@iceinvein/agent-skills 0.1.40 → 0.2.0

package/skills/magpie/scripts/path-filter.ts

@@ -1,6 +1,7 @@
 import { existsSync } from 'node:fs'
 import { readFile } from 'node:fs/promises'
 import { join } from 'node:path'
+import { chunkPath, splitRawChunks } from './diff-chunks.ts'
 
 export type PathFilterConfig = {
   exclude: string[]
@@ -43,6 +44,12 @@ export const DEFAULT_EXCLUDES: readonly string[] = [
   '**/*.min.js',
   '**/*.min.css',
   '**/*.map',
+  // Generated .NET / C#
+  '**/*.Designer.cs',
+  '**/*ModelSnapshot.cs',
+  '**/*.g.cs',
+  '**/*.g.i.cs',
+  '**/*.designer.vb',
   // Snapshot fixtures
   '**/*.snap',
   '**/__snapshots__/**',
@@ -113,11 +120,9 @@ export async function loadPathFilterConfig(cwd: string): Promise<PathFilterConfi
 export type ExcludedFile = { path: string; pattern: string }
 export type FilterDiffResult = { filtered: string; excluded: ExcludedFile[] }
 
-const FILE_HEADER = /^diff --git a\/(.+?) b\/(.+?)$/m
-
 export function filterDiff(rawDiff: string, config: PathFilterConfig): FilterDiffResult {
   if (!rawDiff) return { filtered: '', excluded: [] }
-  const chunks = rawDiff.split(/^(?=diff --git )/m)
+  const chunks = splitRawChunks(rawDiff)
   const kept: string[] = []
   const excluded: ExcludedFile[] = []
   for (const chunk of chunks) {
@@ -125,8 +130,7 @@ export function filterDiff(rawDiff: string, config: PathFilterConfig): FilterDif
       if (chunk.trim()) kept.push(chunk)
       continue
     }
-    const m = chunk.match(FILE_HEADER)
-    const path = m?.[2] ?? m?.[1]
+    const path = chunkPath(chunk)
     if (!path) {
       kept.push(chunk)
       continue

package/skills/magpie/scripts/refresh.ts

@@ -98,6 +98,13 @@ export async function refreshFindings(runDir: string): Promise<RefreshResult> {
 
   const diff = await readFile(join(runDir, 'diff.patch'), 'utf8').catch(() => '')
 
+  let diffSource: { source: 'gh' | 'git'; mergeBase: string | null } | undefined
+  try {
+    diffSource = (await Bun.file(join(runDir, 'diff-source.json')).json()) as typeof diffSource
+  } catch {
+    diffSource = undefined
+  }
+
   await renderFindingsToDisk(
     {
       findings,
@@ -108,6 +115,7 @@ export async function refreshFindings(runDir: string): Promise<RefreshResult> {
       diff,
       brief: brief ?? undefined,
       issues,
+      diffSource,
     },
     join(screenDir, 'findings.html'),
   )

package/skills/magpie/scripts/render-cmd.ts

@@ -48,12 +48,15 @@ function summarizeStages(log: Array<Record<string, unknown>>): {
     report: 'pending',
     post: 'pending',
   }
-  const specialistCounts: Record<string, number> = {
-    security: 0,
-    bugs: 0,
-    performance: 0,
-    'code-smells': 0,
-    architecture: 0,
+  // focus -> shard key -> count. Keyed by shard so a re-dispatched (focus, shard)
+  // pair replaces its own count rather than doubling it, while distinct shards
+  // of the same focus add up.
+  const perShard: Record<string, Record<string, number>> = {
+    security: {},
+    bugs: {},
+    performance: {},
+    'code-smells': {},
+    architecture: {},
   }
   for (const entry of log) {
     const stage = entry.stage as string
@@ -63,11 +66,16 @@ function summarizeStages(log: Array<Record<string, unknown>>): {
     if (stage in stages && status === 'error') stages[stage] = 'error'
     if (stage in stages && status === 'skipped') stages[stage] = 'skipped'
     if (stage === 'specialist' && typeof entry.focus === 'string') {
-      if (entry.focus in specialistCounts && typeof entry.findings === 'number') {
-        specialistCounts[entry.focus] = entry.findings
+      const bucket = perShard[entry.focus]
+      if (bucket && typeof entry.findings === 'number') {
+        bucket[String(entry.shard ?? 'all')] = entry.findings
       }
     }
   }
+  const specialistCounts: Record<string, number> = {}
+  for (const [focus, bucket] of Object.entries(perShard)) {
+    specialistCounts[focus] = Object.values(bucket).reduce((a, b) => a + b, 0)
+  }
   return { stages, specialistCounts }
 }
 
@@ -81,6 +89,11 @@ export async function runRender(runDir: string, page: 'progress' | 'findings'):
     })
     const log = await readLog(runDir)
     const summary = summarizeStages(log)
+    const manifest = await readJson<{ shards?: unknown[] }>(
+      join(runDir, 'shards', 'manifest.json'),
+      {},
+    )
+    const shardCount = Array.isArray(manifest.shards) ? manifest.shards.length : 1
     const outPath = await nextVersionedPath(screenDir, 'progress')
     await renderProgressToDisk(
       {
@@ -89,6 +102,7 @@ export async function runRender(runDir: string, page: 'progress' | 'findings'):
         branch: String(prJson.headRefName ?? '?'),
         stages: summary.stages as never,
         specialistCounts: summary.specialistCounts,
+        shardCount,
       },
       outPath,
     )
@@ -124,9 +138,14 @@ export async function runRender(runDir: string, page: 'progress' | 'findings'):
   // is simply omitted.
   const brief = parseBrief(await readJson<unknown>(join(runDir, 'brief.json'), null)) ?? undefined
   const issues = parseClosingIssues(prJson)
+  const diffSource =
+    (await readJson<{ source: 'gh' | 'git'; mergeBase: string | null } | null>(
+      join(runDir, 'diff-source.json'),
+      null,
+    )) ?? undefined
   const outPath = await nextVersionedPath(screenDir, 'findings')
   await renderFindingsToDisk(
-    { findings, postStatus, runId: basename(runDir), pr, files, diff, brief, issues },
+    { findings, postStatus, runId: basename(runDir), pr, files, diff, brief, issues, diffSource },
     outPath,
   )
   return 0

package/skills/magpie/scripts/render-findings.ts

@@ -59,6 +59,8 @@ export type RenderFindingsInput = {
   issues?: BriefIssue[]
   /** Shiki highlighter, prepared by the caller. */
   highlighter: Highlighter
+  /** Where diff.patch came from. Absent means gh, which needs no note. */
+  diffSource?: { source: 'gh' | 'git'; mergeBase: string | null }
 }
 
 function esc(s: string): string {
@@ -86,13 +88,21 @@ function brandBlock(): string {
 
 function prHeader(input: RenderFindingsInput): string {
   const pr = input.pr
+  const src = input.diffSource
+  const diffNote =
+    src?.source === 'git'
+      ? `<span class="diff-source" title="gh pr diff could not serve this PR, so the diff was rebuilt from the local clone">diff from local clone${
+          src.mergeBase ? ` at <code>${esc(src.mergeBase.slice(0, 12))}</code>` : ''
+        }</span>`
+      : ''
   const prMeta = pr
     ? `<div class="pr-meta">
         <span class="pr-number">PR #${pr.number}</span>
         <span class="pr-branch">${esc(pr.branch)}</span>
         <code>${esc(pr.headSha.slice(0, 12))}</code>
+        ${diffNote}
       </div>`
-    : `<div class="pr-meta"></div>`
+    : `<div class="pr-meta">${diffNote}</div>`
   const total = input.findings.length
   return `<header class="pr-header">
     ${brandBlock()}

package/skills/magpie/scripts/render-progress.ts

@@ -41,6 +41,8 @@ export type RenderProgressInput = {
   branch: string
   stages: Record<StageId, StageStatus>
   specialistCounts: Record<string, number>
+  /** Shard count from shards/manifest.json. Absent or 1 means unsharded. */
+  shardCount?: number
 }
 
 function esc(s: string): string {
@@ -82,7 +84,10 @@ function progressPane(input: RenderProgressInput): string {
   const cur = current(input.stages)
   let lead: string
   if (cur.status === 'running') {
-    lead = STAGE_NOW_DOING[cur.id]
+    lead =
+      cur.id === 'specialists' && (input.shardCount ?? 1) > 1
+        ? `Five reviewers across ${input.shardCount} shards`
+        : STAGE_NOW_DOING[cur.id]
   } else if (cur.status === 'error') {
     lead = `${STAGE_NOW_DOING[cur.id]} stalled`
   } else if (cur.status === 'pending') {

package/skills/magpie/scripts/setup-cmd.ts

@@ -4,6 +4,7 @@ import { fetchPr } from './gh.ts'
 import { buildIncrementalContext, findPreviousRun } from './incremental.ts'
 import { filterDiff, loadPathFilterConfig } from './path-filter.ts'
 import { type Deps, defaultDeps, preflight, renderInstallHint } from './preflight.ts'
+import { shardDiff } from './shard.ts'
 import { detectMissingTests } from './tests-check.ts'
 import { createWorktree } from './worktree.ts'
 
@@ -47,6 +48,7 @@ export async function runSetup(input: RunSetupInput): Promise<number> {
 
   const fetched = await fetchPr({
     ghBin: deps.gh,
+    gitBin: deps.git,
     prNumber: input.prNumber,
     runDir: input.runDir,
     cwd: input.repoPath,
@@ -57,10 +59,31 @@ export async function runSetup(input: RunSetupInput): Promise<number> {
     await cleanup(input.runDir)
     return 4
   }
-  await logLine(input.runDir, { stage: 'fetch-pr', status: 'done' })
+  await logLine(input.runDir, {
+    stage: 'fetch-pr',
+    status: 'done',
+    source: fetched.source,
+    ...(fetched.mergeBase ? { mergeBase: fetched.mergeBase } : {}),
+  })
+  // Sidecar so the report can say where the diff came from without re-parsing
+  // log.jsonl, the same way incremental.json carries the incremental context.
+  await writeFile(
+    join(input.runDir, 'diff-source.json'),
+    `${JSON.stringify({ source: fetched.source, mergeBase: fetched.mergeBase ?? null }, null, 2)}\n`,
+  )
 
   await applyPathFilter(input.runDir, input.repoPath)
 
+  try {
+    await runShard(input.runDir)
+  } catch (err) {
+    const message = err instanceof Error ? err.message : String(err)
+    await logLine(input.runDir, { stage: 'shard', status: 'error', error: message })
+    process.stderr.write(`magpie: ${message}\n`)
+    await cleanup(input.runDir)
+    return 6
+  }
+
   await runTestsCheck(input.runDir)
 
   await detectIncrementalReview(input.runDir, input.prNumber)
@@ -90,7 +113,9 @@ async function cleanup(runDir: string): Promise<void> {
     'pr.json',
     'diff.patch',
     'diff.full.patch',
+    'diff-source.json',
     'excluded-files.json',
+    'shards',
     'incremental.json',
     'findings',
     'screen',
@@ -100,6 +125,18 @@ async function cleanup(runDir: string): Promise<void> {
   }
 }
 
+async function runShard(runDir: string): Promise<void> {
+  const manifest = await shardDiff(runDir)
+  await logLine(runDir, {
+    stage: 'shard',
+    status: 'done',
+    shards: manifest.shards.length,
+    budget: manifest.budget,
+    files: manifest.totalFiles,
+    lines: manifest.totalLines,
+  })
+}
+
 async function runTestsCheck(runDir: string): Promise<void> {
   const diff = await Bun.file(join(runDir, 'diff.patch')).text()
   const findings = detectMissingTests(diff)

package/skills/magpie/scripts/shard.ts

@@ -0,0 +1,171 @@
+import { mkdir, readdir, rm, writeFile } from 'node:fs/promises'
+import { join } from 'node:path'
+import { type FileChunk, splitFileChunks } from './diff-chunks.ts'
+
+export const DEFAULT_SHARD_BUDGET = 6000
+export const DEFAULT_SHARD_MAX_FILES = 80
+
+export type ShardEntry = { id: number; path: string; files: string[]; lines: number }
+export type ShardManifest = {
+  budget: number
+  maxFiles: number
+  totalFiles: number
+  totalLines: number
+  shards: ShardEntry[]
+}
+
+/**
+ * The directory a file is grouped under, capped at two segments. Cohesion is
+ * not cosmetic: the architecture and code-smells focuses look for duplication,
+ * boundary violations, and shotgun surgery, and splitting a module across
+ * shards hides exactly those.
+ */
+export function groupKey(path: string): string {
+  const parts = path.split('/')
+  if (parts.length <= 1) return '.'
+  return parts.slice(0, Math.min(2, parts.length - 1)).join('/')
+}
+
+export function planShards(chunks: FileChunk[], budget: number, maxFiles: number): FileChunk[][] {
+  const groups = new Map<string, FileChunk[]>()
+  for (const c of chunks) {
+    const key = groupKey(c.path)
+    const existing = groups.get(key)
+    if (existing) existing.push(c)
+    else groups.set(key, [c])
+  }
+
+  const shards: FileChunk[][] = []
+  let current: FileChunk[] = []
+  let currentLines = 0
+  const flush = () => {
+    if (current.length > 0) {
+      shards.push(current)
+      current = []
+      currentLines = 0
+    }
+  }
+
+  for (const members of groups.values()) {
+    const groupLines = members.reduce((n, c) => n + c.lines, 0)
+    // Start a fresh shard rather than straddle a group across a boundary, when
+    // the whole group could fit on its own.
+    if (
+      current.length > 0 &&
+      (currentLines + groupLines > budget || current.length + members.length > maxFiles)
+    ) {
+      flush()
+    }
+    for (const c of members) {
+      if (
+        current.length > 0 &&
+        (currentLines + c.lines > budget || current.length + 1 > maxFiles)
+      ) {
+        flush()
+      }
+      current.push(c)
+      currentLines += c.lines
+    }
+  }
+  flush()
+  return shards
+}
+
+/** Read `$RUN_DIR/diff.patch`, tolerating only its absence. A missing
+ *  diff.patch means "nothing to shard"; anything else (permission error,
+ *  disk error, EISDIR, ...) is a genuine failure and must propagate rather
+ *  than silently turn into an empty manifest. */
+async function readDiffPatch(runDir: string): Promise<string> {
+  try {
+    return await Bun.file(join(runDir, 'diff.patch')).text()
+  } catch (err) {
+    const code = err && typeof err === 'object' && 'code' in err ? err.code : undefined
+    if (code === 'ENOENT') return ''
+    throw err
+  }
+}
+
+/** Delete `shard-<n>.patch` files left by an earlier split. Re-splitting 7 shards
+ *  into 4 would otherwise leave `shard-5.patch` .. `shard-7.patch` on disk: the
+ *  manifest is authoritative for dispatch, but a stale patch makes the directory
+ *  claim coverage the manifest does not have, and a resume that reads shard ids
+ *  off disk would review a file set that no longer matches its id. Only the shard
+ *  patches are touched: `manifest.json` stays in place until it is overwritten at
+ *  the end (so there is never a window with no manifest), and `diff.patch` lives
+ *  outside this directory and is what a single-shard manifest points at. */
+async function clearStaleShardPatches(shardsDir: string): Promise<void> {
+  let entries: string[]
+  try {
+    entries = await readdir(shardsDir)
+  } catch {
+    return
+  }
+  for (const name of entries) {
+    if (/^shard-\d+\.patch$/.test(name)) await rm(join(shardsDir, name), { force: true })
+  }
+}
+
+/**
+ * Split `$RUN_DIR/diff.patch` into budgeted shards. `diff.patch` is never
+ * modified: shards are views over it, which is what keeps the critic's diff
+ * excerpts, dedupe's evidence check, and the report's rendering working
+ * unchanged.
+ *
+ * Re-splitting an already-sharded run invalidates any
+ * `findings/<focus>.shard-<n>.json` from the previous split: the same shard id
+ * now names a different file set. Stage 4's resume rule keys on those files, so
+ * the caller must delete them before re-dispatching.
+ */
+export async function shardDiff(
+  runDir: string,
+  opts: { budget?: number; maxFiles?: number } = {},
+): Promise<ShardManifest> {
+  const budget = opts.budget ?? DEFAULT_SHARD_BUDGET
+  const maxFiles = opts.maxFiles ?? DEFAULT_SHARD_MAX_FILES
+  const diff = await readDiffPatch(runDir)
+  const chunks = splitFileChunks(diff)
+  const totalLines = chunks.reduce((n, c) => n + c.lines, 0)
+  const shardsDir = join(runDir, 'shards')
+  await clearStaleShardPatches(shardsDir)
+  await mkdir(shardsDir, { recursive: true })
+
+  const planned = planShards(chunks, budget, maxFiles)
+  let shards: ShardEntry[]
+  if (planned.length === 0) {
+    shards = []
+  } else if (planned.length === 1) {
+    // Single-shard passthrough: stage 4 takes the same path it took on 0.9.0.
+    const only = planned[0] ?? []
+    shards = [
+      {
+        id: 1,
+        path: 'diff.patch',
+        files: only.map((c) => c.path),
+        lines: only.reduce((n, c) => n + c.lines, 0),
+      },
+    ]
+  } else {
+    shards = []
+    for (const [i, members] of planned.entries()) {
+      const id = i + 1
+      const rel = `shards/shard-${id}.patch`
+      await writeFile(join(runDir, rel), members.map((c) => c.text).join(''))
+      shards.push({
+        id,
+        path: rel,
+        files: members.map((c) => c.path),
+        lines: members.reduce((n, c) => n + c.lines, 0),
+      })
+    }
+  }
+
+  const manifest: ShardManifest = {
+    budget,
+    maxFiles,
+    totalFiles: chunks.length,
+    totalLines,
+    shards,
+  }
+  await writeFile(join(shardsDir, 'manifest.json'), `${JSON.stringify(manifest, null, 2)}\n`)
+  return manifest
+}

package/skills/magpie/scripts/status-cmd.ts

@@ -1,7 +1,10 @@
 import { readFile } from 'node:fs/promises'
 import { join } from 'node:path'
 
-const ORDER = [
+/** The resume ladder. Exported so `skill-lint` can assert that the diagnostic
+ *  stage names SKILL.md logs (`filter`, `tests-check`, `shard-coverage`, ...) stay
+ *  out of it: a diagnostic entry that lands on this list would move `next`. */
+export const ORDER = [
   'setup',
   'context',
   'specialists',

package/skills/magpie/skill.json

@@ -1,7 +1,7 @@
 {
   "name": "magpie",
-  "version": "0.9.0",
-  "description": "Interactive PR review pipeline. Runs five parallel specialist subagents (security, bugs, performance, code-smells, architecture), dedupes findings, applies a critic rubric, peer-reviews via codex exec (falling back to a Claude second opinion when codex is unavailable), and serves an interactive HTML report for selecting findings to post via gh. Bundles a Bun CLI installed onto PATH via the skill's postinstall step. Use when the user asks to review a GitHub pull request.",
+  "version": "0.10.0",
+  "description": "Interactive PR review pipeline. Runs five parallel specialist subagents (security, bugs, performance, code-smells, architecture), dedupes findings, applies a critic rubric, peer-reviews via codex exec (falling back to a Claude second opinion when codex is unavailable), and serves an interactive HTML report for selecting findings to post via gh. Bundles a Bun CLI installed onto PATH via the skill's postinstall step. Use when the user asks to review a GitHub pull request. Splits oversized diffs into budgeted shards and rebuilds the diff from the local clone when gh pr diff refuses it.",
   "author": "iceinvein",
   "type": "prompt",
   "tools": [

package/skills/magpie/templates/styles.css

@@ -183,6 +183,11 @@ button {
   color: var(--ink);
 }
 
+.diff-source {
+  font-size: 0.78rem;
+  opacity: 0.7;
+}
+
 .header-spacer {
   flex: 1;
 }

package/skills/migrate/README.md

@@ -0,0 +1,194 @@
+# migrate
+
+Source-agnostic legacy migration mapping. `migrate` walks a legacy codebase
+through probe, enumerate, seam, extract, parity, and queue, building an
+auditable requirements ledger with mandatory citations instead of a
+self-reported one. It enumerates the legacy surface from two independent
+directions per lens, derives a capability seam empirically rather than by
+guesswork, extracts cited functional requirements, plans parity against the
+source, and routes every ambiguity to a batch decision queue for a human to
+adjudicate. The coverage arithmetic, citation resolution, and phase ordering
+are enforced by a bundled Bun CLI instead of being self-reported. Two more
+phases, adjudicate and handoff, complete the walkthrough but ship no CLI verb
+yet; see the phases table below.
+
+## Using it
+
+Invoke `/migrate` in a target repo that is a git working copy, pointed at a
+read-only checkout of the legacy source. The skill (`SKILL.md`) is the
+walkthrough: it names, phase by phase, what to read, what to dispatch, and
+what `migrate` command closes that phase out. Each phase's manual under
+`references/phases/` carries the actual judgment calls, loaded only when
+that phase is current so a run never pays for prose it does not need yet.
+
+### The phases
+
+| # | Phase | Manual | What it produces |
+|---|---|---|---|
+| 0 | Probe | `references/phases/probe.md` | `.migrate/config.toml` (detected source stack, basis, target profile) and `.migrate/parity-basis.md` (the detection evidence, hand-written) |
+| 1 | Enumerate | `references/phases/enumerate.md` | `elements.jsonl` and a lens census record per surface |
+| 2 | Seam | `references/phases/seam.md` | `capabilities.jsonl`, `seam.json`, `seam.md`: the capability partition and its evidence |
+| 3 | Extract | `references/phases/extract.md` | `requirements.jsonl`, attribute/rule-sweep/closer census records, terminal element dispositions |
+| 4 | Parity | `references/phases/parity.md` | `deltas.jsonl` and a parity plan on every non-queued requirement |
+| 5 | Queue | `references/phases/queue.md` | Queue items carrying evidence, options and a recommendation for anything ambiguous |
+| 6 | Adjudicate | none yet | No verb ships in this version; `migrate status` and `migrate queue list` are the terminus |
+| 7 | Handoff | none yet | Same as adjudicate: no verb yet |
+
+A run in this version stops at the queue. `adjudicate` and `handoff` have no
+CLI verbs to complete them, so `migrate check --phase queue` is the
+practical terminus: its exit 0 is what "done, for now" means. Plain `migrate
+check` gates every phase through `handoff` and cannot pass yet for the same
+reason. `references/run-ops.md` covers what applies across every phase
+rather than any one of them: subagent dispatch, the batch-checkpoint
+discipline, and what happens when two agents contend for the store lock.
+
+### Recipes
+
+Enumerate reads the source stack `probe` detected and looks for a matching
+file in `references/recipes/`, one file per stack family
+(`references/recipes/aspnet.md` covers `aspnet-webforms`, `aspnet-mvc`, and
+`aspnet-webapi`). A recipe answers one narrow question: for each declared
+surface type, at least two independent directions for enumerating it and the
+probe command that realises each one. Nothing else; the lens contract itself
+lives once in `enumerate.md`, and a recipe does not restate it, carry
+classification rules, or gate anything.
+
+If no file matches the detected stack, that is contract-only mode: a
+supported path, not a degraded one. The enumerating agent derives its own two
+directions per surface, and the census gates them exactly as it would a
+recipe's.
+
+**Adding a stack is one new file in `references/recipes/` and no edit
+anywhere else.** `SKILL.md`, the phase manuals, and the CLI never name an
+individual stack; they only read `[source].stack` and look in that
+directory. See `references/recipes/README.md` for the exact file shape.
+
+## Checking as you go
+
+```
+migrate check --phase <current-phase>
+```
+
+bounds the run-state gate at that phase; the other nine gates always read
+the whole store, so a coverage or census gap past your current phase still
+fails on its own gate regardless of `--phase`. Citations are checked by
+default; pass `--no-citations` to skip that gate.
+
+## Fixtures
+
+Two fixtures, each with a committed `GROUND-TRUTH.md`, drive the skill end to
+end:
+
+- **`fixtures/tiny-express/`**: a small Express/Node app, twelve elements
+  across all eight default surfaces. Its stack (`express`) matches no file
+  in `references/recipes/`, so it proves the contract-only path: enumerate
+  deriving its own two directions per surface with no recipe to lean on, and
+  the census gating them exactly the same as it would a recipe's.
+- **`fixtures/tiny-webforms/`**: a small ASP.NET Web Forms app, sixteen
+  elements across the same eight surfaces. Its stack (`aspnet-webforms`)
+  matches `references/recipes/aspnet.md`, so it is that recipe's first run
+  against committed code, not just the throwaway trees it was written
+  against.
+
+`scripts/__tests__/e2e-express.test.ts` and
+`scripts/__tests__/e2e-webforms.test.ts` copy the respective fixture to a
+temp directory and drive the real CLI as a subprocess, probe through queue,
+through `init`, `import`, `census`, `phase`, `queue add`, `queue list`, and
+`check`, reconciling every row against the fixture's ground truth. Both end at
+`migrate check --phase queue` on exit 0, and then show plain `migrate check`
+failing on exactly `adjudicate` and `handoff`, the two phases with no verb in
+this version.
+
+Both show gates in both directions. Failing before they pass: the mid-run check
+after enumerate names the three closer records extract has not written yet, and
+the `deltas` gate names the sanctioned difference each run files unsigned
+before an owner signs it. Failing after they pass: each run closes green, then
+mutates the store (nulling every parity plan, then removing an element row) and
+asserts the gate that should catch it does.
+
+## Documentation
+
+- **[docs/reference.md](docs/reference.md)** is what you need to drive the CLI:
+  the batch-file and census formats with worked examples, the row schemas and
+  their grammars, what each of the ten gates enforces, and the exit-code
+  convention. Ships with the installed skill.
+- **[docs/architecture.md](docs/architecture.md)** is for working on the skill
+  itself: the module map, the rule that decides what belongs in the CLI rather
+  than the prompt, how to add a gate or a surface type, the testing
+  conventions, and the known limits.
+
+## Store layout
+
+The store lives at `.migrate/` in the target repo and is committed.
+
+| Path | Shape | Holds |
+|---|---|---|
+| `.migrate/config.toml` | declarative | source pointer and scope, detected source stack, target profile, surface-type set, closer set, handoff adapter |
+| `.migrate/elements.jsonl` | rows | surface ledger |
+| `.migrate/requirements.jsonl` | rows | functional requirements and their dispositions |
+| `.migrate/capabilities.jsonl` | rows | the seam partition |
+| `.migrate/seam.json` | object | run-level seam metadata: validators run, modularity, status |
+| `.migrate/deltas.jsonl` | rows | sanctioned delta catalog |
+| `.migrate/census.jsonl` | rows | one accounting record per lens run |
+| `.migrate/phases.json` | object | per-phase status, batches, resume pointers |
+| `.migrate/seam.md` | prose | validator scripts and their raw output |
+| `.migrate/parity-basis.md` | prose | runnable-versus-source-only detection evidence |
+| `.migrate/queue/q-<slug>.md` | prose | evidence, options, recommendation |
+| `.migrate/.env` | secrets | runtime-lens credentials, gitignored |
+| `docs/migrate/*.md` | generated | human-readable views, written by `migrate report` |
+
+## CLI
+
+| Command | Does |
+|---|---|
+| `migrate init --source <path> --scope <text> --name <target>` | Writes `.migrate/config.toml` |
+| `migrate import <elements\|reqs\|deltas> <batch.json>` | Validated bulk append to the store |
+| `migrate census <record.json>` | Records a lens accounting record |
+| `migrate phase [<name>] [--status <s>]` | Prints phase state, or sets one phase's status to any value you name |
+| `migrate queue add <file.md>` | Adds a queue item |
+| `migrate queue list [--open]` | Lists queue items, severity first |
+| `migrate queue show <id>` | Prints one queue item |
+| `migrate check [--phase <p>] [--no-citations] [--leaks]` | Runs the gates |
+| `migrate status` | Phase state, counts, resume pointer |
+| `migrate reset --phase <phase>` | Clears one phase's derived rows and returns it to `pending` |
+| `migrate report [--out <dir>]` | Renders markdown views |
+
+Run `migrate --help` for the same list from the CLI itself.
+
+**Four commands write a phase's status, each to a different extent.** `phase
+--status <s>` is the only one that writes any value you ask for, and the only
+one whose whole purpose is that write. `reset --phase <p>` also writes it
+directly, but only ever to `pending`, and it empties that phase's `batches`
+list at the same time. `import` and `census` touch `phases.json` incidentally,
+each moving a phase to `running` (unless it is already `done`) when they record
+a batch. Nothing else writes it at all.
+
+A lock failure on `import`, `census`, `phase --status`, or `reset` exits `3`;
+pass `--force-unlock` once you have confirmed no other agent is actually
+writing.
+
+## Install
+
+```
+bunx @iceinvein/agent-skills install migrate -g
+```
+
+This skill ships in two parts: the prompt (`SKILL.md`) and a companion Bun
+CLI (`bin` + `scripts`). The agent-skills installer writes both into
+`~/.claude/skills/migrate/` and then runs the bundled `install.sh` as a
+postinstall step, which symlinks `bin/migrate` onto your PATH (preferring
+`/usr/local/bin`, falling back to `~/.local/bin`). Removing the skill with
+`agent-skills remove migrate -g` runs `uninstall.sh` first to undo the PATH
+symlink.
+
+If you cloned this repo and want to run from source, you can also invoke
+`./install.sh` directly: it does the PATH-link step against the local source
+tree.
+
+## Development
+
+```
+bun test              # Run all tests
+bun run lint          # Biome check
+bun run typecheck     # tsc --noEmit
+```