npm - @iloom/cli - Versions diffs - 0.11.1 → 0.13.0-beta.0 - Mend

@iloom/cli 0.11.1 → 0.13.0-beta.0

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- {"version":3,"sources":["../src/lib/SettingsManager.ts"],"sourcesContent":["import { readFile } from 'fs/promises'\nimport path from 'path'\nimport os from 'os'\nimport { z } from 'zod'\nimport deepmerge from 'deepmerge'\nimport { logger } from '../utils/logger.js'\n\n/**\n * Zod schema for base agent settings (without nested agents)\n */\nexport const BaseAgentSettingsSchema = z.object({\n\tmodel: z\n\t\t.enum(['sonnet', 'opus', 'haiku'])\n\t\t.optional()\n\t\t.describe('Claude model shorthand: sonnet, opus, or haiku'),\n\tswarmModel: z\n\t\t.enum(['sonnet', 'opus', 'haiku'])\n\t\t.optional()\n\t\t.describe('Model to use for this agent in swarm mode. Overrides the base model when running inside swarm workers.'),\n\tenabled: z\n\t\t.boolean()\n\t\t.optional()\n\t\t.describe('Whether this agent is enabled. Defaults to true.'),\n\tproviders: z\n\t\t.record(\n\t\t\tz.enum(['claude', 'gemini', 'codex']),\n\t\t\tz.string()\n\t\t)\n\t\t.optional()\n\t\t.describe('Map of review providers to model names. Keys: claude, gemini, codex. Values: model name strings (e.g., \"sonnet\", \"gemini-3-pro-preview\", \"gpt-5.2-codex\")'),\n\treview: z\n\t\t.boolean()\n\t\t.optional()\n\t\t.describe('Whether artifacts from this agent should be reviewed before posting (defaults to false)'),\n\tswarmReview: z\n\t\t.boolean()\n\t\t.optional()\n\t\t.describe('Whether artifacts from this agent should be reviewed in swarm mode. Defaults to false if not set (review is off in swarm mode for speed and cost unless explicitly enabled).'),\n})\n\n/**\n * Zod schema for agent settings, extends base with sub-agent timeout.\n */\nexport const AgentSettingsSchema = BaseAgentSettingsSchema.extend({\n\tsubAgentTimeout: z\n\t\t.number()\n\t\t.min(1, 'Sub-agent timeout must be at least 1 minute')\n\t\t.max(120, 'Sub-agent timeout cannot exceed 120 minutes')\n\t\t.default(10)\n\t\t.describe('Timeout in minutes for sub-agent claude -p invocations in swarm mode. Applies to each phase agent (evaluator, analyzer, planner, implementer) when invoked via the Bash tool. Default: 10 minutes. Only meaningful under the iloom-swarm-worker agent entry.'),\n})\n\n/**\n * Zod schema for spin agent settings with default model\n * Used for the spin orchestrator configuration\n */\nexport const SpinAgentSettingsSchema = z.object({\n\tmodel: z\n\t\t.enum(['sonnet', 'opus', 'haiku'])\n\t\t.default('opus')\n\t\t.describe('Claude model shorthand for spin orchestrator'),\n\tswarmModel: z\n\t\t.enum(['sonnet', 'opus', 'haiku'])\n\t\t.optional()\n\t\t.describe('Model for the spin orchestrator when running in swarm mode. Overrides spin.model for swarm workflows.'),\n\tpostSwarmReview: z\n\t\t.boolean()\n\t\t.default(true)\n\t\t.describe('Run a full code review after swarm completion, auto-fixing issues with confidence 80+. Defaults to true.'),\n})\n\n/**\n * Zod schema for plan command settings with default model\n * Used for the plan command configuration\n */\nexport const PlanCommandSettingsSchema = z.object({\n\tmodel: z\n\t\t.enum(['sonnet', 'opus', 'haiku'])\n\t\t.default('opus')\n\t\t.describe('Claude model shorthand for plan command'),\n\tplanner: z\n\t\t.enum(['claude', 'gemini', 'codex'])\n\t\t.default('claude')\n\t\t.describe('AI provider for creating the plan'),\n\treviewer: z\n\t\t.enum(['claude', 'gemini', 'codex', 'none'])\n\t\t.default('none')\n\t\t.describe('AI provider for reviewing the plan (none to skip review)'),\n})\n\n/**\n * Zod schema for summary settings with default model\n * Used for session summary generation configuration\n */\nexport const SummarySettingsSchema = z.object({\n\tmodel: z\n\t\t.enum(['sonnet', 'opus', 'haiku'])\n\t\t.default('sonnet')\n\t\t.describe('Claude model shorthand for session summary generation'),\n})\n\n/**\n * Zod schema for workflow permission configuration\n */\nexport const WorkflowPermissionSchema = z.object({\n\tpermissionMode: z\n\t\t.enum(['plan', 'acceptEdits', 'bypassPermissions', 'default'])\n\t\t.optional()\n\t\t.describe('Permission mode for Claude CLI in this workflow type'),\n\tnoVerify: z\n\t\t.boolean()\n\t\t.optional()\n\t\t.describe('Skip pre-commit hooks (--no-verify) when committing during commit and finish workflows'),\n\tstartIde: z\n\t\t.boolean()\n\t\t.default(true)\n\t\t.describe('Launch IDE (code) when starting this workflow type'),\n\tstartDevServer: z\n\t\t.boolean()\n\t\t.default(true)\n\t\t.describe('Launch development server when starting this workflow type'),\n\tstartAiAgent: z\n\t\t.boolean()\n\t\t.default(true)\n\t\t.describe('Launch Claude Code agent when starting this workflow type'),\n\tstartTerminal: z\n\t\t.boolean()\n\t\t.default(false)\n\t\t.describe('Launch terminal window without dev server when starting this workflow type'),\n\tgenerateSummary: z\n\t\t.boolean()\n\t\t.default(true)\n\t\t.describe('Generate and post Claude session summary when finishing this workflow type'),\n})\n\n/**\n * Non-defaulting variant for pre-merge validation\n * This prevents Zod from polluting partial settings with default values before merge\n */\nexport const WorkflowPermissionSchemaNoDefaults = z.object({\n\tpermissionMode: z\n\t\t.enum(['plan', 'acceptEdits', 'bypassPermissions', 'default'])\n\t\t.optional()\n\t\t.describe('Permission mode for Claude CLI in this workflow type'),\n\tnoVerify: z\n\t\t.boolean()\n\t\t.optional()\n\t\t.describe('Skip pre-commit hooks (--no-verify) when committing during commit and finish workflows'),\n\tstartIde: z\n\t\t.boolean()\n\t\t.optional()\n\t\t.describe('Launch IDE (code) when starting this workflow type'),\n\tstartDevServer: z\n\t\t.boolean()\n\t\t.optional()\n\t\t.describe('Launch development server when starting this workflow type'),\n\tstartAiAgent: z\n\t\t.boolean()\n\t\t.optional()\n\t\t.describe('Launch Claude Code agent when starting this workflow type'),\n\tstartTerminal: z\n\t\t.boolean()\n\t\t.optional()\n\t\t.describe('Launch terminal window without dev server when starting this workflow type'),\n\tgenerateSummary: z\n\t\t.boolean()\n\t\t.optional()\n\t\t.describe('Generate and post Claude session summary when finishing this workflow type'),\n})\n\n/**\n * Zod schema for workflows settings\n */\nexport const WorkflowsSettingsSchema = z\n\t.object({\n\t\tissue: WorkflowPermissionSchema.optional(),\n\t\tpr: WorkflowPermissionSchema.optional(),\n\t\tregular: WorkflowPermissionSchema.optional(),\n\t})\n\t.optional()\n\n/**\n * Non-defaulting variant for pre-merge validation\n */\nexport const WorkflowsSettingsSchemaNoDefaults = z\n\t.object({\n\t\tissue: WorkflowPermissionSchemaNoDefaults.optional(),\n\t\tpr: WorkflowPermissionSchemaNoDefaults.optional(),\n\t\tregular: WorkflowPermissionSchemaNoDefaults.optional(),\n\t})\n\t.optional()\n\n/**\n * Zod schema for capabilities settings\n */\nexport const CapabilitiesSettingsSchema = z\n\t.object({\n\t\tweb: z\n\t\t\t.object({\n\t\t\t\tbasePort: z\n\t\t\t\t\t.number()\n\t\t\t\t\t.min(1, 'Base port must be >= 1')\n\t\t\t\t\t.max(65535, 'Base port must be <= 65535')\n\t\t\t\t\t.optional()\n\t\t\t\t\t.describe('Base port for web workspace port calculations (default: 3000)'),\n\t\t\t})\n\t\t\t.optional()\n\t\t\t.describe('Web dev server settings. To declare a project as a web project, add \"web\" to the capabilities array in .iloom/package.iloom.json or .iloom/package.iloom.local.json.'),\n\t\tdatabase: z\n\t\t\t.object({\n\t\t\t\tdatabaseUrlEnvVarName: z\n\t\t\t\t\t.string()\n\t\t\t\t\t.min(1, 'Database URL variable name cannot be empty')\n\t\t\t\t\t.regex(/^[A-Z_][A-Z0-9_]*$/, 'Must be valid env var name (uppercase, underscores)')\n\t\t\t\t\t.optional()\n\t\t\t\t\t.default('DATABASE_URL')\n\t\t\t\t\t.describe('Name of environment variable for database connection URL'),\n\t\t\t})\n\t\t\t.optional(),\n\t})\n\t.optional()\n\n/**\n * Non-defaulting variant for pre-merge validation\n */\nexport const CapabilitiesSettingsSchemaNoDefaults = z\n\t.object({\n\t\tweb: z\n\t\t\t.object({\n\t\t\t\tbasePort: z\n\t\t\t\t\t.number()\n\t\t\t\t\t.min(1, 'Base port must be >= 1')\n\t\t\t\t\t.max(65535, 'Base port must be <= 65535')\n\t\t\t\t\t.optional()\n\t\t\t\t\t.describe('Base port for web workspace port calculations (default: 3000)'),\n\t\t\t})\n\t\t\t.optional()\n\t\t\t.describe('Web dev server settings. To declare a project as a web project, add \"web\" to the capabilities array in .iloom/package.iloom.json or .iloom/package.iloom.local.json.'),\n\t\tdatabase: z\n\t\t\t.object({\n\t\t\t\tdatabaseUrlEnvVarName: z\n\t\t\t\t\t.string()\n\t\t\t\t\t.min(1, 'Database URL variable name cannot be empty')\n\t\t\t\t\t.regex(/^[A-Z_][A-Z0-9_]*$/, 'Must be valid env var name (uppercase, underscores)')\n\t\t\t\t\t.optional()\n\t\t\t\t\t.describe('Name of environment variable for database connection URL'),\n\t\t\t})\n\t\t\t.optional(),\n\t})\n\t.optional()\n\n/**\n * Zod schema for Neon database provider settings\n */\nexport const NeonSettingsSchema = z.object({\n\tprojectId: z\n\t\t.string()\n\t\t.min(1)\n\t\t.regex(/^[a-zA-Z0-9-]+$/, 'Neon project ID must contain only letters, numbers, and hyphens')\n\t\t.describe('Neon project ID found in your project URL (e.g., \"fantastic-fox-3566354\")'),\n\tparentBranch: z\n\t\t.string()\n\t\t.min(1)\n\t\t.describe('Branch from which new database branches are created'),\n})\n\n/**\n * Zod schema for database provider settings\n */\nexport const DatabaseProvidersSettingsSchema = z\n\t.object({\n\t\tneon: NeonSettingsSchema.optional().describe(\n\t\t\t'Neon database configuration. Requires Neon CLI installed and authenticated for database branching.',\n\t\t),\n\t})\n\t.optional()\n\n/**\n * Zod schema for iloom settings\n */\nexport const IloomSettingsSchema = z.object({\n\tmainBranch: z\n\t\t.string()\n\t\t.min(1, \"Settings 'mainBranch' cannot be empty\")\n\t\t.optional()\n\t\t.describe('Name of the main/primary branch for the repository'),\n\tsourceEnvOnStart: z\n\t\t.boolean()\n\t\t.default(false)\n\t\t.describe(\n\t\t\t'Source all dotenv-flow files (.env, .env.local, .env.development, .env.development.local) when launching terminal processes (Claude, dev server, terminal). ' +\n\t\t\t\t'Files are sourced in precedence order so later files override earlier ones. ' +\n\t\t\t\t'NOTE TO AI AGENTS: Before making changes to settings files, YOU MUST OFFER to check .env file compatibility. ' +\n\t\t\t\t'WARNING: Unquoted values in .env files may break sourcing in bash/zsh shells. ' +\n\t\t\t\t'Before enabling, verify ALL your .env.* files do not contain unquoted special characters ' +\n\t\t\t\t'(e.g., database URLs with ?, &, or other shell metacharacters). ' +\n\t\t\t\t'Shell compatibility issues may cause processes to fail or behave unexpectedly.',\n\t\t),\n\tworktreePrefix: z\n\t\t.string()\n\t\t.optional()\n\t\t.refine(\n\t\t\t(val) => {\n\t\t\t\tif (val === undefined) return true // undefined = use default calculation\n\t\t\t\tif (val === '') return true // empty string = no prefix mode\n\n\t\t\t\t// Allowlist: only alphanumeric, hyphens, underscores, and forward slashes\n\t\t\t\tconst allowedChars = /^[a-zA-Z0-9\\-_/]+$/\n\t\t\t\tif (!allowedChars.test(val)) return false\n\n\t\t\t\t// Reject if only special characters (no alphanumeric content)\n\t\t\t\tif (/^[-_/]+$/.test(val)) return false\n\n\t\t\t\t// Check each segment (split by /) contains at least one alphanumeric character\n\t\t\t\tconst segments = val.split('/')\n\t\t\t\tfor (const segment of segments) {\n\t\t\t\t\tif (segment && /^[-_]+$/.test(segment)) {\n\t\t\t\t\t\t// Segment exists but contains only hyphens/underscores\n\t\t\t\t\t\treturn false\n\t\t\t\t\t}\n\t\t\t\t}\n\n\t\t\t\treturn true\n\t\t\t},\n\t\t\t{\n\t\t\t\tmessage:\n\t\t\t\t\t\"worktreePrefix contains invalid characters. Only alphanumeric characters, hyphens (-), underscores (_), and forward slashes (/) are allowed. Use forward slashes for nested directories.\",\n\t\t\t},\n\t\t)\n\t\t.describe(\n\t\t\t'Prefix for worktree directories. Empty string disables prefix. Defaults to <repo-name>-looms if not set.',\n\t\t),\n\tprotectedBranches: z\n\t\t.array(z.string().min(1, 'Protected branch name cannot be empty'))\n\t\t.optional()\n\t\t.describe('List of branches that cannot be deleted (defaults to [mainBranch, \"main\", \"master\", \"develop\"])'),\n\tcopyGitIgnoredPatterns: z\n\t\t.array(z.string().min(1, 'Pattern cannot be empty'))\n\t\t.optional()\n\t\t.describe('Glob patterns for gitignored files to copy to looms (e.g., [\"*.db\", \"data/*.sqlite\"]). Great for local dbs and large test data files that are too big to commit to git. Note: .env (dotenv-flow) files, iloom\\'s and claude\\'s local settings are automatically copied and do not need to be specified here.'),\n\tworkflows: WorkflowsSettingsSchema.describe('Per-workflow-type permission configurations'),\n\tagents: z\n\t\t.record(z.string(), AgentSettingsSchema)\n\t\t.optional()\n\t\t.nullable()\n\t\t.describe(\n\t\t\t'Per-agent configuration overrides. Available agents: ' +\n\t\t\t\t'iloom-issue-analyzer (analyzes issues), ' +\n\t\t\t\t'iloom-issue-planner (creates implementation plans), ' +\n\t\t\t\t'iloom-issue-analyze-and-plan (combined analysis and planning), ' +\n\t\t\t\t'iloom-issue-complexity-evaluator (evaluates complexity), ' +\n\t\t\t\t'iloom-issue-enhancer (enhances issue descriptions), ' +\n\t\t\t\t'iloom-issue-implementer (implements code changes), ' +\n\t\t\t\t'iloom-code-reviewer (reviews code changes against requirements), ' +\n\t\t\t\t'iloom-artifact-reviewer (reviews artifacts before posting), ' +\n\t\t\t\t'iloom-swarm-worker (swarm worker agent, dynamically generated). ' +\n\t\t\t\t'Use swarmModel on any agent to override its model in swarm mode.',\n\t\t),\n\tspin: SpinAgentSettingsSchema.optional().describe(\n\t\t'Spin orchestrator configuration. Model defaults to opus when not configured.',\n\t),\n\tplan: PlanCommandSettingsSchema.optional().describe(\n\t\t'Plan command configuration. Model defaults to opus, planner to claude, reviewer to none when not configured.',\n\t),\n\tsummary: SummarySettingsSchema.optional().describe(\n\t\t'Session summary generation configuration. Model defaults to sonnet when not configured.',\n\t),\n\tcapabilities: CapabilitiesSettingsSchema.describe('Project capability configurations'),\n\tdatabaseProviders: DatabaseProvidersSettingsSchema.describe('Database provider configurations'),\n\tissueManagement: z\n\t\t.object({\n\t\t\t// SYNC: If this default changes, update displayDefaultsBox() in src/utils/first-run-setup.ts\n\t\t\tprovider: z.enum(['github', 'linear', 'jira']).optional().default('github').describe('Issue tracker provider (github, linear, jira)'),\n\t\t\tgithub: z\n\t\t\t\t.object({\n\t\t\t\t\tremote: z\n\t\t\t\t\t\t.string()\n\t\t\t\t\t\t.min(1, 'Remote name cannot be empty')\n\t\t\t\t\t\t.describe('Git remote name to use for GitHub operations'),\n\t\t\t\t})\n\t\t\t\t.optional(),\n\t\t\tlinear: z\n\t\t\t\t.object({\n\t\t\t\t\tteamId: z\n\t\t\t\t\t\t.string()\n\t\t\t\t\t\t.min(1, 'Team ID cannot be empty')\n\t\t\t\t\t\t.describe('Linear team identifier (e.g., \"ENG\", \"PLAT\")'),\n\t\t\t\t\tbranchFormat: z\n\t\t\t\t\t\t.string()\n\t\t\t\t\t\t.optional()\n\t\t\t\t\t\t.describe('Branch naming template for Linear issues'),\n\t\t\t\t\tapiToken: z\n\t\t\t\t\t\t.string()\n\t\t\t\t\t\t.optional()\n\t\t\t\t\t\t.describe('Linear API token (lin_api_...). SECURITY: Store in settings.local.json only, never commit to source control.'),\n\t\t\t\t})\n\t\t\t\t.optional(),\n\t\t\tjira: z\n\t\t\t\t.object({\n\t\t\t\t\thost: z\n\t\t\t\t\t\t.string()\n\t\t\t\t\t\t.min(1, 'Jira host cannot be empty')\n\t\t\t\t\t\t.describe('Jira instance URL (e.g., \"https://yourcompany.atlassian.net\")'),\n\t\t\t\t\tusername: z\n\t\t\t\t\t\t.string()\n\t\t\t\t\t\t.min(1, 'Jira username/email cannot be empty')\n\t\t\t\t\t\t.describe('Jira username or email address'),\n\t\t\t\t\tapiToken: z\n\t\t\t\t\t\t.string()\n\t\t\t\t\t\t.optional()\n\t\t\t\t\t\t.describe('Jira API token. SECURITY: Store in settings.local.json only, never commit to source control. Generate at: https://id.atlassian.com/manage-profile/security/api-tokens'),\n\t\t\t\t\tprojectKey: z\n\t\t\t\t\t\t.string()\n\t\t\t\t\t\t.min(1, 'Project key cannot be empty')\n\t\t\t\t\t\t.describe('Jira project key (e.g., \"PROJ\", \"ENG\")'),\n\t\t\t\t\tboardId: z\n\t\t\t\t\t\t.string()\n\t\t\t\t\t\t.optional()\n\t\t\t\t\t\t.describe('Jira board ID for sprint/workflow operations (optional)'),\n\t\t\t\t\ttransitionMappings: z\n\t\t\t\t\t\t.record(z.string(), z.string())\n\t\t\t\t\t\t.optional()\n\t\t\t\t\t\t.describe('Map iloom states to Jira transition names (e.g., {\"In Review\": \"Start Review\"})'),\n\t\t\t\t\tdefaultIssueType: z\n\t\t\t\t\t\t.string()\n\t\t\t\t\t\t.min(1)\n\t\t\t\t\t\t.optional()\n\t\t\t\t\t\t.default('Task')\n\t\t\t\t\t\t.describe('Default Jira issue type name for creating issues (e.g., \"Task\", \"Story\", \"Bug\")'),\n\t\t\t\t\tdefaultSubtaskType: z\n\t\t\t\t\t\t.string()\n\t\t\t\t\t\t.min(1)\n\t\t\t\t\t\t.optional()\n\t\t\t\t\t\t.default('Subtask')\n\t\t\t\t\t\t.describe('Default Jira issue type name for creating subtasks/child issues (e.g., \"Subtask\", \"Sub-task\")'),\n\t\t\t\t\tdoneStatuses: z\n\t\t\t\t\t\t.array(z.string())\n\t\t\t\t\t\t.optional()\n\t\t\t\t\t\t.default(['Done'])\n\t\t\t\t\t\t.describe('Status names to exclude from issue lists (e.g., [\"Done\", \"Closed\", \"Verify\"])'),\n\t\t\t\t})\n\t\t\t\t.optional(),\n\t\t})\n\t\t.optional()\n\t\t.describe('Issue management configuration'),\n\tmergeBehavior: z\n\t\t.object({\n\t\t\t// SYNC: If this default changes, update displayDefaultsBox() in src/utils/first-run-setup.ts\n\t\t\tmode: z.enum(['local', 'github-pr', 'github-draft-pr']).default('local'),\n\t\t\tremote: z.string().optional(),\n\t\t\tautoCommitPush: z\n\t\t\t\t.boolean()\n\t\t\t\t.optional()\n\t\t\t\t.describe(\n\t\t\t\t\t'Auto-commit and push after code review in draft PR mode. Defaults to true when mode is github-draft-pr.'\n\t\t\t\t),\n\t\t\topenBrowserOnFinish: z\n\t\t\t\t.boolean()\n\t\t\t\t.default(true)\n\t\t\t\t.describe(\n\t\t\t\t\t'Open the PR in the default browser after finishing in github-pr or github-draft-pr mode. Use --no-browser flag to override.'\n\t\t\t\t),\n\t\t})\n\t\t.optional()\n\t\t.describe('Merge behavior configuration: local (merge locally), github-pr (create PR), or github-draft-pr (create draft PR at start, mark ready on finish)'),\n\tide: z\n\t\t.object({\n\t\t\t// SYNC: If this default changes, update displayDefaultsBox() in src/utils/first-run-setup.ts\n\t\t\ttype: z\n\t\t\t\t.enum(['vscode', 'cursor', 'webstorm', 'sublime', 'intellij', 'windsurf', 'antigravity'])\n\t\t\t\t.default('vscode')\n\t\t\t\t.describe(\n\t\t\t\t\t'IDE to launch when starting a loom. Options: vscode (Visual Studio Code), cursor (Cursor AI editor), ' +\n\t\t\t\t\t\t'webstorm (JetBrains WebStorm), sublime (Sublime Text), intellij (JetBrains IntelliJ IDEA), ' +\n\t\t\t\t\t\t'windsurf (Windsurf editor), antigravity (Antigravity IDE).'\n\t\t\t\t),\n\t\t})\n\t\t.optional()\n\t\t.describe(\n\t\t\t'IDE configuration for workspace launches. Controls which editor opens when you start a loom. ' +\n\t\t\t\t'Supports VSCode, Cursor, WebStorm, Sublime Text, IntelliJ, Windsurf, and Antigravity. ' +\n\t\t\t\t'Note: Color synchronization (title bar colors) only works with VSCode-compatible editors (vscode, cursor, windsurf, antigravity).'\n\t\t),\n\tcolors: z\n\t\t.object({\n\t\t\tterminal: z\n\t\t\t\t.boolean()\n\t\t\t\t.default(true)\n\t\t\t\t.describe('Apply terminal background colors based on branch name (macOS only)'),\n\t\t\tvscode: z\n\t\t\t\t.boolean()\n\t\t\t\t.default(false)\n\t\t\t\t.describe(\n\t\t\t\t\t'Apply VSCode/Cursor title bar colors based on branch name. ' +\n\t\t\t\t\t\t'Note: This modifies .vscode/settings.json which may be in source control. ' +\n\t\t\t\t\t\t'Default is false for safety; enable via init or explicitly if .vscode is gitignored.'\n\t\t\t\t),\n\t\t})\n\t\t.optional()\n\t\t.describe('Color synchronization settings for workspace identification'),\n\tattribution: z\n\t\t.enum(['off', 'upstreamOnly', 'on'])\n\t\t.default('upstreamOnly')\n\t\t.describe(\n\t\t\t'Controls when iloom attribution appears in session summaries. ' +\n\t\t\t\t'\"off\" - never show attribution. ' +\n\t\t\t\t'\"upstreamOnly\" - only show for contributions to external repositories (e.g., open source). ' +\n\t\t\t\t'\"on\" - always show attribution.'\n\t\t),\n\tgit: z\n\t\t.object({\n\t\t\tcommitTimeout: z\n\t\t\t\t.number()\n\t\t\t\t.min(1000, 'Commit timeout must be at least 1000ms')\n\t\t\t\t.max(600000, 'Commit timeout cannot exceed 600000ms (10 minutes)')\n\t\t\t\t.default(60000)\n\t\t\t\t.describe('Timeout in milliseconds for git commit operations. Increase for long-running pre-commit hooks.'),\n\t\t})\n\t\t.default({ }) // ensures the object always exists and uses default for the inner properties\n\t\t.describe('Git operation settings'),\n})\n\n/**\n * Non-defaulting variant for pre-merge validation\n * This prevents Zod from polluting partial settings with default values before merge\n */\nexport const IloomSettingsSchemaNoDefaults = z.object({\n\tmainBranch: z\n\t\t.string()\n\t\t.min(1, \"Settings 'mainBranch' cannot be empty\")\n\t\t.optional()\n\t\t.describe('Name of the main/primary branch for the repository'),\n\tsourceEnvOnStart: z\n\t\t.boolean()\n\t\t.optional()\n\t\t.describe(\n\t\t\t'Source all dotenv-flow files (.env, .env.local, .env.development, .env.development.local) when launching terminal processes (Claude, dev server, terminal). ' +\n\t\t\t\t'Files are sourced in precedence order so later files override earlier ones. ' +\n\t\t\t\t'NOTE TO AI AGENTS: Before making changes to settings files, YOU MUST OFFER to check .env compatibility. ' +\n\t\t\t\t'WARNING: Unquoted values in .env files may break sourcing in bash/zsh shells. ' +\n\t\t\t\t'Before enabling, verify ALL your .env.* files do not contain unquoted special characters ' +\n\t\t\t\t'(e.g., database URLs with ?, &, or other shell metacharacters). ' +\n\t\t\t\t'Shell compatibility issues may cause processes to fail or behave unexpectedly.',\n\t\t),\n\tworktreePrefix: z\n\t\t.string()\n\t\t.optional()\n\t\t.refine(\n\t\t\t(val) => {\n\t\t\t\tif (val === undefined) return true // undefined = use default calculation\n\t\t\t\tif (val === '') return true // empty string = no prefix mode\n\n\t\t\t\t// Allowlist: only alphanumeric, hyphens, underscores, and forward slashes\n\t\t\t\tconst allowedChars = /^[a-zA-Z0-9\\-_/]+$/\n\t\t\t\tif (!allowedChars.test(val)) return false\n\n\t\t\t\t// Reject if only special characters (no alphanumeric content)\n\t\t\t\tif (/^[-_/]+$/.test(val)) return false\n\n\t\t\t\t// Check each segment (split by /) contains at least one alphanumeric character\n\t\t\t\tconst segments = val.split('/')\n\t\t\t\tfor (const segment of segments) {\n\t\t\t\t\tif (segment && /^[-_]+$/.test(segment)) {\n\t\t\t\t\t\t// Segment exists but contains only hyphens/underscores\n\t\t\t\t\t\treturn false\n\t\t\t\t\t}\n\t\t\t\t}\n\n\t\t\t\treturn true\n\t\t\t},\n\t\t\t{\n\t\t\t\tmessage:\n\t\t\t\t\t\"worktreePrefix contains invalid characters. Only alphanumeric characters, hyphens (-), underscores (_), and forward slashes (/) are allowed. Use forward slashes for nested directories.\",\n\t\t\t},\n\t\t)\n\t\t.describe(\n\t\t\t'Prefix for worktree directories. Empty string disables prefix. Defaults to <repo-name>-looms if not set.',\n\t\t),\n\tprotectedBranches: z\n\t\t.array(z.string().min(1, 'Protected branch name cannot be empty'))\n\t\t.optional()\n\t\t.describe('List of branches that cannot be deleted (defaults to [mainBranch, \"main\", \"master\", \"develop\"])'),\n\tcopyGitIgnoredPatterns: z\n\t\t.array(z.string().min(1, 'Pattern cannot be empty'))\n\t\t.optional()\n\t\t.describe('Glob patterns for gitignored files to copy to looms (e.g., [\"*.db\", \"data/*.sqlite\"]). Great for local dbs and large test data files that are too big to commit to git. Note: .env (dotenv-flow) files, iloom\\'s and claude\\'s local settings are automatically copied and do not need to be specified here.'),\n\tworkflows: WorkflowsSettingsSchemaNoDefaults.describe('Per-workflow-type permission configurations'),\n\tagents: z\n\t\t.record(z.string(), AgentSettingsSchema)\n\t\t.optional()\n\t\t.nullable()\n\t\t.describe(\n\t\t\t'Per-agent configuration overrides. Available agents: ' +\n\t\t\t\t'iloom-issue-analyzer (analyzes issues), ' +\n\t\t\t\t'iloom-issue-planner (creates implementation plans), ' +\n\t\t\t\t'iloom-issue-analyze-and-plan (combined analysis and planning), ' +\n\t\t\t\t'iloom-issue-complexity-evaluator (evaluates complexity), ' +\n\t\t\t\t'iloom-issue-enhancer (enhances issue descriptions), ' +\n\t\t\t\t'iloom-issue-implementer (implements code changes), ' +\n\t\t\t\t'iloom-code-reviewer (reviews code changes against requirements), ' +\n\t\t\t\t'iloom-artifact-reviewer (reviews artifacts before posting), ' +\n\t\t\t\t'iloom-swarm-worker (swarm worker agent, dynamically generated). ' +\n\t\t\t\t'Use swarmModel on any agent to override its model in swarm mode.',\n\t\t),\n\tspin: z\n\t\t.object({\n\t\t\tmodel: z.enum(['sonnet', 'opus', 'haiku']).optional(),\n\t\t\tswarmModel: z.enum(['sonnet', 'opus', 'haiku']).optional(),\n\t\t\tpostSwarmReview: z.boolean().optional(),\n\t\t})\n\t\t.optional()\n\t\t.describe('Spin orchestrator configuration'),\n\tplan: z\n\t\t.object({\n\t\t\tmodel: z.enum(['sonnet', 'opus', 'haiku']).optional(),\n\t\t\tplanner: z.enum(['claude', 'gemini', 'codex']).optional(),\n\t\t\treviewer: z.enum(['claude', 'gemini', 'codex', 'none']).optional(),\n\t\t})\n\t\t.optional()\n\t\t.describe('Plan command configuration'),\n\tsummary: z\n\t\t.object({\n\t\t\tmodel: z.enum(['sonnet', 'opus', 'haiku']).optional(),\n\t\t})\n\t\t.optional()\n\t\t.describe('Session summary generation configuration'),\n\tcapabilities: CapabilitiesSettingsSchemaNoDefaults.describe('Project capability configurations'),\n\tdatabaseProviders: DatabaseProvidersSettingsSchema.describe('Database provider configurations'),\n\tissueManagement: z\n\t\t.object({\n\t\t\tprovider: z.enum(['github', 'linear', 'jira']).optional().describe('Issue tracker provider (github, linear, jira)'),\n\t\t\tgithub: z\n\t\t\t\t.object({\n\t\t\t\t\tremote: z\n\t\t\t\t\t\t.string()\n\t\t\t\t\t\t.min(1, 'Remote name cannot be empty')\n\t\t\t\t\t\t.describe('Git remote name to use for GitHub operations'),\n\t\t\t\t})\n\t\t\t\t.optional(),\n\t\t\tlinear: z\n\t\t\t\t.object({\n\t\t\t\t\tteamId: z\n\t\t\t\t\t\t.string()\n\t\t\t\t\t\t.min(1, 'Team ID cannot be empty')\n\t\t\t\t\t\t.describe('Linear team identifier (e.g., \"ENG\", \"PLAT\")'),\n\t\t\t\t\tbranchFormat: z\n\t\t\t\t\t\t.string()\n\t\t\t\t\t\t.optional()\n\t\t\t\t\t\t.describe('Branch naming template for Linear issues'),\n\t\t\t\t\tapiToken: z\n\t\t\t\t\t\t.string()\n\t\t\t\t\t\t.optional()\n\t\t\t\t\t\t.describe('Linear API token (lin_api_...). SECURITY: Store in settings.local.json only, never commit to source control.'),\n\t\t\t\t})\n\t\t\t\t.optional(),\n\t\t\tjira: z\n\t\t\t\t.object({\n\t\t\t\t\thost: z\n\t\t\t\t\t\t.string()\n\t\t\t\t\t\t.min(1, 'Jira host cannot be empty')\n\t\t\t\t\t\t.describe('Jira instance URL (e.g., \"https://yourcompany.atlassian.net\")'),\n\t\t\t\t\tusername: z\n\t\t\t\t\t\t.string()\n\t\t\t\t\t\t.min(1, 'Jira username/email cannot be empty')\n\t\t\t\t\t\t.describe('Jira username or email address'),\n\t\t\t\t\tapiToken: z\n\t\t\t\t\t\t.string()\n\t\t\t\t\t\t.optional()\n\t\t\t\t\t\t.describe('Jira API token. SECURITY: Store in settings.local.json only, never commit to source control. Generate at: https://id.atlassian.com/manage-profile/security/api-tokens'),\n\t\t\t\t\tprojectKey: z\n\t\t\t\t\t\t.string()\n\t\t\t\t\t\t.min(1, 'Project key cannot be empty')\n\t\t\t\t\t\t.describe('Jira project key (e.g., \"PROJ\", \"ENG\")'),\n\t\t\t\t\tboardId: z\n\t\t\t\t\t\t.string()\n\t\t\t\t\t\t.optional()\n\t\t\t\t\t\t.describe('Jira board ID for sprint/workflow operations (optional)'),\n\t\t\t\t\ttransitionMappings: z\n\t\t\t\t\t\t.record(z.string(), z.string())\n\t\t\t\t\t\t.optional()\n\t\t\t\t\t\t.describe('Map iloom states to Jira transition names (e.g., {\"In Review\": \"Start Review\"})'),\n\t\t\t\t\tdefaultIssueType: z\n\t\t\t\t\t\t.string()\n\t\t\t\t\t\t.min(1)\n\t\t\t\t\t\t.optional()\n\t\t\t\t\t\t.describe('Default Jira issue type name for creating issues (e.g., \"Task\", \"Story\", \"Bug\")'),\n\t\t\t\t\tdefaultSubtaskType: z\n\t\t\t\t\t\t.string()\n\t\t\t\t\t\t.min(1)\n\t\t\t\t\t\t.optional()\n\t\t\t\t\t\t.describe('Default Jira issue type name for creating subtasks/child issues (e.g., \"Subtask\", \"Sub-task\")'),\n\t\t\t\t\tdoneStatuses: z\n\t\t\t\t\t\t.array(z.string())\n\t\t\t\t\t\t.optional()\n\t\t\t\t\t\t.default(['Done'])\n\t\t\t\t\t\t.describe('Status names to exclude from issue lists (e.g., [\"Done\", \"Closed\", \"Verify\"])'),\n\t\t\t\t})\n\t\t\t\t.optional(),\n\t\t})\n\t\t.optional()\n\t\t.describe('Issue management configuration'),\n\tmergeBehavior: z\n\t\t.object({\n\t\t\tmode: z.enum(['local', 'github-pr', 'github-draft-pr']).optional(),\n\t\t\tremote: z.string().optional(),\n\t\t\tautoCommitPush: z\n\t\t\t\t.boolean()\n\t\t\t\t.optional()\n\t\t\t\t.describe(\n\t\t\t\t\t'Auto-commit and push after code review in draft PR mode. Defaults to true when mode is github-draft-pr.'\n\t\t\t\t),\n\t\t\topenBrowserOnFinish: z\n\t\t\t\t.boolean()\n\t\t\t\t.optional()\n\t\t\t\t.describe(\n\t\t\t\t\t'Open the PR in the default browser after finishing in github-pr or github-draft-pr mode. Use --no-browser flag to override.'\n\t\t\t\t),\n\t\t})\n\t\t.optional()\n\t\t.describe('Merge behavior configuration: local (merge locally), github-pr (create PR), or github-draft-pr (create draft PR at start, mark ready on finish)'),\n\tide: z\n\t\t.object({\n\t\t\ttype: z\n\t\t\t\t.enum(['vscode', 'cursor', 'webstorm', 'sublime', 'intellij', 'windsurf', 'antigravity'])\n\t\t\t\t.optional()\n\t\t\t\t.describe(\n\t\t\t\t\t'IDE to launch when starting a loom. Options: vscode (Visual Studio Code), cursor (Cursor AI editor), ' +\n\t\t\t\t\t\t'webstorm (JetBrains WebStorm), sublime (Sublime Text), intellij (JetBrains IntelliJ IDEA), ' +\n\t\t\t\t\t\t'windsurf (Windsurf editor), antigravity (Antigravity IDE).'\n\t\t\t\t),\n\t\t})\n\t\t.optional()\n\t\t.describe(\n\t\t\t'IDE configuration for workspace launches. Controls which editor opens when you start a loom. ' +\n\t\t\t\t'Supports VSCode, Cursor, WebStorm, Sublime Text, IntelliJ, Windsurf, and Antigravity. ' +\n\t\t\t\t'Note: Color synchronization (title bar colors) only works with VSCode-compatible editors (vscode, cursor, windsurf, antigravity).'\n\t\t),\n\tcolors: z\n\t\t.object({\n\t\t\tterminal: z\n\t\t\t\t.boolean()\n\t\t\t\t.optional()\n\t\t\t\t.describe('Apply terminal background colors based on branch name (macOS only)'),\n\t\t\tvscode: z\n\t\t\t\t.boolean()\n\t\t\t\t.optional()\n\t\t\t\t.describe(\n\t\t\t\t\t'Apply VSCode/Cursor title bar colors based on branch name. ' +\n\t\t\t\t\t\t'Note: This modifies .vscode/settings.json which may be in source control.'\n\t\t\t\t),\n\t\t})\n\t\t.optional()\n\t\t.describe('Color synchronization settings for workspace identification'),\n\tattribution: z\n\t\t.enum(['off', 'upstreamOnly', 'on'])\n\t\t.optional()\n\t\t.describe(\n\t\t\t'Controls when iloom attribution appears in session summaries. ' +\n\t\t\t\t'\"off\" - never show attribution. ' +\n\t\t\t\t'\"upstreamOnly\" - only show for contributions to external repositories (e.g., open source). ' +\n\t\t\t\t'\"on\" - always show attribution.'\n\t\t),\n\tgit: z\n\t\t.object({\n\t\t\tcommitTimeout: z\n\t\t\t\t.number()\n\t\t\t\t.min(1000, 'Commit timeout must be at least 1000ms')\n\t\t\t\t.max(600000, 'Commit timeout cannot exceed 600000ms (10 minutes)')\n\t\t\t\t.optional()\n\t\t\t\t.describe('Timeout in milliseconds for git commit operations. Increase for long-running pre-commit hooks.'),\n\t\t})\n\t\t.optional()\n\t\t.describe('Git operation settings'),\n})\n\n/**\n * TypeScript type for Neon settings derived from Zod schema\n */\nexport type NeonSettings = z.infer<typeof NeonSettingsSchema>\n\n/**\n * TypeScript type for database providers settings derived from Zod schema\n */\nexport type DatabaseProvidersSettings = z.infer<typeof DatabaseProvidersSettingsSchema>\n\n/**\n * TypeScript type for agent settings derived from Zod schema\n */\nexport type AgentSettings = z.infer<typeof AgentSettingsSchema>\n\n/**\n * TypeScript type for spin agent settings derived from Zod schema\n */\nexport type SpinAgentSettings = z.infer<typeof SpinAgentSettingsSchema>\n\n/**\n * TypeScript type for plan command settings derived from Zod schema\n */\nexport type PlanCommandSettings = z.infer<typeof PlanCommandSettingsSchema>\n\n/**\n * TypeScript type for summary settings derived from Zod schema\n */\nexport type SummarySettings = z.infer<typeof SummarySettingsSchema>\n\n/**\n * TypeScript type for workflow permission configuration derived from Zod schema\n */\nexport type WorkflowPermission = z.infer<typeof WorkflowPermissionSchema>\n\n/**\n * TypeScript type for workflows settings derived from Zod schema\n */\nexport type WorkflowsSettings = z.infer<typeof WorkflowsSettingsSchema>\n\n/**\n * TypeScript type for capabilities settings derived from Zod schema\n */\nexport type CapabilitiesSettings = z.infer<typeof CapabilitiesSettingsSchema>\n\n/**\n * TypeScript type for IDE settings derived from Zod schema\n */\nexport type IdeSettings = z.infer<typeof IloomSettingsSchema>['ide']\n\n/**\n * TypeScript type for iloom settings derived from Zod schema\n */\nexport type IloomSettings = z.infer<typeof IloomSettingsSchema>\n\n/**\n * TypeScript input type for iloom settings (before Zod defaults are applied)\n * Used for validation where partial/input objects need to be accepted\n */\nexport type IloomSettingsInput = z.input<typeof IloomSettingsSchema>\n\nfunction redactSensitiveFields(obj: unknown): unknown {\n\tif (obj === null || obj === undefined) return obj\n\tif (typeof obj !== 'object') return obj\n\tif (Array.isArray(obj)) return obj.map(redactSensitiveFields)\n\tconst sensitiveKeys = ['apitoken', 'token', 'secret', 'password']\n\tconst result: Record<string, unknown> = {}\n\tfor (const [key, value] of Object.entries(obj as Record<string, unknown>)) {\n\t\tconst lowerKey = key.toLowerCase()\n\t\tif (sensitiveKeys.some(s => lowerKey.includes(s)) && typeof value === 'string') {\n\t\t\tresult[key] = '[REDACTED]'\n\t\t} else if (typeof value === 'object' && value !== null) {\n\t\t\tresult[key] = redactSensitiveFields(value)\n\t\t} else {\n\t\t\tresult[key] = value\n\t\t}\n\t}\n\treturn result\n}\n\n/**\n * Manages project-level settings from .iloom/settings.json\n */\nexport class SettingsManager {\n\t/**\n\t * Load settings from global, project, and local sources with proper precedence\n\t * Merge hierarchy (lowest to highest priority):\n\t * 1. Global settings (~/.config/iloom-ai/settings.json)\n\t * 2. Project settings (<PROJECT_ROOT>/.iloom/settings.json)\n\t * 3. Local settings (<PROJECT_ROOT>/.iloom/settings.local.json)\n\t * 4. CLI overrides (--set flags)\n\t * Returns empty object if all files don't exist (not an error)\n\t */\n\tasync loadSettings(\n\t\tprojectRoot?: string,\n\t\tcliOverrides?: Partial<IloomSettings>,\n\t): Promise<IloomSettings> {\n\t\tconst root = this.getProjectRoot(projectRoot)\n\n\t\t// Load global settings (lowest priority)\n\t\tconst globalSettings = await this.loadGlobalSettingsFile()\n\t\tconst globalSettingsPath = this.getGlobalSettingsPath()\n\t\tlogger.debug(`🌍 Global settings from ${globalSettingsPath}:`, JSON.stringify(redactSensitiveFields(globalSettings), null, 2))\n\n\t\t// Load base settings from settings.json\n\t\tconst baseSettings = await this.loadSettingsFile(root, 'settings.json')\n\t\tconst baseSettingsPath = path.join(root, '.iloom', 'settings.json')\n\t\tlogger.debug(`📄 Base settings from ${baseSettingsPath}:`, JSON.stringify(redactSensitiveFields(baseSettings), null, 2))\n\n\t\t// Load local overrides from settings.local.json\n\t\tconst localSettings = await this.loadSettingsFile(root, 'settings.local.json')\n\t\tconst localSettingsPath = path.join(root, '.iloom', 'settings.local.json')\n\t\tlogger.debug(`📄 Local settings from ${localSettingsPath}:`, JSON.stringify(redactSensitiveFields(localSettings), null, 2))\n\n\t\t// Deep merge with priority: cliOverrides > localSettings > baseSettings > globalSettings\n\t\tlet merged = this.mergeSettings(this.mergeSettings(globalSettings, baseSettings), localSettings)\n\t\tlogger.debug('🔄 After merging global + base + local settings:', JSON.stringify(redactSensitiveFields(merged), null, 2))\n\n\t\tif (cliOverrides && Object.keys(cliOverrides).length > 0) {\n\t\t\tlogger.debug('⚙️ CLI overrides to apply:', JSON.stringify(redactSensitiveFields(cliOverrides), null, 2))\n\t\t\tmerged = this.mergeSettings(merged, cliOverrides)\n\t\t\tlogger.debug('🔄 After applying CLI overrides:', JSON.stringify(redactSensitiveFields(merged), null, 2))\n\t\t}\n\n\t\t// Validate merged result\n\t\ttry {\n\t\t\tconst finalSettings = IloomSettingsSchema.parse(merged)\n\n\t\t\t// Debug: Log final merged configuration\n\t\t\tthis.logFinalConfiguration(finalSettings)\n\n\t\t\treturn finalSettings\n\t\t} catch (error) {\n\t\t\t// Show all Zod validation errors\n\t\t\tif (error instanceof z.ZodError) {\n\t\t\t\tconst errorMsg = this.formatAllZodErrors(error, '<merged settings>')\n\t\t\t\t// Enhance error message if CLI overrides were applied\n\t\t\t\tif (cliOverrides && Object.keys(cliOverrides).length > 0) {\n\t\t\t\t\tthrow new Error(`${errorMsg.message}\\n\\nNote: CLI overrides were applied. Check your --set arguments.`)\n\t\t\t\t}\n\t\t\t\tthrow errorMsg\n\t\t\t}\n\t\t\tthrow error\n\t\t}\n\t}\n\n\t/**\n\t * Log the final merged configuration for debugging\n\t */\n\tprivate logFinalConfiguration(settings: IloomSettings): void {\n\t\tlogger.debug('📋 Final merged configuration:', JSON.stringify(redactSensitiveFields(settings), null, 2))\n\t}\n\n\t/**\n\t * Load and parse a single settings file\n\t * Returns empty object if file doesn't exist (not an error)\n\t * Uses non-defaulting schema to prevent polluting partial settings with defaults before merge\n\t */\n\tprivate async loadSettingsFile(\n\t\tprojectRoot: string,\n\t\tfilename: string,\n\t): Promise<z.infer<typeof IloomSettingsSchemaNoDefaults>> {\n\t\tconst settingsPath = path.join(projectRoot, '.iloom', filename)\n\n\t\ttry {\n\t\t\tconst content = await readFile(settingsPath, 'utf-8')\n\t\t\tlet parsed: unknown\n\n\t\t\ttry {\n\t\t\t\tparsed = JSON.parse(content)\n\t\t\t} catch (error) {\n\t\t\t\tthrow new Error(\n\t\t\t\t\t`Failed to parse settings file at ${settingsPath}: ${error instanceof Error ? error.message : 'Invalid JSON'}`,\n\t\t\t\t)\n\t\t\t}\n\n\t\t\t// Basic type checking - ensure it's an object, but don't validate schema completeness\n\t\t\t// Individual files may be incomplete (e.g., Linear config split between files)\n\t\t\t// Final validation will happen on the merged result in loadSettings()\n\t\t\tif (typeof parsed !== 'object' || parsed === null || Array.isArray(parsed)) {\n\t\t\t\tthrow new Error(\n\t\t\t\t\t`Settings validation failed at ${filename}:\\n - root: Expected object, received ${typeof parsed}`\n\t\t\t\t)\n\t\t\t}\n\t\t\treturn parsed as z.infer<typeof IloomSettingsSchemaNoDefaults>\n\t\t} catch (error) {\n\t\t\t// File not found is not an error - return empty settings\n\t\t\tif ((error as { code?: string }).code === 'ENOENT') {\n\t\t\t\tlogger.debug(`No settings file found at ${settingsPath}, using defaults`)\n\t\t\t\treturn {}\n\t\t\t}\n\n\t\t\t// Re-throw parsing errors\n\t\t\tthrow error\n\t\t}\n\t}\n\n\t/**\n\t * Deep merge two settings objects with priority to override\n\t * Uses deepmerge library with array replacement strategy\n\t */\n\tprivate mergeSettings(\n\t\tbase: Partial<IloomSettings> | z.infer<typeof IloomSettingsSchemaNoDefaults>,\n\t\toverride: Partial<IloomSettings> | z.infer<typeof IloomSettingsSchemaNoDefaults>,\n\t): IloomSettings {\n\t\t// Use deepmerge with array replacement (not concatenation)\n\t\t// Type assertion is safe because the merged result will be validated with IloomSettingsSchema\n\t\t// which applies all the defaults after merging\n\t\treturn deepmerge(base as Record<string, unknown>, override as Record<string, unknown>, {\n\t\t\t// Replace arrays instead of concatenating them\n\t\t\tarrayMerge: (_destinationArray, sourceArray) => sourceArray,\n\t\t}) as IloomSettings\n\t}\n\n\t/**\n\t * Format all Zod validation errors into a single error message\n\t */\n\tprivate formatAllZodErrors(error: z.ZodError, settingsPath: string): Error {\n\t\tconst errorMessages = error.issues.map(issue => {\n\t\t\tconst path = issue.path.length > 0 ? 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Ignoring global settings.`,\n\t\t\t\t)\n\t\t\t\treturn {}\n\t\t\t}\n\n\t\t\t// Validate with non-defaulting schema\n\t\t\ttry {\n\t\t\t\tconst validated = IloomSettingsSchemaNoDefaults.strict().parse(parsed)\n\t\t\t\treturn validated\n\t\t\t} catch (error) {\n\t\t\t\tif (error instanceof z.ZodError) {\n\t\t\t\t\tconst errorMsg = this.formatAllZodErrors(error, 'global settings')\n\t\t\t\t\tlogger.warn(`${errorMsg.message}. Ignoring global settings.`)\n\t\t\t\t} else {\n\t\t\t\t\tlogger.warn(`Validation error in global settings: ${error instanceof Error ? error.message : 'Unknown error'}. 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- {"version":3,"sources":["../src/commands/ignite.ts","../src/lib/ClaudeHookManager.ts","../src/lib/SwarmSetupService.ts","../src/utils/language-detector.ts","../src/utils/system-prompt-writer.ts"],"sourcesContent":["import path from 'path'\nimport fs from 'fs-extra'\nimport { logger, createStderrLogger } from '../utils/logger.js'\nimport { withLogger } from '../utils/logger-context.js'\nimport { ClaudeWorkflowOptions } from '../lib/ClaudeService.js'\nimport { GitWorktreeManager } from '../lib/GitWorktreeManager.js'\nimport { launchClaude, ClaudeCliOptions } from '../utils/claude.js'\nimport { PromptTemplateManager, TemplateVariables, buildReviewTemplateVariables } from '../lib/PromptTemplateManager.js'\nimport { generateIssueManagementMcpConfig, generateRecapMcpConfig, generateAndWriteMcpConfigFile, resolveRecapFilePath, readRecapFile, writeRecapFile } from '../utils/mcp.js'\nimport { AgentManager } from '../lib/AgentManager.js'\nimport { IssueTrackerFactory } from '../lib/IssueTrackerFactory.js'\nimport { SettingsManager, type IloomSettings } from '../lib/SettingsManager.js'\nimport { MetadataManager } from '../lib/MetadataManager.js'\nimport { extractSettingsOverrides } from '../utils/cli-overrides.js'\nimport { FirstRunManager } from '../utils/FirstRunManager.js'\nimport { extractIssueNumber, isValidGitRepo, getWorktreeRoot, findMainWorktreePathWithSettings, generateWorktreePath } from '../utils/git.js'\nimport { getWorkspacePort } from '../utils/port.js'\nimport { readFile } from 'fs/promises'\nimport { ClaudeHookManager } from '../lib/ClaudeHookManager.js'\nimport type { OneShotMode, ComplexityOverride } from '../types/index.js'\nimport { fetchChildIssueDetails } from '../utils/list-children.js'\nimport { buildDependencyMap } from '../utils/dependency-map.js'\nimport { SwarmSetupService } from '../lib/SwarmSetupService.js'\nimport type { LoomMetadata } from '../lib/MetadataManager.js'\nimport { TelemetryService } from '../lib/TelemetryService.js'\nimport { detectProjectLanguage } from '../utils/language-detector.js'\nimport { prepareSystemPromptForPlatform } from '../utils/system-prompt-writer.js'\nimport { preAcceptClaudeTrust } from '../utils/claude-trust.js'\n\n/**\n * Error thrown when the spin command is run from an invalid location\n */\nexport class WorktreeValidationError extends Error {\n\tconstructor(\n\t\tmessage: string,\n\t\tpublic readonly suggestion: string\n\t) {\n\t\tsuper(message)\n\t\tthis.name = 'WorktreeValidationError'\n\t}\n}\n\n/**\n * IgniteCommand: Auto-detect workspace context and launch Claude\n *\n * This command:\n * 1. Auto-detects context from current directory and git branch\n * 2. Loads appropriate prompt template with variable substitution\n * 3. Launches Claude with existing agent system (NO changes to agent loading)\n * 4. Executes in current terminal (not opening a new window)\n *\n * CRITICAL: This command works with agents exactly as they currently function.\n * NO modifications to agent loading mechanisms.\n */\nexport class IgniteCommand {\n\tprivate templateManager: PromptTemplateManager\n\tprivate gitWorktreeManager: GitWorktreeManager\n\tprivate agentManager: AgentManager\n\tprivate settingsManager: SettingsManager\n\tprivate firstRunManager: FirstRunManager\n\tprivate hookManager: ClaudeHookManager\n\tprivate settings?: IloomSettings\n\n\tconstructor(\n\t\ttemplateManager?: PromptTemplateManager,\n\t\tgitWorktreeManager?: GitWorktreeManager,\n\t\tagentManager?: AgentManager,\n\t\tsettingsManager?: SettingsManager,\n\t\tfirstRunManager?: FirstRunManager,\n\t\thookManager?: ClaudeHookManager\n\t) {\n\t\tthis.templateManager = templateManager ?? new PromptTemplateManager()\n\t\tthis.gitWorktreeManager = gitWorktreeManager ?? new GitWorktreeManager()\n\t\tthis.agentManager = agentManager ?? new AgentManager()\n\t\tthis.settingsManager = settingsManager ?? new SettingsManager()\n\t\tthis.firstRunManager = firstRunManager ?? new FirstRunManager('spin')\n\t\tthis.hookManager = hookManager ?? new ClaudeHookManager()\n\t}\n\n\t/**\n\t * Validate that we're not running from the main worktree\n\t * @param workspacePath - Optional explicit workspace path; defaults to process.cwd()\n\t * @throws WorktreeValidationError if running from main worktree\n\t */\n\tprivate async validateNotMainWorktree(workspacePath?: string): Promise<void> {\n\t\tconst currentDir = workspacePath ?? process.cwd()\n\n\t\t// Step 1: Check if we're in a git repository at all\n\t\tconst isGitRepo = await isValidGitRepo(currentDir)\n\t\tif (!isGitRepo) {\n\t\t\t// Not a git repo - let detectWorkspaceContext handle this gracefully\n\t\t\treturn\n\t\t}\n\n\t\t// Step 2: Get the worktree root (handles subdirectories)\n\t\tconst worktreeRoot = await getWorktreeRoot(currentDir)\n\t\tif (!worktreeRoot) {\n\t\t\t// Could not determine root - let detectWorkspaceContext handle this\n\t\t\treturn\n\t\t}\n\n\t\t// Step 3: Check if this path is a registered git worktree\n\t\tconst worktrees = await this.gitWorktreeManager.listWorktrees()\n\t\tconst currentWorktree = worktrees.find(wt => wt.path === worktreeRoot)\n\n\t\tif (!currentWorktree) {\n\t\t\t// Not a registered worktree - let detectWorkspaceContext handle this\n\t\t\treturn\n\t\t}\n\n\t\t// Step 4: Check if this is the main worktree\n\t\tconst isMain = await this.gitWorktreeManager.isMainWorktree(currentWorktree, this.settingsManager)\n\t\tif (isMain) {\n\t\t\tthrow new WorktreeValidationError(\n\t\t\t\t'You cannot run the command from the main worktree.',\n\t\t\t\t\"Navigate to a feature worktree created by 'il start <issue>' and run 'il spin' from there.\"\n\t\t\t)\n\t\t}\n\t}\n\n\t/**\n\t * Print mode options for headless/CI execution\n\t */\n\tpublic printOptions: {\n\t\tprint?: boolean\n\t\toutputFormat?: 'json' | 'stream-json' | 'text'\n\t\tverbose?: boolean\n\t\tjson?: boolean // --json flag: output final JSON object\n\t\tjsonStream?: boolean // --json-stream flag: stream JSONL to stdout\n\t} | undefined\n\n\t/**\n\t * Main entry point for spin command\n\t * @param oneShot - One-shot automation mode\n\t * @param printOptions - Print mode options for headless/CI execution\n\t * @param skipCleanup - Skip cleanup after execution\n\t * @param workspacePath - Optional explicit workspace path for programmatic invocation (avoids process.chdir())\n\t * @param complexity - Override complexity evaluation (session-only, takes priority over metadata)\n\t */\n\tasync execute(oneShot?: OneShotMode, printOptions?: {\n\t\tprint?: boolean\n\t\toutputFormat?: 'json' | 'stream-json' | 'text'\n\t\tverbose?: boolean\n\t\tjson?: boolean\n\t\tjsonStream?: boolean\n\t}, skipCleanup?: boolean, workspacePath?: string, complexity?: ComplexityOverride): Promise<void> {\n\t\tthis.printOptions = printOptions\n\n\t\t// Wrap execution in stderr logger for JSON modes to keep stdout clean\n\t\tconst isJsonMode = (this.printOptions?.json ?? false) || (this.printOptions?.jsonStream ?? false)\n\t\tif (isJsonMode) {\n\t\t\tconst jsonLogger = createStderrLogger()\n\t\t\treturn withLogger(jsonLogger, () => this.executeInternal(oneShot, skipCleanup, workspacePath, complexity))\n\t\t}\n\n\t\treturn this.executeInternal(oneShot, skipCleanup, workspacePath, complexity)\n\t}\n\n\t/**\n\t * Internal execution method (separated for withLogger wrapping)\n\t */\n\tprivate async executeInternal(oneShot?: OneShotMode, skipCleanup?: boolean, workspacePath?: string, complexity?: ComplexityOverride): Promise<void> {\n\t\t// Set ILOOM=1 so hooks know this is an iloom session\n\t\t// This is inherited by the Claude child process\n\t\tprocess.env.ILOOM = '1'\n\n\t\t// Validate we're not in the main worktree first\n\t\ttry {\n\t\t\tawait this.validateNotMainWorktree(workspacePath)\n\t\t} catch (error) {\n\t\t\tif (error instanceof WorktreeValidationError) {\n\t\t\t\tlogger.error(error.message)\n\t\t\t\tlogger.info(error.suggestion)\n\t\t\t\tthrow error\n\t\t\t}\n\t\t\tthrow error\n\t\t}\n\n\t\ttry {\n\t\t\tlogger.info('🚀 Your loom is spinning up, please wait...')\n\n\t\t\t// Step 0.5: Check if this is first-time user\n\t\t\tconst isFirstRun = await this.firstRunManager.isFirstRun()\n\t\t\tif (isFirstRun) {\n\t\t\t\tlogger.success('Welcome to iloom! Preparing first-time experience...')\n\t\t\t}\n\n\t\t\t// Step 0.6: Install Claude hooks for VSCode integration (idempotent, quick)\n\t\t\tawait this.hookManager.installHooks()\n\n\t\t\t// Step 1: Auto-detect workspace context\n\t\t\tconst context = await this.detectWorkspaceContext(workspacePath)\n\n\t\t\tlogger.debug('Auto-detected workspace context', { context })\n\n\t\t\t// Inform user what context was detected\n\t\t\tthis.logDetectedContext(context)\n\n\t\t\tlogger.info('📝 Loading prompt template and preparing Claude...')\n\n\t\t\t// Step 2: Read metadata early to get draftPrNumber and draftPrUrl for templates and MCP config\n\t\t\tconst metadataManager = new MetadataManager()\n\t\t\tconst metadata = await metadataManager.readMetadata(context.workspacePath)\n\t\t\tconst draftPrNumber = metadata?.draftPrNumber ?? undefined\n\t\t\t// Extract draft PR URL from prUrls map if available\n\t\t\tconst draftPrUrl = draftPrNumber && metadata?.prUrls?.[String(draftPrNumber)]\n\t\t\t\t? metadata.prUrls[String(draftPrNumber)]\n\t\t\t\t: undefined\n\n\t\t\t// Step 2.0.3: Prevent il spin in child worktrees of epic looms\n\t\t\t// Child issues managed by a swarm orchestrator must not launch independent agents.\n\t\t\t// Exception: child epics (issueType === 'epic') need il spin for their own swarm.\n\t\t\tif (metadata?.parentLoom?.type === 'epic' && metadata.issueType !== 'epic') {\n\t\t\t\tthrow new WorktreeValidationError(\n\t\t\t\t\t'Cannot run il spin in a child worktree of an epic loom. The swarm orchestrator manages agent execution for these issues.',\n\t\t\t\t\t'Run il spin from the parent epic worktree instead to launch the swarm orchestrator.'\n\t\t\t\t)\n\t\t\t}\n\n\t\t\t// Step 2.0.4: Determine effective oneShot mode\n\t\t\t// If print mode is enabled, force noReview to skip interactive reviews\n\t\t\t// If oneShot is provided (any value including 'default'), use it\n\t\t\t// If oneShot is undefined (not passed), use metadata or fallback to 'default'\n\t\t\t// Note: metadata?.oneShot can be null (for legacy looms), so we need double nullish coalescing\n\t\t\tconst storedOneShot = metadata?.oneShot ?? 'default'\n\t\t\tconst isHeadlessForOneShot = this.printOptions?.print ?? false\n\t\t\tconst effectiveOneShot: OneShotMode = isHeadlessForOneShot ? 'noReview' : (oneShot ?? storedOneShot)\n\n\t\t\t// Determine effective complexity override\n\t\t\t// CLI flag takes priority over loom metadata\n\t\t\tconst effectiveComplexity = complexity ?? metadata?.complexity ?? undefined\n\n\t\t\t// Set recap complexity if overridden and not already set\n\t\t\tif (effectiveComplexity) {\n\t\t\t\ttry {\n\t\t\t\t\tconst recapFilePath = resolveRecapFilePath(context.workspacePath)\n\t\t\t\t\tconst recap = await readRecapFile(recapFilePath)\n\t\t\t\t\tif (!recap.complexity) {\n\t\t\t\t\t\trecap.complexity = { level: effectiveComplexity, reason: 'Overridden via CLI flag', timestamp: new Date().toISOString() }\n\t\t\t\t\t\tawait writeRecapFile(recapFilePath, recap)\n\t\t\t\t\t}\n\t\t\t\t} catch (error) {\n\t\t\t\t\tlogger.debug(`Failed to set recap complexity: ${error instanceof Error ? error.message : error}`)\n\t\t\t\t}\n\t\t\t}\n\n\t\t\t// Step 2.0.5: Load settings early if not cached (needed for port calculation)\n\t\t\tif (!this.settings) {\n\t\t\t\tconst cliOverrides = extractSettingsOverrides()\n\t\t\t\tthis.settings = await this.settingsManager.loadSettings(undefined, cliOverrides)\n\t\t\t}\n\n\t\t\t// Step 2.0.5.1: Track session.started telemetry\n\t\t\ttry {\n\t\t\t\tconst hasNeon = !!this.settings?.databaseProviders?.neon\n\t\t\t\tconst language = await detectProjectLanguage(context.workspacePath)\n\t\t\t\tTelemetryService.getInstance().track('session.started', {\n\t\t\t\t\thas_neon: hasNeon,\n\t\t\t\t\tlanguage,\n\t\t\t\t})\n\t\t\t} catch (error) {\n\t\t\t\tlogger.debug(`Telemetry session.started tracking failed: ${error instanceof Error ? error.message : error}`)\n\t\t\t}\n\n\t\t\t// Step 2.0.6: Calculate port for web-capable looms\n\t\t\tif (metadata?.capabilities?.includes('web') && context.branchName) {\n\t\t\t\tconst basePort = this.settings?.capabilities?.web?.basePort ?? 3000\n\t\t\t\tcontext.port = await getWorkspacePort({\n\t\t\t\t\tbasePort,\n\t\t\t\t\tworktreePath: context.workspacePath,\n\t\t\t\t\tworktreeBranch: context.branchName,\n\t\t\t\t})\n\t\t\t\tlogger.info(`🌐 Development server port: ${context.port}`)\n\t\t\t}\n\n\t\t\t// Step 2.1: Fetch and persist epic child data if this is an epic loom\n\t\t\t// Detection: check for childIssues already stored (re-spin of an epic)\n\t\t\t// or check for 'epic' issueType once issue #624 adds it\n\t\t\tconst isEpicLoom = metadata && metadata.issue_numbers.length > 0\n\t\t\t\t&& ((metadata.childIssues?.length ?? 0) > 0 || metadata.issueType === 'epic')\n\t\t\tif (isEpicLoom && this.settings) {\n\t\t\t\tawait this.fetchAndStoreEpicChildData(metadataManager, metadata, context.workspacePath, this.settings)\n\t\t\t}\n\n\t\t\t// Step 2.1.1: If this is an epic loom, enter swarm mode\n\t\t\tif (isEpicLoom && this.settings) {\n\t\t\t\t// Re-read metadata to get freshly persisted child data\n\t\t\t\tconst freshMetadata = await metadataManager.readMetadata(context.workspacePath)\n\t\t\t\tif (freshMetadata && freshMetadata.childIssues.length > 0) {\n\t\t\t\t\tawait this.executeSwarmMode(\n\t\t\t\t\t\tfreshMetadata,\n\t\t\t\t\t\tcontext.workspacePath,\n\t\t\t\t\t\tcontext.branchName ?? '',\n\t\t\t\t\t\tmetadataManager,\n\t\t\t\t\t\tskipCleanup,\n\t\t\t\t\t)\n\t\t\t\t\treturn\n\t\t\t\t}\n\t\t\t}\n\n\t\t\t// Step 2.2: Get prompt template with variable substitution\n\t\t\tconst variables = this.buildTemplateVariables(context, effectiveOneShot, draftPrNumber, draftPrUrl, effectiveComplexity)\n\n\t\t\t// Step 2.5: Add first-time user context if needed\n\t\t\tif (isFirstRun) {\n\t\t\t\tvariables.FIRST_TIME_USER = true\n\t\t\t\tvariables.README_CONTENT = await this.loadReadmeContent()\n\t\t\t\tvariables.SETTINGS_SCHEMA_CONTENT = await this.loadSettingsSchemaContent()\n\t\t\t}\n\n\t\t\tconst systemInstructions = await this.templateManager.getPrompt(context.type, variables)\n\n\t\t\t// User prompt to trigger the workflow (includes one-shot bypass instructions if needed)\n\t\t\tconst userPrompt = this.buildUserPrompt(effectiveOneShot)\n\n\t\t\t// Step 3: Determine model and permission mode based on workflow type\n\t\t\tconst model = this.settingsManager.getSpinModel(this.settings)\n\t\t\tlet permissionMode = this.getPermissionModeForWorkflow(context.type)\n\n\t\t\t// Override permission mode if bypassPermissions oneShot mode\n\t\t\tif (effectiveOneShot === 'bypassPermissions') {\n\t\t\t\tpermissionMode = 'bypassPermissions'\n\t\t\t}\n\n\t\t\t// Display warning if bypassPermissions is used\n\t\t\tif (permissionMode === 'bypassPermissions') {\n\t\t\t\tlogger.warn(\n\t\t\t\t\t'⚠️ WARNING: Using bypassPermissions mode - Claude will execute all tool calls without confirmation. ' +\n\t\t\t\t\t\t'This can be dangerous. Use with caution.'\n\t\t\t\t)\n\t\t\t}\n\n\t\t\t// Step 4: Build Claude CLI options\n\t\t\t// Session ID must come from loom metadata - no fallback generation\n\t\t\tconst sessionId = metadata?.sessionId\n\t\t\tif (!sessionId) {\n\t\t\t\tthrow new Error('No session ID found in loom metadata. This loom may need to be recreated with `il start`.')\n\t\t\t}\n\t\t\tlogger.debug('Using session ID from metadata', { sessionId })\n\n\t\t\t// Determine if we're in print/headless mode\n\t\t\tconst isHeadless = this.printOptions?.print ?? false\n\n\t\t\tconst claudeOptions: ClaudeCliOptions = {\n\t\t\t\theadless: isHeadless,\n\t\t\t\taddDir: context.workspacePath,\n\t\t\t\tsessionId, // Enable Claude Code session resume\n\t\t\t}\n\n\t\t\t// Add optional model if present\n\t\t\tif (model !== undefined) {\n\t\t\t\tclaudeOptions.model = model\n\t\t\t}\n\n\t\t\t// Add permission mode if not default\n\t\t\t// When print mode is enabled, force bypassPermissions for autonomous execution\n\t\t\tif (isHeadless) {\n\t\t\t\tpermissionMode = 'bypassPermissions'\n\t\t\t}\n\t\t\tif (permissionMode !== undefined && permissionMode !== 'default') {\n\t\t\t\tclaudeOptions.permissionMode = permissionMode\n\t\t\t}\n\n\t\t\t// Add output format and verbose options if provided (print mode only)\n\t\t\tif (this.printOptions?.outputFormat !== undefined) {\n\t\t\t\tclaudeOptions.outputFormat = this.printOptions.outputFormat\n\t\t\t}\n\t\t\tif (this.printOptions?.verbose !== undefined) {\n\t\t\t\tclaudeOptions.verbose = this.printOptions.verbose\n\t\t\t}\n\n\t\t\t// Add JSON mode if specified (requires print mode)\n\t\t\tif (this.printOptions?.json) {\n\t\t\t\tclaudeOptions.jsonMode = 'json'\n\t\t\t\tclaudeOptions.outputFormat = 'stream-json' // Force stream-json for parsing\n\t\t\t} else if (this.printOptions?.jsonStream) {\n\t\t\t\tclaudeOptions.jsonMode = 'stream'\n\t\t\t\tclaudeOptions.outputFormat = 'stream-json' // Force stream-json for streaming\n\t\t\t}\n\n\t\t\t// Add optional branch name for context\n\t\t\tif (context.branchName !== undefined) {\n\t\t\t\tclaudeOptions.branchName = context.branchName\n\t\t\t}\n\n\t\t\t// Step 4.5: Generate MCP config and tool filtering for issue/PR workflows\n\t\t\tlet mcpConfig: Record<string, unknown>[] | undefined\n\t\t\tlet allowedTools: string[] | undefined\n\t\t\tlet disallowedTools: string[] | undefined\n\n\t\t\tif (context.type === 'issue' || context.type === 'pr') {\n\t\t\t\ttry {\n\t\t\t\t\tconst provider = this.settings ? IssueTrackerFactory.getProviderName(this.settings) : 'github'\n\t\t\t\t\t// Pass draftPrNumber to route comments to PR when in github-draft-pr mode\n\t\t\t\t\tmcpConfig = await generateIssueManagementMcpConfig(context.type, undefined, provider, this.settings, draftPrNumber)\n\t\t\t\t\tlogger.debug('Generated MCP configuration for issue management', { provider, draftPrNumber })\n\n\t\t\t\t\t// Configure tool filtering for issue/PR workflows\n\t\t\t\t\t// Note: set_goal is only allowed for PR workflow (user's purpose unclear)\n\t\t\t\t\t// For issue workflow, the issue title provides context so set_goal is not needed\n\t\t\t\t\tconst baseTools = [\n\t\t\t\t\t\t'mcp__issue_management__get_issue',\n\t\t\t\t\t\t'mcp__issue_management__get_comment',\n\t\t\t\t\t\t'mcp__issue_management__create_comment',\n\t\t\t\t\t\t'mcp__issue_management__update_comment',\n\t\t\t\t\t\t'mcp__issue_management__create_issue',\n\t\t\t\t\t\t'mcp__issue_management__close_issue',\n\t\t\t\t\t\t'mcp__issue_management__reopen_issue',\n\t\t\t\t\t\t'mcp__issue_management__edit_issue',\n\t\t\t\t\t\t'mcp__recap__add_entry',\n\t\t\t\t\t\t'mcp__recap__get_recap',\n\t\t\t\t\t\t'mcp__recap__add_artifact',\n\t\t\t\t\t\t'mcp__recap__set_complexity',\n\t\t\t\t\t\t'mcp__recap__set_loom_state',\n\t\t\t\t\t\t'mcp__recap__get_loom_state'\n\t\t\t\t\t]\n\t\t\t\t\tallowedTools = context.type === 'pr'\n\t\t\t\t\t\t? [...baseTools, 'mcp__issue_management__get_pr', 'mcp__issue_management__get_review_comments', 'mcp__recap__set_goal']\n\t\t\t\t\t\t: baseTools\n\t\t\t\t\tdisallowedTools = context.type === 'pr'\n\t\t\t\t\t\t? ['Bash(gh issue comment:*)']\n\t\t\t\t\t\t: ['Bash(gh api:*)', 'Bash(gh issue comment:*)']\n\n\t\t\t\t\tlogger.debug('Configured tool filtering for issue/PR workflow', { allowedTools, disallowedTools })\n\t\t\t\t} catch (error) {\n\t\t\t\t\t// Log warning but continue without MCP\n\t\t\t\t\tlogger.warn(`Failed to generate MCP config: ${error instanceof Error ? error.message : 'Unknown error'}`)\n\t\t\t\t}\n\t\t\t} else {\n\t\t\t\t// Regular/branch workflow - allow recap tools (including set_goal since no issue/PR context)\n\t\t\t\tallowedTools = [\n\t\t\t\t\t'mcp__recap__set_goal',\n\t\t\t\t\t'mcp__recap__add_entry',\n\t\t\t\t\t'mcp__recap__get_recap',\n\t\t\t\t\t'mcp__recap__set_complexity',\n\t\t\t\t\t'mcp__recap__set_loom_state',\n\t\t\t\t\t'mcp__recap__get_loom_state',\n\t\t\t\t]\n\t\t\t\tlogger.debug('Configured tool filtering for regular workflow', { allowedTools })\n\t\t\t}\n\n\t\t\t// Step 4.5.1: Generate recap MCP config (always added for all workflow types)\n\t\t\t// Reuses metadata already read in Step 2\n\t\t\ttry {\n\t\t\t\tif (!metadata) {\n\t\t\t\t\tthrow new Error('No loom metadata found for this workspace')\n\t\t\t\t}\n\t\t\t\tconst recapMcpConfig = generateRecapMcpConfig(context.workspacePath, metadata)\n\t\t\t\tif (mcpConfig) {\n\t\t\t\t\tmcpConfig.push(...recapMcpConfig)\n\t\t\t\t} else {\n\t\t\t\t\tmcpConfig = recapMcpConfig\n\t\t\t\t}\n\t\t\t\tlogger.debug('Generated MCP configuration for recap server')\n\t\t\t} catch (error) {\n\t\t\t\t// Log warning but continue without recap MCP\n\t\t\t\tlogger.warn(`Failed to generate recap MCP config: ${error instanceof Error ? error.message : 'Unknown error'}`)\n\t\t\t}\n\n\t\t\t// Step 4.6: Load agent configurations using cached settings\n\t\t\tlet agents: Record<string, unknown> | undefined\n\t\t\ttry {\n\t\t\t\t// Use cached settings from Step 2.5\n\t\t\t\tif (this.settings?.agents && Object.keys(this.settings.agents).length > 0) {\n\t\t\t\t\tlogger.debug('Loaded project settings', {\n\t\t\t\t\t\tagentOverrides: Object.keys(this.settings.agents),\n\t\t\t\t\t})\n\t\t\t\t}\n\n\t\t\t\t// Load agents with settings overrides and template variables for substitution\n\t\t\t\t// Exclude init-only agents (e.g., framework-detector which is only for il init)\n\t\t\t\tconst loadedAgents = await this.agentManager.loadAgents(\n\t\t\t\t\tthis.settings,\n\t\t\t\t\tvariables,\n\t\t\t\t\t['*.md', '!iloom-framework-detector.md']\n\t\t\t\t)\n\n\t\t\t\tif (process.platform === 'darwin') {\n\t\t\t\t\t// macOS: pass agents inline via --agents flag (unchanged behavior)\n\t\t\t\t\tagents = this.agentManager.formatForCli(loadedAgents)\n\t\t\t\t\tlogger.debug('Loaded agent configurations for CLI', {\n\t\t\t\t\t\tagentCount: Object.keys(agents).length,\n\t\t\t\t\t\tagentNames: Object.keys(agents),\n\t\t\t\t\t})\n\t\t\t\t} else {\n\t\t\t\t\t// Linux/Windows: render agents to .claude/agents/ for auto-discovery\n\t\t\t\t\tconst agentsDir = path.join(context.workspacePath, '.claude', 'agents')\n\t\t\t\t\tconst rendered = await this.agentManager.renderAgentsToDisk(loadedAgents, agentsDir)\n\t\t\t\t\tlogger.debug('Rendered agent files to disk for auto-discovery', {\n\t\t\t\t\t\tagentCount: rendered.length,\n\t\t\t\t\t\tagentNames: rendered,\n\t\t\t\t\t\ttargetDir: agentsDir,\n\t\t\t\t\t})\n\t\t\t\t\t// agents remains undefined - not passed to launchClaude\n\t\t\t\t}\n\t\t\t} catch (error) {\n\t\t\t\t// Log warning but continue without agents\n\t\t\t\tlogger.warn(`Failed to load agents: ${error instanceof Error ? error.message : 'Unknown error'}`)\n\t\t\t}\n\n\t\t\tlogger.debug('Launching Claude in current terminal', {\n\t\t\t\ttype: context.type,\n\t\t\t\tmodel,\n\t\t\t\tpermissionMode,\n\t\t\t\tworkspacePath: context.workspacePath,\n\t\t\t\thasMcpConfig: !!mcpConfig,\n\t\t\t})\n\n\t\t\t// Pre-accept Claude Code trust for this worktree path\n\t\t\ttry {\n\t\t\t\tawait preAcceptClaudeTrust(context.workspacePath)\n\t\t\t} catch (error) {\n\t\t\t\tlogger.warn(`Failed to pre-accept Claude trust: ${error instanceof Error ? error.message : String(error)}`)\n\t\t\t}\n\n\t\t\tlogger.info(isHeadless ? '✨ Launching Claude in headless mode...' : '✨ Launching Claude in current terminal...')\n\n\t\t\t// Prepare system prompt based on platform\n\t\t\tconst systemPromptConfig = await prepareSystemPromptForPlatform(\n\t\t\t\tsystemInstructions,\n\t\t\t\tcontext.workspacePath,\n\t\t\t)\n\n\t\t\t// Determine the initial user prompt (Windows overrides with /clear)\n\t\t\tconst effectiveUserPrompt = systemPromptConfig.initialPromptOverride ?? userPrompt\n\n\t\t\t// Step 5: Launch Claude with system instructions appended and user prompt\n\t\t\tconst claudeResult = await launchClaude(effectiveUserPrompt, {\n\t\t\t\t...claudeOptions,\n\t\t\t\t...(systemPromptConfig.appendSystemPrompt && { appendSystemPrompt: systemPromptConfig.appendSystemPrompt }),\n\t\t\t\t...(systemPromptConfig.pluginDir && { pluginDir: systemPromptConfig.pluginDir }),\n\t\t\t\t...(mcpConfig && { mcpConfig }),\n\t\t\t\t...(allowedTools && { allowedTools }),\n\t\t\t\t...(disallowedTools && { disallowedTools }),\n\t\t\t\t...(agents && { agents }),\n\t\t\t})\n\n\t\t\t// Output final JSON for --json mode (--json-stream already streamed to stdout)\n\t\t\tif (this.printOptions?.json) {\n\t\t\t\t// eslint-disable-next-line no-console\n\t\t\t\tconsole.log(JSON.stringify({\n\t\t\t\t\tsuccess: true,\n\t\t\t\t\toutput: claudeResult ?? ''\n\t\t\t\t}))\n\t\t\t}\n\n\t\t\t// Step 6: Mark as run after successful launch\n\t\t\tif (isFirstRun) {\n\t\t\t\tawait this.firstRunManager.markAsRun()\n\t\t\t}\n\t\t} catch (error) {\n\t\t\tconst errorMessage = error instanceof Error ? error.message : 'Unknown error'\n\t\t\t// Output error as JSON for --json mode\n\t\t\tif (this.printOptions?.json) {\n\t\t\t\t// eslint-disable-next-line no-console\n\t\t\t\tconsole.log(JSON.stringify({\n\t\t\t\t\tsuccess: false,\n\t\t\t\t\terror: errorMessage\n\t\t\t\t}))\n\t\t\t}\n\t\t\tthrow error\n\t\t}\n\t}\n\n\t/**\n\t * Log user-friendly information about detected context\n\t */\n\tprivate logDetectedContext(context: ClaudeWorkflowOptions): void {\n\t\tif (context.type === 'issue') {\n\t\t\tlogger.info(`🎯 Detected issue workflow: Issue #${context.issueNumber}`)\n\t\t} else if (context.type === 'pr') {\n\t\t\tlogger.info(`🔄 Detected PR workflow: PR #${context.prNumber}`)\n\t\t} else {\n\t\t\tlogger.info('🌟 Detected regular workflow')\n\t\t}\n\n\t\tif (context.branchName) {\n\t\t\tlogger.info(`🌿 Working on branch: ${context.branchName}`)\n\t\t}\n\n\t\tif (context.port) {\n\t\t\tlogger.info(`🌐 Development server port: ${context.port}`)\n\t\t}\n\t}\n\n\t/**\n\t * Build template variables from context\n\t */\n\tprivate buildTemplateVariables(\n\t\tcontext: ClaudeWorkflowOptions,\n\t\toneShot: OneShotMode,\n\t\tdraftPrNumber?: number,\n\t\tdraftPrUrl?: string,\n\t\tcomplexity?: ComplexityOverride\n\t): TemplateVariables {\n\t\tconst variables: TemplateVariables = {\n\t\t\tWORKSPACE_PATH: context.workspacePath,\n\t\t}\n\n\t\tif (context.issueNumber !== undefined) {\n\t\t\tvariables.ISSUE_NUMBER = context.issueNumber\n\t\t}\n\n\t\tif (context.prNumber !== undefined) {\n\t\t\tvariables.PR_NUMBER = context.prNumber\n\t\t}\n\n\t\tif (context.title !== undefined) {\n\t\t\tif (context.type === 'issue') {\n\t\t\t\tvariables.ISSUE_TITLE = context.title\n\t\t\t} else if (context.type === 'pr') {\n\t\t\t\tvariables.PR_TITLE = context.title\n\t\t\t}\n\t\t}\n\n\t\tif (context.port !== undefined) {\n\t\t\tvariables.PORT = context.port\n\t\t}\n\n\t\t// Set ONE_SHOT_MODE or INTERACTIVE_MODE flag for template conditional sections\n\t\tif (oneShot === 'noReview' || oneShot === 'bypassPermissions') {\n\t\t\tvariables.ONE_SHOT_MODE = true\n\t\t} else {\n\t\t\tvariables.INTERACTIVE_MODE = true\n\t\t}\n\n\t\t// Set review configuration variables (code reviewer + artifact reviewer + per-agent flags)\n\t\tObject.assign(variables, buildReviewTemplateVariables(false, this.settings?.agents))\n\n\t\t// Set complexity override if provided (CLI flag or loom metadata)\n\t\tif (complexity) {\n\t\t\tvariables.COMPLEXITY_OVERRIDE = complexity\n\t\t}\n\n\t\t// Set draft PR mode flags (mutually exclusive)\n\t\t// When draftPrNumber is set, we're in github-draft-pr mode\n\t\tif (draftPrNumber !== undefined) {\n\t\t\tvariables.DRAFT_PR_MODE = true\n\t\t\tvariables.DRAFT_PR_NUMBER = draftPrNumber\n\t\t\tif (draftPrUrl) {\n\t\t\t\tvariables.DRAFT_PR_URL = draftPrUrl\n\t\t\t}\n\t\t\t// Set AUTO_COMMIT_PUSH when in draft PR mode and not explicitly disabled\n\t\t\t// Default is true (enabled) for draft PR mode\n\t\t\tconst autoCommitPushEnabled = this.settings?.mergeBehavior?.autoCommitPush !== false\n\t\t\tvariables.AUTO_COMMIT_PUSH = autoCommitPushEnabled\n\t\t\t// Set GIT_REMOTE from settings or default to 'origin'\n\t\t\tconst remote = this.settings?.mergeBehavior?.remote ?? 'origin'\n\t\t\tif (!/^[a-zA-Z0-9_-]+$/.test(remote)) {\n\t\t\t\tthrow new Error(`Invalid git remote name: \"${remote}\". Remote names can only contain alphanumeric characters, underscores, and hyphens.`)\n\t\t\t}\n\t\t\tvariables.GIT_REMOTE = remote\n\t\t} else if (context.type === 'regular') {\n\t\t\t// Branch mode without draft PR\n\t\t\tvariables.STANDARD_BRANCH_MODE = true\n\t\t} else {\n\t\t\t// Issue/PR mode without draft PR\n\t\t\tvariables.STANDARD_ISSUE_MODE = true\n\t\t}\n\n\t\t// Detect VS Code mode\n\t\tconst isVscodeMode = process.env.ILOOM_VSCODE === '1'\n\t\tvariables.IS_VSCODE_MODE = isVscodeMode\n\n\t\treturn variables\n\t}\n\n\t/**\n\t * Get the appropriate permission mode for a workflow type\n\t * Same logic as ClaudeService.getPermissionModeForWorkflow()\n\t */\n\tprivate getPermissionModeForWorkflow(\n\t\ttype: 'issue' | 'pr' | 'regular'\n\t): ClaudeCliOptions['permissionMode'] {\n\t\t// Check settings for configured permission mode\n\t\tif (this.settings?.workflows) {\n\t\t\tconst workflowConfig =\n\t\t\t\ttype === 'issue'\n\t\t\t\t\t? this.settings.workflows.issue\n\t\t\t\t\t: type === 'pr'\n\t\t\t\t\t\t? this.settings.workflows.pr\n\t\t\t\t\t\t: this.settings.workflows.regular\n\n\t\t\tif (workflowConfig?.permissionMode) {\n\t\t\t\treturn workflowConfig.permissionMode\n\t\t\t}\n\t\t}\n\n\t\t// Fall back to current defaults\n\t\tif (type === 'issue') {\n\t\t\treturn 'acceptEdits'\n\t\t}\n\t\t// For PR and regular workflows, use default permissions\n\t\treturn 'default'\n\t}\n\n\t/**\n\t * Auto-detect workspace context from current directory and git branch\n\t *\n\t * Detection priority:\n\t * 1. Directory name patterns (_pr_N, issue-N)\n\t * 2. Git branch name patterns\n\t * 3. Fallback to 'regular' workflow\n\t *\n\t * This leverages the same logic as FinishCommand.autoDetectFromCurrentDirectory()\n\t */\n\tprivate async detectWorkspaceContext(workspacePath?: string): Promise<ClaudeWorkflowOptions> {\n\t\tconst workspacePath_ = workspacePath ?? process.cwd()\n\t\tconst currentDir = path.basename(workspacePath_)\n\n\t\t// Check for PR worktree pattern: _pr_N suffix\n\t\t// Pattern: /.*_pr_(\\d+)$/\n\t\tconst prPattern = /_pr_(\\d+)$/\n\t\tconst prMatch = currentDir.match(prPattern)\n\n\t\tif (prMatch?.[1]) {\n\t\t\tconst prNumber = parseInt(prMatch[1], 10)\n\t\t\tlogger.debug(`Auto-detected PR #${prNumber} from directory: ${currentDir}`)\n\n\t\t\treturn this.buildContextForPR(prNumber, workspacePath_)\n\t\t}\n\n\t\t// Check for issue pattern in directory name\n\t\tconst issueNumber = extractIssueNumber(currentDir)\n\n\t\tif (issueNumber !== null) {\n\t\t\tlogger.debug(`Auto-detected issue #${issueNumber} from directory: ${currentDir}`)\n\n\t\t\treturn this.buildContextForIssue(issueNumber, workspacePath_)\n\t\t}\n\n\t\t// Fallback: Try to extract from git branch name\n\t\ttry {\n\t\t\tconst repoInfo = await this.gitWorktreeManager.getRepoInfo()\n\t\t\tconst currentBranch = repoInfo.currentBranch\n\n\t\t\tif (currentBranch) {\n\t\t\t\t// Try to extract issue from branch name\n\t\t\t\tconst branchIssueNumber = extractIssueNumber(currentBranch)\n\t\t\t\tif (branchIssueNumber !== null) {\n\t\t\t\t\tlogger.debug(`Auto-detected issue #${branchIssueNumber} from branch: ${currentBranch}`)\n\n\t\t\t\t\treturn this.buildContextForIssue(branchIssueNumber, workspacePath_, currentBranch)\n\t\t\t\t}\n\t\t\t}\n\t\t} catch (error) {\n\t\t\t// Git command failed - not a git repo or other git error\n\t\t\tlogger.debug('Could not detect from git branch', { error })\n\t\t}\n\n\t\t// Last resort: use regular workflow\n\t\tlogger.debug('No specific context detected, using regular workflow')\n\t\treturn this.buildContextForRegular(workspacePath_)\n\t}\n\n\t/**\n\t * Build context for issue workflow\n\t */\n\tprivate async buildContextForIssue(\n\t\tissueNumber: string | number,\n\t\tworkspacePath: string,\n\t\tbranchName?: string\n\t): Promise<ClaudeWorkflowOptions> {\n\t\t// Get branch name if not provided\n\t\tif (!branchName) {\n\t\t\ttry {\n\t\t\t\tconst repoInfo = await this.gitWorktreeManager.getRepoInfo()\n\t\t\t\tbranchName = repoInfo.currentBranch ?? undefined\n\t\t\t} catch {\n\t\t\t\t// Ignore git errors\n\t\t\t}\n\t\t}\n\n\t\tconst context: ClaudeWorkflowOptions = {\n\t\t\ttype: 'issue',\n\t\t\tissueNumber,\n\t\t\tworkspacePath,\n\t\t\theadless: false, // Interactive mode\n\t\t}\n\n\t\tif (branchName !== undefined) {\n\t\t\tcontext.branchName = branchName\n\t\t}\n\n\t\treturn context\n\t}\n\n\t/**\n\t * Build context for PR workflow\n\t */\n\tprivate async buildContextForPR(\n\t\tprNumber: number,\n\t\tworkspacePath: string\n\t): Promise<ClaudeWorkflowOptions> {\n\t\t// Get branch name\n\t\tlet branchName: string | undefined\n\t\ttry {\n\t\t\tconst repoInfo = await this.gitWorktreeManager.getRepoInfo()\n\t\t\tbranchName = repoInfo.currentBranch ?? undefined\n\t\t} catch {\n\t\t\t// Ignore git errors\n\t\t}\n\n\t\tconst context: ClaudeWorkflowOptions = {\n\t\t\ttype: 'pr',\n\t\t\tprNumber,\n\t\t\tworkspacePath,\n\t\t\theadless: false, // Interactive mode\n\t\t}\n\n\t\tif (branchName !== undefined) {\n\t\t\tcontext.branchName = branchName\n\t\t}\n\n\t\treturn context\n\t}\n\n\t/**\n\t * Build context for regular workflow\n\t */\n\tprivate async buildContextForRegular(workspacePath: string): Promise<ClaudeWorkflowOptions> {\n\t\t// Get branch name\n\t\tlet branchName: string | undefined\n\t\ttry {\n\t\t\tconst repoInfo = await this.gitWorktreeManager.getRepoInfo()\n\t\t\tbranchName = repoInfo.currentBranch ?? undefined\n\t\t} catch {\n\t\t\t// Ignore git errors\n\t\t}\n\n\t\tconst context: ClaudeWorkflowOptions = {\n\t\t\ttype: 'regular',\n\t\t\tworkspacePath,\n\t\t\theadless: false, // Interactive mode\n\t\t}\n\n\t\tif (branchName !== undefined) {\n\t\t\tcontext.branchName = branchName\n\t\t}\n\n\t\treturn context\n\t}\n\n\n\t/**\n\t * Fetch and store epic child issue data and dependency map in metadata\n\t *\n\t * Called during spin setup for epic looms. Fetches child issue details\n\t * and dependency relationships from the issue tracker, then persists\n\t * them in the loom metadata for use by the orchestrator.\n\t */\n\tprivate async fetchAndStoreEpicChildData(\n\t\tmetadataManager: MetadataManager,\n\t\tmetadata: import('../lib/MetadataManager.js').LoomMetadata,\n\t\tworktreePath: string,\n\t\tsettings: import('../lib/SettingsManager.js').IloomSettings,\n\t): Promise<void> {\n\t\tconst parentIssueNumber = metadata.issue_numbers[0]\n\t\tif (!parentIssueNumber) return\n\n\t\tlogger.info('Fetching child issue data for epic...')\n\n\t\ttry {\n\t\t\tconst issueTracker = IssueTrackerFactory.create(settings)\n\n\t\t\t// Fetch child issue details and build dependency map in parallel\n\t\t\tconst childIssueDetails = await fetchChildIssueDetails(\n\t\t\t\tparentIssueNumber, issueTracker\n\t\t\t)\n\n\t\t\tif (childIssueDetails.length === 0) {\n\t\t\t\tlogger.debug('No child issues found for epic')\n\t\t\t\treturn\n\t\t\t}\n\n\t\t\t// Extract raw IDs for dependency map building (strip prefixes)\n\t\t\tconst childIds = childIssueDetails.map((child) => child.number.replace(/^#/, ''))\n\n\t\t\tconst dependencyMap = await buildDependencyMap(childIds, settings)\n\n\t\t\t// Persist to metadata\n\t\t\tawait metadataManager.updateMetadata(worktreePath, {\n\t\t\t\tchildIssues: childIssueDetails,\n\t\t\t\tdependencyMap,\n\t\t\t})\n\n\t\t\tlogger.info(`Stored ${childIssueDetails.length} child issues and dependency map in metadata`)\n\t\t} catch (error) {\n\t\t\t// Non-fatal: epic can still spin without child data\n\t\t\tlogger.warn(`Failed to fetch epic child data: ${error instanceof Error ? error.message : String(error)}`)\n\t\t}\n\t}\n\n\t/**\n\t * Execute swarm mode for an epic loom.\n\t *\n\t * Creates child worktrees, renders swarm agents/skill, builds the\n\t * orchestrator prompt, and launches Claude with agent teams enabled.\n\t */\n\tprivate async executeSwarmMode(\n\t\tmetadata: LoomMetadata,\n\t\tepicWorktreePath: string,\n\t\tepicBranch: string,\n\t\tmetadataManager: MetadataManager,\n\t\tskipCleanup?: boolean,\n\t): Promise<void> {\n\t\tif (!this.settings) {\n\t\t\tthrow new Error('Settings not loaded. Cannot enter swarm mode.')\n\t\t}\n\t\tconst settings = this.settings\n\t\tconst epicIssueNumber = metadata.issue_numbers[0]\n\t\tif (!epicIssueNumber) {\n\t\t\tthrow new Error('Epic loom has no issue number in metadata')\n\t\t}\n\n\t\tlogger.info('Epic loom detected - entering swarm mode...')\n\n\t\t// Determine main worktree path and issue tracker provider\n\t\tconst mainWorktreePath = await findMainWorktreePathWithSettings()\n\t\tconst providerName = IssueTrackerFactory.getProviderName(settings)\n\n\t\t// Create SwarmSetupService\n\t\tconst swarmSetup = new SwarmSetupService(\n\t\t\tthis.gitWorktreeManager,\n\t\t\tmetadataManager,\n\t\t\tthis.agentManager,\n\t\t\tthis.settingsManager,\n\t\t\tthis.templateManager,\n\t\t)\n\n\t\t// Generate and write per-loom MCP config file for the epic worktree\n\t\ttry {\n\t\t\tconst epicMcpConfigPath = await generateAndWriteMcpConfigFile(\n\t\t\t\tepicWorktreePath,\n\t\t\t\tmetadata,\n\t\t\t\tproviderName as 'github' | 'linear' | 'jira',\n\t\t\t\tsettings,\n\t\t\t)\n\t\t\tawait metadataManager.updateMetadata(epicWorktreePath, { mcpConfigPath: epicMcpConfigPath })\n\n\t\t\t// Write MCP config path to .claude/iloom-swarm-mcp-config-path for worker discovery\n\t\t\tconst epicClaudeDir = path.join(epicWorktreePath, '.claude')\n\t\t\tawait fs.ensureDir(epicClaudeDir)\n\t\t\tawait fs.writeFile(\n\t\t\t\tpath.join(epicClaudeDir, 'iloom-swarm-mcp-config-path'),\n\t\t\t\tepicMcpConfigPath,\n\t\t\t\t'utf-8',\n\t\t\t)\n\n\t\t\tlogger.debug('Wrote MCP config for epic loom', { epicMcpConfigPath })\n\t\t} catch (error) {\n\t\t\tlogger.warn(`Failed to write MCP config for epic loom: ${error instanceof Error ? error.message : 'Unknown error'}`)\n\t\t}\n\n\t\t// Build MCP configs for the orchestrator's own launchClaude call\n\t\tconst mcpConfigs: Record<string, unknown>[] = []\n\n\t\t// Issue management MCP\n\t\ttry {\n\t\t\tconst issueMcpConfigs = await generateIssueManagementMcpConfig(\n\t\t\t\t'issue',\n\t\t\t\tundefined,\n\t\t\t\tproviderName as 'github' | 'linear' | 'jira',\n\t\t\t\tsettings,\n\t\t\t)\n\t\t\tmcpConfigs.push(...issueMcpConfigs)\n\t\t} catch (error) {\n\t\t\tlogger.warn(`Failed to generate issue management MCP config: ${error instanceof Error ? error.message : 'Unknown error'}`)\n\t\t}\n\n\t\t// Recap MCP for the epic loom\n\t\ttry {\n\t\t\tconst recapMcpConfigs = generateRecapMcpConfig(epicWorktreePath, metadata)\n\t\t\tmcpConfigs.push(...recapMcpConfigs)\n\t\t} catch (error) {\n\t\t\tlogger.warn(`Failed to generate recap MCP config: ${error instanceof Error ? error.message : 'Unknown error'}`)\n\t\t}\n\n\t\t// Filter out children that are already done (finished looms may have metadata\n\t\t// in the \"looms/finished\" directory, not just in active worktree metadata)\n\t\tconst finishedMetadata = await metadataManager.listFinishedMetadata()\n\t\tconst finishedByIssueNumber = new Map<string, LoomMetadata>()\n\t\tfor (const meta of finishedMetadata) {\n\t\t\tfor (const issueNum of meta.issue_numbers) {\n\t\t\t\t// listFinishedMetadata returns newest first; preserve the newest entry\n\t\t\t\tif (!finishedByIssueNumber.has(issueNum)) {\n\t\t\t\t\tfinishedByIssueNumber.set(issueNum, meta)\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\n\t\tconst pendingChildIssues: typeof metadata.childIssues = []\n\t\tconst skippedChildren: Array<{ number: string; state: string }> = []\n\n\t\tfor (const child of metadata.childIssues) {\n\t\t\tconst rawId = child.number.replace(/^#/, '')\n\t\t\tconst safeId = rawId.replace(/[^a-zA-Z0-9-_]/g, '-')\n\t\t\tconst childBranch = `issue/${safeId}`\n\t\t\tconst childWorktreePath = generateWorktreePath(childBranch, mainWorktreePath)\n\n\t\t\t// Check active worktree metadata first, then fall back to finished metadata\n\t\t\tconst childMeta = await metadataManager.readMetadata(childWorktreePath)\n\t\t\t\t?? finishedByIssueNumber.get(rawId) ?? null\n\n\t\t\tif (childMeta?.state === 'done') {\n\t\t\t\tskippedChildren.push({ number: child.number, state: childMeta.state })\n\t\t\t} else {\n\t\t\t\tpendingChildIssues.push(child)\n\t\t\t}\n\t\t}\n\n\t\tif (skippedChildren.length > 0) {\n\t\t\tfor (const skipped of skippedChildren) {\n\t\t\t\tlogger.info(`Skipping child ${skipped.number} (state: ${skipped.state})`)\n\t\t\t}\n\t\t}\n\n\t\t// Run swarm setup for any pending child issues (may be empty if all are done)\n\t\tconst swarmResult = await swarmSetup.setupSwarm(\n\t\t\tepicIssueNumber,\n\t\t\tepicBranch,\n\t\t\tepicWorktreePath,\n\t\t\tpendingChildIssues,\n\t\t\tmainWorktreePath,\n\t\t\tproviderName,\n\t\t\tsettings,\n\t\t)\n\n\t\t// Build template variables for orchestrator prompt\n\t\tconst successfulWorktrees = swarmResult.childWorktrees.filter((c) => c.success)\n\t\tconst worktreeMap = new Map(successfulWorktrees.map((cw) => [cw.issueId, cw]))\n\n\t\tconst childIssuesData = pendingChildIssues\n\t\t\t.filter((ci) => worktreeMap.has(ci.number.replace(/^#/, '')))\n\t\t\t.map((ci) => {\n\t\t\t\tconst rawId = ci.number.replace(/^#/, '')\n\t\t\t\tconst wt = worktreeMap.get(rawId)\n\t\t\t\treturn {\n\t\t\t\t\tnumber: rawId,\n\t\t\t\t\ttitle: ci.title,\n\t\t\t\t\tbody: ci.body,\n\t\t\t\t\tworktreePath: wt?.worktreePath ?? '',\n\t\t\t\t\tbranchName: wt?.branch ?? '',\n\t\t\t\t}\n\t\t\t})\n\n\t\t// Get metadata file path for the orchestrator prompt template\n\t\tconst epicMetadataPath = metadataManager.getMetadataFilePath(epicWorktreePath)\n\n\t\t// Determine issue prefix for commit message trailers\n\t\tconst issuePrefix = providerName === 'github' ? '#' : ''\n\n\t\t// Post-swarm review defaults to true (matches SpinAgentSettingsSchema default)\n\t\tconst postSwarmReview = settings.spin?.postSwarmReview !== false\n\n\t\tconst variables: TemplateVariables = {\n\t\t\tEPIC_ISSUE_NUMBER: epicIssueNumber,\n\t\t\tEPIC_WORKTREE_PATH: epicWorktreePath,\n\t\t\tEPIC_METADATA_PATH: epicMetadataPath,\n\t\t\tCHILD_ISSUES: JSON.stringify(childIssuesData, null, 2),\n\t\t\tDEPENDENCY_MAP: JSON.stringify(metadata.dependencyMap, null, 2),\n\t\t\tISSUE_PREFIX: issuePrefix,\n\t\t\t...(skipCleanup && { NO_CLEANUP: true }),\n\t\t\t...(postSwarmReview && { POST_SWARM_REVIEW: true }),\n\t\t}\n\n\t\t// Set draft PR mode flags for swarm orchestrator (same logic as buildTemplateVariables)\n\t\tconst draftPrNumber = metadata.draftPrNumber ?? undefined\n\t\tif (draftPrNumber !== undefined) {\n\t\t\tvariables.DRAFT_PR_MODE = true\n\t\t\tvariables.DRAFT_PR_NUMBER = draftPrNumber\n\t\t\tconst draftPrUrl = metadata.prUrls?.[String(draftPrNumber)]\n\t\t\tif (draftPrUrl) {\n\t\t\t\tvariables.DRAFT_PR_URL = draftPrUrl\n\t\t\t}\n\t\t\tconst autoCommitPushEnabled = settings.mergeBehavior?.autoCommitPush !== false\n\t\t\tvariables.AUTO_COMMIT_PUSH = autoCommitPushEnabled\n\t\t\tconst remote = settings.mergeBehavior?.remote ?? 'origin'\n\t\t\tif (!/^[a-zA-Z0-9_-]+$/.test(remote)) {\n\t\t\t\tthrow new Error(`Invalid git remote name: \"${remote}\". Remote names can only contain alphanumeric characters, underscores, and hyphens.`)\n\t\t\t}\n\t\t\tvariables.GIT_REMOTE = remote\n\t\t}\n\n\t\tconst orchestratorPrompt = await this.templateManager.getPrompt('swarm-orchestrator', variables)\n\n\t\t// Build allowed tools\n\t\tconst allowedTools = [\n\t\t\t'mcp__issue_management__get_issue',\n\t\t\t'mcp__issue_management__get_comment',\n\t\t\t'mcp__issue_management__create_comment',\n\t\t\t'mcp__issue_management__update_comment',\n\t\t\t'mcp__issue_management__create_issue',\n\t\t\t'mcp__issue_management__close_issue',\n\t\t\t'mcp__issue_management__reopen_issue',\n\t\t\t'mcp__issue_management__edit_issue',\n\t\t\t'mcp__recap__add_entry',\n\t\t\t'mcp__recap__get_recap',\n\t\t\t'mcp__recap__add_artifact',\n\t\t\t'mcp__recap__set_complexity',\n\t\t\t'mcp__recap__set_loom_state',\n\t\t\t'mcp__recap__get_loom_state',\n\t\t]\n\n\t\t// Launch Claude with agent teams enabled\n\t\tconst model = this.settingsManager.getSpinModel(settings, 'swarm')\n\n\t\tlogger.info('Launching swarm orchestrator...')\n\t\tlogger.info(` Model: ${model ?? 'default'}`)\n\t\tlogger.info(` Permission mode: bypassPermissions`)\n\t\tlogger.info(` Agent teams: enabled`)\n\t\tlogger.info(` Child worktrees: ${successfulWorktrees.length}`)\n\n\t\t// Load agents for the orchestrator\n\t\tlet agents: Record<string, unknown> | undefined\n\t\ttry {\n\t\t\tconst loadedAgents = await this.agentManager.loadAgents(\n\t\t\t\tsettings,\n\t\t\t\tvariables,\n\t\t\t\t['*.md', '!iloom-framework-detector.md']\n\t\t\t)\n\n\t\t\tif (process.platform === 'darwin') {\n\t\t\t\tagents = this.agentManager.formatForCli(loadedAgents)\n\t\t\t} else {\n\t\t\t\tconst agentsDir = path.join(epicWorktreePath, '.claude', 'agents')\n\t\t\t\tawait this.agentManager.renderAgentsToDisk(loadedAgents, agentsDir)\n\t\t\t}\n\t\t} catch (error) {\n\t\t\tlogger.warn(`Failed to load agents: ${error instanceof Error ? error.message : 'Unknown error'}`)\n\t\t}\n\n\t\t// Track swarm.started before launching orchestrator\n\t\tconst swarmStartTime = Date.now()\n\t\ttry {\n\t\t\tTelemetryService.getInstance().track('swarm.started', {\n\t\t\t\tchild_count: successfulWorktrees.length,\n\t\t\t\ttracker: providerName,\n\t\t\t})\n\t\t} catch (error) {\n\t\t\tlogger.debug(`Telemetry swarm.started tracking failed: ${error instanceof Error ? error.message : error}`)\n\t\t}\n\n\t\t// Prepare orchestrator prompt based on platform\n\t\tconst orchestratorPromptConfig = await prepareSystemPromptForPlatform(\n\t\t\torchestratorPrompt,\n\t\t\tepicWorktreePath,\n\t\t)\n\n\t\tconst effectiveSwarmPrompt = orchestratorPromptConfig.initialPromptOverride\n\t\t\t?? `You are the swarm orchestrator for epic #${epicIssueNumber}. Begin by reading your system prompt instructions and executing the workflow.`\n\n\t\t// Set env vars directly on process.env so they propagate to Claude Code\n\t\t// and its child processes (execa's env option doesn't reliably pass them)\n\t\tprocess.env.CLAUDE_CODE_EXPERIMENTAL_AGENT_TEAMS = '1'\n\t\tprocess.env.ILOOM_SWARM = '1'\n\t\tprocess.env.ENABLE_TOOL_SEARCH = 'auto:30'\n\t\tprocess.env.CLAUDE_CODE_DISABLE_FILE_CHECKPOINTING = '1'\n\t\tprocess.env.CLAUDE_CODE_DISABLE_AUTO_MEMORY = '1'\n\t\tprocess.env.CLAUDE_CODE_DISABLE_NONESSENTIAL_TRAFFIC = '1'\n\t\tprocess.env.CLAUDE_CODE_EFFORT_LEVEL = 'medium'\n\n\t\tawait launchClaude(effectiveSwarmPrompt, {\n\t\t\tmodel,\n\t\t\tpermissionMode: 'bypassPermissions',\n\t\t\taddDir: epicWorktreePath,\n\t\t\theadless: false,\n\t\t\t...(metadata.sessionId && { sessionId: metadata.sessionId }),\n\t\t\t...(orchestratorPromptConfig.appendSystemPrompt && { appendSystemPrompt: orchestratorPromptConfig.appendSystemPrompt }),\n\t\t\t...(orchestratorPromptConfig.pluginDir && { pluginDir: orchestratorPromptConfig.pluginDir }),\n\t\t\tmcpConfig: mcpConfigs,\n\t\t\tallowedTools,\n\t\t\t...(agents && { agents }),\n\t\t})\n\n\t\t// Track swarm child completions and overall completion\n\t\ttry {\n\t\t\tconst swarmEndTime = Date.now()\n\t\t\tlet succeeded = 0\n\t\t\tlet failed = 0\n\n\t\t\tfor (const child of successfulWorktrees) {\n\t\t\t\tconst childMeta = await metadataManager.readMetadata(child.worktreePath)\n\t\t\t\tconst isSuccess = childMeta?.state === 'done'\n\t\t\t\tif (isSuccess) {\n\t\t\t\t\tsucceeded++\n\t\t\t\t} else {\n\t\t\t\t\tfailed++\n\t\t\t\t}\n\n\t\t\t\tconst parsed = childMeta?.created_at ? Date.parse(childMeta.created_at) : NaN\n\t\t\t\tconst childCreatedAt = Number.isNaN(parsed) ? swarmStartTime : parsed\n\t\t\t\tconst childDuration = Math.max(0, Math.round((swarmEndTime - childCreatedAt) / 60000))\n\n\t\t\t\tTelemetryService.getInstance().track('swarm.child_completed', {\n\t\t\t\t\tsuccess: isSuccess,\n\t\t\t\t\tduration_minutes: childDuration,\n\t\t\t\t})\n\t\t\t}\n\n\t\t\tTelemetryService.getInstance().track('swarm.completed', {\n\t\t\t\ttotal_children: successfulWorktrees.length,\n\t\t\t\tsucceeded,\n\t\t\t\tfailed,\n\t\t\t\tduration_minutes: Math.round((swarmEndTime - swarmStartTime) / 60000),\n\t\t\t})\n\t\t} catch (error) {\n\t\t\tlogger.debug(`Telemetry swarm completion tracking failed: ${error instanceof Error ? error.message : error}`)\n\t\t}\n\t}\n\n\t/**\n\t * Build user prompt based on one-shot mode\n\t */\n\tprivate buildUserPrompt(oneShot: OneShotMode = 'default'): string {\n\t\t// For one-shot modes, add bypass instructions to override template approval requirements\n\t\tif (oneShot === 'noReview' || oneShot === 'bypassPermissions') {\n\t\t\treturn 'Guide the user through the iloom workflow! The user has requested you move through the workflow without awaiting confirmation. This supersedes any other guidance.'\n\t\t}\n\n\t\t// Default mode: simple \"Go!\" prompt\n\t\treturn 'Guide the user through the iloom workflow!'\n\t}\n\n\t/**\n\t * Load README.md content for first-time users\n\t * Walks up from dist directory to find README.md in project root\n\t */\n\tprivate async loadReadmeContent(): Promise<string> {\n\t\ttry {\n\t\t\t// Walk up from current file location to find README.md\n\t\t\t// Use same pattern as PromptTemplateManager for finding files\n\t\t\tlet currentDir = path.dirname(new URL(import.meta.url).pathname)\n\n\t\t\t// Walk up to find README.md\n\t\t\twhile (currentDir !== path.dirname(currentDir)) {\n\t\t\t\tconst readmePath = path.join(currentDir, 'README.md')\n\t\t\t\ttry {\n\t\t\t\t\tconst content = await readFile(readmePath, 'utf-8')\n\t\t\t\t\tlogger.debug('Loaded README.md for first-time user', { readmePath })\n\t\t\t\t\treturn content\n\t\t\t\t} catch {\n\t\t\t\t\tcurrentDir = path.dirname(currentDir)\n\t\t\t\t}\n\t\t\t}\n\n\t\t\tlogger.debug('README.md not found, returning empty string')\n\t\t\treturn ''\n\t\t} catch (error) {\n\t\t\t// Graceful degradation - return empty string on error\n\t\t\tlogger.debug(`Failed to load README.md: ${error}`)\n\t\t\treturn ''\n\t\t}\n\t}\n\n\t/**\n\t * Load settings schema content for first-time users\n\t * Walks up from dist directory to find .iloom/README.md\n\t */\n\tprivate async loadSettingsSchemaContent(): Promise<string> {\n\t\ttry {\n\t\t\t// Walk up from current file location to find .iloom/README.md\n\t\t\tlet currentDir = path.dirname(new URL(import.meta.url).pathname)\n\n\t\t\t// Walk up to find .iloom/README.md\n\t\t\twhile (currentDir !== path.dirname(currentDir)) {\n\t\t\t\tconst schemaPath = path.join(currentDir, '.iloom', 'README.md')\n\t\t\t\ttry {\n\t\t\t\t\tconst content = await readFile(schemaPath, 'utf-8')\n\t\t\t\t\tlogger.debug('Loaded .iloom/README.md for first-time user', { schemaPath })\n\t\t\t\t\treturn content\n\t\t\t\t} catch {\n\t\t\t\t\tcurrentDir = path.dirname(currentDir)\n\t\t\t\t}\n\t\t\t}\n\n\t\t\tlogger.debug('.iloom/README.md not found, returning empty string')\n\t\t\treturn ''\n\t\t} catch (error) {\n\t\t\t// Graceful degradation - return empty string on error\n\t\t\tlogger.debug(`Failed to load .iloom/README.md: ${error}`)\n\t\t\treturn ''\n\t\t}\n\t}\n}\n","import os from 'os'\nimport path from 'path'\nimport fs from 'fs-extra'\nimport { parse, modify, applyEdits, ParseError } from 'jsonc-parser'\nimport { fileURLToPath } from 'url'\nimport { accessSync } from 'fs'\nimport { logger } from '../utils/logger.js'\n\n/**\n * Hook configuration for a single event\n */\ninterface HookEntry {\n\ttype: 'command'\n\tcommand: string\n\ttimeout?: number\n}\n\n/**\n * Hook event configuration\n */\ninterface HookEventConfig {\n\tmatcher?: string\n\thooks: HookEntry[]\n}\n\n/**\n * Claude settings.json structure (partial)\n */\ninterface ClaudeSettings {\n\thooks?: Record<string, HookEventConfig[]>\n\t[key: string]: unknown\n}\n\n/**\n * Manages installation of Claude Code hooks to ~/.claude/\n *\n * Hooks enable real-time monitoring of Claude session state\n * via Unix socket communication with the iloom-vscode extension.\n */\nexport class ClaudeHookManager {\n\tprivate claudeDir: string\n\tprivate hooksDir: string\n\tprivate settingsPath: string\n\tprivate templateDir: string\n\n\tconstructor() {\n\t\t// Initialize paths using os.homedir()\n\t\tthis.claudeDir = path.join(os.homedir(), '.claude')\n\t\tthis.hooksDir = path.join(this.claudeDir, 'hooks')\n\t\tthis.settingsPath = path.join(this.claudeDir, 'settings.json')\n\n\t\t// Find templates relative to the package installation\n\t\t// Same pattern as PromptTemplateManager\n\t\tconst currentFileUrl = import.meta.url\n\t\tconst currentFilePath = fileURLToPath(currentFileUrl)\n\t\tconst distDir = path.dirname(currentFilePath)\n\n\t\t// Walk up to find the hooks template directory\n\t\tlet templateDir = path.join(distDir, 'hooks')\n\t\tlet currentDir = distDir\n\n\t\twhile (currentDir !== path.dirname(currentDir)) {\n\t\t\tconst candidatePath = path.join(currentDir, 'hooks')\n\t\t\ttry {\n\t\t\t\taccessSync(candidatePath)\n\t\t\t\ttemplateDir = candidatePath\n\t\t\t\tbreak\n\t\t\t} catch {\n\t\t\t\tcurrentDir = path.dirname(currentDir)\n\t\t\t}\n\t\t}\n\n\t\tthis.templateDir = templateDir\n\t\tlogger.debug('ClaudeHookManager initialized', {\n\t\t\tclaudeDir: this.claudeDir,\n\t\t\thooksDir: this.hooksDir,\n\t\t\tsettingsPath: this.settingsPath,\n\t\t\ttemplateDir: this.templateDir\n\t\t})\n\t}\n\n\t/**\n\t * Install Claude hooks for VSCode integration\n\t *\n\t * This is idempotent - safe to call on every spin.\n\t * Installs hook script to ~/.claude/hooks/ and merges\n\t * hook configuration into ~/.claude/settings.json\n\t */\n\tasync installHooks(): Promise<void> {\n\t\ttry {\n\t\t\t// 1. Create ~/.claude/hooks if missing\n\t\t\tawait fs.ensureDir(this.hooksDir)\n\n\t\t\t// 2. Install hook script from bundled templates\n\t\t\tawait this.installHookScript()\n\n\t\t\t// 3. Merge hook config into settings.json\n\t\t\tawait this.mergeHookConfig()\n\n\t\t\tlogger.debug('Claude hooks installed successfully')\n\t\t} catch (error) {\n\t\t\t// Log warning but don't fail - hooks are optional enhancement\n\t\t\tlogger.warn(\n\t\t\t\t`Failed to install Claude hooks: ${error instanceof Error ? error.message : 'Unknown error'}`\n\t\t\t)\n\t\t}\n\t}\n\n\t/**\n\t * Check if hooks are already installed\n\t */\n\tasync isHooksInstalled(): Promise<boolean> {\n\t\ttry {\n\t\t\t// Check if hook script exists\n\t\t\tconst hookScriptPath = path.join(this.hooksDir, 'iloom-hook.js')\n\t\t\tif (!(await fs.pathExists(hookScriptPath))) {\n\t\t\t\treturn false\n\t\t\t}\n\n\t\t\t// Check if settings.json has our hooks\n\t\t\tif (!(await fs.pathExists(this.settingsPath))) {\n\t\t\t\treturn false\n\t\t\t}\n\n\t\t\tconst content = await fs.readFile(this.settingsPath, 'utf8')\n\t\t\tconst errors: ParseError[] = []\n\t\t\tconst settings = parse(content, errors, { allowTrailingComma: true }) as ClaudeSettings\n\n\t\t\tif (errors.length > 0 || !settings?.hooks) {\n\t\t\t\treturn false\n\t\t\t}\n\n\t\t\t// Check if our hooks are registered (check for SessionStart as indicator)\n\t\t\treturn Array.isArray(settings.hooks.SessionStart)\n\t\t} catch {\n\t\t\treturn false\n\t\t}\n\t}\n\n\t/**\n\t * Install the hook script from bundled templates\n\t * Skips write if destination already has identical content\n\t */\n\tprivate async installHookScript(): Promise<void> {\n\t\tconst sourcePath = path.join(this.templateDir, 'iloom-hook.js')\n\t\tconst destPath = path.join(this.hooksDir, 'iloom-hook.js')\n\n\t\t// Check if source template exists\n\t\tif (!(await fs.pathExists(sourcePath))) {\n\t\t\tthrow new Error(`Hook template not found at ${sourcePath}`)\n\t\t}\n\n\t\t// Skip if destination exists and content matches\n\t\tif (await fs.pathExists(destPath)) {\n\t\t\tconst [sourceContent, destContent] = await Promise.all([\n\t\t\t\tfs.readFile(sourcePath, 'utf8'),\n\t\t\t\tfs.readFile(destPath, 'utf8')\n\t\t\t])\n\t\t\tif (sourceContent === destContent) {\n\t\t\t\tlogger.debug('Hook script already up to date, skipping')\n\t\t\t\treturn\n\t\t\t}\n\t\t}\n\n\t\t// Copy hook script (only when content differs or doesn't exist)\n\t\tawait fs.copyFile(sourcePath, destPath)\n\t\tlogger.debug('Hook script installed', { sourcePath, destPath })\n\t}\n\n\t/**\n\t * Merge hook configuration into settings.json\n\t * Preserves existing user hooks and comments\n\t */\n\tprivate async mergeHookConfig(): Promise<void> {\n\t\t// Ensure ~/.claude directory exists\n\t\tawait fs.ensureDir(this.claudeDir)\n\n\t\t// Read existing settings (or create empty)\n\t\tlet existingContent = '{}'\n\t\tlet existingSettings: ClaudeSettings = {}\n\n\t\tif (await fs.pathExists(this.settingsPath)) {\n\t\t\texistingContent = await fs.readFile(this.settingsPath, 'utf8')\n\t\t\tconst errors: ParseError[] = []\n\t\t\texistingSettings = parse(existingContent, errors, { allowTrailingComma: true }) as ClaudeSettings\n\n\t\t\tif (errors.length > 0) {\n\t\t\t\tlogger.warn('Existing settings.json has parse errors, will attempt to merge anyway')\n\t\t\t}\n\t\t}\n\n\t\t// Get our hook configuration\n\t\tconst ourHooks = this.getHookConfig()\n\n\t\t// Merge hooks - preserve user's existing hooks on same events\n\t\tconst mergedHooks: Record<string, HookEventConfig[]> = { ...(existingSettings.hooks ?? {}) }\n\t\tlet hooksAdded = false\n\n\t\tfor (const [eventName, eventConfigs] of Object.entries(ourHooks)) {\n\t\t\tconst existing = mergedHooks[eventName] ?? []\n\n\t\t\t// Check if our hook is already registered\n\t\t\tconst ourConfig = eventConfigs[0]\n\t\t\tconst ourCommand = ourConfig?.hooks?.[0]?.command\n\t\t\tconst existingConfigIndex = existing.findIndex(\n\t\t\t\t(config) => config.hooks?.some((h) => h.command === ourCommand)\n\t\t\t)\n\n\t\t\tif (existingConfigIndex === -1) {\n\t\t\t\t// Add our hook config to the event\n\t\t\t\tmergedHooks[eventName] = [...existing, ...eventConfigs]\n\t\t\t\thooksAdded = true\n\t\t\t} else {\n\t\t\t\t// Hook is already registered - check if we need to update the matcher\n\t\t\t\tconst existingConfig = existing[existingConfigIndex]\n\t\t\t\tconst ourMatcher = ourConfig?.matcher\n\n\t\t\t\t// Update matcher if our config has one and existing doesn't match\n\t\t\t\tif (existingConfig && ourMatcher !== undefined && existingConfig.matcher !== ourMatcher) {\n\t\t\t\t\texisting[existingConfigIndex] = {\n\t\t\t\t\t\t...existingConfig,\n\t\t\t\t\t\tmatcher: ourMatcher\n\t\t\t\t\t}\n\t\t\t\t\thooksAdded = true\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\n\t\t// Skip write if no new hooks were added\n\t\tif (!hooksAdded) {\n\t\t\tlogger.debug('All hooks already registered, skipping settings.json update')\n\t\t\treturn\n\t\t}\n\n\t\t// Write updated settings\n\t\tlet content: string\n\n\t\t// Check if existing content has comments\n\t\tif (existingContent.includes('//') || existingContent.includes('/*')) {\n\t\t\t// Use jsonc-parser to preserve comments\n\t\t\tlet modifiedContent = existingContent\n\t\t\tconst edits = modify(modifiedContent, ['hooks'], mergedHooks, {})\n\t\t\tcontent = applyEdits(modifiedContent, edits)\n\t\t} else {\n\t\t\t// No comments - use JSON.stringify\n\t\t\tconst updatedSettings: ClaudeSettings = {\n\t\t\t\t...existingSettings,\n\t\t\t\thooks: mergedHooks\n\t\t\t}\n\t\t\tcontent = JSON.stringify(updatedSettings, null, 2) + '\\n'\n\t\t}\n\n\t\t// Write atomically using temp file + rename\n\t\tconst tempPath = `${this.settingsPath}.tmp`\n\t\tawait fs.writeFile(tempPath, content, 'utf8')\n\t\tawait fs.rename(tempPath, this.settingsPath)\n\n\t\tlogger.debug('Hook configuration merged into settings.json')\n\t}\n\n\t/**\n\t * Get the hook configuration to register\n\t *\n\t * Each event maps to a hook that runs iloom-hook.js\n\t */\n\tprivate getHookConfig(): Record<string, HookEventConfig[]> {\n\t\tconst hookCommand = `node ${path.join(this.hooksDir, 'iloom-hook.js')}`\n\n\t\treturn {\n\t\t\tNotification: [\n\t\t\t\t{ hooks: [{ type: 'command', command: hookCommand }] }\n\t\t\t],\n\t\t\tStop: [\n\t\t\t\t{ hooks: [{ type: 'command', command: hookCommand }] }\n\t\t\t],\n\t\t\tSubagentStop: [\n\t\t\t\t{ hooks: [{ type: 'command', command: hookCommand }] }\n\t\t\t],\n\t\t\tPermissionRequest: [\n\t\t\t\t{ matcher: '*', hooks: [{ type: 'command', command: hookCommand, timeout: 86400 }] }\n\t\t\t],\n\t\t\tPreToolUse: [\n\t\t\t\t{ matcher: '*', hooks: [{ type: 'command', command: hookCommand }] }\n\t\t\t],\n\t\t\tPostToolUse: [\n\t\t\t\t{ matcher: '*', hooks: [{ type: 'command', command: hookCommand }] }\n\t\t\t],\n\t\t\tSessionStart: [\n\t\t\t\t{ matcher: '*', hooks: [{ type: 'command', command: hookCommand }] }\n\t\t\t],\n\t\t\tSessionEnd: [\n\t\t\t\t{ hooks: [{ type: 'command', command: hookCommand }] }\n\t\t\t],\n\t\t\tUserPromptSubmit: [\n\t\t\t\t{ hooks: [{ type: 'command', command: hookCommand }] }\n\t\t\t]\n\t\t}\n\t}\n}\n","import path from 'path'\nimport fs from 'fs-extra'\nimport { GitWorktreeManager } from './GitWorktreeManager.js'\nimport { MetadataManager, type WriteMetadataInput, type SwarmState } from './MetadataManager.js'\nimport { AgentManager } from './AgentManager.js'\nimport { SettingsManager, type IloomSettings } from './SettingsManager.js'\nimport { PromptTemplateManager, buildReviewTemplateVariables, type TemplateVariables } from './PromptTemplateManager.js'\nimport { IssueTrackerFactory } from './IssueTrackerFactory.js'\nimport { IssueManagementProviderFactory } from '../mcp/IssueManagementProviderFactory.js'\nimport { getLogger } from '../utils/logger-context.js'\nimport { preAcceptClaudeTrust } from '../utils/claude-trust.js'\nimport { installDependencies } from '../utils/package-manager.js'\nimport { generateWorktreePath } from '../utils/git.js'\nimport { generateAndWriteMcpConfigFile } from '../utils/mcp.js'\n\n/**\n * Result of the swarm setup process\n */\nexport interface SwarmSetupResult {\n\tepicWorktreePath: string\n\tepicBranch: string\n\tchildWorktrees: Array<{\n\t\tissueId: string\n\t\tworktreePath: string\n\t\tbranch: string\n\t\tsuccess: boolean\n\t\terror?: string\n\t}>\n\tagentsRendered: string[]\n\tworkerAgentRendered: boolean\n}\n\n/**\n * Metadata extracted from agent YAML frontmatter for use in claude -p commands.\n * Maps agent file name (without .md) to model and tools info.\n */\nexport interface SwarmAgentMetadata {\n\t[agentFileName: string]: {\n\t\tmodel: string\n\t\ttools?: string[]\n\t}\n}\n\n/**\n * Child issue data as stored in epic metadata\n */\nexport interface SwarmChildIssue {\n\tnumber: string // Prefixed: \"#123\" for GitHub, \"ENG-123\" for Linear\n\ttitle: string\n\tbody: string\n\turl: string\n}\n\n/**\n * SwarmSetupService handles the creation of child worktrees\n * for swarm mode, plus rendering swarm-mode agents and skill files.\n *\n * Called from the spin command (ignite.ts) when an epic loom is detected.\n * The epic worktree already exists (created by `il start`).\n */\nexport class SwarmSetupService {\n\tconstructor(\n\t\tprivate gitWorktree: GitWorktreeManager,\n\t\tprivate metadataManager: MetadataManager,\n\t\tprivate agentManager: AgentManager,\n\t\tprivate settingsManager: SettingsManager,\n\t\tprivate templateManager: PromptTemplateManager,\n\t) {}\n\n\t/**\n\t * Create child worktrees for each child issue, branched off the epic branch.\n\t * Writes iloom-metadata.json for each child with state: 'pending' and parentLoom.\n\t * Generates and writes per-loom MCP config file for each child.\n\t *\n\t * Uses standard iloom naming conventions via generateWorktreePath().\n\t *\n\t * @param childIssues - Array of child issues from epic metadata\n\t * @param epicBranch - The epic branch name (base branch for children)\n\t * @param epicWorktreePath - Path to the epic worktree\n\t * @param mainWorktreePath - Path to the main worktree (project root)\n\t * @param epicIssueNumber - The parent epic issue number\n\t * @param issueTrackerName - The issue tracker provider name (e.g., 'github')\n\t * @param settings - Optional settings for MCP config generation\n\t * @returns Array of results for each child worktree creation\n\t */\n\tasync createChildWorktrees(\n\t\tchildIssues: SwarmChildIssue[],\n\t\tepicBranch: string,\n\t\tepicWorktreePath: string,\n\t\tmainWorktreePath: string,\n\t\tepicIssueNumber: string | number,\n\t\tissueTrackerName: string,\n\t\tsettings?: IloomSettings,\n\t): Promise<SwarmSetupResult['childWorktrees']> {\n\t\treturn Promise.all(childIssues.map(async (child) => {\n\t\t\ttry {\n\t\t\t\t// Strip prefix from child number (e.g., \"#123\" -> \"123\", \"ENG-123\" stays as-is for branch naming)\n\t\t\t\tconst rawId = child.number.replace(/^#/, '')\n\n\t\t\t\t// Sanitize ID for safe git branch naming (replace non-alphanumeric except - and _ with -)\n\t\t\t\tconst safeId = rawId.replace(/[^a-zA-Z0-9-_]/g, '-')\n\n\t\t\t\t// Use standard iloom branch naming: issue/<id> pattern\n\t\t\t\tconst childBranch = `issue/${safeId}`\n\n\t\t\t\t// Use standard iloom worktree path generation\n\t\t\t\tconst childWorktreePath = generateWorktreePath(\n\t\t\t\t\tchildBranch,\n\t\t\t\t\tmainWorktreePath,\n\t\t\t\t)\n\n\t\t\t\tgetLogger().info(`Creating child worktree for ${child.number}: ${childWorktreePath}...`)\n\n\t\t\t\tawait this.gitWorktree.createWorktree({\n\t\t\t\t\tpath: childWorktreePath,\n\t\t\t\t\tbranch: childBranch,\n\t\t\t\t\tcreateBranch: true,\n\t\t\t\t\tbaseBranch: epicBranch,\n\t\t\t\t})\n\n\t\t\t\t// Pre-accept Claude Code trust for child worktree\n\t\t\t\ttry {\n\t\t\t\t\tawait preAcceptClaudeTrust(childWorktreePath)\n\t\t\t\t} catch (error) {\n\t\t\t\t\tgetLogger().warn(`Failed to pre-accept Claude trust for child worktree: ${error instanceof Error ? error.message : String(error)}`)\n\t\t\t\t}\n\n\t\t\t\t// Write metadata with state: 'pending' and parentLoom\n\t\t\t\tconst metadataInput: WriteMetadataInput = {\n\t\t\t\t\tdescription: child.title,\n\t\t\t\t\tbranchName: childBranch,\n\t\t\t\t\tworktreePath: childWorktreePath,\n\t\t\t\t\tissueType: 'issue',\n\t\t\t\t\tissue_numbers: [rawId],\n\t\t\t\t\tpr_numbers: [],\n\t\t\t\t\tissueTracker: issueTrackerName,\n\t\t\t\t\tcolorHex: '#808080',\n\t\t\t\t\tsessionId: '', // No session - not launching Claude directly\n\t\t\t\t\tprojectPath: mainWorktreePath,\n\t\t\t\t\tissueUrls: { [rawId]: child.url },\n\t\t\t\t\tprUrls: {},\n\t\t\t\t\tcapabilities: [],\n\t\t\t\t\tstate: 'pending' as SwarmState,\n\t\t\t\t\tparentLoom: {\n\t\t\t\t\t\ttype: 'epic',\n\t\t\t\t\t\tidentifier: epicIssueNumber,\n\t\t\t\t\t\tbranchName: epicBranch,\n\t\t\t\t\t\tworktreePath: epicWorktreePath,\n\t\t\t\t\t},\n\t\t\t\t}\n\n\t\t\t\ttry {\n\t\t\t\t\tawait this.metadataManager.writeMetadata(childWorktreePath, metadataInput)\n\t\t\t\t} catch (metaError) {\n\t\t\t\t\t// Clean up the worktree to avoid zombie worktrees without metadata\n\t\t\t\t\tgetLogger().warn(`Metadata write failed for ${child.number}, cleaning up worktree...`)\n\t\t\t\t\ttry {\n\t\t\t\t\t\tawait this.gitWorktree.removeWorktree(childWorktreePath, { force: true })\n\t\t\t\t\t} catch {\n\t\t\t\t\t\tgetLogger().debug(`Could not clean up worktree at ${childWorktreePath}`)\n\t\t\t\t\t}\n\t\t\t\t\tthrow metaError\n\t\t\t\t}\n\n\t\t\t\t// Generate and write per-loom MCP config file\n\t\t\t\ttry {\n\t\t\t\t\tconst childMetadata = await this.metadataManager.readMetadata(childWorktreePath)\n\t\t\t\t\tif (childMetadata) {\n\t\t\t\t\t\tconst providerName = IssueTrackerFactory.getProviderName(\n\t\t\t\t\t\t\tsettings ?? await this.settingsManager.loadSettings(),\n\t\t\t\t\t\t) as 'github' | 'linear' | 'jira'\n\t\t\t\t\t\tconst mcpConfigPath = await generateAndWriteMcpConfigFile(\n\t\t\t\t\t\t\tchildWorktreePath,\n\t\t\t\t\t\t\tchildMetadata,\n\t\t\t\t\t\t\tproviderName,\n\t\t\t\t\t\t\tsettings,\n\t\t\t\t\t\t)\n\t\t\t\t\t\tawait this.metadataManager.updateMetadata(childWorktreePath, { mcpConfigPath })\n\n\t\t\t\t\t\t// Write MCP config path to .claude/iloom-swarm-mcp-config-path for worker discovery\n\t\t\t\t\t\tconst claudeDir = path.join(childWorktreePath, '.claude')\n\t\t\t\t\t\tawait fs.ensureDir(claudeDir)\n\t\t\t\t\t\tawait fs.writeFile(\n\t\t\t\t\t\t\tpath.join(claudeDir, 'iloom-swarm-mcp-config-path'),\n\t\t\t\t\t\t\tmcpConfigPath,\n\t\t\t\t\t\t\t'utf-8',\n\t\t\t\t\t\t)\n\n\t\t\t\t\t\tgetLogger().debug(`Wrote MCP config for ${child.number}: ${mcpConfigPath}`)\n\t\t\t\t\t}\n\t\t\t\t} catch (error) {\n\t\t\t\t\t// Non-fatal: child can still work without MCP config\n\t\t\t\t\tgetLogger().warn(\n\t\t\t\t\t\t`Failed to write MCP config for child ${child.number}: ${error instanceof Error ? error.message : 'Unknown error'}`,\n\t\t\t\t\t)\n\t\t\t\t}\n\n\t\t\t\t// Install dependencies in the child worktree\n\t\t\t\ttry {\n\t\t\t\t\tawait installDependencies(childWorktreePath, true, true)\n\t\t\t\t} catch (error) {\n\t\t\t\t\tgetLogger().warn(\n\t\t\t\t\t\t`Failed to install dependencies in child worktree ${child.number}: ${error instanceof Error ? error.message : 'Unknown error'}`,\n\t\t\t\t\t)\n\t\t\t\t}\n\n\t\t\t\tgetLogger().success(`Created child worktree for ${child.number}`)\n\t\t\t\treturn {\n\t\t\t\t\tissueId: rawId,\n\t\t\t\t\tworktreePath: childWorktreePath,\n\t\t\t\t\tbranch: childBranch,\n\t\t\t\t\tsuccess: true,\n\t\t\t\t}\n\t\t\t} catch (error) {\n\t\t\t\tconst rawId = child.number.replace(/^#/, '')\n\t\t\t\tconst errorMessage = error instanceof Error ? error.message : 'Unknown error'\n\t\t\t\tgetLogger().warn(`Failed to create child worktree for ${child.number}: ${errorMessage}`)\n\t\t\t\treturn {\n\t\t\t\t\tissueId: rawId,\n\t\t\t\t\tworktreePath: '',\n\t\t\t\t\tbranch: '',\n\t\t\t\t\tsuccess: false,\n\t\t\t\t\terror: errorMessage,\n\t\t\t\t}\n\t\t\t}\n\t\t}))\n\t}\n\n\t/**\n\t * Render swarm-mode agent templates to the epic worktree's .claude/agents/ directory.\n\t *\n\t * Phase agent files are written WITHOUT frontmatter (prompt body only) because they are\n\t * loaded via `--append-system-prompt-file` which does not parse YAML frontmatter.\n\t * Model and tools metadata is extracted from the agent config and returned separately\n\t * for use as CLI flags in `claude -p` commands.\n\t */\n\tasync renderSwarmAgents(epicWorktreePath: string): Promise<{\n\t\trenderedFiles: string[]\n\t\tmetadata: SwarmAgentMetadata\n\t}> {\n\t\tconst claudeAgentsDir = path.join(epicWorktreePath, '.claude', 'agents')\n\t\tawait fs.ensureDir(claudeAgentsDir)\n\n\t\tconst settings = await this.settingsManager.loadSettings()\n\n\t\tconst templateVariables: TemplateVariables = {\n\t\t\tSWARM_MODE: true,\n\t\t}\n\n\t\tconst agents = await this.agentManager.loadAgents(settings, templateVariables)\n\n\t\t// Default swarmModel map for \"Balanced\" mode. All swarm phase agents are\n\t\t// listed explicitly so that swarm mode never accidentally inherits a\n\t\t// non-swarm model override. User-configured swarmModel values always\n\t\t// take precedence.\n\t\tconst defaultSwarmModels: Record<string, 'sonnet' | 'opus' | 'haiku'> = {\n\t\t\t'iloom-issue-analyzer': 'opus',\n\t\t\t'iloom-issue-analyze-and-plan': 'opus',\n\t\t\t'iloom-issue-planner': 'sonnet',\n\t\t\t'iloom-issue-implementer': 'sonnet',\n\t\t\t'iloom-issue-enhancer': 'sonnet',\n\t\t\t'iloom-code-reviewer': 'sonnet',\n\t\t\t'iloom-issue-complexity-evaluator': 'haiku',\n\t\t}\n\n\t\t// Apply per-agent swarmModel overrides (user-configured takes precedence over defaults)\n\t\tfor (const [agentName, agentConfig] of Object.entries(agents)) {\n\t\t\tconst userSwarmModel = settings?.agents?.[agentName]?.swarmModel\n\t\t\tif (userSwarmModel) {\n\t\t\t\tagents[agentName] = { ...agentConfig, model: userSwarmModel }\n\t\t\t} else if (defaultSwarmModels[agentName]) {\n\t\t\t\tagents[agentName] = { ...agentConfig, model: defaultSwarmModels[agentName] }\n\t\t\t}\n\t\t}\n\n\t\tconst renderedFiles: string[] = []\n\t\tconst metadata: SwarmAgentMetadata = {}\n\n\t\tfor (const [agentName, agentConfig] of Object.entries(agents)) {\n\t\t\tconst swarmFileName = agentName.startsWith('iloom-')\n\t\t\t\t? `iloom-swarm-${agentName.slice('iloom-'.length)}.md`\n\t\t\t\t: `iloom-swarm-${agentName}.md`\n\n\t\t\tconst agentKey = swarmFileName.replace('.md', '')\n\n\t\t\t// Extract metadata from agent config for use in claude -p CLI flags\n\t\t\tmetadata[agentKey] = {\n\t\t\t\tmodel: agentConfig.model,\n\t\t\t\t...(agentConfig.tools && { tools: agentConfig.tools }),\n\t\t\t}\n\n\t\t\t// Write file WITHOUT frontmatter - prompt body only\n\t\t\t// Phase agents are loaded via --append-system-prompt-file which does not parse YAML frontmatter\n\t\t\tconst outputPath = path.join(claudeAgentsDir, swarmFileName)\n\t\t\tawait fs.writeFile(outputPath, agentConfig.prompt + '\\n', 'utf-8')\n\t\t\trenderedFiles.push(swarmFileName)\n\t\t\tgetLogger().debug(`Rendered swarm agent: ${swarmFileName}`)\n\t\t}\n\n\t\tgetLogger().success(`Rendered ${renderedFiles.length} swarm agents to ${claudeAgentsDir}`)\n\t\treturn { renderedFiles, metadata }\n\t}\n\n\t/**\n\t * Render the swarm worker agent file to the epic worktree's .claude/agents/ directory.\n\t *\n\t * This creates an agent file at `.claude/agents/iloom-swarm-worker.md` containing\n\t * the full iloom workflow instructions (rendered from issue-prompt.txt with SWARM_MODE=true).\n\t * The orchestrator spawns children with `subagent_type: \"iloom-swarm-worker\"` so these\n\t * instructions become the agent's system prompt (high authority), rather than arriving\n\t * as a skill invocation (low authority user message).\n\t *\n\t * The agent file is shared across all children. Issue-specific context (number, title,\n\t * worktree path, body) is provided per-child via the Task prompt from the orchestrator.\n\t */\n\tasync renderSwarmWorkerAgent(\n\t\tepicWorktreePath: string,\n\t\tagentMetadata?: SwarmAgentMetadata,\n\t): Promise<boolean> {\n\t\tconst agentsDir = path.join(epicWorktreePath, '.claude', 'agents')\n\t\tconst agentOutputPath = path.join(agentsDir, 'iloom-swarm-worker.md')\n\n\t\tawait fs.ensureDir(agentsDir)\n\n\t\ttry {\n\t\t\t// Load settings for review configuration and issue prefix\n\t\t\tconst settings = await this.settingsManager.loadSettings()\n\t\t\tconst providerType = settings?.issueManagement?.provider ?? 'github'\n\t\t\tconst issuePrefix = IssueManagementProviderFactory.create(providerType, settings ?? undefined).issuePrefix\n\n\t\t\t// Compute sub-agent timeout in milliseconds (default: 10 minutes)\n\t\t\tconst subAgentTimeoutMinutes = settings?.agents?.['iloom-swarm-worker']?.subAgentTimeout ?? 10\n\t\t\tconst subAgentTimeoutMs = subAgentTimeoutMinutes * 60 * 1000\n\n\t\t\t// Build template variables for swarm worker agent rendering\n\t\t\tconst variables: TemplateVariables = {\n\t\t\t\tSWARM_MODE: true,\n\t\t\t\tONE_SHOT_MODE: true,\n\t\t\t\tCOMPLEXITY_OVERRIDE: 'simple',\n\t\t\t\tEPIC_WORKTREE_PATH: epicWorktreePath,\n\t\t\t\tISSUE_PREFIX: issuePrefix,\n\t\t\t\tSWARM_SUB_AGENT_TIMEOUT_MS: subAgentTimeoutMs,\n\t\t\t\t...(agentMetadata && { SWARM_AGENT_METADATA: JSON.stringify(agentMetadata) }),\n\t\t\t\t...buildReviewTemplateVariables(true, settings?.agents),\n\t\t\t}\n\n\t\t\t// Render issue prompt template with swarm variables\n\t\t\tconst agentBody = await this.templateManager.getPrompt('issue', variables)\n\n\t\t\t// Build the agent file with frontmatter\n\t\t\tconst workerModel = settings?.agents?.['iloom-swarm-worker']?.model ?? 'opus'\n\n\t\t\tconst frontmatter = [\n\t\t\t\t'---',\n\t\t\t\t'name: iloom-swarm-worker',\n\t\t\t\t'description: Swarm worker agent that implements a child issue following the full iloom workflow.',\n\t\t\t\t`model: ${workerModel}`,\n\t\t\t\t'---',\n\t\t\t].join('\\n')\n\n\t\t\tconst content = `${frontmatter}\\n\\n${agentBody}\\n`\n\n\t\t\tawait fs.writeFile(agentOutputPath, content, 'utf-8')\n\t\t\tgetLogger().success(`Rendered swarm worker agent to ${agentOutputPath}`)\n\t\t\treturn true\n\t\t} catch (error) {\n\t\t\t// Intentional graceful degradation: setupSwarm reports workerAgentRendered=false\n\t\t\t// in its result rather than aborting the entire swarm setup.\n\t\t\tgetLogger().warn(\n\t\t\t\t`Failed to render swarm worker agent: ${error instanceof Error ? error.message : 'Unknown error'}`,\n\t\t\t)\n\t\t\treturn false\n\t\t}\n\t}\n\n\t/**\n\t * Copy .claude/agents/ from the epic worktree to each child worktree.\n\t *\n\t * Child workers need local access to agent files (used via --append-system-prompt-file).\n\t * Without this copy, child worktrees lack the rendered agent files since they only\n\t * exist in the epic worktree after renderSwarmAgents/renderSwarmWorkerAgent.\n\t */\n\tasync copyAgentsToChildWorktrees(\n\t\tepicWorktreePath: string,\n\t\tchildWorktrees: SwarmSetupResult['childWorktrees'],\n\t): Promise<void> {\n\t\tconst sourceDir = path.join(epicWorktreePath, '.claude', 'agents')\n\n\t\tif (!await fs.pathExists(sourceDir)) {\n\t\t\tgetLogger().warn('No .claude/agents/ directory in epic worktree to copy')\n\t\t\treturn\n\t\t}\n\n\t\tconst successfulChildren = childWorktrees.filter((c) => c.success)\n\n\t\tawait Promise.all(successfulChildren.map(async (child) => {\n\t\t\ttry {\n\t\t\t\tconst targetDir = path.join(child.worktreePath, '.claude', 'agents')\n\t\t\t\tawait fs.copy(sourceDir, targetDir, { overwrite: true })\n\t\t\t\tgetLogger().debug(`Copied .claude/agents/ to ${child.worktreePath}`)\n\t\t\t} catch (error) {\n\t\t\t\t// Non-fatal: worker can fall back to epic worktree path\n\t\t\t\tgetLogger().warn(\n\t\t\t\t\t`Failed to copy agents to child worktree ${child.issueId}: ${error instanceof Error ? error.message : 'Unknown error'}`,\n\t\t\t\t)\n\t\t\t}\n\t\t}))\n\n\t\tgetLogger().success(`Copied agents to ${successfulChildren.length} child worktrees`)\n\t}\n\n\t/**\n\t * Run the full swarm setup: child worktrees, agents, and worker agent.\n\t *\n\t * The epic worktree already exists (created by `il start`).\n\t */\n\tasync setupSwarm(\n\t\tepicIssueNumber: string | number,\n\t\tepicBranch: string,\n\t\tepicWorktreePath: string,\n\t\tchildIssues: SwarmChildIssue[],\n\t\tmainWorktreePath: string,\n\t\tissueTrackerName: string,\n\t\tsettings?: IloomSettings,\n\t): Promise<SwarmSetupResult> {\n\t\t// 1. Create child worktrees (with per-loom MCP config generation)\n\t\tconst childWorktrees = await this.createChildWorktrees(\n\t\t\tchildIssues,\n\t\t\tepicBranch,\n\t\t\tepicWorktreePath,\n\t\t\tmainWorktreePath,\n\t\t\tepicIssueNumber,\n\t\t\tissueTrackerName,\n\t\t\tsettings,\n\t\t)\n\n\t\t// 2. Render swarm agents to epic worktree's .claude/ directory (returns metadata)\n\t\tconst { renderedFiles: agentsRendered, metadata: agentMetadata } =\n\t\t\tawait this.renderSwarmAgents(epicWorktreePath)\n\n\t\t// 3. Render the swarm worker agent file with agent metadata\n\t\tconst workerAgentRendered = await this.renderSwarmWorkerAgent(\n\t\t\tepicWorktreePath,\n\t\t\tagentMetadata,\n\t\t)\n\n\t\t// 4. Copy .claude/agents/ from epic worktree to each child worktree\n\t\tawait this.copyAgentsToChildWorktrees(epicWorktreePath, childWorktrees)\n\n\t\tconst successCount = childWorktrees.filter((c) => c.success).length\n\t\tconst failCount = childWorktrees.filter((c) => !c.success).length\n\n\t\tgetLogger().success(\n\t\t\t`Swarm setup complete: ${successCount} child worktrees` +\n\t\t\t\t(failCount > 0 ? ` (${failCount} failed)` : ''),\n\t\t)\n\n\t\treturn {\n\t\t\tepicWorktreePath,\n\t\t\tepicBranch,\n\t\t\tchildWorktrees,\n\t\t\tagentsRendered,\n\t\t\tworkerAgentRendered,\n\t\t}\n\t}\n}\n","import fs from 'fs-extra'\nimport path from 'path'\nimport fg from 'fast-glob'\n\n/**\n * Detect the primary programming language of a project by checking for common project files.\n * Checks are performed in priority order; the first match wins.\n * All errors are caught and return 'unknown' — this function is non-blocking.\n */\nexport async function detectProjectLanguage(projectPath: string): Promise<string> {\n try {\n // 1. package.json → check for 'typescript' in deps/devDeps → 'typescript' or 'javascript'\n const packageJsonPath = path.join(projectPath, 'package.json')\n if (await fs.pathExists(packageJsonPath)) {\n try {\n const pkg = await fs.readJson(packageJsonPath) as {\n dependencies?: Record<string, string>\n devDependencies?: Record<string, string>\n }\n const allDeps = { ...pkg.dependencies, ...pkg.devDependencies }\n return 'typescript' in allDeps ? 'typescript' : 'javascript'\n } catch {\n return 'javascript'\n }\n }\n\n // 2. Cargo.toml → 'rust'\n if (await fs.pathExists(path.join(projectPath, 'Cargo.toml'))) {\n return 'rust'\n }\n\n // 3. go.mod → 'go'\n if (await fs.pathExists(path.join(projectPath, 'go.mod'))) {\n return 'go'\n }\n\n // 4. pyproject.toml | setup.py | requirements.txt → 'python'\n for (const file of ['pyproject.toml', 'setup.py', 'requirements.txt']) {\n if (await fs.pathExists(path.join(projectPath, file))) {\n return 'python'\n }\n }\n\n // 5. Gemfile → 'ruby'\n if (await fs.pathExists(path.join(projectPath, 'Gemfile'))) {\n return 'ruby'\n }\n\n // 6. pom.xml | build.gradle | build.gradle.kts → 'java'\n for (const file of ['pom.xml', 'build.gradle', 'build.gradle.kts']) {\n if (await fs.pathExists(path.join(projectPath, file))) {\n return 'java'\n }\n }\n\n // 7. *.csproj via glob → 'csharp'\n const csprojFiles = await fg('*.csproj', { cwd: projectPath, dot: false })\n if (csprojFiles.length > 0) {\n return 'csharp'\n }\n\n // 8. Default\n return 'unknown'\n } catch {\n return 'unknown'\n }\n}\n","import path from 'path'\nimport fs from 'fs-extra'\n\n/**\n * Result of preparing the system prompt for a specific platform.\n * Exactly one of these strategies will be populated.\n */\nexport interface SystemPromptConfig {\n\t/** Inline system prompt (macOS + Linux) */\n\tappendSystemPrompt?: string\n\t/** Plugin directory for --plugin-dir (Windows) */\n\tpluginDir?: string\n\t/** Override the initial user prompt (Windows: '/clear' to trigger SessionStart) */\n\tinitialPromptOverride?: string\n}\n\n/**\n * Prepare the system prompt for the current platform.\n *\n * - darwin: inline via --append-system-prompt (unchanged)\n * - linux: inline via --append-system-prompt (80KB < 128KB limit)\n * - win32: write to file, create SessionStart plugin, pass /clear\n */\nexport async function prepareSystemPromptForPlatform(\n\tsystemPrompt: string,\n\tworkspacePath: string,\n\tplatform: string = process.platform,\n): Promise<SystemPromptConfig> {\n\tif (platform === 'darwin' || platform === 'linux') {\n\t\t// macOS and Linux: inline system prompt\n\t\treturn { appendSystemPrompt: systemPrompt }\n\t}\n\n\t// Windows: write system prompt to file, create SessionStart hook plugin\n\tconst claudeDir = path.join(workspacePath, '.claude')\n\tconst promptFilePath = path.join(claudeDir, 'iloom-system-prompt.md')\n\tconst pluginDir = path.join(claudeDir, 'iloom-plugin')\n\n\tawait fs.ensureDir(claudeDir)\n\tawait fs.writeFile(promptFilePath, systemPrompt, 'utf-8')\n\n\t// Create plugin directory with SessionStart hook\n\tawait createSessionStartPlugin(pluginDir, promptFilePath)\n\n\treturn {\n\t\tpluginDir,\n\t\tinitialPromptOverride: '/clear',\n\t}\n}\n\n/**\n * Create a SessionStart hook plugin that injects the system prompt file content.\n *\n * Writes a small runner.js script that reads and outputs the prompt file,\n * since `cat` is not available natively on Windows and Node.js is guaranteed\n * to be present (Claude Code requires it).\n *\n * Uses a runner file instead of `node -e` to avoid command injection when\n * the workspace path contains quotes or special characters.\n */\nexport async function createSessionStartPlugin(\n\tpluginDir: string,\n\tpromptFilePath: string,\n): Promise<void> {\n\tawait fs.ensureDir(pluginDir)\n\n\t// Write a small runner script that safely embeds the file path via JSON.stringify\n\tconst runnerScript = `process.stdout.write(require('fs').readFileSync(${JSON.stringify(promptFilePath)}, 'utf-8'));`\n\tawait fs.writeFile(path.join(pluginDir, 'runner.js'), runnerScript, 'utf-8')\n\n\t// Use forward slashes in the hooks command for cross-platform portability\n\tconst portableRunnerPath = path.join(pluginDir, 'runner.js').replace(/\\\\/g, '/')\n\n\tconst hooksConfig = {\n\t\thooks: {\n\t\t\tSessionStart: [\n\t\t\t\t{\n\t\t\t\t\tmatcher: '*',\n\t\t\t\t\thooks: [\n\t\t\t\t\t\t{\n\t\t\t\t\t\t\ttype: 'command' as const,\n\t\t\t\t\t\t\tcommand: `node \"${portableRunnerPath}\"`,\n\t\t\t\t\t\t},\n\t\t\t\t\t],\n\t\t\t\t},\n\t\t\t],\n\t\t},\n\t}\n\n\tawait fs.writeFile(\n\t\tpath.join(pluginDir, 'hooks.json'),\n\t\tJSON.stringify(hooksConfig, null, 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- {"version":3,"sources":["../src/lib/MergeManager.ts","../src/lib/BuildRunner.ts"],"sourcesContent":["import { executeGitCommand, fetchOrigin, findMainWorktreePathWithSettings, findWorktreeForBranch, getMergeTargetBranch, GitCommandError } from '../utils/git.js'\nimport { getLogger } from '../utils/logger-context.js'\nimport { detectClaudeCli, launchClaude } from '../utils/claude.js'\nimport { SettingsManager } from './SettingsManager.js'\nimport { MetadataManager } from './MetadataManager.js'\nimport type { MergeOptions, RebaseOutcome } from '../types/index.js'\n\n/**\n * MergeManager handles Git rebase and fast-forward merge operations\n * Implements fail-fast behavior for conflicts (Phase 1 - no Claude assistance)\n *\n * Ports bash/merge-and-clean.sh lines 781-1090\n */\nexport class MergeManager {\n\tprivate settingsManager: SettingsManager\n\tprivate metadataManager: MetadataManager\n\n\tconstructor(settingsManager?: SettingsManager, metadataManager?: MetadataManager) {\n\t\tthis.settingsManager = settingsManager ?? new SettingsManager()\n\t\tthis.metadataManager = metadataManager ?? new MetadataManager()\n\t}\n\n\t/**\n\t * Get the merge target branch for a loom\n\t * Priority: parent loom metadata > configured main branch > 'main'\n\t * @param worktreePath - Optional path to load settings/metadata from (defaults to process.cwd())\n\t * @private\n\t */\n\tprivate async getMainBranch(worktreePath?: string): Promise<string> {\n\t\t// Delegate to shared utility function\n\t\treturn getMergeTargetBranch(worktreePath ?? process.cwd(), {\n\t\t\tsettingsManager: this.settingsManager,\n\t\t\tmetadataManager: this.metadataManager,\n\t\t})\n\t}\n\n\t/**\n\t * Rebase current branch on main with fail-fast on conflicts\n\t * Ports bash/merge-and-clean.sh lines 781-913\n\t *\n\t * @param worktreePath - Path to the worktree\n\t * @param options - Merge options (dryRun, force)\n\t * @throws Error if main branch doesn't exist, uncommitted changes exist, or conflicts occur\n\t */\n\tasync rebaseOnMain(worktreePath: string, options: MergeOptions = {}): Promise<RebaseOutcome> {\n\t\tconst { dryRun = false, force = false, jsonStream = false } = options\n\n\t\t// Pre-check: abort any in-progress rebase before starting a new one\n\t\tawait this.abortInProgressRebase(worktreePath)\n\n\t\tconst mainBranch = await this.getMainBranch(worktreePath)\n\n\t\t// Determine whether to use remote (origin/) or local branch reference\n\t\t// - Child looms: always use local parent branch (parent may not be pushed)\n\t\t// - PR modes (github-pr, github-draft-pr) for non-child: fetch and use origin/{branch}\n\t\t// - Local mode: use local branch (no fetch)\n\t\tconst metadata = await this.metadataManager.readMetadata(worktreePath)\n\t\tconst isChildLoom = !!metadata?.parentLoom\n\t\tconst settings = await this.settingsManager.loadSettings(worktreePath)\n\t\tconst mergeBehaviorMode = settings.mergeBehavior?.mode ?? 'local'\n\t\tconst isPRMode = mergeBehaviorMode === 'github-pr' || mergeBehaviorMode === 'github-draft-pr'\n\t\tconst useRemote = isPRMode && !isChildLoom\n\n\t\tlet targetBranch: string\n\t\tif (useRemote) {\n\t\t\t// PR modes (non-child): fetch and use origin/{branch}\n\t\t\tgetLogger().info('Fetching from origin...')\n\t\t\tawait fetchOrigin(worktreePath)\n\t\t\ttargetBranch = `origin/${mainBranch}`\n\t\t} else {\n\t\t\t// Local mode or child loom: use local branch\n\t\t\tgetLogger().info(`Using local branch ${mainBranch} for rebase...`)\n\t\t\ttargetBranch = mainBranch\n\t\t}\n\n\t\tgetLogger().info(`Starting rebase on ${targetBranch}...`)\n\n\t\t// Step 1: Check if branch exists (remote ref for origin/, local ref otherwise)\n\t\tconst refPath = useRemote ? `refs/remotes/${targetBranch}` : `refs/heads/${targetBranch}`\n\t\ttry {\n\t\t\tawait executeGitCommand(['show-ref', '--verify', '--quiet', refPath], {\n\t\t\t\tcwd: worktreePath,\n\t\t\t})\n\t\t} catch {\n\t\t\tif (useRemote) {\n\t\t\t\tthrow new Error(\n\t\t\t\t\t`Remote branch \"${targetBranch}\" does not exist. Cannot rebase.\\n` +\n\t\t\t\t\t\t`Ensure the repository has a \"${mainBranch}\" branch on origin.`\n\t\t\t\t)\n\t\t\t} else {\n\t\t\t\tthrow new Error(\n\t\t\t\t\t`Local branch \"${targetBranch}\" does not exist. Cannot rebase.\\n` +\n\t\t\t\t\t\t`Ensure the branch exists locally.`\n\t\t\t\t)\n\t\t\t}\n\t\t}\n\n\t\t// Step 2: Check for uncommitted changes and create WIP commit if needed\n\t\tconst statusOutput = await executeGitCommand(['status', '--porcelain'], {\n\t\t\tcwd: worktreePath,\n\t\t})\n\n\t\tlet wipCommitHash: string | null = null\n\t\tif (statusOutput.trim()) {\n\t\t\tgetLogger().info('Uncommitted changes detected, creating temporary WIP commit...')\n\t\t\twipCommitHash = await this.createWipCommit(worktreePath)\n\t\t\tgetLogger().debug(`Created WIP commit: ${wipCommitHash}`)\n\t\t}\n\n\t\t// Step 3: Check if rebase is needed by comparing merge-base with target HEAD\n\t\tconst mergeBase = await executeGitCommand(['merge-base', targetBranch, 'HEAD'], {\n\t\t\tcwd: worktreePath,\n\t\t})\n\n\t\tconst targetHead = await executeGitCommand(['rev-parse', targetBranch], {\n\t\t\tcwd: worktreePath,\n\t\t})\n\n\t\tconst mergeBaseTrimmed = mergeBase.trim()\n\t\tconst targetHeadTrimmed = targetHead.trim()\n\n\t\t// If merge-base matches target HEAD, branch is already up to date\n\t\tif (mergeBaseTrimmed === targetHeadTrimmed) {\n\t\t\tgetLogger().success(`Branch is already up to date with ${targetBranch}. No rebase needed.`)\n\t\t\t// Restore WIP commit if created (soft reset to remove temporary commit)\n\t\t\tif (wipCommitHash) {\n\t\t\t\tawait this.restoreWipCommit(worktreePath, wipCommitHash)\n\t\t\t}\n\t\t\treturn { conflictsDetected: false, claudeLaunched: false, conflictsResolved: false }\n\t\t}\n\n\t\t// Step 4: Show commits to be rebased (for informational purposes)\n\t\tconst commitsOutput = await executeGitCommand(['log', '--oneline', `${targetBranch}..HEAD`], {\n\t\t\tcwd: worktreePath,\n\t\t})\n\n\t\tconst commits = commitsOutput.trim()\n\t\tconst commitLines = commits ? commits.split('\\n') : []\n\n\t\tif (commits) {\n\t\t\t// Show commits that will be rebased\n\t\t\tgetLogger().info(`Found ${commitLines.length} commit(s) to rebase:`)\n\t\t\tcommitLines.forEach((commit) => getLogger().info(` ${commit}`))\n\t\t} else {\n\t\t\t// Target has moved forward but branch has no new commits\n\t\t\tgetLogger().info(`${targetBranch} has moved forward. Rebasing to update branch...`)\n\t\t}\n\n\t\t// Step 5: User confirmation (unless force mode or dry-run)\n\t\tif (!force && !dryRun) {\n\t\t\t// TODO: Implement interactive prompt for confirmation\n\t\t\t// For now, proceeding automatically (use --force to skip this message)\n\t\t\tgetLogger().info('Proceeding with rebase... (use --force to skip confirmations)')\n\t\t}\n\n\t\t// Step 6: Execute rebase (unless dry-run)\n\t\tif (dryRun) {\n\t\t\tgetLogger().info(`[DRY RUN] Would execute: git rebase ${targetBranch}`)\n\t\t\tif (commitLines.length > 0) {\n\t\t\t\tgetLogger().info(`[DRY RUN] This would rebase ${commitLines.length} commit(s)`)\n\t\t\t}\n\t\t\treturn { conflictsDetected: false, claudeLaunched: false, conflictsResolved: false }\n\t\t}\n\n\t\t// Execute rebase\n\t\t// Use -c core.hooksPath=/dev/null to disable hooks during rebase\n\t\t// This prevents pre-commit hooks from running when commits are re-applied\n\t\ttry {\n\t\t\tawait executeGitCommand(['-c', 'core.hooksPath=/dev/null', 'rebase', targetBranch], { cwd: worktreePath })\n\t\t\tgetLogger().success('Rebase completed successfully!')\n\n\t\t\t// Restore WIP commit if created\n\t\t\tif (wipCommitHash) {\n\t\t\t\tawait this.restoreWipCommit(worktreePath, wipCommitHash)\n\t\t\t}\n\t\t\treturn { conflictsDetected: false, claudeLaunched: false, conflictsResolved: false }\n\t\t} catch (error) {\n\t\t\t// Detect conflicts\n\t\t\tconst conflictedFiles = await this.detectConflictedFiles(worktreePath)\n\n\t\t\tif (conflictedFiles.length > 0) {\n\t\t\t\t// Try Claude-assisted resolution first\n\t\t\t\tgetLogger().info('Merge conflicts detected, attempting Claude-assisted resolution...')\n\n\t\t\t\tconst resolved = await this.attemptClaudeConflictResolution(\n\t\t\t\t\tworktreePath,\n\t\t\t\t\tconflictedFiles,\n\t\t\t\t\t{ jsonStream }\n\t\t\t\t)\n\n\t\t\t\tif (resolved) {\n\t\t\t\t\tgetLogger().success('Conflicts resolved with Claude assistance, rebase completed')\n\n\t\t\t\t\t// Restore WIP commit if created\n\t\t\t\t\tif (wipCommitHash) {\n\t\t\t\t\t\tawait this.restoreWipCommit(worktreePath, wipCommitHash)\n\t\t\t\t\t}\n\t\t\t\t\treturn { conflictsDetected: true, claudeLaunched: true, conflictsResolved: true }\n\t\t\t\t}\n\n\t\t\t\t// Claude couldn't resolve or not available - fail fast\n\t\t\t\tconst conflictError = this.formatConflictError(conflictedFiles)\n\t\t\t\tthrow new Error(conflictError)\n\t\t\t}\n\n\t\t\t// If not a conflict, re-throw the original error\n\t\t\tthrow new Error(\n\t\t\t\t`Rebase failed: ${error instanceof Error ? error.message : String(error)}\\n` +\n\t\t\t\t\t'Run: git status for more details\\n' +\n\t\t\t\t\t'Or: git rebase --abort to cancel the rebase'\n\t\t\t)\n\t\t}\n\t}\n\n\t/**\n\t * Validate that fast-forward merge is possible\n\t * Ports bash/merge-and-clean.sh lines 957-968\n\t *\n\t * @param branchName - Name of the branch to merge\n\t * @param mainWorktreePath - Path where main branch is checked out\n\t * @throws Error if fast-forward is not possible\n\t */\n\tasync validateFastForwardPossible(mainBranch: string, branchName: string, mainWorktreePath: string): Promise<void> {\n\n\t\t// Step 1: Get merge-base between main and branch\n\t\tconst mergeBase = await executeGitCommand(['merge-base', mainBranch, branchName], {\n\t\t\tcwd: mainWorktreePath,\n\t\t})\n\n\t\t// Step 2: Get current HEAD of main\n\t\tconst mainHead = await executeGitCommand(['rev-parse', mainBranch], {\n\t\t\tcwd: mainWorktreePath,\n\t\t})\n\n\t\t// Step 3: Compare - they must match for fast-forward\n\t\tconst mergeBaseTrimmed = mergeBase.trim()\n\t\tconst mainHeadTrimmed = mainHead.trim()\n\n\t\tif (mergeBaseTrimmed !== mainHeadTrimmed) {\n\t\t\tthrow new Error(\n\t\t\t\t'Cannot perform fast-forward merge.\\n' +\n\t\t\t\t\t`The ${mainBranch} branch has moved forward since this branch was created.\\n` +\n\t\t\t\t\t`Merge base: ${mergeBaseTrimmed}\\n` +\n\t\t\t\t\t`Main HEAD: ${mainHeadTrimmed}\\n\\n` +\n\t\t\t\t\t'To fix this:\\n' +\n\t\t\t\t\t` 1. Rebase the branch on ${mainBranch}: git rebase ${mainBranch}\\n` +\n\t\t\t\t\t` 2. Or use: il finish to automatically rebase and merge\\n`\n\t\t\t)\n\t\t}\n\t}\n\n\t/**\n\t * Perform fast-forward only merge\n\t * Ports bash/merge-and-clean.sh lines 938-994\n\t *\n\t * @param branchName - Name of the branch to merge\n\t * @param worktreePath - Path to the worktree\n\t * @param options - Merge options (dryRun, force)\n\t * @throws Error if checkout, validation, or merge fails\n\t */\n\tasync performFastForwardMerge(\n\t\tbranchName: string,\n\t\tworktreePath: string,\n\t\toptions: MergeOptions = {}\n\t): Promise<void> {\n\t\tconst { dryRun = false, force = false } = options\n\n\t\tgetLogger().info('Starting fast-forward merge...')\n\n\t\t// Step 1: Get the merge target branch FIRST\n\t\t// For child looms, this will be the parent branch from metadata\n\t\t// For regular looms, this falls back to settings.mainBranch or 'main'\n\t\tconst mainBranch = await this.getMainBranch(worktreePath)\n\n\t\t// Step 2: Find where the merge target branch is checked out\n\t\t// CRITICAL: We must find the worktree for the MERGE TARGET, not settings.mainBranch\n\t\t// This fixes the child loom bug where we'd find the 'main' worktree instead of the parent branch worktree\n\t\tlet mainWorktreePath: string\n\t\tif (options.repoRoot) {\n\t\t\tmainWorktreePath = options.repoRoot\n\t\t} else {\n\t\t\ttry {\n\t\t\t\t// First try to find worktree with the exact merge target branch checked out\n\t\t\t\tmainWorktreePath = await findWorktreeForBranch(mainBranch, worktreePath)\n\t\t\t} catch {\n\t\t\t\t// Fallback: if no worktree has the branch checked out, use settings-based lookup\n\t\t\t\t// This handles edge cases like bare repos or detached HEAD states\n\t\t\t\tgetLogger().debug(`No worktree found for branch '${mainBranch}', falling back to settings-based lookup`)\n\t\t\t\tmainWorktreePath = await findMainWorktreePathWithSettings(worktreePath, this.settingsManager)\n\t\t\t}\n\t\t}\n\n\t\t// Step 3: No need to checkout - the merge target branch is already checked out in mainWorktreePath\n\t\tgetLogger().debug(`Using ${mainBranch} branch location: ${mainWorktreePath}`)\n\n\t\t// Step 4: Verify we're on the correct branch\n\t\tconst currentBranch = await executeGitCommand(['branch', '--show-current'], {\n\t\t\tcwd: mainWorktreePath,\n\t\t})\n\n\t\tif (currentBranch.trim() !== mainBranch) {\n\t\t\tthrow new Error(\n\t\t\t\t`Expected ${mainBranch} branch but found: ${currentBranch.trim()}\\n` +\n\t\t\t\t\t`At location: ${mainWorktreePath}\\n` +\n\t\t\t\t\t'This indicates the main worktree detection failed.'\n\t\t\t)\n\t\t}\n\n\t\t// Step 5: Validate fast-forward is possible\n\t\tawait this.validateFastForwardPossible(mainBranch, branchName, mainWorktreePath)\n\n\t\t// Step 6: Show commits to be merged\n\t\tconst commitsOutput = await executeGitCommand(['log', '--oneline', `${mainBranch}..${branchName}`], {\n\t\t\tcwd: mainWorktreePath,\n\t\t})\n\n\t\tconst commits = commitsOutput.trim()\n\n\t\t// If no commits, branch has no changes ahead of main\n\t\tif (!commits) {\n\t\t\tgetLogger().success(`Branch has no commits ahead of ${mainBranch}. No merge needed.`)\n\t\t\treturn\n\t\t}\n\n\t\t// Show commits that will be merged\n\t\tconst commitLines = commits.split('\\n')\n\t\tgetLogger().info(`Found ${commitLines.length} commit(s) to merge:`)\n\t\tcommitLines.forEach((commit) => getLogger().info(` ${commit}`))\n\n\t\t// Step 7: User confirmation (unless force mode or dry-run)\n\t\tif (!force && !dryRun) {\n\t\t\t// TODO: Implement interactive prompt for confirmation\n\t\t\t// For now, proceeding automatically (use --force to skip this message)\n\t\t\tgetLogger().info('Proceeding with fast-forward merge... (use --force to skip confirmations)')\n\t\t}\n\n\t\t// Step 8: Execute merge (unless dry-run)\n\t\tif (dryRun) {\n\t\t\tgetLogger().info(`[DRY RUN] Would execute: git merge --ff-only ${branchName}`)\n\t\t\tgetLogger().info(`[DRY RUN] This would merge ${commitLines.length} commit(s)`)\n\t\t\treturn\n\t\t}\n\n\t\t// Execute fast-forward merge\n\t\ttry {\n\t\t\tgetLogger().debug(`Executing fast-forward merge of ${branchName} into ${mainBranch} using cwd: ${mainWorktreePath}...`)\n\t\t\tawait executeGitCommand(['merge', '--ff-only', branchName], { cwd: mainWorktreePath })\n\t\t\tgetLogger().success(`Fast-forward merge completed! Merged ${commitLines.length} commit(s).`)\n\t\t} catch (error) {\n\t\t\tthrow new Error(\n\t\t\t\t`Fast-forward merge failed: ${error instanceof Error ? error.message : String(error)}\\n\\n` +\n\t\t\t\t\t'To recover:\\n' +\n\t\t\t\t\t' 1. Check merge status: git status\\n' +\n\t\t\t\t\t' 2. Abort merge if needed: git merge --abort\\n' +\n\t\t\t\t\t' 3. Verify branch is rebased: git rebase main\\n' +\n\t\t\t\t\t' 4. Try merge again: il finish'\n\t\t\t)\n\t\t}\n\t}\n\n\t/**\n\t * Helper: Detect conflicted files after failed rebase\n\t * @private\n\t */\n\tprivate async detectConflictedFiles(worktreePath: string): Promise<string[]> {\n\t\ttry {\n\t\t\tconst output = await executeGitCommand(['diff', '--name-only', '--diff-filter=U'], {\n\t\t\t\tcwd: worktreePath,\n\t\t\t})\n\n\t\t\treturn output\n\t\t\t\t.trim()\n\t\t\t\t.split('\\n')\n\t\t\t\t.filter((file) => file.length > 0)\n\t\t} catch {\n\t\t\t// If command fails, return empty array (might not be a conflict)\n\t\t\treturn []\n\t\t}\n\t}\n\n\t/**\n\t * Create a temporary WIP commit to preserve uncommitted changes during rebase\n\t * Stages all changes (tracked, untracked) using git add -A\n\t * Uses --no-verify to skip pre-commit hooks since this is a temporary internal commit\n\t * @param worktreePath - Path to the worktree\n\t * @returns The commit hash of the WIP commit\n\t * @private\n\t */\n\tprivate async createWipCommit(worktreePath: string): Promise<string> {\n\t\t// Stage all changes including untracked files\n\t\tawait executeGitCommand(['add', '-A'], { cwd: worktreePath })\n\n\t\t// Create WIP commit with distinctive message\n\t\t// Use --no-verify to skip pre-commit hooks - this is a temporary internal commit\n\t\tawait executeGitCommand(['commit', '--no-verify', '-m', 'WIP: Auto-stash for rebase'], { cwd: worktreePath })\n\n\t\t// Get and return the commit hash\n\t\tconst hash = await executeGitCommand(['rev-parse', 'HEAD'], { cwd: worktreePath })\n\t\treturn hash.trim()\n\t}\n\n\t/**\n\t * Restore uncommitted changes from WIP commit via soft reset\n\t * Logs warning but does not fail if soft reset fails (changes are safe in commit history)\n\t * @param worktreePath - Path to the worktree\n\t * @param wipCommitHash - Original WIP commit hash for verification logging\n\t * @private\n\t */\n\tprivate async restoreWipCommit(worktreePath: string, wipCommitHash: string): Promise<void> {\n\t\tgetLogger().info('Restoring uncommitted changes from WIP commit...')\n\n\t\ttry {\n\t\t\t// Soft reset to parent - changes become staged\n\t\t\tawait executeGitCommand(['reset', '--soft', 'HEAD~1'], { cwd: worktreePath })\n\n\t\t\t// Unstage files to restore to original working directory state\n\t\t\tawait executeGitCommand(['reset', 'HEAD'], { cwd: worktreePath })\n\n\t\t\tgetLogger().success('Restored uncommitted changes from WIP commit')\n\t\t} catch (error) {\n\t\t\t// Log warning but consider rebase successful - work is not lost\n\t\t\tgetLogger().warn(\n\t\t\t\t`Failed to restore WIP commit (${wipCommitHash}). ` +\n\t\t\t\t\t`Your changes are safe in the commit history. ` +\n\t\t\t\t\t`Manual recovery: git reset --soft HEAD~1`,\n\t\t\t\t{ error: error instanceof Error ? error.message : String(error) }\n\t\t\t)\n\t\t}\n\t}\n\n\t/**\n\t * Helper: Format conflict error message with manual resolution steps\n\t * @private\n\t */\n\tprivate formatConflictError(conflictedFiles: string[]): string {\n\t\tconst fileList = conflictedFiles.map((file) => ` • ${file}`).join('\\n')\n\n\t\treturn (\n\t\t\t'Rebase failed - merge conflicts detected in:\\n' +\n\t\t\tfileList +\n\t\t\t'\\n\\n' +\n\t\t\t'To resolve manually:\\n' +\n\t\t\t' 1. Fix conflicts in the files above\\n' +\n\t\t\t' 2. Stage resolved files: git add <files>\\n' +\n\t\t\t' 3. Continue rebase: git rebase --continue\\n' +\n\t\t\t' 4. Or abort rebase: git rebase --abort\\n' +\n\t\t\t' 5. Then re-run: il finish <issue-number>'\n\t\t)\n\t}\n\n\t/**\n\t * Attempt to resolve conflicts using Claude\n\t * Ports bash/merge-and-clean.sh lines 839-894\n\t *\n\t * @param worktreePath - Path to the worktree\n\t * @param conflictedFiles - List of files with conflicts\n\t * @returns true if conflicts resolved, false otherwise\n\t * @private\n\t */\n\tprivate async attemptClaudeConflictResolution(\n\t\tworktreePath: string,\n\t\tconflictedFiles: string[],\n\t\toptions: { jsonStream?: boolean } = {}\n\t): Promise<boolean> {\n\t\t// Check if Claude CLI is available\n\t\tconst isClaudeAvailable = await detectClaudeCli()\n\t\tif (!isClaudeAvailable) {\n\t\t\tgetLogger().debug('Claude CLI not available, skipping conflict resolution')\n\t\t\treturn false\n\t\t}\n\n\t\tgetLogger().info(`Launching Claude to resolve conflicts in ${conflictedFiles.length} file(s)...`)\n\n\t\t// Hard-coded prompt matching bash script line 844\n\t\t// No templates, no complexity - just the essential instruction\n\t\tconst systemPrompt =\n\t\t\t`Please help resolve the git rebase conflicts in this repository. ` +\n\t\t\t`Analyze the conflicted files, understand the changes from both branches, ` +\n\t\t\t`fix the conflicts, then run 'git add .' to stage the resolved files, ` +\n\t\t\t`and finally run 'git rebase --continue' to continue the rebase process. ` +\n\t\t\t`Once the issue is resolved, tell the user they can use /exit to continue with the process.`\n\n\t\tconst prompt =\n\t\t\t`Help me with this rebase please.`\n\n\t\t// Git commands to auto-approve during rebase conflict resolution\n\t\t// These are the essential commands Claude needs to analyze and resolve conflicts\n\t\t// Note: git reset and git checkout are intentionally excluded as they can be destructive\n\t\tconst rebaseAllowedTools = [\n\t\t\t'Bash(git status:*)',\n\t\t\t'Bash(git diff:*)',\n\t\t\t'Bash(git log:*)',\n\t\t\t'Bash(git add:*)',\n\t\t\t'Bash(git rebase:*)',\n\t\t\t'Bash(GIT_EDITOR=true git rebase:*)',\n\t\t]\n\n\t\ttry {\n\t\t\t// Launch Claude interactively in current terminal\n\t\t\t// User will interact directly with Claude to resolve conflicts\n\t\t\t// When jsonStream is true, run headless with stdout passthrough for JSONL streaming\n\t\t\tawait launchClaude(prompt, {\n\t\t\t\tappendSystemPrompt: systemPrompt,\n\t\t\t\taddDir: worktreePath,\n\t\t\t\theadless: options.jsonStream ? true : false,\n\t\t\t\t...(options.jsonStream && {\n\t\t\t\t\tpermissionMode: 'bypassPermissions' as const,\n\t\t\t\t\tpassthroughStdout: true,\n\t\t\t\t}),\n\t\t\t\tallowedTools: rebaseAllowedTools,\n\t\t\t\tnoSessionPersistence: true, // Utility operation - no session persistence needed\n\t\t\t})\n\n\t\t\t// After Claude interaction completes, check if conflicts resolved\n\t\t\tconst remainingConflicts = await this.detectConflictedFiles(worktreePath)\n\n\t\t\tif (remainingConflicts.length > 0) {\n\t\t\t\tgetLogger().warn(\n\t\t\t\t\t`Conflicts still exist in ${remainingConflicts.length} file(s) after Claude assistance`\n\t\t\t\t)\n\t\t\t\treturn false\n\t\t\t}\n\n\t\t\t// Check if rebase completed or still in progress\n\t\t\tconst rebaseInProgress = await this.isRebaseInProgress(worktreePath)\n\n\t\t\tif (rebaseInProgress) {\n\t\t\t\tgetLogger().warn('Rebase still in progress after Claude assistance')\n\t\t\t\treturn false\n\t\t\t}\n\n\t\t\treturn true\n\t\t} catch (error) {\n\t\t\tgetLogger().warn('Claude conflict resolution failed', {\n\t\t\t\terror: error instanceof Error ? error.message : String(error),\n\t\t\t})\n\t\t\treturn false\n\t\t}\n\t}\n\n\t/**\n\t * Check if a git rebase is currently in progress\n\t * Checks for .git/rebase-merge or .git/rebase-apply directories\n\t * Ports bash script logic from lines 853-856\n\t *\n\t * @param worktreePath - Path to the worktree\n\t * @returns true if rebase in progress, false otherwise\n\t * @private\n\t */\n\tprivate async isRebaseInProgress(worktreePath: string): Promise<boolean> {\n\t\tconst fs = await import('node:fs/promises')\n\t\tconst path = await import('node:path')\n\n\t\t// In git worktrees, .git is a file pointing to the actual git dir.\n\t\t// Use git rev-parse to resolve the real git directory.\n\t\tconst gitDir = (await executeGitCommand(\n\t\t\t['rev-parse', '--absolute-git-dir'],\n\t\t\t{ cwd: worktreePath }\n\t\t)).trim()\n\n\t\tconst rebaseMergePath = path.join(gitDir, 'rebase-merge')\n\t\tconst rebaseApplyPath = path.join(gitDir, 'rebase-apply')\n\n\t\t// Check for rebase-merge directory\n\t\ttry {\n\t\t\tawait fs.access(rebaseMergePath)\n\t\t\treturn true\n\t\t} catch {\n\t\t\t// Directory doesn't exist, continue checking\n\t\t}\n\n\t\t// Check for rebase-apply directory\n\t\ttry {\n\t\t\tawait fs.access(rebaseApplyPath)\n\t\t\treturn true\n\t\t} catch {\n\t\t\t// Directory doesn't exist\n\t\t}\n\n\t\treturn false\n\t}\n\n\t/**\n\t * Abort an in-progress rebase if one is detected\n\t * This handles cases where a previous rebase was interrupted (e.g., terminal closed,\n\t * Claude session ended, user manually stopped) and the worktree is left in a dirty state.\n\t * Since we're about to start a new rebase, the stale rebase state is irrelevant and safe to abort.\n\t *\n\t * @param worktreePath - Path to the worktree\n\t * @private\n\t */\n\tprivate async abortInProgressRebase(worktreePath: string): Promise<void> {\n\t\tconst rebaseInProgress = await this.isRebaseInProgress(worktreePath)\n\n\t\tif (!rebaseInProgress) {\n\t\t\treturn\n\t\t}\n\n\t\tgetLogger().warn('A rebase is already in progress. 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'npm run build' : `${packageManager} build`\n\t\tgetLogger().info(`[DRY RUN] Would run: ${command}`)\n\t\t\treturn {\n\t\t\t\tsuccess: true,\n\t\t\t\tskipped: false,\n\t\t\t\tduration: Date.now() - startTime,\n\t\t\t}\n\t\t}\n\n\t\t// Step 5: Execute build\n\tgetLogger().info('Running build...')\n\n\t\ttry {\n\t\t\tawait runScript('build', buildPath, [], { quiet: true })\n\t\tgetLogger().success('Build completed successfully')\n\n\t\t\treturn {\n\t\t\t\tsuccess: true,\n\t\t\t\tskipped: false,\n\t\t\t\tduration: Date.now() - startTime,\n\t\t\t}\n\t\t} catch {\n\t\t\t// Step 6: Throw detailed error on failure\n\t\t\tconst runCommand =\n\t\t\t\tpackageManager === 'npm' ? 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