t\t\t.describe('Base port for web workspace port calculations (default: 3000)'),\n\t\t\t})\n\t\t\t.optional(),\n\t\tdatabase: z\n\t\t\t.object({\n\t\t\t\tdatabaseUrlEnvVarName: z\n\t\t\t\t\t.string()\n\t\t\t\t\t.min(1, 'Database URL variable name cannot be empty')\n\t\t\t\t\t.regex(/^[A-Z_][A-Z0-9_]*$/, 'Must be valid env var name (uppercase, underscores)')\n\t\t\t\t\t.optional()\n\t\t\t\t\t.describe('Name of environment variable for database connection URL'),\n\t\t\t})\n\t\t\t.optional(),\n\t})\n\t.optional()\n\n/**\n * Zod schema for Neon database provider settings\n */\nexport const NeonSettingsSchema = z.object({\n\tprojectId: z\n\t\t.string()\n\t\t.min(1)\n\t\t.regex(/^[a-zA-Z0-9-]+$/, 'Neon project ID must contain only letters, numbers, and hyphens')\n\t\t.describe('Neon project ID found in your project URL (e.g., \"fantastic-fox-3566354\")'),\n\tparentBranch: z\n\t\t.string()\n\t\t.min(1)\n\t\t.describe('Branch from which new database branches are created'),\n})\n\n/**\n * Zod schema for database provider settings\n */\nexport const DatabaseProvidersSettingsSchema = z\n\t.object({\n\t\tneon: NeonSettingsSchema.optional().describe(\n\t\t\t'Neon database configuration. Requires Neon CLI installed and authenticated for database branching.',\n\t\t),\n\t})\n\t.optional()\n\n/**\n * Zod schema for iloom settings\n */\nexport const IloomSettingsSchema = z.object({\n\tmainBranch: z\n\t\t.string()\n\t\t.min(1, \"Settings 'mainBranch' cannot be empty\")\n\t\t.optional()\n\t\t.describe('Name of the main/primary branch for the repository'),\n\tsourceEnvOnStart: z\n\t\t.boolean()\n\t\t.default(false)\n\t\t.describe(\n\t\t\t'Source .env file when launching terminal processes (Claude, dev server, terminal). ' +\n\t\t\t\t'NOTE TO AI AGENTS: Before making changes to settings files, YOU MUST OFFER to check  .env compatibility. ' +\n\t\t\t\t'WARNING: Unquoted values in .env files may break sourcing in bash/zsh shells. ' +\n\t\t\t\t'Before enabling, verify your .env file does not contain unquoted special characters ' +\n\t\t\t\t'(e.g., database URLs with ?, &, or other shell metacharacters). ' +\n\t\t\t\t'Shell compatibility issues may cause processes to fail or behave unexpectedly.',\n\t\t),\n\tworktreePrefix: z\n\t\t.string()\n\t\t.optional()\n\t\t.refine(\n\t\t\t(val) => {\n\t\t\t\tif (val === undefined) return true // undefined = use default calculation\n\t\t\t\tif (val === '') return true // empty string = no prefix mode\n\n\t\t\t\t// Allowlist: only alphanumeric, hyphens, underscores, and forward slashes\n\t\t\t\tconst allowedChars = /^[a-zA-Z0-9\\-_/]+$/\n\t\t\t\tif (!allowedChars.test(val)) return false\n\n\t\t\t\t// Reject if only special characters (no alphanumeric content)\n\t\t\t\tif (/^[-_/]+$/.test(val)) return false\n\n\t\t\t\t// Check each segment (split by /) contains at least one alphanumeric character\n\t\t\t\tconst segments = val.split('/')\n\t\t\t\tfor (const segment of segments) {\n\t\t\t\t\tif (segment && /^[-_]+$/.test(segment)) {\n\t\t\t\t\t\t// Segment exists but contains only hyphens/underscores\n\t\t\t\t\t\treturn false\n\t\t\t\t\t}\n\t\t\t\t}\n\n\t\t\t\treturn true\n\t\t\t},\n\t\t\t{\n\t\t\t\tmessage:\n\t\t\t\t\t\"worktreePrefix contains invalid characters. Only alphanumeric characters, hyphens (-), underscores (_), and forward slashes (/) are allowed. Use forward slashes for nested directories.\",\n\t\t\t},\n\t\t)\n\t\t.describe(\n\t\t\t'Prefix for worktree directories. Empty string disables prefix. Defaults to <repo-name>-looms if not set.',\n\t\t),\n\tprotectedBranches: z\n\t\t.array(z.string().min(1, 'Protected branch name cannot be empty'))\n\t\t.optional()\n\t\t.describe('List of branches that cannot be deleted (defaults to [mainBranch, \"main\", \"master\", \"develop\"])'),\n\tworkflows: WorkflowsSettingsSchema.describe('Per-workflow-type permission configurations'),\n\tagents: z\n\t\t.record(z.string(), AgentSettingsSchema)\n\t\t.optional()\n\t\t.nullable()\n\t\t.describe(\n\t\t\t'Per-agent configuration overrides. Available agents: ' +\n\t\t\t\t'iloom-issue-analyzer (analyzes issues), ' +\n\t\t\t\t'iloom-issue-planner (creates implementation plans), ' +\n\t\t\t\t'iloom-issue-analyze-and-plan (combined analysis and planning), ' +\n\t\t\t\t'iloom-issue-complexity-evaluator (evaluates complexity), ' +\n\t\t\t\t'iloom-issue-enhancer (enhances issue descriptions), ' +\n\t\t\t\t'iloom-issue-implementer (implements code changes), ' +\n\t\t\t\t'iloom-issue-reviewer (reviews code changes against requirements)',\n\t\t),\n\tcapabilities: CapabilitiesSettingsSchema.describe('Project capability configurations'),\n\tdatabaseProviders: DatabaseProvidersSettingsSchema.describe('Database provider configurations'),\n\tissueManagement: z\n\t\t.object({\n\t\t\tprovider: z.enum(['github', 'linear']).optional().default('github').describe('Issue tracker provider (github, linear)'),\n\t\t\tgithub: z\n\t\t\t\t.object({\n\t\t\t\t\tremote: z\n\t\t\t\t\t\t.string()\n\t\t\t\t\t\t.min(1, 'Remote name cannot be empty')\n\t\t\t\t\t\t.describe('Git remote name to use for GitHub operations'),\n\t\t\t\t})\n\t\t\t\t.optional(),\n\t\t\tlinear: z\n\t\t\t\t.object({\n\t\t\t\t\tteamId: z\n\t\t\t\t\t\t.string()\n\t\t\t\t\t\t.min(1, 'Team ID cannot be empty')\n\t\t\t\t\t\t.describe('Linear team identifier (e.g., \"ENG\", \"PLAT\")'),\n\t\t\t\t\tbranchFormat: z\n\t\t\t\t\t\t.string()\n\t\t\t\t\t\t.optional()\n\t\t\t\t\t\t.describe('Branch naming template for Linear issues'),\n\t\t\t\t\tapiToken: z\n\t\t\t\t\t\t.string()\n\t\t\t\t\t\t.optional()\n\t\t\t\t\t\t.describe('Linear API token (lin_api_...). SECURITY: Store in settings.local.json only, never commit to source control.'),\n\t\t\t\t})\n\t\t\t\t.optional(),\n\t\t})\n\t\t.optional()\n\t\t.describe('Issue management configuration'),\n\tmergeBehavior: z\n\t\t.object({\n\t\t\tmode: z.enum(['local', 'github-pr']).default('local'),\n\t\t\tremote: z.string().optional(),\n\t\t})\n\t\t.optional()\n\t\t.describe('Merge behavior configuration: local (merge locally) or github-pr (create PR)'),\n\tide: z\n\t\t.object({\n\t\t\ttype: z\n\t\t\t\t.enum(['vscode', 'cursor', 'webstorm', 'sublime', 'intellij', 'windsurf'])\n\t\t\t\t.default('vscode')\n\t\t\t\t.describe(\n\t\t\t\t\t'IDE to launch when starting a loom. Options: vscode (Visual Studio Code), cursor (Cursor AI editor), ' +\n\t\t\t\t\t\t'webstorm (JetBrains WebStorm), sublime (Sublime Text), intellij (JetBrains IntelliJ IDEA), ' +\n\t\t\t\t\t\t'windsurf (Windsurf editor).'\n\t\t\t\t),\n\t\t})\n\t\t.optional()\n\t\t.describe(\n\t\t\t'IDE configuration for workspace launches. Controls which editor opens when you start a loom. ' +\n\t\t\t\t'Supports VSCode, Cursor, WebStorm, Sublime Text, IntelliJ, and Windsurf. ' +\n\t\t\t\t'Note: Color synchronization (title bar colors) only works with VSCode-compatible editors (vscode, cursor, windsurf).'\n\t\t),\n})\n\n/**\n * Non-defaulting variant for pre-merge validation\n * This prevents Zod from polluting partial settings with default values before merge\n */\nexport const IloomSettingsSchemaNoDefaults = z.object({\n\tmainBranch: z\n\t\t.string()\n\t\t.min(1, \"Settings 'mainBranch' cannot be empty\")\n\t\t.optional()\n\t\t.describe('Name of the main/primary branch for the repository'),\n\tsourceEnvOnStart: z\n\t\t.boolean()\n\t\t.optional()\n\t\t.describe(\n\t\t\t'Source .env file when launching terminal processes (Claude, dev server, terminal). ' +\n\t\t\t\t'NOTE TO AI AGENTS: Before making changes to settings files, YOU MUST OFFER to check  .env compatibility. ' +\n\t\t\t\t'WARNING: Unquoted values in .env files may break sourcing in bash/zsh shells. ' +\n\t\t\t\t'Before enabling, verify your .env file does not contain unquoted special characters ' +\n\t\t\t\t'(e.g., database URLs with ?, &, or other shell metacharacters). ' +\n\t\t\t\t'Shell compatibility issues may cause processes to fail or behave unexpectedly.',\n\t\t),\n\tworktreePrefix: z\n\t\t.string()\n\t\t.optional()\n\t\t.refine(\n\t\t\t(val) => {\n\t\t\t\tif (val === undefined) return true // undefined = use default calculation\n\t\t\t\tif (val === '') return true // empty string = no prefix mode\n\n\t\t\t\t// Allowlist: only alphanumeric, hyphens, underscores, and forward slashes\n\t\t\t\tconst allowedChars = /^[a-zA-Z0-9\\-_/]+$/\n\t\t\t\tif (!allowedChars.test(val)) return false\n\n\t\t\t\t// Reject if only special characters (no alphanumeric content)\n\t\t\t\tif (/^[-_/]+$/.test(val)) return false\n\n\t\t\t\t// Check each segment (split by /) contains at least one alphanumeric character\n\t\t\t\tconst segments = val.split('/')\n\t\t\t\tfor (const segment of segments) {\n\t\t\t\t\tif (segment && /^[-_]+$/.test(segment)) {\n\t\t\t\t\t\t// Segment exists but contains only hyphens/underscores\n\t\t\t\t\t\treturn false\n\t\t\t\t\t}\n\t\t\t\t}\n\n\t\t\t\treturn true\n\t\t\t},\n\t\t\t{\n\t\t\t\tmessage:\n\t\t\t\t\t\"worktreePrefix contains invalid characters. Only alphanumeric characters, hyphens (-), underscores (_), and forward slashes (/) are allowed. Use forward slashes for nested directories.\",\n\t\t\t},\n\t\t)\n\t\t.describe(\n\t\t\t'Prefix for worktree directories. Empty string disables prefix. Defaults to <repo-name>-looms if not set.',\n\t\t),\n\tprotectedBranches: z\n\t\t.array(z.string().min(1, 'Protected branch name cannot be empty'))\n\t\t.optional()\n\t\t.describe('List of branches that cannot be deleted (defaults to [mainBranch, \"main\", \"master\", \"develop\"])'),\n\tworkflows: WorkflowsSettingsSchemaNoDefaults.describe('Per-workflow-type permission configurations'),\n\tagents: z\n\t\t.record(z.string(), AgentSettingsSchema)\n\t\t.optional()\n\t\t.nullable()\n\t\t.describe(\n\t\t\t'Per-agent configuration overrides. Available agents: ' +\n\t\t\t\t'iloom-issue-analyzer (analyzes issues), ' +\n\t\t\t\t'iloom-issue-planner (creates implementation plans), ' +\n\t\t\t\t'iloom-issue-analyze-and-plan (combined analysis and planning), ' +\n\t\t\t\t'iloom-issue-complexity-evaluator (evaluates complexity), ' +\n\t\t\t\t'iloom-issue-enhancer (enhances issue descriptions), ' +\n\t\t\t\t'iloom-issue-implementer (implements code changes), ' +\n\t\t\t\t'iloom-issue-reviewer (reviews code changes against requirements)',\n\t\t),\n\tcapabilities: CapabilitiesSettingsSchemaNoDefaults.describe('Project capability configurations'),\n\tdatabaseProviders: DatabaseProvidersSettingsSchema.describe('Database provider configurations'),\n\tissueManagement: z\n\t\t.object({\n\t\t\tprovider: z.enum(['github', 'linear']).optional().describe('Issue tracker provider (github, linear)'),\n\t\t\tgithub: z\n\t\t\t\t.object({\n\t\t\t\t\tremote: z\n\t\t\t\t\t\t.string()\n\t\t\t\t\t\t.min(1, 'Remote name cannot be empty')\n\t\t\t\t\t\t.describe('Git remote name to use for GitHub operations'),\n\t\t\t\t})\n\t\t\t\t.optional(),\n\t\t\tlinear: z\n\t\t\t\t.object({\n\t\t\t\t\tteamId: z\n\t\t\t\t\t\t.string()\n\t\t\t\t\t\t.min(1, 'Team ID cannot be empty')\n\t\t\t\t\t\t.describe('Linear team identifier (e.g., \"ENG\", \"PLAT\")'),\n\t\t\t\t\tbranchFormat: z\n\t\t\t\t\t\t.string()\n\t\t\t\t\t\t.optional()\n\t\t\t\t\t\t.describe('Branch naming template for Linear issues'),\n\t\t\t\t\tapiToken: z\n\t\t\t\t\t\t.string()\n\t\t\t\t\t\t.optional()\n\t\t\t\t\t\t.describe('Linear API token (lin_api_...). SECURITY: Store in settings.local.json only, never commit to source control.'),\n\t\t\t\t})\n\t\t\t\t.optional(),\n\t\t})\n\t\t.optional()\n\t\t.describe('Issue management configuration'),\n\tmergeBehavior: z\n\t\t.object({\n\t\t\tmode: z.enum(['local', 'github-pr']).optional(),\n\t\t\tremote: z.string().optional(),\n\t\t})\n\t\t.optional()\n\t\t.describe('Merge behavior configuration: local (merge locally) or github-pr (create PR)'),\n\tide: z\n\t\t.object({\n\t\t\ttype: z\n\t\t\t\t.enum(['vscode', 'cursor', 'webstorm', 'sublime', 'intellij', 'windsurf'])\n\t\t\t\t.optional()\n\t\t\t\t.describe(\n\t\t\t\t\t'IDE to launch when starting a loom. Options: vscode (Visual Studio Code), cursor (Cursor AI editor), ' +\n\t\t\t\t\t\t'webstorm (JetBrains WebStorm), sublime (Sublime Text), intellij (JetBrains IntelliJ IDEA), ' +\n\t\t\t\t\t\t'windsurf (Windsurf editor).'\n\t\t\t\t),\n\t\t})\n\t\t.optional()\n\t\t.describe(\n\t\t\t'IDE configuration for workspace launches. Controls which editor opens when you start a loom. ' +\n\t\t\t\t'Supports VSCode, Cursor, WebStorm, Sublime Text, IntelliJ, and Windsurf. ' +\n\t\t\t\t'Note: Color synchronization (title bar colors) only works with VSCode-compatible editors (vscode, cursor, windsurf).'\n\t\t),\n})\n\n/**\n * TypeScript type for Neon settings derived from Zod schema\n */\nexport type NeonSettings = z.infer<typeof NeonSettingsSchema>\n\n/**\n * TypeScript type for database providers settings derived from Zod schema\n */\nexport type DatabaseProvidersSettings = z.infer<typeof DatabaseProvidersSettingsSchema>\n\n/**\n * TypeScript type for agent settings derived from Zod schema\n */\nexport type AgentSettings = z.infer<typeof AgentSettingsSchema>\n\n/**\n * TypeScript type for workflow permission configuration derived from Zod schema\n */\nexport type WorkflowPermission = z.infer<typeof WorkflowPermissionSchema>\n\n/**\n * TypeScript type for workflows settings derived from Zod schema\n */\nexport type WorkflowsSettings = z.infer<typeof WorkflowsSettingsSchema>\n\n/**\n * TypeScript type for capabilities settings derived from Zod schema\n */\nexport type CapabilitiesSettings = z.infer<typeof CapabilitiesSettingsSchema>\n\n/**\n * TypeScript type for IDE settings derived from Zod schema\n */\nexport type IdeSettings = z.infer<typeof IloomSettingsSchema>['ide']\n\n/**\n * TypeScript type for iloom settings derived from Zod schema\n */\nexport type IloomSettings = z.infer<typeof IloomSettingsSchema>\n\n/**\n * Manages project-level settings from .iloom/settings.json\n */\nexport class SettingsManager {\n\t/**\n\t * Load settings from global, project, and local sources with proper precedence\n\t * Merge hierarchy (lowest to highest priority):\n\t * 1. Global settings (~/.config/iloom-ai/settings.json)\n\t * 2. Project settings (<PROJECT_ROOT>/.iloom/settings.json)\n\t * 3. Local settings (<PROJECT_ROOT>/.iloom/settings.local.json)\n\t * 4. CLI overrides (--set flags)\n\t * Returns empty object if all files don't exist (not an error)\n\t */\n\tasync loadSettings(\n\t\tprojectRoot?: string,\n\t\tcliOverrides?: Partial<IloomSettings>,\n\t): Promise<IloomSettings> {\n\t\tconst root = this.getProjectRoot(projectRoot)\n\n\t\t// Load global settings (lowest priority)\n\t\tconst globalSettings = await this.loadGlobalSettingsFile()\n\t\tconst globalSettingsPath = this.getGlobalSettingsPath()\n\t\tlogger.debug(`🌍 Global settings from ${globalSettingsPath}:`, JSON.stringify(globalSettings, null, 2))\n\n\t\t// Load base settings from settings.json\n\t\tconst baseSettings = await this.loadSettingsFile(root, 'settings.json')\n\t\tconst baseSettingsPath = path.join(root, '.iloom', 'settings.json')\n\t\tlogger.debug(`📄 Base settings from ${baseSettingsPath}:`, JSON.stringify(baseSettings, null, 2))\n\n\t\t// Load local overrides from settings.local.json\n\t\tconst localSettings = await this.loadSettingsFile(root, 'settings.local.json')\n\t\tconst localSettingsPath = path.join(root, '.iloom', 'settings.local.json')\n\t\tlogger.debug(`📄 Local settings from ${localSettingsPath}:`, JSON.stringify(localSettings, null, 2))\n\n\t\t// Deep merge with priority: cliOverrides > localSettings > baseSettings > globalSettings\n\t\tlet merged = this.mergeSettings(this.mergeSettings(globalSettings, baseSettings), localSettings)\n\t\tlogger.debug('🔄 After merging global + base + local settings:', JSON.stringify(merged, null, 2))\n\n\t\tif (cliOverrides && Object.keys(cliOverrides).length > 0) {\n\t\t\tlogger.debug('⚙️ CLI overrides to apply:', JSON.stringify(cliOverrides, null, 2))\n\t\t\tmerged = this.mergeSettings(merged, cliOverrides)\n\t\t\tlogger.debug('🔄 After applying CLI overrides:', JSON.stringify(merged, null, 2))\n\t\t}\n\n\t\t// Validate merged result\n\t\ttry {\n\t\t\tconst finalSettings = IloomSettingsSchema.parse(merged)\n\n\t\t\t// Debug: Log final merged configuration\n\t\t\tthis.logFinalConfiguration(finalSettings)\n\n\t\t\treturn finalSettings\n\t\t} catch (error) {\n\t\t\t// Show all Zod validation errors\n\t\t\tif (error instanceof z.ZodError) {\n\t\t\t\tconst errorMsg = this.formatAllZodErrors(error, '<merged settings>')\n\t\t\t\t// Enhance error message if CLI overrides were applied\n\t\t\t\tif (cliOverrides && Object.keys(cliOverrides).length > 0) {\n\t\t\t\t\tthrow new Error(`${errorMsg.message}\\n\\nNote: CLI overrides were applied. Check your --set arguments.`)\n\t\t\t\t}\n\t\t\t\tthrow errorMsg\n\t\t\t}\n\t\t\tthrow error\n\t\t}\n\t}\n\n\t/**\n\t * Log the final merged configuration for debugging\n\t */\n\tprivate logFinalConfiguration(settings: IloomSettings): void {\n\t\tlogger.debug('📋 Final merged configuration:', JSON.stringify(settings, null, 2))\n\t}\n\n\t/**\n\t * Load and parse a single settings file\n\t * Returns empty object if file doesn't exist (not an error)\n\t * Uses non-defaulting schema to prevent polluting partial settings with defaults before merge\n\t */\n\tprivate async loadSettingsFile(\n\t\tprojectRoot: string,\n\t\tfilename: string,\n\t): Promise<z.infer<typeof IloomSettingsSchemaNoDefaults>> {\n\t\tconst settingsPath = path.join(projectRoot, '.iloom', filename)\n\n\t\ttry {\n\t\t\tconst content = await readFile(settingsPath, 'utf-8')\n\t\t\tlet parsed: unknown\n\n\t\t\ttry {\n\t\t\t\tparsed = JSON.parse(content)\n\t\t\t} catch (error) {\n\t\t\t\tthrow new Error(\n\t\t\t\t\t`Failed to parse settings file at ${settingsPath}: ${error instanceof Error ? error.message : 'Invalid JSON'}`,\n\t\t\t\t)\n\t\t\t}\n\n\t\t\t// Basic type checking - ensure it's an object, but don't validate schema completeness\n\t\t\t// Individual files may be incomplete (e.g., Linear config split between files)\n\t\t\t// Final validation will happen on the merged result in loadSettings()\n\t\t\tif (typeof parsed !== 'object' || parsed === null || Array.isArray(parsed)) {\n\t\t\t\tthrow new Error(\n\t\t\t\t\t`Settings validation failed at ${filename}:\\n  - root: Expected object, received ${typeof parsed}`\n\t\t\t\t)\n\t\t\t}\n\t\t\treturn parsed as z.infer<typeof IloomSettingsSchemaNoDefaults>\n\t\t} catch (error) {\n\t\t\t// File not found is not an error - return empty settings\n\t\t\tif ((error as { code?: string }).code === 'ENOENT') {\n\t\t\t\tlogger.debug(`No settings file found at ${settingsPath}, using defaults`)\n\t\t\t\treturn {}\n\t\t\t}\n\n\t\t\t// Re-throw parsing errors\n\t\t\tthrow error\n\t\t}\n\t}\n\n\t/**\n\t * Deep merge two settings objects with priority to override\n\t * Uses deepmerge library with array replacement strategy\n\t */\n\tprivate mergeSettings(\n\t\tbase: Partial<IloomSettings> | z.infer<typeof IloomSettingsSchemaNoDefaults>,\n\t\toverride: Partial<IloomSettings> | z.infer<typeof IloomSettingsSchemaNoDefaults>,\n\t): IloomSettings {\n\t\t// Use deepmerge with array replacement (not concatenation)\n\t\t// Type assertion is safe because the merged result will be validated with IloomSettingsSchema\n\t\t// which applies all the defaults after merging\n\t\treturn deepmerge(base as Record<string, unknown>, override as Record<string, unknown>, {\n\t\t\t// Replace arrays instead of concatenating them\n\t\t\tarrayMerge: (_destinationArray, sourceArray) => sourceArray,\n\t\t}) as IloomSettings\n\t}\n\n\t/**\n\t * Format all Zod validation errors into a single error message\n\t */\n\tprivate formatAllZodErrors(error: z.ZodError, settingsPath: string): Error {\n\t\tconst errorMessages = error.issues.map(issue => {\n\t\t\tconst path = issue.path.length > 0 ? issue.path.join('.') : 'root'\n\t\t\treturn `  - ${path}: ${issue.message}`\n\t\t})\n\n\t\treturn new Error(\n\t\t\t`Settings validation failed at ${settingsPath}:\\n${errorMessages.join('\\n')}`,\n\t\t)\n\t}\n\n\t/**\n\t * Validate settings structure and model names using Zod schema\n\t * This method is kept for testing purposes but uses Zod internally\n\t * @internal - Only used in tests via bracket notation\n\t */\n\t// @ts-expect-error - Used in tests via bracket notation, TypeScript can't detect this usage\n\tprivate validateSettings(settings: IloomSettings): void {\n\t\ttry {\n\t\t\tIloomSettingsSchema.parse(settings)\n\t\t} catch (error) {\n\t\t\tif (error instanceof z.ZodError) {\n\t\t\t\tthrow this.formatAllZodErrors(error, '<validation>')\n\t\t\t}\n\t\t\tthrow error\n\t\t}\n\t}\n\n\t/**\n\t * Get project root (defaults to process.cwd())\n\t */\n\tprivate getProjectRoot(projectRoot?: string): string {\n\t\treturn projectRoot ?? process.cwd()\n\t}\n\n\t/**\n\t * Get global config directory path (~/.config/iloom-ai)\n\t */\n\tprivate getGlobalConfigDir(): string {\n\t\treturn path.join(os.homedir(), '.config', 'iloom-ai')\n\t}\n\n\t/**\n\t * Get global settings file path (~/.config/iloom-ai/settings.json)\n\t */\n\tprivate getGlobalSettingsPath(): string {\n\t\treturn path.join(this.getGlobalConfigDir(), 'settings.json')\n\t}\n\n\t/**\n\t * Load and parse global settings file\n\t * Returns empty object if file doesn't exist (not an error)\n\t * Warns but returns empty object on validation/parse errors (graceful degradation)\n\t */\n\tprivate async loadGlobalSettingsFile(): Promise<z.infer<typeof IloomSettingsSchemaNoDefaults>> {\n\t\tconst settingsPath = this.getGlobalSettingsPath()\n\n\t\ttry {\n\t\t\tconst content = await readFile(settingsPath, 'utf-8')\n\t\t\tlet parsed: unknown\n\n\t\t\ttry {\n\t\t\t\tparsed = JSON.parse(content)\n\t\t\t} catch (error) {\n\t\t\t\tlogger.warn(\n\t\t\t\t\t`Failed to parse global settings file at ${settingsPath}: ${error instanceof Error ? error.message : 'Invalid JSON'}. Ignoring global settings.`,\n\t\t\t\t)\n\t\t\t\treturn {}\n\t\t\t}\n\n\t\t\t// Validate with non-defaulting schema\n\t\t\ttry {\n\t\t\t\tconst validated = IloomSettingsSchemaNoDefaults.strict().parse(parsed)\n\t\t\t\treturn validated\n\t\t\t} catch (error) {\n\t\t\t\tif (error instanceof z.ZodError) {\n\t\t\t\t\tconst errorMsg = this.formatAllZodErrors(error, 'global settings')\n\t\t\t\t\tlogger.warn(`${errorMsg.message}. Ignoring global settings.`)\n\t\t\t\t} else {\n\t\t\t\t\tlogger.warn(`Validation error in global settings: ${error instanceof Error ? error.message : 'Unknown error'}. Ignoring global settings.`)\n\t\t\t\t}\n\t\t\t\treturn {}\n\t\t\t}\n\t\t} catch (error) {\n\t\t\t// File not found is not an error - return empty settings\n\t\t\tif ((error as { code?: string }).code === 'ENOENT') {\n\t\t\t\tlogger.debug(`No global settings file found at ${settingsPath}`)\n\t\t\t\treturn {}\n\t\t\t}\n\n\t\t\t// Other file system errors - warn and continue\n\t\t\tlogger.warn(`Error reading global settings file at ${settingsPath}: ${error instanceof Error ? error.message : 'Unknown error'}. Ignoring global settings.`)\n\t\t\treturn {}\n\t\t}\n\t}\n\n\t/**\n\t * Get effective protected branches list with mainBranch always included\n\t *\n\t * This method provides a single source of truth for protected branches logic:\n\t * 1. Use configured protectedBranches if provided\n\t * 2. Otherwise use defaults: [mainBranch, 'main', 'master', 'develop']\n\t * 3. ALWAYS ensure mainBranch is included even if user configured custom list\n\t *\n\t * @param projectRoot - Optional project root directory (defaults to process.cwd())\n\t * @returns Array of protected branch names with mainBranch guaranteed to be included\n\t */\n\tasync getProtectedBranches(projectRoot?: string): Promise<string[]> {\n\t\tconst settings = await this.loadSettings(projectRoot)\n\t\tconst mainBranch = settings.mainBranch ?? 'main'\n\n\t\t// Build protected branches list:\n\t\t// 1. Use configured protectedBranches if provided\n\t\t// 2. Otherwise use defaults: [mainBranch, 'main', 'master', 'develop']\n\t\t// 3. 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