@ibm/ibmi-mcp-server 0.4.1 → 0.4.3

package/dist/cli/commands/completion.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"completion.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/completion.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAkNpC;;GAEG;AACH,wBAAgB,yBAAyB,CAAC,OAAO,EAAE,OAAO,GAAG,IAAI,CAwBhE"}
+{"version":3,"file":"completion.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/completion.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AA2OpC;;GAEG;AACH,wBAAgB,yBAAyB,CAAC,OAAO,EAAE,OAAO,GAAG,IAAI,CAwBhE"}

package/dist/cli/commands/completion.js

@@ -5,6 +5,7 @@
 import { ExitCode } from "../utils/exit-codes.js";
 /** Top-level commands. */
 const COMMANDS = [
+    "config",
     "system",
     "schemas",
     "tables",
@@ -17,6 +18,8 @@ const COMMANDS = [
     "toolsets",
     "completion",
 ];
+/** Config subcommands. */
+const CONFIG_SUBCOMMANDS = ["show"];
 /** System subcommands. */
 const SYSTEM_SUBCOMMANDS = [
     "list",
@@ -50,12 +53,13 @@ function generateBash() {
 # Add to ~/.bashrc: eval "$(ibmi completion bash)"
 
 _ibmi_completions() {
-  local cur prev commands system_commands global_opts format_choices
+  local cur prev commands config_commands system_commands global_opts format_choices
   COMPREPLY=()
   cur="\${COMP_WORDS[COMP_CWORD]}"
   prev="\${COMP_WORDS[COMP_CWORD-1]}"
 
   commands="${COMMANDS.join(" ")}"
+  config_commands="${CONFIG_SUBCOMMANDS.join(" ")}"
   system_commands="${SYSTEM_SUBCOMMANDS.join(" ")}"
   global_opts="${GLOBAL_OPTIONS.join(" ")}"
   format_choices="${FORMAT_CHOICES.join(" ")}"
@@ -84,6 +88,12 @@ _ibmi_completions() {
     return 0
   fi
 
+  # Complete config subcommands
+  if [[ "\${COMP_WORDS[1]}" == "config" && \${COMP_CWORD} -eq 2 ]]; then
+    COMPREPLY=( $(compgen -W "\${config_commands}" -- "\${cur}") )
+    return 0
+  fi
+
   # Complete system subcommands
   if [[ "\${COMP_WORDS[1]}" == "system" && \${COMP_CWORD} -eq 2 ]]; then
     COMPREPLY=( $(compgen -W "\${system_commands}" -- "\${cur}") )
@@ -115,12 +125,16 @@ function generateZsh() {
 # Add to ~/.zshrc: eval "$(ibmi completion zsh)"
 
 _ibmi() {
-  local -a commands system_commands format_choices global_opts
+  local -a commands config_commands system_commands format_choices global_opts
 
   commands=(
 ${COMMANDS.map((c) => `    '${c}:${c} command'`).join("\n")}
   )
 
+  config_commands=(
+${CONFIG_SUBCOMMANDS.map((c) => `    '${c}:${c}'`).join("\n")}
+  )
+
   system_commands=(
 ${SYSTEM_SUBCOMMANDS.map((c) => `    '${c}:${c}'`).join("\n")}
   )
@@ -151,6 +165,9 @@ ${SYSTEM_SUBCOMMANDS.map((c) => `    '${c}:${c}'`).join("\n")}
       ;;
     args)
       case $words[1] in
+        config)
+          _describe -t config_commands 'config subcommands' config_commands
+          ;;
         system)
           _describe -t system_commands 'system subcommands' system_commands
           ;;
@@ -178,6 +195,10 @@ function generateFish() {
     for (const cmd of COMMANDS) {
         lines.push(`complete -c ibmi -n '__fish_use_subcommand' -a '${cmd}' -d '${cmd} command'`);
     }
+    lines.push("", "# Config subcommands");
+    for (const sub of CONFIG_SUBCOMMANDS) {
+        lines.push(`complete -c ibmi -n '__fish_seen_subcommand_from config' -a '${sub}' -d '${sub}'`);
+    }
     lines.push("", "# System subcommands");
     for (const sub of SYSTEM_SUBCOMMANDS) {
         lines.push(`complete -c ibmi -n '__fish_seen_subcommand_from system' -a '${sub}' -d '${sub}'`);

package/dist/cli/commands/completion.js.map

@@ -1 +1 @@
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+{"version":3,"file":"completion.js","sourceRoot":"","sources":["../../../src/cli/commands/completion.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAGH,OAAO,EAAE,QAAQ,EAAE,MAAM,wBAAwB,CAAC;AAElD,0BAA0B;AAC1B,MAAM,QAAQ,GAAG;IACf,QAAQ;IACR,QAAQ;IACR,SAAS;IACT,QAAQ;IACR,SAAS;IACT,SAAS;IACT,UAAU;IACV,KAAK;IACL,MAAM;IACN,OAAO;IACP,UAAU;IACV,YAAY;CACb,CAAC;AAEF,0BAA0B;AAC1B,MAAM,kBAAkB,GAAG,CAAC,MAAM,CAAC,CAAC;AAEpC,0BAA0B;AAC1B,MAAM,kBAAkB,GAAG;IACzB,MAAM;IACN,MAAM;IACN,KAAK;IACL,QAAQ;IACR,SAAS;IACT,MAAM;IACN,aAAa;CACd,CAAC;AAEF,sBAAsB;AACtB,MAAM,cAAc,GAAG;IACrB,UAAU;IACV,UAAU;IACV,OAAO;IACP,UAAU;IACV,SAAS;IACT,UAAU;IACV,SAAS;IACT,YAAY;IACZ,WAAW;IACX,QAAQ;CACT,CAAC;AAEF,sBAAsB;AACtB,MAAM,cAAc,GAAG,CAAC,OAAO,EAAE,MAAM,EAAE,KAAK,EAAE,UAAU,CAAC,CAAC;AAE5D;;GAEG;AACH,SAAS,YAAY;IACnB,OAAO;;;;;;;;;cASK,QAAQ,CAAC,IAAI,CAAC,GAAG,CAAC;qBACX,kBAAkB,CAAC,IAAI,CAAC,GAAG,CAAC;qBAC5B,kBAAkB,CAAC,IAAI,CAAC,GAAG,CAAC;iBAChC,cAAc,CAAC,IAAI,CAAC,GAAG,CAAC;oBACrB,cAAc,CAAC,IAAI,CAAC,GAAG,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CAoD3C,CAAC;AACF,CAAC;AAED;;GAEG;AACH,SAAS,WAAW;IAClB,OAAO;;;;;;;;EAQP,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,QAAQ,CAAC,IAAI,CAAC,WAAW,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC;;;;EAIzD,kBAAkB,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,QAAQ,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC;;;;EAI3D,kBAAkB,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,QAAQ,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CAyC5D,CAAC;AACF,CAAC;AAED;;GAEG;AACH,SAAS,YAAY;IACnB,MAAM,KAAK,GAAG;QACZ,4BAA4B;QAC5B,qDAAqD;QACrD,EAAE;QACF,uCAAuC;QACvC,qBAAqB;QACrB,EAAE;QACF,sBAAsB;KACvB,CAAC;IAEF,KAAK,MAAM,GAAG,IAAI,QAAQ,EAAE,CAAC;QAC3B,KAAK,CAAC,IAAI,CACR,mDAAmD,GAAG,SAAS,GAAG,WAAW,CAC9E,CAAC;IACJ,CAAC;IAED,KAAK,CAAC,IAAI,CAAC,EAAE,EAAE,sBAAsB,CAAC,CAAC;IACvC,KAAK,MAAM,GAAG,IAAI,kBAAkB,EAAE,CAAC;QACrC,KAAK,CAAC,IAAI,CACR,gEAAgE,GAAG,SAAS,GAAG,GAAG,CACnF,CAAC;IACJ,CAAC;IAED,KAAK,CAAC,IAAI,CAAC,EAAE,EAAE,sBAAsB,CAAC,CAAC;IACvC,KAAK,MAAM,GAAG,IAAI,kBAAkB,EAAE,CAAC;QACrC,KAAK,CAAC,IAAI,CACR,gEAAgE,GAAG,SAAS,GAAG,GAAG,CACnF,CAAC;IACJ,CAAC;IAED,KAAK,CAAC,IAAI,CAAC,EAAE,EAAE,kBAAkB,CAAC,CAAC;IACnC,KAAK,CAAC,IAAI,CACR,uDAAuD,EACvD,+EAA+E,EAC/E,6CAA6C,EAC7C,0DAA0D,EAC1D,8DAA8D,EAC9D,4DAA4D,EAC5D,gEAAgE,EAChE,0DAA0D,CAC3D,CAAC;IAEF,OAAO,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,GAAG,IAAI,CAAC;AACjC,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,yBAAyB,CAAC,OAAgB;IACxD,OAAO;SACJ,OAAO,CAAC,oBAAoB,CAAC;SAC7B,WAAW,CAAC,oDAAoD,CAAC;SACjE,MAAM,CAAC,CAAC,KAAc,EAAE,EAAE;QACzB,MAAM,MAAM,GAAG,KAAK,EAAE,WAAW,EAAE,IAAI,WAAW,EAAE,CAAC;QAErD,QAAQ,MAAM,EAAE,CAAC;YACf,KAAK,MAAM;gBACT,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,YAAY,EAAE,CAAC,CAAC;gBACrC,MAAM;YACR,KAAK,KAAK;gBACR,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,WAAW,EAAE,CAAC,CAAC;gBACpC,MAAM;YACR,KAAK,MAAM;gBACT,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,YAAY,EAAE,CAAC,CAAC;gBACrC,MAAM;YACR;gBACE,OAAO,CAAC,MAAM,CAAC,KAAK,CAClB,kBAAkB,MAAM,gCAAgC,CACzD,CAAC;gBACF,OAAO,CAAC,QAAQ,GAAG,QAAQ,CAAC,KAAK,CAAC;QACtC,CAAC;IACH,CAAC,CAAC,CAAC;AACP,CAAC;AAED;;GAEG;AACH,SAAS,WAAW;IAClB,MAAM,KAAK,GAAG,OAAO,CAAC,GAAG,CAAC,KAAK,IAAI,EAAE,CAAC;IACtC,IAAI,KAAK,CAAC,QAAQ,CAAC,KAAK,CAAC;QAAE,OAAO,KAAK,CAAC;IACxC,IAAI,KAAK,CAAC,QAAQ,CAAC,MAAM,CAAC;QAAE,OAAO,MAAM,CAAC;IAC1C,OAAO,MAAM,CAAC;AAChB,CAAC"}

package/dist/cli/commands/config.d.ts

@@ -0,0 +1,11 @@
+/**
+ * @fileoverview `ibmi config` commands for inspecting CLI configuration.
+ * Shows merged configuration with per-setting origin tracking.
+ * @module cli/commands/config
+ */
+import { Command } from "commander";
+/**
+ * Register `ibmi config` subcommands.
+ */
+export declare function registerConfigCommand(program: Command): void;
+//# sourceMappingURL=config.d.ts.map

package/dist/cli/commands/config.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"config.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/config.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AA0DpC;;GAEG;AACH,wBAAgB,qBAAqB,CAAC,OAAO,EAAE,OAAO,GAAG,IAAI,CAgF5D"}

package/dist/cli/commands/config.js

@@ -0,0 +1,124 @@
+/**
+ * @fileoverview `ibmi config` commands for inspecting CLI configuration.
+ * Shows merged configuration with per-setting origin tracking.
+ * @module cli/commands/config
+ */
+import { loadConfig, loadConfigLayers, getUserConfigPath, } from "../config/index.js";
+import { renderOutput, renderError } from "../formatters/output.js";
+import { ExitCode } from "../utils/exit-codes.js";
+import { getFormat } from "../utils/command-helpers.js";
+/**
+ * Determine which config layer a top-level key (`default` or `format`) came from.
+ * Project layer takes precedence if it defines the key.
+ */
+function findOrigin(layers, key) {
+    // Check project first (higher precedence)
+    for (const layer of [...layers].reverse()) {
+        if (layer.config && layer.config[key] !== undefined) {
+            return layer.scope;
+        }
+    }
+    return "unknown";
+}
+/**
+ * Determine which config layer a system definition came from.
+ * Project layer takes precedence for same-named systems.
+ */
+function findSystemOrigin(layers, name) {
+    for (const layer of [...layers].reverse()) {
+        if (layer.config && name in layer.config.systems) {
+            return layer.scope;
+        }
+    }
+    return "unknown";
+}
+/** Environment variables checked for config overrides. */
+const CONFIG_ENV_VARS = ["IBMI_SYSTEM", "DB2i_HOST", "DB2i_USER", "DB2i_PASS"];
+/** Env vars whose values must be masked in output. */
+const SENSITIVE_ENV_VARS = new Set(["DB2i_PASS"]);
+/** Return active environment variable overrides that affect config resolution. */
+function getActiveEnvOverrides() {
+    const overrides = [];
+    for (const name of CONFIG_ENV_VARS) {
+        const value = process.env[name];
+        if (value) {
+            overrides.push({ name, value: SENSITIVE_ENV_VARS.has(name) ? "****" : value });
+        }
+    }
+    return overrides;
+}
+/**
+ * Register `ibmi config` subcommands.
+ */
+export function registerConfigCommand(program) {
+    const config = program
+        .command("config")
+        .description("Inspect CLI configuration")
+        .action(() => {
+        config.outputHelp();
+    });
+    config
+        .command("show")
+        .description("Show active configuration with file origins")
+        .action((_opts, cmd) => {
+        const format = getFormat(cmd);
+        try {
+            const layers = loadConfigLayers();
+            const merged = loadConfig();
+            const data = [];
+            // File layer status
+            const userPath = getUserConfigPath();
+            const userLayer = layers.find((l) => l.scope === "user");
+            data.push({
+                PROPERTY: "[user]",
+                VALUE: userLayer?.exists ? "loaded" : "not found",
+                SOURCE: userPath,
+            });
+            const projectLayer = layers.find((l) => l.scope === "project");
+            if (projectLayer) {
+                data.push({
+                    PROPERTY: "[project]",
+                    VALUE: "loaded",
+                    SOURCE: projectLayer.path,
+                });
+            }
+            // Top-level settings
+            if (merged.default) {
+                data.push({
+                    PROPERTY: "default",
+                    VALUE: merged.default,
+                    SOURCE: findOrigin(layers, "default"),
+                });
+            }
+            if (merged.format) {
+                data.push({
+                    PROPERTY: "format",
+                    VALUE: merged.format,
+                    SOURCE: findOrigin(layers, "format"),
+                });
+            }
+            // Systems
+            for (const [name, sys] of Object.entries(merged.systems)) {
+                data.push({
+                    PROPERTY: `systems.${name}`,
+                    VALUE: `${sys.host}:${sys.port} (${sys.user})`,
+                    SOURCE: findSystemOrigin(layers, name),
+                });
+            }
+            // Active env overrides
+            for (const override of getActiveEnvOverrides()) {
+                data.push({
+                    PROPERTY: override.name,
+                    VALUE: override.value,
+                    SOURCE: "environment",
+                });
+            }
+            renderOutput(data, format, { rowCount: data.length });
+        }
+        catch (err) {
+            renderError(err instanceof Error ? err : new Error(String(err)), format);
+            process.exitCode = ExitCode.GENERAL;
+        }
+    });
+}
+//# sourceMappingURL=config.js.map

package/dist/cli/commands/config.js.map

@@ -0,0 +1 @@
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package/dist/cli/config/index.d.ts

@@ -3,7 +3,8 @@
  * @module cli/config
  */
 export { CliConfigSchema, SystemConfigSchema, validateConfig } from "./schema.js";
-export { loadConfig, saveUserConfig, upsertSystem, removeSystem, setDefaultSystem, getProjectConfigPath, getUserConfigPath, } from "./loader.js";
+export { loadConfig, loadConfigLayers, saveUserConfig, upsertSystem, removeSystem, setDefaultSystem, getProjectConfigPath, getUserConfigPath, } from "./loader.js";
+export type { ConfigLayer } from "./loader.js";
 export { resolveSystem } from "./resolver.js";
 export { expandEnvVars, promptPassword, resolvePassword, } from "./credentials.js";
 export type { CliConfig, SystemConfig, ResolvedSystem, OutputFormat, GlobalOptions, } from "./types.js";

package/dist/cli/config/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/cli/config/index.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,eAAe,EAAE,kBAAkB,EAAE,cAAc,EAAE,MAAM,aAAa,CAAC;AAClF,OAAO,EACL,UAAU,EACV,cAAc,EACd,YAAY,EACZ,YAAY,EACZ,gBAAgB,EAChB,oBAAoB,EACpB,iBAAiB,GAClB,MAAM,aAAa,CAAC;AACrB,OAAO,EAAE,aAAa,EAAE,MAAM,eAAe,CAAC;AAC9C,OAAO,EACL,aAAa,EACb,cAAc,EACd,eAAe,GAChB,MAAM,kBAAkB,CAAC;AAC1B,YAAY,EACV,SAAS,EACT,YAAY,EACZ,cAAc,EACd,YAAY,EACZ,aAAa,GACd,MAAM,YAAY,CAAC"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/cli/config/index.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,eAAe,EAAE,kBAAkB,EAAE,cAAc,EAAE,MAAM,aAAa,CAAC;AAClF,OAAO,EACL,UAAU,EACV,gBAAgB,EAChB,cAAc,EACd,YAAY,EACZ,YAAY,EACZ,gBAAgB,EAChB,oBAAoB,EACpB,iBAAiB,GAClB,MAAM,aAAa,CAAC;AACrB,YAAY,EAAE,WAAW,EAAE,MAAM,aAAa,CAAC;AAC/C,OAAO,EAAE,aAAa,EAAE,MAAM,eAAe,CAAC;AAC9C,OAAO,EACL,aAAa,EACb,cAAc,EACd,eAAe,GAChB,MAAM,kBAAkB,CAAC;AAC1B,YAAY,EACV,SAAS,EACT,YAAY,EACZ,cAAc,EACd,YAAY,EACZ,aAAa,GACd,MAAM,YAAY,CAAC"}

package/dist/cli/config/index.js

@@ -3,7 +3,7 @@
  * @module cli/config
  */
 export { CliConfigSchema, SystemConfigSchema, validateConfig } from "./schema.js";
-export { loadConfig, saveUserConfig, upsertSystem, removeSystem, setDefaultSystem, getProjectConfigPath, getUserConfigPath, } from "./loader.js";
+export { loadConfig, loadConfigLayers, saveUserConfig, upsertSystem, removeSystem, setDefaultSystem, getProjectConfigPath, getUserConfigPath, } from "./loader.js";
 export { resolveSystem } from "./resolver.js";
 export { expandEnvVars, promptPassword, resolvePassword, } from "./credentials.js";
 //# sourceMappingURL=index.js.map

package/dist/cli/config/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/cli/config/index.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,eAAe,EAAE,kBAAkB,EAAE,cAAc,EAAE,MAAM,aAAa,CAAC;AAClF,OAAO,EACL,UAAU,EACV,cAAc,EACd,YAAY,EACZ,YAAY,EACZ,gBAAgB,EAChB,oBAAoB,EACpB,iBAAiB,GAClB,MAAM,aAAa,CAAC;AACrB,OAAO,EAAE,aAAa,EAAE,MAAM,eAAe,CAAC;AAC9C,OAAO,EACL,aAAa,EACb,cAAc,EACd,eAAe,GAChB,MAAM,kBAAkB,CAAC"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/cli/config/index.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,eAAe,EAAE,kBAAkB,EAAE,cAAc,EAAE,MAAM,aAAa,CAAC;AAClF,OAAO,EACL,UAAU,EACV,gBAAgB,EAChB,cAAc,EACd,YAAY,EACZ,YAAY,EACZ,gBAAgB,EAChB,oBAAoB,EACpB,iBAAiB,GAClB,MAAM,aAAa,CAAC;AAErB,OAAO,EAAE,aAAa,EAAE,MAAM,eAAe,CAAC;AAC9C,OAAO,EACL,aAAa,EACb,cAAc,EACd,eAAe,GAChB,MAAM,kBAAkB,CAAC"}

package/dist/cli/config/loader.d.ts

@@ -16,6 +16,22 @@ export declare function getUserConfigPath(): string;
  * @returns The merged, validated, and env-expanded configuration.
  */
 export declare function loadConfig(): CliConfig;
+/** Metadata about a single configuration layer (user or project). */
+export interface ConfigLayer {
+    /** Which config layer this represents. */
+    scope: "user" | "project";
+    /** Absolute path to the config file. */
+    path: string;
+    /** Whether the config file exists on disk. */
+    exists: boolean;
+    /** Parsed config, or null if the file doesn't exist. */
+    config: CliConfig | null;
+}
+/**
+ * Load individual config layers without merging.
+ * Used by `ibmi config show` to display per-setting origin information.
+ */
+export declare function loadConfigLayers(): ConfigLayer[];
 /**
  * Save a config to the user-level config file.
  */

package/dist/cli/config/loader.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"loader.d.ts","sourceRoot":"","sources":["../../../src/cli/config/loader.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAQH,OAAO,KAAK,EAAE,SAAS,EAAE,YAAY,EAAE,MAAM,YAAY,CAAC;AAgC1D,8FAA8F;AAC9F,wBAAgB,oBAAoB,IAAI,MAAM,CAE7C;AAED,2CAA2C;AAC3C,wBAAgB,iBAAiB,IAAI,MAAM,CAE1C;AAkED;;;;;GAKG;AACH,wBAAgB,UAAU,IAAI,SAAS,CAsBtC;AAED;;GAEG;AACH,wBAAgB,cAAc,CAAC,MAAM,EAAE,SAAS,GAAG,IAAI,CAatD;AAED;;GAEG;AACH,wBAAgB,YAAY,CAC1B,IAAI,EAAE,MAAM,EACZ,MAAM,EAAE,YAAY,GACnB,IAAI,CAgBN;AAED;;;GAGG;AACH,wBAAgB,YAAY,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAsBlD;AAED;;GAEG;AACH,wBAAgB,gBAAgB,CAAC,IAAI,EAAE,MAAM,GAAG,IAAI,CAkBnD"}
+{"version":3,"file":"loader.d.ts","sourceRoot":"","sources":["../../../src/cli/config/loader.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAQH,OAAO,KAAK,EAAE,SAAS,EAAE,YAAY,EAAE,MAAM,YAAY,CAAC;AAsC1D,8FAA8F;AAC9F,wBAAgB,oBAAoB,IAAI,MAAM,CAE7C;AAED,2CAA2C;AAC3C,wBAAgB,iBAAiB,IAAI,MAAM,CAE1C;AAkED;;;;;GAKG;AACH,wBAAgB,UAAU,IAAI,SAAS,CAsBtC;AAED,qEAAqE;AACrE,MAAM,WAAW,WAAW;IAC1B,0CAA0C;IAC1C,KAAK,EAAE,MAAM,GAAG,SAAS,CAAC;IAC1B,wCAAwC;IACxC,IAAI,EAAE,MAAM,CAAC;IACb,8CAA8C;IAC9C,MAAM,EAAE,OAAO,CAAC;IAChB,wDAAwD;IACxD,MAAM,EAAE,SAAS,GAAG,IAAI,CAAC;CAC1B;AAED;;;GAGG;AACH,wBAAgB,gBAAgB,IAAI,WAAW,EAAE,CAuBhD;AAED;;GAEG;AACH,wBAAgB,cAAc,CAAC,MAAM,EAAE,SAAS,GAAG,IAAI,CAatD;AAED;;GAEG;AACH,wBAAgB,YAAY,CAC1B,IAAI,EAAE,MAAM,EACZ,MAAM,EAAE,YAAY,GACnB,IAAI,CAgBN;AAED;;;GAGG;AACH,wBAAgB,YAAY,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAsBlD;AAED;;GAEG;AACH,wBAAgB,gBAAgB,CAAC,IAAI,EAAE,MAAM,GAAG,IAAI,CAkBnD"}

package/dist/cli/config/loader.js

@@ -18,12 +18,18 @@ const PROJECT_CONFIG_DIR = ".ibmi";
 const USER_CONFIG_DIR = path.join(homedir(), ".ibmi");
 /**
  * Walk up from cwd to find the nearest .ibmi/config.yaml.
- * Stops at the filesystem root. Returns null if not found.
+ * Stops at the home directory boundary (user config lives there)
+ * and at the filesystem root. Returns null if not found.
  */
 function findProjectConfigPath() {
-    let dir = process.cwd();
+    let dir = path.resolve(process.cwd());
     const root = path.parse(dir).root;
+    const home = path.resolve(homedir());
     while (true) {
+        // ~/.ibmi/config.yaml is the user config — never treat it as project config
+        if (dir === home) {
+            return null;
+        }
         const candidate = path.join(dir, PROJECT_CONFIG_DIR, CONFIG_FILE);
         if (existsSync(candidate)) {
             return candidate;
@@ -127,6 +133,31 @@ export function loadConfig() {
     }
     return expandSystemEnvVars(config);
 }
+/**
+ * Load individual config layers without merging.
+ * Used by `ibmi config show` to display per-setting origin information.
+ */
+export function loadConfigLayers() {
+    const userPath = getUserConfigPath();
+    const projectPath = findProjectConfigPath();
+    const layers = [
+        {
+            scope: "user",
+            path: userPath,
+            exists: existsSync(userPath),
+            config: loadConfigFile(userPath),
+        },
+    ];
+    if (projectPath) {
+        layers.push({
+            scope: "project",
+            path: projectPath,
+            exists: true,
+            config: loadConfigFile(projectPath),
+        });
+    }
+    return layers;
+}
 /**
  * Save a config to the user-level config file.
  */

package/dist/cli/config/loader.js.map

@@ -1 +1 @@
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package/dist/cli/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/cli/index.ts"],"names":[],"mappings":";AAEA;;;;;GAKG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AA0CpC;;GAEG;AACH,wBAAgB,aAAa,IAAI,OAAO,CAmCvC"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/cli/index.ts"],"names":[],"mappings":";AAEA;;;;;GAKG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AA2CpC;;GAEG;AACH,wBAAgB,aAAa,IAAI,OAAO,CAoCvC"}

package/dist/cli/index.js

@@ -9,6 +9,7 @@ import { Command } from "commander";
 import { readFileSync } from "fs";
 import path from "path";
 import { fileURLToPath } from "url";
+import { registerConfigCommand } from "./commands/config.js";
 import { registerSystemCommand } from "./commands/system.js";
 import { registerSchemasCommand } from "./commands/schemas.js";
 import { registerTablesCommand } from "./commands/tables.js";
@@ -63,6 +64,7 @@ export function createProgram() {
         .option("--watch <seconds>", "Re-run command at interval (seconds)")
         .option("--output <path>", "Write output to file instead of stdout");
     // Register command groups
+    registerConfigCommand(program);
     registerSystemCommand(program);
     registerSchemasCommand(program);
     registerTablesCommand(program);

package/dist/cli/index.js.map

@@ -1 +1 @@
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package/dist/ibmi-mcp-server/tools/executeSql.tool.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"executeSql.tool.d.ts","sourceRoot":"","sources":["../../../src/ibmi-mcp-server/tools/executeSql.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AA2BxB;;GAEG;AACH,MAAM,WAAW,oBAAoB;IACnC,OAAO,EAAE,OAAO,CAAC;IACjB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,QAAQ,CAAC,EAAE;QACT,QAAQ,CAAC,EAAE,OAAO,CAAC;QACnB,cAAc,CAAC,EAAE,MAAM,CAAC;KACzB,CAAC;CACH;AAmBD;;;GAGG;AACH,wBAAgB,uBAAuB,CACrC,MAAM,EAAE,OAAO,CAAC,oBAAoB,CAAC,GACpC,IAAI,CA0BN;AAED;;;GAGG;AACH,wBAAgB,mBAAmB,IAAI,oBAAoB,CAE1D;AAED;;;GAGG;AACH,wBAAgB,mBAAmB,IAAI,OAAO,CAE7C;AAgWD,eAAO,MAAM,cAAc;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAczB,CAAC"}
+{"version":3,"file":"executeSql.tool.d.ts","sourceRoot":"","sources":["../../../src/ibmi-mcp-server/tools/executeSql.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AA2BxB;;GAEG;AACH,MAAM,WAAW,oBAAoB;IACnC,OAAO,EAAE,OAAO,CAAC;IACjB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,QAAQ,CAAC,EAAE;QACT,QAAQ,CAAC,EAAE,OAAO,CAAC;QACnB,cAAc,CAAC,EAAE,MAAM,CAAC;KACzB,CAAC;CACH;AAmBD;;;GAGG;AACH,wBAAgB,uBAAuB,CACrC,MAAM,EAAE,OAAO,CAAC,oBAAoB,CAAC,GACpC,IAAI,CA0BN;AAED;;;GAGG;AACH,wBAAgB,mBAAmB,IAAI,oBAAoB,CAE1D;AAED;;;GAGG;AACH,wBAAgB,mBAAmB,IAAI,OAAO,CAE7C;AAgWD,eAAO,MAAM,cAAc;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAiBzB,CAAC"}

package/dist/ibmi-mcp-server/tools/executeSql.tool.js

@@ -355,6 +355,8 @@ export const executeSqlTool = defineTool({
         destructiveHint: !(toolConfig.security?.readOnly ?? true), // Destructive if not read-only
         openWorldHint: !(toolConfig.security?.readOnly ?? true), // Open world if not read-only
     },
-    enabled: () => toolConfig.enabled, // Use function to dynamically check enabled state
+    enabled: () => toolConfig.enabled ||
+        config.ibmi_enableExecuteSql ||
+        config.ibmi_enableDefaultTools, // Check both toolConfig and live config for CLI override support
 });
 //# sourceMappingURL=executeSql.tool.js.map

package/dist/ibmi-mcp-server/tools/executeSql.tool.js.map

@@ -1 +1 @@
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package/dist/ibmi-mcp-server/tools/index.d.ts

@@ -8,16 +8,24 @@
  * @module tools/definitions
  */
 /**
- * Array of all tool definitions for automated registration.
+ * Returns all tool definitions for automated registration.
+ *
+ * This is a function (not a constant) because the config values it depends on
+ * (e.g., ibmi_enableDefaultTools) may be set by CLI argument overrides that
+ * run after ES module evaluation. A top-level constant would capture the
+ * pre-override defaults and miss CLI flags like --builtin-tools.
+ *
+ * The default text-to-SQL toolset is enabled via IBMI_ENABLE_DEFAULT_TOOLS
+ * or --builtin-tools CLI flag (default: false). These tools provide schema
+ * discovery and query validation for LLM workflows:
+ *   list_schemas → list_tables_in_schema → get_table_columns → get_related_objects → validate_query → execute_sql
  *
  * To add a new tool:
  * 1. Create the tool definition file (e.g., myTool.tool.ts)
  * 2. Import it above
- * 3. Add it to this array
- *
- * The ToolRegistry will automatically register all tools in this array.
+ * 3. Add it to the returned array
  */
-export declare const allToolDefinitions: (import("../../mcp-server/tools/utils/types.js").ToolDefinition<{
+export declare function getAllToolDefinitions(): (import("../../mcp-server/tools/utils/types.js").ToolDefinition<{
     object_name: import("zod").ZodString;
     object_library: import("zod").ZodDefault<import("zod").ZodString>;
     object_type: import("zod").ZodDefault<import("zod").ZodEnum<["ALIAS", "CONSTRAINT", "FUNCTION", "INDEX", "MASK", "PERMISSION", "PROCEDURE", "SCHEMA", "SEQUENCE", "TABLE", "TRIGGER", "TYPE", "VARIABLE", "VIEW", "XSR"]>>;
@@ -177,12 +185,15 @@ export declare const allToolDefinitions: (import("../../mcp-server/tools/utils/t
         columns: import("zod").ZodObject<{
             valid: import("zod").ZodArray<import("zod").ZodString, "many">;
             invalid: import("zod").ZodArray<import("zod").ZodString, "many">;
+            skipped: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString, "many">>;
         }, "strip", import("zod").ZodTypeAny, {
             valid: string[];
             invalid: string[];
+            skipped?: string[] | undefined;
         }, {
             valid: string[];
             invalid: string[];
+            skipped?: string[] | undefined;
         }>;
         routines: import("zod").ZodObject<{
             valid: import("zod").ZodArray<import("zod").ZodString, "many">;
@@ -198,6 +209,7 @@ export declare const allToolDefinitions: (import("../../mcp-server/tools/utils/t
         columns: {
             valid: string[];
             invalid: string[];
+            skipped?: string[] | undefined;
         };
         tables: {
             valid: string[];
@@ -211,6 +223,7 @@ export declare const allToolDefinitions: (import("../../mcp-server/tools/utils/t
         columns: {
             valid: string[];
             invalid: string[];
+            skipped?: string[] | undefined;
         };
         tables: {
             valid: string[];

package/dist/ibmi-mcp-server/tools/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/ibmi-mcp-server/tools/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AA0BH;;;;;;;;;GASG;AACH,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;KAI9B,CAAC"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/ibmi-mcp-server/tools/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAWH;;;;;;;;;;;;;;;;;GAiBG;AACH,wBAAgB,qBAAqB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;MAgBpC"}

package/dist/ibmi-mcp-server/tools/index.js

@@ -16,32 +16,37 @@ import { getTableColumnsTool } from "./getTableColumns.tool.js";
 import { validateQueryTool } from "./validateQuery.tool.js";
 import { getRelatedObjectsTool } from "./getRelatedObjects.tool.js";
 /**
- * Default text-to-SQL toolset, enabled via IBMI_ENABLE_DEFAULT_TOOLS or --builtin-tools CLI flag (default: false).
- * These tools provide schema discovery and query validation for LLM workflows:
+ * Returns all tool definitions for automated registration.
+ *
+ * This is a function (not a constant) because the config values it depends on
+ * (e.g., ibmi_enableDefaultTools) may be set by CLI argument overrides that
+ * run after ES module evaluation. A top-level constant would capture the
+ * pre-override defaults and miss CLI flags like --builtin-tools.
+ *
+ * The default text-to-SQL toolset is enabled via IBMI_ENABLE_DEFAULT_TOOLS
+ * or --builtin-tools CLI flag (default: false). These tools provide schema
+ * discovery and query validation for LLM workflows:
  *   list_schemas → list_tables_in_schema → get_table_columns → get_related_objects → validate_query → execute_sql
- */
-const defaultTools = config.ibmi_enableDefaultTools
-    ? [
-        listSchemasTool,
-        listTablesInSchemaTool,
-        getTableColumnsTool,
-        getRelatedObjectsTool,
-        validateQueryTool,
-    ]
-    : [];
-/**
- * Array of all tool definitions for automated registration.
  *
  * To add a new tool:
  * 1. Create the tool definition file (e.g., myTool.tool.ts)
  * 2. Import it above
- * 3. Add it to this array
- *
- * The ToolRegistry will automatically register all tools in this array.
+ * 3. Add it to the returned array
  */
-export const allToolDefinitions = [
-    executeSqlTool, // Controlled by IBMI_ENABLE_EXECUTE_SQL or IBMI_ENABLE_DEFAULT_TOOLS
-    generateSqlTool, // Always available (describe_sql_object)
-    ...defaultTools, // Conditionally included default toolset
-];
+export function getAllToolDefinitions() {
+    const defaultTools = config.ibmi_enableDefaultTools
+        ? [
+            listSchemasTool,
+            listTablesInSchemaTool,
+            getTableColumnsTool,
+            getRelatedObjectsTool,
+            validateQueryTool,
+        ]
+        : [];
+    return [
+        executeSqlTool, // Controlled by IBMI_ENABLE_EXECUTE_SQL or IBMI_ENABLE_DEFAULT_TOOLS
+        generateSqlTool, // Always available (describe_sql_object)
+        ...defaultTools, // Conditionally included default toolset
+    ];
+}
 //# sourceMappingURL=index.js.map

package/dist/ibmi-mcp-server/tools/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/ibmi-mcp-server/tools/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,EAAE,MAAM,EAAE,MAAM,uBAAuB,CAAC;AAC/C,OAAO,EAAE,cAAc,EAAE,MAAM,sBAAsB,CAAC;AACtD,OAAO,EAAE,eAAe,EAAE,MAAM,uBAAuB,CAAC;AACxD,OAAO,EAAE,eAAe,EAAE,MAAM,uBAAuB,CAAC;AACxD,OAAO,EAAE,sBAAsB,EAAE,MAAM,8BAA8B,CAAC;AACtE,OAAO,EAAE,mBAAmB,EAAE,MAAM,2BAA2B,CAAC;AAChE,OAAO,EAAE,iBAAiB,EAAE,MAAM,yBAAyB,CAAC;AAC5D,OAAO,EAAE,qBAAqB,EAAE,MAAM,6BAA6B,CAAC;AAEpE;;;;;;;;;;;;;;;;;GAiBG;AACH,MAAM,UAAU,qBAAqB;IACnC,MAAM,YAAY,GAAG,MAAM,CAAC,uBAAuB;QACjD,CAAC,CAAC;YACE,eAAe;YACf,sBAAsB;YACtB,mBAAmB;YACnB,qBAAqB;YACrB,iBAAiB;SAClB;QACH,CAAC,CAAC,EAAE,CAAC;IAEP,OAAO;QACL,cAAc,EAAE,qEAAqE;QACrF,eAAe,EAAE,yCAAyC;QAC1D,GAAG,YAAY,EAAE,yCAAyC;KAC3D,CAAC;AACJ,CAAC"}

package/dist/ibmi-mcp-server/tools/validateQuery.tool.d.ts

@@ -37,12 +37,15 @@ declare const ValidateQueryOutputSchema: z.ZodObject<{
         columns: z.ZodObject<{
             valid: z.ZodArray<z.ZodString, "many">;
             invalid: z.ZodArray<z.ZodString, "many">;
+            skipped: z.ZodOptional<z.ZodArray<z.ZodString, "many">>;
         }, "strip", z.ZodTypeAny, {
             valid: string[];
             invalid: string[];
+            skipped?: string[] | undefined;
         }, {
             valid: string[];
             invalid: string[];
+            skipped?: string[] | undefined;
         }>;
         routines: z.ZodObject<{
             valid: z.ZodArray<z.ZodString, "many">;
@@ -58,6 +61,7 @@ declare const ValidateQueryOutputSchema: z.ZodObject<{
         columns: {
             valid: string[];
             invalid: string[];
+            skipped?: string[] | undefined;
         };
         tables: {
             valid: string[];
@@ -71,6 +75,7 @@ declare const ValidateQueryOutputSchema: z.ZodObject<{
         columns: {
             valid: string[];
             invalid: string[];
+            skipped?: string[] | undefined;
         };
         tables: {
             valid: string[];
@@ -108,6 +113,7 @@ declare const ValidateQueryOutputSchema: z.ZodObject<{
         columns: {
             valid: string[];
             invalid: string[];
+            skipped?: string[] | undefined;
         };
         tables: {
             valid: string[];
@@ -132,6 +138,7 @@ declare const ValidateQueryOutputSchema: z.ZodObject<{
         columns: {
             valid: string[];
             invalid: string[];
+            skipped?: string[] | undefined;
         };
         tables: {
             valid: string[];
@@ -167,12 +174,15 @@ export declare const validateQueryTool: import("../../mcp-server/tools/utils/typ
         columns: z.ZodObject<{
             valid: z.ZodArray<z.ZodString, "many">;
             invalid: z.ZodArray<z.ZodString, "many">;
+            skipped: z.ZodOptional<z.ZodArray<z.ZodString, "many">>;
         }, "strip", z.ZodTypeAny, {
             valid: string[];
             invalid: string[];
+            skipped?: string[] | undefined;
         }, {
             valid: string[];
             invalid: string[];
+            skipped?: string[] | undefined;
         }>;
         routines: z.ZodObject<{
             valid: z.ZodArray<z.ZodString, "many">;
@@ -188,6 +198,7 @@ export declare const validateQueryTool: import("../../mcp-server/tools/utils/typ
         columns: {
             valid: string[];
             invalid: string[];
+            skipped?: string[] | undefined;
         };
         tables: {
             valid: string[];
@@ -201,6 +212,7 @@ export declare const validateQueryTool: import("../../mcp-server/tools/utils/typ
         columns: {
             valid: string[];
             invalid: string[];
+            skipped?: string[] | undefined;
         };
         tables: {
             valid: string[];

package/dist/ibmi-mcp-server/tools/validateQuery.tool.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"validateQuery.tool.d.ts","sourceRoot":"","sources":["../../../src/ibmi-mcp-server/tools/validateQuery.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAGxB,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,sBAAsB,CAAC;AAI3D,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,uCAAuC,CAAC;AA6CxE,QAAA,MAAM,wBAAwB;;;;;;EAQ5B,CAAC;AA+BH,QAAA,MAAM,yBAAyB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EA0B7B,CAAC;AAEH,KAAK,kBAAkB,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,wBAAwB,CAAC,CAAC;AACnE,KAAK,mBAAmB,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,yBAAyB,CAAC,CAAC;AA+NrE,wBAAsB,kBAAkB,CACtC,MAAM,EAAE,kBAAkB,EAC1B,UAAU,EAAE,cAAc,EAC1B,WAAW,EAAE,UAAU,GACtB,OAAO,CAAC,mBAAmB,CAAC,CA6I9B;AA+ED,eAAO,MAAM,iBAAiB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAc5B,CAAC"}

package/dist/ibmi-mcp-server/tools/validateQuery.tool.js

@@ -43,6 +43,10 @@ const ObjectValidationSchema = z.object({
         invalid: z
             .array(z.string())
             .describe("Columns not found in any referenced table."),
+        skipped: z
+            .array(z.string())
+            .optional()
+            .describe("Columns skipped during validation (e.g., unqualified columns from UDTFs or CTE aliases that cannot be verified against the system catalog)."),
     }),
     routines: z.object({
         valid: z
@@ -267,17 +271,29 @@ export async function validateQueryLogic(params, appContext, _sdkContext) {
                         validateTables(refs.tables, appContext),
                         validateRoutines(refs.routines, appContext),
                     ]);
-                    // CTE aliases and UDTF output columns appear as unqualified COLUMNs.
-                    // When virtual columns are possible, only validate qualified columns
-                    // (where PARSE_STATEMENT resolved SCHEMA + NAME to a physical table).
+                    // CTE aliases and UDTF output columns appear as unqualified COLUMNs
+                    // in PARSE_STATEMENT results. These cannot be verified against
+                    // SYSCOLUMNS, so we skip them but report which columns were skipped.
                     const hasVirtualColumns = refs.hasVirtualColumns || CTE_REGEX.test(params.sql_statement);
+                    let skippedColumns;
                     const columnsToValidate = hasVirtualColumns
                         ? refs.columns.filter((c) => c.schema && c.tableName)
                         : refs.columns;
+                    if (hasVirtualColumns) {
+                        const skipped = refs.columns.filter((c) => !c.schema || !c.tableName);
+                        if (skipped.length > 0) {
+                            skippedColumns = [
+                                ...new Set(skipped.map((c) => c.columnName)),
+                            ];
+                        }
+                    }
                     const columnValidation = await validateColumns(columnsToValidate, validTableRefs, appContext);
                     objectValidation = {
                         tables: tableValidation,
-                        columns: columnValidation,
+                        columns: {
+                            ...columnValidation,
+                            ...(skippedColumns ? { skipped: skippedColumns } : {}),
+                        },
                         routines: routineValidation,
                     };
                 }
@@ -354,6 +370,7 @@ const validateQueryResponseFormatter = (result) => {
     const invalidTables = ov?.tables.invalid ?? [];
     const invalidColumns = ov?.columns.invalid ?? [];
     const invalidRoutines = ov?.routines.invalid ?? [];
+    const skippedColumns = ov?.columns.skipped ?? [];
     const parts = [];
     // Tables are high-confidence: SYSTABLES has comprehensive coverage
     if (invalidTables.length > 0) {
@@ -376,6 +393,10 @@ const validateQueryResponseFormatter = (result) => {
         parts.push("Note: The following references could not be verified against the system catalog. They may still be valid (e.g., system view columns, CTE aliases, UDTF outputs).");
         parts.push(warnings.join("\n"));
     }
+    // Report columns that were skipped during validation
+    if (skippedColumns.length > 0) {
+        parts.push(`Skipped column validation: ${skippedColumns.join(", ")} (from UDTF output or CTE alias — not present in SYSCOLUMNS). Verify these column names match the function's result set.`);
+    }
     parts.push(`Execution time: ${result.executionTime}ms`);
     const resultJson = JSON.stringify(result.data, null, 2);
     parts.push(`\nParse results:\n${resultJson}`);

package/dist/ibmi-mcp-server/tools/validateQuery.tool.js.map

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package/dist/mcp-server/tools/index.d.ts

@@ -9,7 +9,7 @@
 import type { McpServer } from "@modelcontextprotocol/sdk/server/mcp.js";
 /**
  * Registers all factory pattern tools with the MCP server.
- * Tools are defined in the allToolDefinitions array.
+ * Tools are defined by getAllToolDefinitions().
  */
 export declare function registerAllTools(server: McpServer): Promise<void>;
 //# sourceMappingURL=index.d.ts.map

package/dist/mcp-server/tools/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/mcp-server/tools/index.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,yCAAyC,CAAC;AAUzE;;;GAGG;AACH,wBAAsB,gBAAgB,CAAC,MAAM,EAAE,SAAS,GAAG,OAAO,CAAC,IAAI,CAAC,CA8BvE"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/mcp-server/tools/index.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,yCAAyC,CAAC;AAUzE;;;GAGG;AACH,wBAAsB,gBAAgB,CAAC,MAAM,EAAE,SAAS,GAAG,OAAO,CAAC,IAAI,CAAC,CAkCvE"}

package/dist/mcp-server/tools/index.js

@@ -6,21 +6,24 @@
  *
  * @module tools
  */
-import { allToolDefinitions } from "../../ibmi-mcp-server/tools/index.js";
+import { getAllToolDefinitions } from "../../ibmi-mcp-server/tools/index.js";
 import { registerToolFromDefinition } from "./utils/tool-factory.js";
 import { logger, requestContextService } from "../../utils/index.js";
 import { logOperationStart, logOperationSuccess, } from "../../utils/internal/logging-helpers.js";
 import { config } from "../../config/index.js";
 /**
  * Registers all factory pattern tools with the MCP server.
- * Tools are defined in the allToolDefinitions array.
+ * Tools are defined by getAllToolDefinitions().
  */
 export async function registerAllTools(server) {
     const context = requestContextService.createRequestContext({
         operation: "RegisterAllTools",
     });
-    logOperationStart(context, `Registering ${allToolDefinitions.length} factory pattern tools`);
-    for (const toolDef of allToolDefinitions) {
+    // Evaluate tool definitions at registration time (not module load time)
+    // so that CLI overrides like --builtin-tools are reflected.
+    const toolDefinitions = getAllToolDefinitions();
+    logOperationStart(context, `Registering ${toolDefinitions.length} factory pattern tools`);
+    for (const toolDef of toolDefinitions) {
         if (toolDef.name === "execute_sql" &&
             !config.ibmi_enableExecuteSql &&
             !config.ibmi_enableDefaultTools) {
@@ -30,6 +33,6 @@ export async function registerAllTools(server) {
         }
         await registerToolFromDefinition(server, toolDef);
     }
-    logOperationSuccess(context, `Successfully registered ${allToolDefinitions.length} factory pattern tools`);
+    logOperationSuccess(context, `Successfully registered ${toolDefinitions.length} factory pattern tools`);
 }
 //# sourceMappingURL=index.js.map

package/dist/mcp-server/tools/index.js.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ibm/ibmi-mcp-server",
-  "version": "0.4.1",
+  "version": "0.4.3",
   "description": "A production-grade MCP server for IBM i",
   "main": "dist/index.js",
   "types": "dist/index.d.ts",