@hyperspaceng/neural-coding-agent 0.62.1 → 0.63.0

package/dist/core/prompt-templates.d.ts

@@ -1,3 +1,4 @@
+import { type SourceInfo } from "./source-info.js";
 /**
  * Represents a prompt template loaded from a markdown file
  */
@@ -5,7 +6,7 @@ export interface PromptTemplate {
     name: string;
     description: string;
     content: string;
-    source: string;
+    sourceInfo: SourceInfo;
     filePath: string;
 }
 /**

package/dist/core/prompt-templates.d.ts.map

@@ -1 +1 @@
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Argument values\n * containing patterns like $1, $@, or $ARGUMENTS are NOT recursively substituted.\n */\nexport function substituteArgs(content: string, args: string[]): string {\n\tlet result = content;\n\n\t// Replace $1, $2, etc. with positional args FIRST (before wildcards)\n\t// This prevents wildcard replacement values containing $<digit> patterns from being re-substituted\n\tresult = result.replace(/\\$(\\d+)/g, (_, num) => {\n\t\tconst index = parseInt(num, 10) - 1;\n\t\treturn args[index] ?? \"\";\n\t});\n\n\t// Replace ${@:start} or ${@:start:length} with sliced args (bash-style)\n\t// Process BEFORE simple $@ to avoid conflicts\n\tresult = result.replace(/\\$\\{@:(\\d+)(?::(\\d+))?\\}/g, (_, startStr, lengthStr) => {\n\t\tlet start = parseInt(startStr, 10) - 1; // Convert to 0-indexed (user provides 1-indexed)\n\t\t// Treat 0 as 1 (bash convention: args start at 1)\n\t\tif (start < 0) start = 0;\n\n\t\tif (lengthStr) {\n\t\t\tconst length = parseInt(lengthStr, 10);\n\t\t\treturn args.slice(start, start + length).join(\" \");\n\t\t}\n\t\treturn args.slice(start).join(\" \");\n\t});\n\n\t// Pre-compute all args joined (optimization)\n\tconst allArgs = args.join(\" \");\n\n\t// Replace $ARGUMENTS with all args joined (new syntax, aligns with Claude, Codex, OpenCode)\n\tresult = result.replace(/\\$ARGUMENTS/g, allArgs);\n\n\t// Replace $@ with all args joined (existing syntax)\n\tresult = result.replace(/\\$@/g, allArgs);\n\n\treturn result;\n}\n\nfunction loadTemplateFromFile(filePath: string, source: string, sourceLabel: string): PromptTemplate | null {\n\ttry {\n\t\tconst rawContent = readFileSync(filePath, \"utf-8\");\n\t\tconst { frontmatter, body } = parseFrontmatter<Record<string, string>>(rawContent);\n\n\t\tconst name = basename(filePath).replace(/\\.md$/, \"\");\n\n\t\t// Get description from frontmatter or first non-empty line\n\t\tlet description = frontmatter.description || \"\";\n\t\tif (!description) {\n\t\t\tconst firstLine = body.split(\"\\n\").find((line) => line.trim());\n\t\t\tif (firstLine) {\n\t\t\t\t// Truncate if too long\n\t\t\t\tdescription = firstLine.slice(0, 60);\n\t\t\t\tif (firstLine.length > 60) description += \"...\";\n\t\t\t}\n\t\t}\n\n\t\t// Append source to description\n\t\tdescription = description ? `${description} ${sourceLabel}` : sourceLabel;\n\n\t\treturn {\n\t\t\tname,\n\t\t\tdescription,\n\t\t\tcontent: body,\n\t\t\tsource,\n\t\t\tfilePath,\n\t\t};\n\t} catch {\n\t\treturn null;\n\t}\n}\n\n/**\n * Scan a directory for .md files (non-recursive) and load them as prompt templates.\n */\nfunction loadTemplatesFromDir(dir: string, source: string, sourceLabel: string): PromptTemplate[] {\n\tconst templates: PromptTemplate[] = [];\n\n\tif (!existsSync(dir)) {\n\t\treturn templates;\n\t}\n\n\ttry {\n\t\tconst entries = readdirSync(dir, { withFileTypes: true });\n\n\t\tfor (const entry of entries) {\n\t\t\tconst fullPath = join(dir, entry.name);\n\n\t\t\t// For symlinks, check if they point to a file\n\t\t\tlet isFile = entry.isFile();\n\t\t\tif (entry.isSymbolicLink()) {\n\t\t\t\ttry {\n\t\t\t\t\tconst stats = statSync(fullPath);\n\t\t\t\t\tisFile = stats.isFile();\n\t\t\t\t} catch {\n\t\t\t\t\t// Broken symlink, skip it\n\t\t\t\t\tcontinue;\n\t\t\t\t}\n\t\t\t}\n\n\t\t\tif (isFile && entry.name.endsWith(\".md\")) {\n\t\t\t\tconst template = loadTemplateFromFile(fullPath, source, sourceLabel);\n\t\t\t\tif (template) {\n\t\t\t\t\ttemplates.push(template);\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\t} catch {\n\t\treturn templates;\n\t}\n\n\treturn templates;\n}\n\nexport interface LoadPromptTemplatesOptions {\n\t/** Working directory for project-local templates. Default: process.cwd() */\n\tcwd?: string;\n\t/** Agent config directory for global templates. Default: from getPromptsDir() */\n\tagentDir?: string;\n\t/** Explicit prompt template paths (files or directories) */\n\tpromptPaths?: string[];\n\t/** Include default prompt directories. Default: true */\n\tincludeDefaults?: boolean;\n}\n\nfunction normalizePath(input: string): string {\n\tconst trimmed = input.trim();\n\tif (trimmed === \"~\") return homedir();\n\tif (trimmed.startsWith(\"~/\")) return join(homedir(), trimmed.slice(2));\n\tif (trimmed.startsWith(\"~\")) return join(homedir(), trimmed.slice(1));\n\treturn trimmed;\n}\n\nfunction resolvePromptPath(p: string, cwd: string): string {\n\tconst normalized = normalizePath(p);\n\treturn isAbsolute(normalized) ? normalized : resolve(cwd, normalized);\n}\n\nfunction buildPathSourceLabel(p: string): string {\n\tconst base = basename(p).replace(/\\.md$/, \"\") || \"path\";\n\treturn `(path:${base})`;\n}\n\n/**\n * Load all prompt templates from:\n * 1. Global: agentDir/prompts/\n * 2. Project: cwd/{CONFIG_DIR_NAME}/prompts/\n * 3. Explicit prompt paths\n */\nexport function loadPromptTemplates(options: LoadPromptTemplatesOptions = {}): PromptTemplate[] {\n\tconst resolvedCwd = options.cwd ?? process.cwd();\n\tconst resolvedAgentDir = options.agentDir ?? getPromptsDir();\n\tconst promptPaths = options.promptPaths ?? [];\n\tconst includeDefaults = options.includeDefaults ?? true;\n\n\tconst templates: PromptTemplate[] = [];\n\n\tif (includeDefaults) {\n\t\t// 1. Load global templates from agentDir/prompts/\n\t\t// Note: if agentDir is provided, it should be the agent dir, not the prompts dir\n\t\tconst globalPromptsDir = options.agentDir ? join(options.agentDir, \"prompts\") : resolvedAgentDir;\n\t\ttemplates.push(...loadTemplatesFromDir(globalPromptsDir, \"user\", \"(user)\"));\n\n\t\t// 2. Load project templates from cwd/{CONFIG_DIR_NAME}/prompts/\n\t\tconst projectPromptsDir = resolve(resolvedCwd, CONFIG_DIR_NAME, \"prompts\");\n\t\ttemplates.push(...loadTemplatesFromDir(projectPromptsDir, \"project\", \"(project)\"));\n\t}\n\n\tconst userPromptsDir = options.agentDir ? join(options.agentDir, \"prompts\") : resolvedAgentDir;\n\tconst projectPromptsDir = resolve(resolvedCwd, CONFIG_DIR_NAME, \"prompts\");\n\n\tconst isUnderPath = (target: string, root: string): boolean => {\n\t\tconst normalizedRoot = resolve(root);\n\t\tif (target === normalizedRoot) {\n\t\t\treturn true;\n\t\t}\n\t\tconst prefix = normalizedRoot.endsWith(sep) ? normalizedRoot : `${normalizedRoot}${sep}`;\n\t\treturn target.startsWith(prefix);\n\t};\n\n\tconst getSourceInfo = (resolvedPath: string): { source: string; label: string } => {\n\t\tif (!includeDefaults) {\n\t\t\tif (isUnderPath(resolvedPath, userPromptsDir)) {\n\t\t\t\treturn { source: \"user\", label: \"(user)\" };\n\t\t\t}\n\t\t\tif (isUnderPath(resolvedPath, projectPromptsDir)) {\n\t\t\t\treturn { source: \"project\", label: \"(project)\" };\n\t\t\t}\n\t\t}\n\t\treturn { source: \"path\", label: buildPathSourceLabel(resolvedPath) };\n\t};\n\n\t// 3. Load explicit prompt paths\n\tfor (const rawPath of promptPaths) {\n\t\tconst resolvedPath = resolvePromptPath(rawPath, resolvedCwd);\n\t\tif (!existsSync(resolvedPath)) {\n\t\t\tcontinue;\n\t\t}\n\n\t\ttry {\n\t\t\tconst stats = statSync(resolvedPath);\n\t\t\tconst { source, label } = getSourceInfo(resolvedPath);\n\t\t\tif (stats.isDirectory()) {\n\t\t\t\ttemplates.push(...loadTemplatesFromDir(resolvedPath, source, label));\n\t\t\t} else if (stats.isFile() && resolvedPath.endsWith(\".md\")) {\n\t\t\t\tconst template = loadTemplateFromFile(resolvedPath, source, label);\n\t\t\t\tif (template) {\n\t\t\t\t\ttemplates.push(template);\n\t\t\t\t}\n\t\t\t}\n\t\t} catch {\n\t\t\t// Ignore read failures\n\t\t}\n\t}\n\n\treturn templates;\n}\n\n/**\n * Expand a prompt template if it matches a template name.\n * Returns the expanded content or the original text if not a template.\n */\nexport function expandPromptTemplate(text: string, templates: PromptTemplate[]): string {\n\tif (!text.startsWith(\"/\")) return text;\n\n\tconst spaceIndex = text.indexOf(\" \");\n\tconst templateName = spaceIndex === -1 ? text.slice(1) : text.slice(1, spaceIndex);\n\tconst argsString = spaceIndex === -1 ? \"\" : text.slice(spaceIndex + 1);\n\n\tconst template = templates.find((t) => t.name === templateName);\n\tif (template) {\n\t\tconst args = parseCommandArgs(argsString);\n\t\treturn substituteArgs(template.content, args);\n\t}\n\n\treturn text;\n}\n"]}
+{"version":3,"file":"prompt-templates.d.ts","sourceRoot":"","sources":["../../src/core/prompt-templates.ts"],"names":[],"mappings":"AAKA,OAAO,EAA6B,KAAK,UAAU,EAAE,MAAM,kBAAkB,CAAC;AAE9E;;GAEG;AACH,MAAM,WAAW,cAAc;IAC9B,IAAI,EAAE,MAAM,CAAC;IACb,WAAW,EAAE,MAAM,CAAC;IACpB,OAAO,EAAE,MAAM,CAAC;IAChB,UAAU,EAAE,UAAU,CAAC;IACvB,QAAQ,EAAE,MAAM,CAAC;CACjB;AAED;;;GAGG;AACH,wBAAgB,gBAAgB,CAAC,UAAU,EAAE,MAAM,GAAG,MAAM,EAAE,CA+B7D;AAED;;;;;;;;;;GAUG;AACH,wBAAgB,cAAc,CAAC,OAAO,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,GAAG,MAAM,CAkCtE;AA0ED,MAAM,WAAW,0BAA0B;IAC1C,4EAA4E;IAC5E,GAAG,CAAC,EAAE,MAAM,CAAC;IACb,iFAAiF;IACjF,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,4DAA4D;IAC5D,WAAW,CAAC,EAAE,MAAM,EAAE,CAAC;IACvB,wDAAwD;IACxD,eAAe,CAAC,EAAE,OAAO,CAAC;CAC1B;AAeD;;;;;GAKG;AACH,wBAAgB,mBAAmB,CAAC,OAAO,GAAE,0BAA+B,GAAG,cAAc,EAAE,CAqE9F;AAED;;;GAGG;AACH,wBAAgB,oBAAoB,CAAC,IAAI,EAAE,MAAM,EAAE,SAAS,EAAE,cAAc,EAAE,GAAG,MAAM,CActF","sourcesContent":["import { existsSync, readdirSync, readFileSync, statSync } from \"fs\";\nimport { homedir } from \"os\";\nimport { basename, dirname, isAbsolute, join, resolve, sep } from \"path\";\nimport { CONFIG_DIR_NAME, getPromptsDir } from \"../config.js\";\nimport { parseFrontmatter } from \"../utils/frontmatter.js\";\nimport { createSyntheticSourceInfo, type SourceInfo } from \"./source-info.js\";\n\n/**\n * Represents a prompt template loaded from a markdown file\n */\nexport interface PromptTemplate {\n\tname: string;\n\tdescription: string;\n\tcontent: string;\n\tsourceInfo: SourceInfo;\n\tfilePath: string; // Absolute path to the template file\n}\n\n/**\n * Parse command arguments respecting quoted strings (bash-style)\n * Returns array of arguments\n */\nexport function parseCommandArgs(argsString: string): string[] {\n\tconst args: string[] = [];\n\tlet current = \"\";\n\tlet inQuote: string | null = null;\n\n\tfor (let i = 0; i < argsString.length; i++) {\n\t\tconst char = argsString[i];\n\n\t\tif (inQuote) {\n\t\t\tif (char === inQuote) {\n\t\t\t\tinQuote = null;\n\t\t\t} else {\n\t\t\t\tcurrent += char;\n\t\t\t}\n\t\t} else if (char === '\"' || char === \"'\") {\n\t\t\tinQuote = char;\n\t\t} else if (char === \" \" || char === \"\\t\") {\n\t\t\tif (current) {\n\t\t\t\targs.push(current);\n\t\t\t\tcurrent = \"\";\n\t\t\t}\n\t\t} else {\n\t\t\tcurrent += char;\n\t\t}\n\t}\n\n\tif (current) {\n\t\targs.push(current);\n\t}\n\n\treturn args;\n}\n\n/**\n * Substitute argument placeholders in template content\n * Supports:\n * - $1, $2, ... for positional args\n * - $@ and $ARGUMENTS for all args\n * - ${@:N} for args from Nth onwards (bash-style slicing)\n * - ${@:N:L} for L args starting from Nth\n *\n * Note: Replacement happens on the template string only. Argument values\n * containing patterns like $1, $@, or $ARGUMENTS are NOT recursively substituted.\n */\nexport function substituteArgs(content: string, args: string[]): string {\n\tlet result = content;\n\n\t// Replace $1, $2, etc. with positional args FIRST (before wildcards)\n\t// This prevents wildcard replacement values containing $<digit> patterns from being re-substituted\n\tresult = result.replace(/\\$(\\d+)/g, (_, num) => {\n\t\tconst index = parseInt(num, 10) - 1;\n\t\treturn args[index] ?? \"\";\n\t});\n\n\t// Replace ${@:start} or ${@:start:length} with sliced args (bash-style)\n\t// Process BEFORE simple $@ to avoid conflicts\n\tresult = result.replace(/\\$\\{@:(\\d+)(?::(\\d+))?\\}/g, (_, startStr, lengthStr) => {\n\t\tlet start = parseInt(startStr, 10) - 1; // Convert to 0-indexed (user provides 1-indexed)\n\t\t// Treat 0 as 1 (bash convention: args start at 1)\n\t\tif (start < 0) start = 0;\n\n\t\tif (lengthStr) {\n\t\t\tconst length = parseInt(lengthStr, 10);\n\t\t\treturn args.slice(start, start + length).join(\" \");\n\t\t}\n\t\treturn args.slice(start).join(\" \");\n\t});\n\n\t// Pre-compute all args joined (optimization)\n\tconst allArgs = args.join(\" \");\n\n\t// Replace $ARGUMENTS with all args joined (new syntax, aligns with Claude, Codex, OpenCode)\n\tresult = result.replace(/\\$ARGUMENTS/g, allArgs);\n\n\t// Replace $@ with all args joined (existing syntax)\n\tresult = result.replace(/\\$@/g, allArgs);\n\n\treturn result;\n}\n\nfunction loadTemplateFromFile(filePath: string, sourceInfo: SourceInfo): PromptTemplate | null {\n\ttry {\n\t\tconst rawContent = readFileSync(filePath, \"utf-8\");\n\t\tconst { frontmatter, body } = parseFrontmatter<Record<string, string>>(rawContent);\n\n\t\tconst name = basename(filePath).replace(/\\.md$/, \"\");\n\n\t\t// Get description from frontmatter or first non-empty line\n\t\tlet description = frontmatter.description || \"\";\n\t\tif (!description) {\n\t\t\tconst firstLine = body.split(\"\\n\").find((line) => line.trim());\n\t\t\tif (firstLine) {\n\t\t\t\t// Truncate if too long\n\t\t\t\tdescription = firstLine.slice(0, 60);\n\t\t\t\tif (firstLine.length > 60) description += \"...\";\n\t\t\t}\n\t\t}\n\n\t\treturn {\n\t\t\tname,\n\t\t\tdescription,\n\t\t\tcontent: body,\n\t\t\tsourceInfo,\n\t\t\tfilePath,\n\t\t};\n\t} catch {\n\t\treturn null;\n\t}\n}\n\n/**\n * Scan a directory for .md files (non-recursive) and load them as prompt templates.\n */\nfunction loadTemplatesFromDir(dir: string, getSourceInfo: (filePath: string) => SourceInfo): PromptTemplate[] {\n\tconst templates: PromptTemplate[] = [];\n\n\tif (!existsSync(dir)) {\n\t\treturn templates;\n\t}\n\n\ttry {\n\t\tconst entries = readdirSync(dir, { withFileTypes: true });\n\n\t\tfor (const entry of entries) {\n\t\t\tconst fullPath = join(dir, entry.name);\n\n\t\t\t// For symlinks, check if they point to a file\n\t\t\tlet isFile = entry.isFile();\n\t\t\tif (entry.isSymbolicLink()) {\n\t\t\t\ttry {\n\t\t\t\t\tconst stats = statSync(fullPath);\n\t\t\t\t\tisFile = stats.isFile();\n\t\t\t\t} catch {\n\t\t\t\t\t// Broken symlink, skip it\n\t\t\t\t\tcontinue;\n\t\t\t\t}\n\t\t\t}\n\n\t\t\tif (isFile && entry.name.endsWith(\".md\")) {\n\t\t\t\tconst template = loadTemplateFromFile(fullPath, getSourceInfo(fullPath));\n\t\t\t\tif (template) {\n\t\t\t\t\ttemplates.push(template);\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\t} catch {\n\t\treturn templates;\n\t}\n\n\treturn templates;\n}\n\nexport interface LoadPromptTemplatesOptions {\n\t/** Working directory for project-local templates. Default: process.cwd() */\n\tcwd?: string;\n\t/** Agent config directory for global templates. Default: from getPromptsDir() */\n\tagentDir?: string;\n\t/** Explicit prompt template paths (files or directories) */\n\tpromptPaths?: string[];\n\t/** Include default prompt directories. Default: true */\n\tincludeDefaults?: boolean;\n}\n\nfunction normalizePath(input: string): string {\n\tconst trimmed = input.trim();\n\tif (trimmed === \"~\") return homedir();\n\tif (trimmed.startsWith(\"~/\")) return join(homedir(), trimmed.slice(2));\n\tif (trimmed.startsWith(\"~\")) return join(homedir(), trimmed.slice(1));\n\treturn trimmed;\n}\n\nfunction resolvePromptPath(p: string, cwd: string): string {\n\tconst normalized = normalizePath(p);\n\treturn isAbsolute(normalized) ? normalized : resolve(cwd, normalized);\n}\n\n/**\n * Load all prompt templates from:\n * 1. Global: agentDir/prompts/\n * 2. Project: cwd/{CONFIG_DIR_NAME}/prompts/\n * 3. Explicit prompt paths\n */\nexport function loadPromptTemplates(options: LoadPromptTemplatesOptions = {}): PromptTemplate[] {\n\tconst resolvedCwd = options.cwd ?? process.cwd();\n\tconst resolvedAgentDir = options.agentDir ?? getPromptsDir();\n\tconst promptPaths = options.promptPaths ?? [];\n\tconst includeDefaults = options.includeDefaults ?? true;\n\n\tconst templates: PromptTemplate[] = [];\n\n\tconst globalPromptsDir = options.agentDir ? join(options.agentDir, \"prompts\") : resolvedAgentDir;\n\tconst projectPromptsDir = resolve(resolvedCwd, CONFIG_DIR_NAME, \"prompts\");\n\n\tconst isUnderPath = (target: string, root: string): boolean => {\n\t\tconst normalizedRoot = resolve(root);\n\t\tif (target === normalizedRoot) {\n\t\t\treturn true;\n\t\t}\n\t\tconst prefix = normalizedRoot.endsWith(sep) ? normalizedRoot : `${normalizedRoot}${sep}`;\n\t\treturn target.startsWith(prefix);\n\t};\n\n\tconst getSourceInfo = (resolvedPath: string): SourceInfo => {\n\t\tif (isUnderPath(resolvedPath, globalPromptsDir)) {\n\t\t\treturn createSyntheticSourceInfo(resolvedPath, {\n\t\t\t\tsource: \"local\",\n\t\t\t\tscope: \"user\",\n\t\t\t\tbaseDir: globalPromptsDir,\n\t\t\t});\n\t\t}\n\t\tif (isUnderPath(resolvedPath, projectPromptsDir)) {\n\t\t\treturn createSyntheticSourceInfo(resolvedPath, {\n\t\t\t\tsource: \"local\",\n\t\t\t\tscope: \"project\",\n\t\t\t\tbaseDir: projectPromptsDir,\n\t\t\t});\n\t\t}\n\t\treturn createSyntheticSourceInfo(resolvedPath, {\n\t\t\tsource: \"local\",\n\t\t\tbaseDir: statSync(resolvedPath).isDirectory() ? resolvedPath : dirname(resolvedPath),\n\t\t});\n\t};\n\n\tif (includeDefaults) {\n\t\ttemplates.push(...loadTemplatesFromDir(globalPromptsDir, getSourceInfo));\n\t\ttemplates.push(...loadTemplatesFromDir(projectPromptsDir, getSourceInfo));\n\t}\n\n\t// 3. Load explicit prompt paths\n\tfor (const rawPath of promptPaths) {\n\t\tconst resolvedPath = resolvePromptPath(rawPath, resolvedCwd);\n\t\tif (!existsSync(resolvedPath)) {\n\t\t\tcontinue;\n\t\t}\n\n\t\ttry {\n\t\t\tconst stats = statSync(resolvedPath);\n\t\t\tif (stats.isDirectory()) {\n\t\t\t\ttemplates.push(...loadTemplatesFromDir(resolvedPath, getSourceInfo));\n\t\t\t} else if (stats.isFile() && resolvedPath.endsWith(\".md\")) {\n\t\t\t\tconst template = loadTemplateFromFile(resolvedPath, getSourceInfo(resolvedPath));\n\t\t\t\tif (template) {\n\t\t\t\t\ttemplates.push(template);\n\t\t\t\t}\n\t\t\t}\n\t\t} catch {\n\t\t\t// Ignore read failures\n\t\t}\n\t}\n\n\treturn templates;\n}\n\n/**\n * Expand a prompt template if it matches a template name.\n * Returns the expanded content or the original text if not a template.\n */\nexport function expandPromptTemplate(text: string, templates: PromptTemplate[]): string {\n\tif (!text.startsWith(\"/\")) return text;\n\n\tconst spaceIndex = text.indexOf(\" \");\n\tconst templateName = spaceIndex === -1 ? text.slice(1) : text.slice(1, spaceIndex);\n\tconst argsString = spaceIndex === -1 ? \"\" : text.slice(spaceIndex + 1);\n\n\tconst template = templates.find((t) => t.name === templateName);\n\tif (template) {\n\t\tconst args = parseCommandArgs(argsString);\n\t\treturn substituteArgs(template.content, args);\n\t}\n\n\treturn text;\n}\n"]}

package/dist/core/prompt-templates.js

@@ -1,8 +1,9 @@
 import { existsSync, readdirSync, readFileSync, statSync } from "fs";
 import { homedir } from "os";
-import { basename, isAbsolute, join, resolve, sep } from "path";
+import { basename, dirname, isAbsolute, join, resolve, sep } from "path";
 import { CONFIG_DIR_NAME, getPromptsDir } from "../config.js";
 import { parseFrontmatter } from "../utils/frontmatter.js";
+import { createSyntheticSourceInfo } from "./source-info.js";
 /**
  * Parse command arguments respecting quoted strings (bash-style)
  * Returns array of arguments
@@ -79,7 +80,7 @@ export function substituteArgs(content, args) {
     result = result.replace(/\$@/g, allArgs);
     return result;
 }
-function loadTemplateFromFile(filePath, source, sourceLabel) {
+function loadTemplateFromFile(filePath, sourceInfo) {
     try {
         const rawContent = readFileSync(filePath, "utf-8");
         const { frontmatter, body } = parseFrontmatter(rawContent);
@@ -95,13 +96,11 @@ function loadTemplateFromFile(filePath, source, sourceLabel) {
                     description += "...";
             }
         }
-        // Append source to description
-        description = description ? `${description} ${sourceLabel}` : sourceLabel;
         return {
             name,
             description,
             content: body,
-            source,
+            sourceInfo,
             filePath,
         };
     }
@@ -112,7 +111,7 @@ function loadTemplateFromFile(filePath, source, sourceLabel) {
 /**
  * Scan a directory for .md files (non-recursive) and load them as prompt templates.
  */
-function loadTemplatesFromDir(dir, source, sourceLabel) {
+function loadTemplatesFromDir(dir, getSourceInfo) {
     const templates = [];
     if (!existsSync(dir)) {
         return templates;
@@ -134,7 +133,7 @@ function loadTemplatesFromDir(dir, source, sourceLabel) {
                 }
             }
             if (isFile && entry.name.endsWith(".md")) {
-                const template = loadTemplateFromFile(fullPath, source, sourceLabel);
+                const template = loadTemplateFromFile(fullPath, getSourceInfo(fullPath));
                 if (template) {
                     templates.push(template);
                 }
@@ -160,10 +159,6 @@ function resolvePromptPath(p, cwd) {
     const normalized = normalizePath(p);
     return isAbsolute(normalized) ? normalized : resolve(cwd, normalized);
 }
-function buildPathSourceLabel(p) {
-    const base = basename(p).replace(/\.md$/, "") || "path";
-    return `(path:${base})`;
-}
 /**
  * Load all prompt templates from:
  * 1. Global: agentDir/prompts/
@@ -176,16 +171,7 @@ export function loadPromptTemplates(options = {}) {
     const promptPaths = options.promptPaths ?? [];
     const includeDefaults = options.includeDefaults ?? true;
     const templates = [];
-    if (includeDefaults) {
-        // 1. Load global templates from agentDir/prompts/
-        // Note: if agentDir is provided, it should be the agent dir, not the prompts dir
-        const globalPromptsDir = options.agentDir ? join(options.agentDir, "prompts") : resolvedAgentDir;
-        templates.push(...loadTemplatesFromDir(globalPromptsDir, "user", "(user)"));
-        // 2. Load project templates from cwd/{CONFIG_DIR_NAME}/prompts/
-        const projectPromptsDir = resolve(resolvedCwd, CONFIG_DIR_NAME, "prompts");
-        templates.push(...loadTemplatesFromDir(projectPromptsDir, "project", "(project)"));
-    }
-    const userPromptsDir = options.agentDir ? join(options.agentDir, "prompts") : resolvedAgentDir;
+    const globalPromptsDir = options.agentDir ? join(options.agentDir, "prompts") : resolvedAgentDir;
     const projectPromptsDir = resolve(resolvedCwd, CONFIG_DIR_NAME, "prompts");
     const isUnderPath = (target, root) => {
         const normalizedRoot = resolve(root);
@@ -196,16 +182,29 @@ export function loadPromptTemplates(options = {}) {
         return target.startsWith(prefix);
     };
     const getSourceInfo = (resolvedPath) => {
-        if (!includeDefaults) {
-            if (isUnderPath(resolvedPath, userPromptsDir)) {
-                return { source: "user", label: "(user)" };
-            }
-            if (isUnderPath(resolvedPath, projectPromptsDir)) {
-                return { source: "project", label: "(project)" };
-            }
+        if (isUnderPath(resolvedPath, globalPromptsDir)) {
+            return createSyntheticSourceInfo(resolvedPath, {
+                source: "local",
+                scope: "user",
+                baseDir: globalPromptsDir,
+            });
+        }
+        if (isUnderPath(resolvedPath, projectPromptsDir)) {
+            return createSyntheticSourceInfo(resolvedPath, {
+                source: "local",
+                scope: "project",
+                baseDir: projectPromptsDir,
+            });
         }
-        return { source: "path", label: buildPathSourceLabel(resolvedPath) };
+        return createSyntheticSourceInfo(resolvedPath, {
+            source: "local",
+            baseDir: statSync(resolvedPath).isDirectory() ? resolvedPath : dirname(resolvedPath),
+        });
     };
+    if (includeDefaults) {
+        templates.push(...loadTemplatesFromDir(globalPromptsDir, getSourceInfo));
+        templates.push(...loadTemplatesFromDir(projectPromptsDir, getSourceInfo));
+    }
     // 3. Load explicit prompt paths
     for (const rawPath of promptPaths) {
         const resolvedPath = resolvePromptPath(rawPath, resolvedCwd);
@@ -214,12 +213,11 @@ export function loadPromptTemplates(options = {}) {
         }
         try {
             const stats = statSync(resolvedPath);
-            const { source, label } = getSourceInfo(resolvedPath);
             if (stats.isDirectory()) {
-                templates.push(...loadTemplatesFromDir(resolvedPath, source, label));
+                templates.push(...loadTemplatesFromDir(resolvedPath, getSourceInfo));
             }
             else if (stats.isFile() && resolvedPath.endsWith(".md")) {
-                const template = loadTemplateFromFile(resolvedPath, source, label);
+                const template = loadTemplateFromFile(resolvedPath, getSourceInfo(resolvedPath));
                 if (template) {
                     templates.push(template);
                 }

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Load project templates from cwd/{CONFIG_DIR_NAME}/prompts/\n\t\tconst projectPromptsDir = resolve(resolvedCwd, CONFIG_DIR_NAME, \"prompts\");\n\t\ttemplates.push(...loadTemplatesFromDir(projectPromptsDir, \"project\", \"(project)\"));\n\t}\n\n\tconst userPromptsDir = options.agentDir ? join(options.agentDir, \"prompts\") : resolvedAgentDir;\n\tconst projectPromptsDir = resolve(resolvedCwd, CONFIG_DIR_NAME, \"prompts\");\n\n\tconst isUnderPath = (target: string, root: string): boolean => {\n\t\tconst normalizedRoot = resolve(root);\n\t\tif (target === normalizedRoot) {\n\t\t\treturn true;\n\t\t}\n\t\tconst prefix = normalizedRoot.endsWith(sep) ? normalizedRoot : `${normalizedRoot}${sep}`;\n\t\treturn target.startsWith(prefix);\n\t};\n\n\tconst getSourceInfo = (resolvedPath: string): { source: string; label: string } => {\n\t\tif (!includeDefaults) {\n\t\t\tif (isUnderPath(resolvedPath, userPromptsDir)) {\n\t\t\t\treturn { source: \"user\", label: \"(user)\" };\n\t\t\t}\n\t\t\tif (isUnderPath(resolvedPath, projectPromptsDir)) {\n\t\t\t\treturn { source: \"project\", label: \"(project)\" };\n\t\t\t}\n\t\t}\n\t\treturn { source: \"path\", label: buildPathSourceLabel(resolvedPath) };\n\t};\n\n\t// 3. 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argsString[i];\n\n\t\tif (inQuote) {\n\t\t\tif (char === inQuote) {\n\t\t\t\tinQuote = null;\n\t\t\t} else {\n\t\t\t\tcurrent += char;\n\t\t\t}\n\t\t} else if (char === '\"' || char === \"'\") {\n\t\t\tinQuote = char;\n\t\t} else if (char === \" \" || char === \"\\t\") {\n\t\t\tif (current) {\n\t\t\t\targs.push(current);\n\t\t\t\tcurrent = \"\";\n\t\t\t}\n\t\t} else {\n\t\t\tcurrent += char;\n\t\t}\n\t}\n\n\tif (current) {\n\t\targs.push(current);\n\t}\n\n\treturn args;\n}\n\n/**\n * Substitute argument placeholders in template content\n * Supports:\n * - $1, $2, ... for positional args\n * - $@ and $ARGUMENTS for all args\n * - ${@:N} for args from Nth onwards (bash-style slicing)\n * - ${@:N:L} for L args starting from Nth\n *\n * Note: Replacement happens on the template string only. Argument values\n * containing patterns like $1, $@, or $ARGUMENTS are NOT recursively substituted.\n */\nexport function substituteArgs(content: string, args: string[]): string {\n\tlet result = content;\n\n\t// Replace $1, $2, etc. with positional args FIRST (before wildcards)\n\t// This prevents wildcard replacement values containing $<digit> patterns from being re-substituted\n\tresult = result.replace(/\\$(\\d+)/g, (_, num) => {\n\t\tconst index = parseInt(num, 10) - 1;\n\t\treturn args[index] ?? \"\";\n\t});\n\n\t// Replace ${@:start} or ${@:start:length} with sliced args (bash-style)\n\t// Process BEFORE simple $@ to avoid conflicts\n\tresult = result.replace(/\\$\\{@:(\\d+)(?::(\\d+))?\\}/g, (_, startStr, lengthStr) => {\n\t\tlet start = parseInt(startStr, 10) - 1; // Convert to 0-indexed (user provides 1-indexed)\n\t\t// Treat 0 as 1 (bash convention: args start at 1)\n\t\tif (start < 0) start = 0;\n\n\t\tif (lengthStr) {\n\t\t\tconst length = parseInt(lengthStr, 10);\n\t\t\treturn args.slice(start, start + length).join(\" \");\n\t\t}\n\t\treturn args.slice(start).join(\" \");\n\t});\n\n\t// Pre-compute all args joined (optimization)\n\tconst allArgs = args.join(\" \");\n\n\t// Replace $ARGUMENTS with all args joined (new syntax, aligns with Claude, Codex, OpenCode)\n\tresult = result.replace(/\\$ARGUMENTS/g, allArgs);\n\n\t// Replace $@ with all args joined (existing syntax)\n\tresult = result.replace(/\\$@/g, allArgs);\n\n\treturn result;\n}\n\nfunction loadTemplateFromFile(filePath: string, sourceInfo: SourceInfo): PromptTemplate | null {\n\ttry {\n\t\tconst rawContent = readFileSync(filePath, \"utf-8\");\n\t\tconst { frontmatter, body } = parseFrontmatter<Record<string, string>>(rawContent);\n\n\t\tconst name = basename(filePath).replace(/\\.md$/, \"\");\n\n\t\t// Get description from frontmatter or first non-empty line\n\t\tlet description = frontmatter.description || \"\";\n\t\tif (!description) {\n\t\t\tconst firstLine = body.split(\"\\n\").find((line) => line.trim());\n\t\t\tif (firstLine) {\n\t\t\t\t// Truncate if too long\n\t\t\t\tdescription = firstLine.slice(0, 60);\n\t\t\t\tif (firstLine.length > 60) description += \"...\";\n\t\t\t}\n\t\t}\n\n\t\treturn {\n\t\t\tname,\n\t\t\tdescription,\n\t\t\tcontent: body,\n\t\t\tsourceInfo,\n\t\t\tfilePath,\n\t\t};\n\t} catch {\n\t\treturn null;\n\t}\n}\n\n/**\n * Scan a directory for .md files (non-recursive) and load them as prompt templates.\n */\nfunction loadTemplatesFromDir(dir: string, getSourceInfo: (filePath: string) => SourceInfo): PromptTemplate[] {\n\tconst templates: PromptTemplate[] = [];\n\n\tif (!existsSync(dir)) {\n\t\treturn templates;\n\t}\n\n\ttry {\n\t\tconst entries = readdirSync(dir, { withFileTypes: true });\n\n\t\tfor (const entry of entries) {\n\t\t\tconst fullPath = join(dir, entry.name);\n\n\t\t\t// For symlinks, check if they point to a file\n\t\t\tlet isFile = entry.isFile();\n\t\t\tif (entry.isSymbolicLink()) {\n\t\t\t\ttry {\n\t\t\t\t\tconst stats = statSync(fullPath);\n\t\t\t\t\tisFile = stats.isFile();\n\t\t\t\t} catch {\n\t\t\t\t\t// Broken symlink, skip it\n\t\t\t\t\tcontinue;\n\t\t\t\t}\n\t\t\t}\n\n\t\t\tif (isFile && entry.name.endsWith(\".md\")) {\n\t\t\t\tconst template = loadTemplateFromFile(fullPath, getSourceInfo(fullPath));\n\t\t\t\tif (template) {\n\t\t\t\t\ttemplates.push(template);\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\t} catch {\n\t\treturn templates;\n\t}\n\n\treturn templates;\n}\n\nexport interface LoadPromptTemplatesOptions {\n\t/** Working directory for project-local templates. Default: process.cwd() */\n\tcwd?: string;\n\t/** Agent config directory for global templates. Default: from getPromptsDir() */\n\tagentDir?: string;\n\t/** Explicit prompt template paths (files or directories) */\n\tpromptPaths?: string[];\n\t/** Include default prompt directories. Default: true */\n\tincludeDefaults?: boolean;\n}\n\nfunction normalizePath(input: string): string {\n\tconst trimmed = input.trim();\n\tif (trimmed === \"~\") return homedir();\n\tif (trimmed.startsWith(\"~/\")) return join(homedir(), trimmed.slice(2));\n\tif (trimmed.startsWith(\"~\")) return join(homedir(), trimmed.slice(1));\n\treturn trimmed;\n}\n\nfunction resolvePromptPath(p: string, cwd: string): string {\n\tconst normalized = normalizePath(p);\n\treturn isAbsolute(normalized) ? normalized : resolve(cwd, normalized);\n}\n\n/**\n * Load all prompt templates from:\n * 1. Global: agentDir/prompts/\n * 2. Project: cwd/{CONFIG_DIR_NAME}/prompts/\n * 3. Explicit prompt paths\n */\nexport function loadPromptTemplates(options: LoadPromptTemplatesOptions = {}): PromptTemplate[] {\n\tconst resolvedCwd = options.cwd ?? process.cwd();\n\tconst resolvedAgentDir = options.agentDir ?? getPromptsDir();\n\tconst promptPaths = options.promptPaths ?? [];\n\tconst includeDefaults = options.includeDefaults ?? true;\n\n\tconst templates: PromptTemplate[] = [];\n\n\tconst globalPromptsDir = options.agentDir ? join(options.agentDir, \"prompts\") : resolvedAgentDir;\n\tconst projectPromptsDir = resolve(resolvedCwd, CONFIG_DIR_NAME, \"prompts\");\n\n\tconst isUnderPath = (target: string, root: string): boolean => {\n\t\tconst normalizedRoot = resolve(root);\n\t\tif (target === normalizedRoot) {\n\t\t\treturn true;\n\t\t}\n\t\tconst prefix = normalizedRoot.endsWith(sep) ? normalizedRoot : `${normalizedRoot}${sep}`;\n\t\treturn target.startsWith(prefix);\n\t};\n\n\tconst getSourceInfo = (resolvedPath: string): SourceInfo => {\n\t\tif (isUnderPath(resolvedPath, globalPromptsDir)) {\n\t\t\treturn createSyntheticSourceInfo(resolvedPath, {\n\t\t\t\tsource: \"local\",\n\t\t\t\tscope: \"user\",\n\t\t\t\tbaseDir: globalPromptsDir,\n\t\t\t});\n\t\t}\n\t\tif (isUnderPath(resolvedPath, projectPromptsDir)) {\n\t\t\treturn createSyntheticSourceInfo(resolvedPath, {\n\t\t\t\tsource: \"local\",\n\t\t\t\tscope: \"project\",\n\t\t\t\tbaseDir: projectPromptsDir,\n\t\t\t});\n\t\t}\n\t\treturn createSyntheticSourceInfo(resolvedPath, {\n\t\t\tsource: \"local\",\n\t\t\tbaseDir: statSync(resolvedPath).isDirectory() ? resolvedPath : dirname(resolvedPath),\n\t\t});\n\t};\n\n\tif (includeDefaults) {\n\t\ttemplates.push(...loadTemplatesFromDir(globalPromptsDir, getSourceInfo));\n\t\ttemplates.push(...loadTemplatesFromDir(projectPromptsDir, getSourceInfo));\n\t}\n\n\t// 3. Load explicit prompt paths\n\tfor (const rawPath of promptPaths) {\n\t\tconst resolvedPath = resolvePromptPath(rawPath, resolvedCwd);\n\t\tif (!existsSync(resolvedPath)) {\n\t\t\tcontinue;\n\t\t}\n\n\t\ttry {\n\t\t\tconst stats = statSync(resolvedPath);\n\t\t\tif (stats.isDirectory()) {\n\t\t\t\ttemplates.push(...loadTemplatesFromDir(resolvedPath, getSourceInfo));\n\t\t\t} else if (stats.isFile() && resolvedPath.endsWith(\".md\")) {\n\t\t\t\tconst template = loadTemplateFromFile(resolvedPath, getSourceInfo(resolvedPath));\n\t\t\t\tif (template) {\n\t\t\t\t\ttemplates.push(template);\n\t\t\t\t}\n\t\t\t}\n\t\t} catch {\n\t\t\t// Ignore read failures\n\t\t}\n\t}\n\n\treturn templates;\n}\n\n/**\n * Expand a prompt template if it matches a template name.\n * Returns the expanded content or the original text if not a template.\n */\nexport function expandPromptTemplate(text: string, templates: PromptTemplate[]): string {\n\tif (!text.startsWith(\"/\")) return text;\n\n\tconst spaceIndex = text.indexOf(\" \");\n\tconst templateName = spaceIndex === -1 ? text.slice(1) : text.slice(1, spaceIndex);\n\tconst argsString = spaceIndex === -1 ? \"\" : text.slice(spaceIndex + 1);\n\n\tconst template = templates.find((t) => t.name === templateName);\n\tif (template) {\n\t\tconst args = parseCommandArgs(argsString);\n\t\treturn substituteArgs(template.content, args);\n\t}\n\n\treturn text;\n}\n"]}

package/dist/core/resource-loader.d.ts

@@ -43,7 +43,6 @@ export interface ResourceLoader {
     };
     getSystemPrompt(): string | undefined;
     getAppendSystemPrompt(): string[];
-    getPathMetadata(): Map<string, PathMetadata>;
     extendResources(paths: ResourceExtensionPaths): void;
     reload(): Promise<void>;
 }
@@ -133,8 +132,10 @@ export declare class DefaultResourceLoader implements ResourceLoader {
     private agentsFiles;
     private systemPrompt?;
     private appendSystemPrompt;
-    private pathMetadata;
     private lastSkillPaths;
+    private extensionSkillSourceInfos;
+    private extensionPromptSourceInfos;
+    private extensionThemeSourceInfos;
     private lastPromptPaths;
     private lastThemePaths;
     constructor(options: DefaultResourceLoaderOptions);
@@ -159,14 +160,15 @@ export declare class DefaultResourceLoader implements ResourceLoader {
     };
     getSystemPrompt(): string | undefined;
     getAppendSystemPrompt(): string[];
-    getPathMetadata(): Map<string, PathMetadata>;
     extendResources(paths: ResourceExtensionPaths): void;
     reload(): Promise<void>;
     private normalizeExtensionPaths;
     private updateSkillsFromPaths;
     private updatePromptsFromPaths;
     private updateThemesFromPaths;
-    private applyExtensionMetadata;
+    private applyExtensionSourceInfo;
+    private findSourceInfoForPath;
+    private getDefaultSourceInfoForPath;
     private mergePaths;
     private resolveResourcePath;
     private loadThemes;
@@ -177,7 +179,6 @@ export declare class DefaultResourceLoader implements ResourceLoader {
     private dedupeThemes;
     private discoverSystemPromptFile;
     private discoverAppendSystemPromptFile;
-    private addDefaultMetadataForPath;
     private isUnderPath;
     private detectExtensionConflicts;
 }

package/dist/core/resource-loader.d.ts.map

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{ existsSync, readdirSync, readFileSync, statSync } from \"node:fs\";\nimport { homedir } from \"node:os\";\nimport { join, resolve, sep } from \"node:path\";\nimport chalk from \"chalk\";\nimport { CONFIG_DIR_NAME, getAgentDir } from \"../config.js\";\nimport { loadThemeFromPath, type Theme } from \"../modes/interactive/theme/theme.js\";\nimport type { ResourceDiagnostic } from \"./diagnostics.js\";\n\nexport type { ResourceCollision, ResourceDiagnostic } from \"./diagnostics.js\";\n\nimport { createEventBus, type EventBus } from \"./event-bus.js\";\nimport { createExtensionRuntime, loadExtensionFromFactory, loadExtensions } from \"./extensions/loader.js\";\nimport type { Extension, ExtensionFactory, ExtensionRuntime, LoadExtensionsResult } from \"./extensions/types.js\";\nimport { DefaultPackageManager, type PathMetadata } from \"./package-manager.js\";\nimport type { PromptTemplate } from \"./prompt-templates.js\";\nimport { loadPromptTemplates } from \"./prompt-templates.js\";\nimport { SettingsManager } from \"./settings-manager.js\";\nimport type { Skill } from \"./skills.js\";\nimport { loadSkills } from \"./skills.js\";\n\nexport interface ResourceExtensionPaths {\n\tskillPaths?: Array<{ path: string; metadata: PathMetadata }>;\n\tpromptPaths?: Array<{ path: string; metadata: PathMetadata }>;\n\tthemePaths?: Array<{ path: string; metadata: PathMetadata }>;\n}\n\nexport interface ResourceLoader {\n\tgetExtensions(): LoadExtensionsResult;\n\tgetSkills(): { skills: Skill[]; diagnostics: ResourceDiagnostic[] };\n\tgetPrompts(): { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] };\n\tgetThemes(): { themes: Theme[]; diagnostics: ResourceDiagnostic[] };\n\tgetAgentsFiles(): { agentsFiles: Array<{ path: string; content: string }> };\n\tgetSystemPrompt(): string | undefined;\n\tgetAppendSystemPrompt(): string[];\n\tgetPathMetadata(): Map<string, PathMetadata>;\n\textendResources(paths: ResourceExtensionPaths): void;\n\treload(): Promise<void>;\n}\n\nfunction resolvePromptInput(input: string | undefined, description: string): string | undefined {\n\tif (!input) {\n\t\treturn undefined;\n\t}\n\n\tif (existsSync(input)) {\n\t\ttry {\n\t\t\treturn readFileSync(input, \"utf-8\");\n\t\t} catch (error) {\n\t\t\tconsole.error(chalk.yellow(`Warning: Could not read ${description} file ${input}: ${error}`));\n\t\t\treturn input;\n\t\t}\n\t}\n\n\treturn input;\n}\n\nfunction loadContextFileFromDir(dir: string): { path: string; content: string } | null {\n\tconst candidates = [\"AGENTS.md\", \"CLAUDE.md\"];\n\tfor (const filename of candidates) {\n\t\tconst filePath = join(dir, filename);\n\t\tif (existsSync(filePath)) {\n\t\t\ttry {\n\t\t\t\treturn {\n\t\t\t\t\tpath: filePath,\n\t\t\t\t\tcontent: readFileSync(filePath, \"utf-8\"),\n\t\t\t\t};\n\t\t\t} catch (error) {\n\t\t\t\tconsole.error(chalk.yellow(`Warning: Could not read ${filePath}: ${error}`));\n\t\t\t}\n\t\t}\n\t}\n\treturn null;\n}\n\nfunction loadProjectContextFiles(\n\toptions: { cwd?: string; agentDir?: string } = {},\n): Array<{ path: string; content: string }> {\n\tconst resolvedCwd = options.cwd ?? process.cwd();\n\tconst resolvedAgentDir = options.agentDir ?? getAgentDir();\n\n\tconst contextFiles: Array<{ path: string; content: string }> = [];\n\tconst seenPaths = new Set<string>();\n\n\tconst globalContext = loadContextFileFromDir(resolvedAgentDir);\n\tif (globalContext) {\n\t\tcontextFiles.push(globalContext);\n\t\tseenPaths.add(globalContext.path);\n\t}\n\n\tconst ancestorContextFiles: Array<{ path: string; content: string }> = [];\n\n\tlet currentDir = resolvedCwd;\n\tconst root = resolve(\"/\");\n\n\twhile (true) {\n\t\tconst contextFile = loadContextFileFromDir(currentDir);\n\t\tif (contextFile && !seenPaths.has(contextFile.path)) {\n\t\t\tancestorContextFiles.unshift(contextFile);\n\t\t\tseenPaths.add(contextFile.path);\n\t\t}\n\n\t\tif (currentDir === root) break;\n\n\t\tconst parentDir = resolve(currentDir, \"..\");\n\t\tif (parentDir === currentDir) break;\n\t\tcurrentDir = parentDir;\n\t}\n\n\tcontextFiles.push(...ancestorContextFiles);\n\n\treturn contextFiles;\n}\n\nexport interface DefaultResourceLoaderOptions {\n\tcwd?: string;\n\tagentDir?: string;\n\tsettingsManager?: SettingsManager;\n\teventBus?: EventBus;\n\tadditionalExtensionPaths?: string[];\n\tadditionalSkillPaths?: string[];\n\tadditionalPromptTemplatePaths?: string[];\n\tadditionalThemePaths?: string[];\n\textensionFactories?: ExtensionFactory[];\n\tnoExtensions?: boolean;\n\tnoSkills?: boolean;\n\tnoPromptTemplates?: boolean;\n\tnoThemes?: boolean;\n\tsystemPrompt?: string;\n\tappendSystemPrompt?: string;\n\textensionsOverride?: (base: LoadExtensionsResult) => LoadExtensionsResult;\n\tskillsOverride?: (base: { skills: Skill[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tskills: Skill[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tpromptsOverride?: (base: { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tprompts: PromptTemplate[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tthemesOverride?: (base: { themes: Theme[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tthemes: Theme[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tagentsFilesOverride?: (base: { agentsFiles: Array<{ path: string; content: string }> }) => {\n\t\tagentsFiles: Array<{ path: string; content: string }>;\n\t};\n\tsystemPromptOverride?: (base: string | undefined) => string | undefined;\n\tappendSystemPromptOverride?: (base: string[]) => string[];\n}\n\nexport class DefaultResourceLoader implements ResourceLoader {\n\tprivate cwd: string;\n\tprivate agentDir: string;\n\tprivate settingsManager: SettingsManager;\n\tprivate eventBus: EventBus;\n\tprivate packageManager: DefaultPackageManager;\n\tprivate additionalExtensionPaths: string[];\n\tprivate additionalSkillPaths: string[];\n\tprivate additionalPromptTemplatePaths: string[];\n\tprivate additionalThemePaths: string[];\n\tprivate extensionFactories: ExtensionFactory[];\n\tprivate noExtensions: boolean;\n\tprivate noSkills: boolean;\n\tprivate noPromptTemplates: boolean;\n\tprivate noThemes: boolean;\n\tprivate systemPromptSource?: string;\n\tprivate appendSystemPromptSource?: string;\n\tprivate extensionsOverride?: (base: LoadExtensionsResult) => LoadExtensionsResult;\n\tprivate skillsOverride?: (base: { skills: Skill[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tskills: Skill[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tprivate promptsOverride?: (base: { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tprompts: PromptTemplate[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tprivate themesOverride?: (base: { themes: Theme[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tthemes: Theme[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tprivate agentsFilesOverride?: (base: { agentsFiles: Array<{ path: string; content: string }> }) => {\n\t\tagentsFiles: Array<{ path: string; content: string }>;\n\t};\n\tprivate systemPromptOverride?: (base: string | undefined) => string | undefined;\n\tprivate appendSystemPromptOverride?: (base: string[]) => string[];\n\n\tprivate extensionsResult: LoadExtensionsResult;\n\tprivate skills: Skill[];\n\tprivate skillDiagnostics: ResourceDiagnostic[];\n\tprivate prompts: PromptTemplate[];\n\tprivate promptDiagnostics: ResourceDiagnostic[];\n\tprivate themes: Theme[];\n\tprivate themeDiagnostics: ResourceDiagnostic[];\n\tprivate agentsFiles: Array<{ path: string; content: string }>;\n\tprivate systemPrompt?: string;\n\tprivate appendSystemPrompt: string[];\n\tprivate pathMetadata: Map<string, PathMetadata>;\n\tprivate lastSkillPaths: string[];\n\tprivate lastPromptPaths: string[];\n\tprivate lastThemePaths: string[];\n\n\tconstructor(options: DefaultResourceLoaderOptions) {\n\t\tthis.cwd = options.cwd ?? process.cwd();\n\t\tthis.agentDir = options.agentDir ?? getAgentDir();\n\t\tthis.settingsManager = options.settingsManager ?? SettingsManager.create(this.cwd, this.agentDir);\n\t\tthis.eventBus = options.eventBus ?? createEventBus();\n\t\tthis.packageManager = new DefaultPackageManager({\n\t\t\tcwd: this.cwd,\n\t\t\tagentDir: this.agentDir,\n\t\t\tsettingsManager: this.settingsManager,\n\t\t});\n\t\tthis.additionalExtensionPaths = options.additionalExtensionPaths ?? [];\n\t\tthis.additionalSkillPaths = options.additionalSkillPaths ?? [];\n\t\tthis.additionalPromptTemplatePaths = options.additionalPromptTemplatePaths ?? [];\n\t\tthis.additionalThemePaths = options.additionalThemePaths ?? [];\n\t\tthis.extensionFactories = options.extensionFactories ?? [];\n\t\tthis.noExtensions = options.noExtensions ?? false;\n\t\tthis.noSkills = options.noSkills ?? false;\n\t\tthis.noPromptTemplates = options.noPromptTemplates ?? false;\n\t\tthis.noThemes = options.noThemes ?? false;\n\t\tthis.systemPromptSource = options.systemPrompt;\n\t\tthis.appendSystemPromptSource = options.appendSystemPrompt;\n\t\tthis.extensionsOverride = options.extensionsOverride;\n\t\tthis.skillsOverride = options.skillsOverride;\n\t\tthis.promptsOverride = options.promptsOverride;\n\t\tthis.themesOverride = options.themesOverride;\n\t\tthis.agentsFilesOverride = options.agentsFilesOverride;\n\t\tthis.systemPromptOverride = options.systemPromptOverride;\n\t\tthis.appendSystemPromptOverride = options.appendSystemPromptOverride;\n\n\t\tthis.extensionsResult = { extensions: [], errors: [], runtime: createExtensionRuntime() };\n\t\tthis.skills = [];\n\t\tthis.skillDiagnostics = [];\n\t\tthis.prompts = [];\n\t\tthis.promptDiagnostics = [];\n\t\tthis.themes = [];\n\t\tthis.themeDiagnostics = [];\n\t\tthis.agentsFiles = [];\n\t\tthis.appendSystemPrompt = [];\n\t\tthis.pathMetadata = new Map();\n\t\tthis.lastSkillPaths = [];\n\t\tthis.lastPromptPaths = [];\n\t\tthis.lastThemePaths = [];\n\t}\n\n\tgetExtensions(): LoadExtensionsResult {\n\t\treturn this.extensionsResult;\n\t}\n\n\tgetSkills(): { skills: Skill[]; diagnostics: ResourceDiagnostic[] } {\n\t\treturn { skills: this.skills, diagnostics: this.skillDiagnostics };\n\t}\n\n\tgetPrompts(): { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] } {\n\t\treturn { prompts: this.prompts, diagnostics: this.promptDiagnostics };\n\t}\n\n\tgetThemes(): { themes: Theme[]; diagnostics: ResourceDiagnostic[] } {\n\t\treturn { themes: this.themes, diagnostics: this.themeDiagnostics };\n\t}\n\n\tgetAgentsFiles(): { agentsFiles: Array<{ path: string; content: string }> } {\n\t\treturn { agentsFiles: this.agentsFiles };\n\t}\n\n\tgetSystemPrompt(): string | undefined {\n\t\treturn this.systemPrompt;\n\t}\n\n\tgetAppendSystemPrompt(): string[] {\n\t\treturn this.appendSystemPrompt;\n\t}\n\n\tgetPathMetadata(): Map<string, PathMetadata> {\n\t\treturn this.pathMetadata;\n\t}\n\n\textendResources(paths: ResourceExtensionPaths): void {\n\t\tconst skillPaths = this.normalizeExtensionPaths(paths.skillPaths ?? []);\n\t\tconst promptPaths = this.normalizeExtensionPaths(paths.promptPaths ?? []);\n\t\tconst themePaths = this.normalizeExtensionPaths(paths.themePaths ?? []);\n\n\t\tif (skillPaths.length > 0) {\n\t\t\tthis.lastSkillPaths = this.mergePaths(\n\t\t\t\tthis.lastSkillPaths,\n\t\t\t\tskillPaths.map((entry) => entry.path),\n\t\t\t);\n\t\t\tthis.updateSkillsFromPaths(this.lastSkillPaths, skillPaths);\n\t\t}\n\n\t\tif (promptPaths.length > 0) {\n\t\t\tthis.lastPromptPaths = this.mergePaths(\n\t\t\t\tthis.lastPromptPaths,\n\t\t\t\tpromptPaths.map((entry) => entry.path),\n\t\t\t);\n\t\t\tthis.updatePromptsFromPaths(this.lastPromptPaths, promptPaths);\n\t\t}\n\n\t\tif (themePaths.length > 0) {\n\t\t\tthis.lastThemePaths = this.mergePaths(\n\t\t\t\tthis.lastThemePaths,\n\t\t\t\tthemePaths.map((entry) => entry.path),\n\t\t\t);\n\t\t\tthis.updateThemesFromPaths(this.lastThemePaths, themePaths);\n\t\t}\n\t}\n\n\tasync reload(): Promise<void> {\n\t\tconst resolvedPaths = await this.packageManager.resolve();\n\t\tconst cliExtensionPaths = await this.packageManager.resolveExtensionSources(this.additionalExtensionPaths, {\n\t\t\ttemporary: true,\n\t\t});\n\n\t\t// Helper to extract enabled paths and store metadata\n\t\tconst getEnabledResources = (\n\t\t\tresources: Array<{ path: string; enabled: boolean; metadata: PathMetadata }>,\n\t\t): Array<{ path: string; enabled: boolean; metadata: PathMetadata }> => {\n\t\t\tfor (const r of resources) {\n\t\t\t\tif (!this.pathMetadata.has(r.path)) {\n\t\t\t\t\tthis.pathMetadata.set(r.path, r.metadata);\n\t\t\t\t}\n\t\t\t}\n\t\t\treturn resources.filter((r) => r.enabled);\n\t\t};\n\n\t\tconst getEnabledPaths = (\n\t\t\tresources: Array<{ path: string; enabled: boolean; metadata: PathMetadata }>,\n\t\t): string[] => getEnabledResources(resources).map((r) => r.path);\n\n\t\t// Store metadata and get enabled paths\n\t\tthis.pathMetadata = new Map();\n\t\tconst enabledExtensions = getEnabledPaths(resolvedPaths.extensions);\n\t\tconst enabledSkillResources = getEnabledResources(resolvedPaths.skills);\n\t\tconst enabledPrompts = getEnabledPaths(resolvedPaths.prompts);\n\t\tconst enabledThemes = getEnabledPaths(resolvedPaths.themes);\n\n\t\tconst mapSkillPath = (resource: { path: string; metadata: PathMetadata }): string => {\n\t\t\tif (resource.metadata.source !== \"auto\" && resource.metadata.origin !== \"package\") {\n\t\t\t\treturn resource.path;\n\t\t\t}\n\t\t\ttry {\n\t\t\t\tconst stats = statSync(resource.path);\n\t\t\t\tif (!stats.isDirectory()) {\n\t\t\t\t\treturn resource.path;\n\t\t\t\t}\n\t\t\t} catch {\n\t\t\t\treturn resource.path;\n\t\t\t}\n\t\t\tconst skillFile = join(resource.path, \"SKILL.md\");\n\t\t\tif (existsSync(skillFile)) {\n\t\t\t\tif (!this.pathMetadata.has(skillFile)) {\n\t\t\t\t\tthis.pathMetadata.set(skillFile, resource.metadata);\n\t\t\t\t}\n\t\t\t\treturn skillFile;\n\t\t\t}\n\t\t\treturn resource.path;\n\t\t};\n\n\t\tconst enabledSkills = enabledSkillResources.map(mapSkillPath);\n\n\t\t// Add CLI paths metadata\n\t\tfor (const r of cliExtensionPaths.extensions) {\n\t\t\tif (!this.pathMetadata.has(r.path)) {\n\t\t\t\tthis.pathMetadata.set(r.path, { source: \"cli\", scope: \"temporary\", origin: \"top-level\" });\n\t\t\t}\n\t\t}\n\t\tfor (const r of cliExtensionPaths.skills) {\n\t\t\tif (!this.pathMetadata.has(r.path)) {\n\t\t\t\tthis.pathMetadata.set(r.path, { source: \"cli\", scope: \"temporary\", origin: \"top-level\" });\n\t\t\t}\n\t\t}\n\n\t\tconst cliEnabledExtensions = getEnabledPaths(cliExtensionPaths.extensions);\n\t\tconst cliEnabledSkills = getEnabledPaths(cliExtensionPaths.skills);\n\t\tconst cliEnabledPrompts = getEnabledPaths(cliExtensionPaths.prompts);\n\t\tconst cliEnabledThemes = getEnabledPaths(cliExtensionPaths.themes);\n\n\t\tconst extensionPaths = this.noExtensions\n\t\t\t? cliEnabledExtensions\n\t\t\t: this.mergePaths(cliEnabledExtensions, enabledExtensions);\n\n\t\tconst extensionsResult = await loadExtensions(extensionPaths, this.cwd, this.eventBus);\n\t\tconst inlineExtensions = await this.loadExtensionFactories(extensionsResult.runtime);\n\t\textensionsResult.extensions.push(...inlineExtensions.extensions);\n\t\textensionsResult.errors.push(...inlineExtensions.errors);\n\n\t\t// Detect extension conflicts (tools, commands, flags with same names from different extensions)\n\t\t// Keep all extensions loaded. Conflicts are reported as diagnostics, and precedence is handled by load order.\n\t\tconst conflicts = this.detectExtensionConflicts(extensionsResult.extensions);\n\t\tfor (const conflict of conflicts) {\n\t\t\textensionsResult.errors.push({ path: conflict.path, error: conflict.message });\n\t\t}\n\n\t\tthis.extensionsResult = this.extensionsOverride ? this.extensionsOverride(extensionsResult) : extensionsResult;\n\n\t\tconst skillPaths = this.noSkills\n\t\t\t? this.mergePaths(cliEnabledSkills, this.additionalSkillPaths)\n\t\t\t: this.mergePaths([...enabledSkills, ...cliEnabledSkills], this.additionalSkillPaths);\n\n\t\tthis.lastSkillPaths = skillPaths;\n\t\tthis.updateSkillsFromPaths(skillPaths);\n\n\t\tconst promptPaths = this.noPromptTemplates\n\t\t\t? this.mergePaths(cliEnabledPrompts, this.additionalPromptTemplatePaths)\n\t\t\t: this.mergePaths([...enabledPrompts, ...cliEnabledPrompts], this.additionalPromptTemplatePaths);\n\n\t\tthis.lastPromptPaths = promptPaths;\n\t\tthis.updatePromptsFromPaths(promptPaths);\n\n\t\tconst themePaths = this.noThemes\n\t\t\t? this.mergePaths(cliEnabledThemes, this.additionalThemePaths)\n\t\t\t: this.mergePaths([...enabledThemes, ...cliEnabledThemes], this.additionalThemePaths);\n\n\t\tthis.lastThemePaths = themePaths;\n\t\tthis.updateThemesFromPaths(themePaths);\n\n\t\tfor (const extension of this.extensionsResult.extensions) {\n\t\t\tthis.addDefaultMetadataForPath(extension.path);\n\t\t}\n\n\t\tconst agentsFiles = { agentsFiles: loadProjectContextFiles({ cwd: this.cwd, agentDir: this.agentDir }) };\n\t\tconst resolvedAgentsFiles = this.agentsFilesOverride ? this.agentsFilesOverride(agentsFiles) : agentsFiles;\n\t\tthis.agentsFiles = resolvedAgentsFiles.agentsFiles;\n\n\t\tconst baseSystemPrompt = resolvePromptInput(\n\t\t\tthis.systemPromptSource ?? this.discoverSystemPromptFile(),\n\t\t\t\"system prompt\",\n\t\t);\n\t\tthis.systemPrompt = this.systemPromptOverride ? this.systemPromptOverride(baseSystemPrompt) : baseSystemPrompt;\n\n\t\tconst appendSource = this.appendSystemPromptSource ?? this.discoverAppendSystemPromptFile();\n\t\tconst resolvedAppend = resolvePromptInput(appendSource, \"append system prompt\");\n\t\tconst baseAppend = resolvedAppend ? [resolvedAppend] : [];\n\t\tthis.appendSystemPrompt = this.appendSystemPromptOverride\n\t\t\t? this.appendSystemPromptOverride(baseAppend)\n\t\t\t: baseAppend;\n\t}\n\n\tprivate normalizeExtensionPaths(\n\t\tentries: Array<{ path: string; metadata: PathMetadata }>,\n\t): Array<{ path: string; metadata: PathMetadata }> {\n\t\treturn entries.map((entry) => ({\n\t\t\tpath: this.resolveResourcePath(entry.path),\n\t\t\tmetadata: entry.metadata,\n\t\t}));\n\t}\n\n\tprivate updateSkillsFromPaths(\n\t\tskillPaths: string[],\n\t\textensionPaths: Array<{ path: string; metadata: PathMetadata }> = [],\n\t): void {\n\t\tlet skillsResult: { skills: Skill[]; diagnostics: ResourceDiagnostic[] };\n\t\tif (this.noSkills && skillPaths.length === 0) {\n\t\t\tskillsResult = { skills: [], diagnostics: [] };\n\t\t} else {\n\t\t\tskillsResult = loadSkills({\n\t\t\t\tcwd: this.cwd,\n\t\t\t\tagentDir: this.agentDir,\n\t\t\t\tskillPaths,\n\t\t\t\tincludeDefaults: false,\n\t\t\t});\n\t\t}\n\t\tconst resolvedSkills = this.skillsOverride ? this.skillsOverride(skillsResult) : skillsResult;\n\t\tthis.skills = resolvedSkills.skills;\n\t\tthis.skillDiagnostics = resolvedSkills.diagnostics;\n\t\tthis.applyExtensionMetadata(\n\t\t\textensionPaths,\n\t\t\tthis.skills.map((skill) => skill.filePath),\n\t\t);\n\t\tfor (const skill of this.skills) {\n\t\t\tthis.addDefaultMetadataForPath(skill.filePath);\n\t\t}\n\t}\n\n\tprivate updatePromptsFromPaths(\n\t\tpromptPaths: string[],\n\t\textensionPaths: Array<{ path: string; metadata: PathMetadata }> = [],\n\t): void {\n\t\tlet promptsResult: { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] };\n\t\tif (this.noPromptTemplates && promptPaths.length === 0) {\n\t\t\tpromptsResult = { prompts: [], diagnostics: [] };\n\t\t} else {\n\t\t\tconst allPrompts = loadPromptTemplates({\n\t\t\t\tcwd: this.cwd,\n\t\t\t\tagentDir: this.agentDir,\n\t\t\t\tpromptPaths,\n\t\t\t\tincludeDefaults: false,\n\t\t\t});\n\t\t\tpromptsResult = this.dedupePrompts(allPrompts);\n\t\t}\n\t\tconst resolvedPrompts = this.promptsOverride ? this.promptsOverride(promptsResult) : promptsResult;\n\t\tthis.prompts = resolvedPrompts.prompts;\n\t\tthis.promptDiagnostics = resolvedPrompts.diagnostics;\n\t\tthis.applyExtensionMetadata(\n\t\t\textensionPaths,\n\t\t\tthis.prompts.map((prompt) => prompt.filePath),\n\t\t);\n\t\tfor (const prompt of this.prompts) {\n\t\t\tthis.addDefaultMetadataForPath(prompt.filePath);\n\t\t}\n\t}\n\n\tprivate updateThemesFromPaths(\n\t\tthemePaths: string[],\n\t\textensionPaths: Array<{ path: string; metadata: PathMetadata }> = [],\n\t): void {\n\t\tlet themesResult: { themes: Theme[]; diagnostics: ResourceDiagnostic[] };\n\t\tif (this.noThemes && themePaths.length === 0) {\n\t\t\tthemesResult = { themes: [], diagnostics: [] };\n\t\t} else {\n\t\t\tconst loaded = this.loadThemes(themePaths, false);\n\t\t\tconst deduped = this.dedupeThemes(loaded.themes);\n\t\t\tthemesResult = { themes: deduped.themes, diagnostics: [...loaded.diagnostics, ...deduped.diagnostics] };\n\t\t}\n\t\tconst resolvedThemes = this.themesOverride ? this.themesOverride(themesResult) : themesResult;\n\t\tthis.themes = resolvedThemes.themes;\n\t\tthis.themeDiagnostics = resolvedThemes.diagnostics;\n\t\tconst themePathsWithSource = this.themes.flatMap((theme) => (theme.sourcePath ? [theme.sourcePath] : []));\n\t\tthis.applyExtensionMetadata(extensionPaths, themePathsWithSource);\n\t\tfor (const theme of this.themes) {\n\t\t\tif (theme.sourcePath) {\n\t\t\t\tthis.addDefaultMetadataForPath(theme.sourcePath);\n\t\t\t}\n\t\t}\n\t}\n\n\tprivate applyExtensionMetadata(\n\t\textensionPaths: Array<{ path: string; metadata: PathMetadata }>,\n\t\tresourcePaths: string[],\n\t): void {\n\t\tif (extensionPaths.length === 0) {\n\t\t\treturn;\n\t\t}\n\n\t\tconst normalized = extensionPaths.map((entry) => ({\n\t\t\tpath: resolve(entry.path),\n\t\t\tmetadata: entry.metadata,\n\t\t}));\n\n\t\tfor (const entry of normalized) {\n\t\t\tif (!this.pathMetadata.has(entry.path)) {\n\t\t\t\tthis.pathMetadata.set(entry.path, entry.metadata);\n\t\t\t}\n\t\t}\n\n\t\tfor (const resourcePath of resourcePaths) {\n\t\t\tconst normalizedResourcePath = resolve(resourcePath);\n\t\t\tif (this.pathMetadata.has(normalizedResourcePath) || this.pathMetadata.has(resourcePath)) {\n\t\t\t\tcontinue;\n\t\t\t}\n\t\t\tconst match = normalized.find(\n\t\t\t\t(entry) =>\n\t\t\t\t\tnormalizedResourcePath === entry.path || normalizedResourcePath.startsWith(`${entry.path}${sep}`),\n\t\t\t);\n\t\t\tif (match) {\n\t\t\t\tthis.pathMetadata.set(normalizedResourcePath, match.metadata);\n\t\t\t}\n\t\t}\n\t}\n\n\tprivate mergePaths(primary: string[], additional: string[]): string[] {\n\t\tconst merged: string[] = [];\n\t\tconst seen = new Set<string>();\n\n\t\tfor (const p of [...primary, ...additional]) {\n\t\t\tconst resolved = this.resolveResourcePath(p);\n\t\t\tif (seen.has(resolved)) continue;\n\t\t\tseen.add(resolved);\n\t\t\tmerged.push(resolved);\n\t\t}\n\n\t\treturn merged;\n\t}\n\n\tprivate resolveResourcePath(p: string): string {\n\t\tconst trimmed = p.trim();\n\t\tlet expanded = trimmed;\n\t\tif (trimmed === \"~\") {\n\t\t\texpanded = homedir();\n\t\t} else if (trimmed.startsWith(\"~/\")) {\n\t\t\texpanded = join(homedir(), trimmed.slice(2));\n\t\t} else if (trimmed.startsWith(\"~\")) {\n\t\t\texpanded = join(homedir(), trimmed.slice(1));\n\t\t}\n\t\treturn resolve(this.cwd, expanded);\n\t}\n\n\tprivate loadThemes(\n\t\tpaths: string[],\n\t\tincludeDefaults: boolean = true,\n\t): {\n\t\tthemes: Theme[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t} {\n\t\tconst themes: Theme[] = [];\n\t\tconst diagnostics: ResourceDiagnostic[] = [];\n\t\tif (includeDefaults) {\n\t\t\tconst defaultDirs = [join(this.agentDir, \"themes\"), join(this.cwd, CONFIG_DIR_NAME, \"themes\")];\n\n\t\t\tfor (const dir of defaultDirs) {\n\t\t\t\tthis.loadThemesFromDir(dir, themes, diagnostics);\n\t\t\t}\n\t\t}\n\n\t\tfor (const p of paths) {\n\t\t\tconst resolved = resolve(this.cwd, p);\n\t\t\tif (!existsSync(resolved)) {\n\t\t\t\tdiagnostics.push({ type: \"warning\", message: \"theme path does not exist\", path: resolved });\n\t\t\t\tcontinue;\n\t\t\t}\n\n\t\t\ttry {\n\t\t\t\tconst stats = statSync(resolved);\n\t\t\t\tif (stats.isDirectory()) {\n\t\t\t\t\tthis.loadThemesFromDir(resolved, themes, diagnostics);\n\t\t\t\t} else if (stats.isFile() && resolved.endsWith(\".json\")) {\n\t\t\t\t\tthis.loadThemeFromFile(resolved, themes, diagnostics);\n\t\t\t\t} else {\n\t\t\t\t\tdiagnostics.push({ type: \"warning\", message: \"theme path is not a json file\", path: resolved });\n\t\t\t\t}\n\t\t\t} catch (error) {\n\t\t\t\tconst message = error instanceof Error ? error.message : \"failed to read theme path\";\n\t\t\t\tdiagnostics.push({ type: \"warning\", message, path: resolved });\n\t\t\t}\n\t\t}\n\n\t\treturn { themes, diagnostics };\n\t}\n\n\tprivate loadThemesFromDir(dir: string, themes: Theme[], diagnostics: ResourceDiagnostic[]): void {\n\t\tif (!existsSync(dir)) {\n\t\t\treturn;\n\t\t}\n\n\t\ttry {\n\t\t\tconst entries = readdirSync(dir, { withFileTypes: true });\n\t\t\tfor (const entry of entries) {\n\t\t\t\tlet isFile = entry.isFile();\n\t\t\t\tif (entry.isSymbolicLink()) {\n\t\t\t\t\ttry {\n\t\t\t\t\t\tisFile = statSync(join(dir, entry.name)).isFile();\n\t\t\t\t\t} catch {\n\t\t\t\t\t\tcontinue;\n\t\t\t\t\t}\n\t\t\t\t}\n\t\t\t\tif (!isFile) {\n\t\t\t\t\tcontinue;\n\t\t\t\t}\n\t\t\t\tif (!entry.name.endsWith(\".json\")) {\n\t\t\t\t\tcontinue;\n\t\t\t\t}\n\t\t\t\tthis.loadThemeFromFile(join(dir, entry.name), themes, diagnostics);\n\t\t\t}\n\t\t} catch (error) {\n\t\t\tconst message = error instanceof Error ? error.message : \"failed to read theme directory\";\n\t\t\tdiagnostics.push({ type: \"warning\", message, path: dir });\n\t\t}\n\t}\n\n\tprivate loadThemeFromFile(filePath: string, themes: Theme[], diagnostics: ResourceDiagnostic[]): void {\n\t\ttry {\n\t\t\tthemes.push(loadThemeFromPath(filePath));\n\t\t} catch (error) {\n\t\t\tconst message = error instanceof Error ? error.message : \"failed to load theme\";\n\t\t\tdiagnostics.push({ type: \"warning\", message, path: filePath });\n\t\t}\n\t}\n\n\tprivate async loadExtensionFactories(runtime: ExtensionRuntime): Promise<{\n\t\textensions: Extension[];\n\t\terrors: Array<{ path: string; error: string }>;\n\t}> {\n\t\tconst extensions: Extension[] = [];\n\t\tconst errors: Array<{ path: string; error: string }> = [];\n\n\t\tfor (const [index, factory] of this.extensionFactories.entries()) {\n\t\t\tconst extensionPath = `<inline:${index + 1}>`;\n\t\t\ttry {\n\t\t\t\tconst extension = await loadExtensionFromFactory(factory, this.cwd, this.eventBus, runtime, extensionPath);\n\t\t\t\textensions.push(extension);\n\t\t\t} catch (error) {\n\t\t\t\tconst message = error instanceof Error ? error.message : \"failed to load extension\";\n\t\t\t\terrors.push({ path: extensionPath, error: message });\n\t\t\t}\n\t\t}\n\n\t\treturn { extensions, errors };\n\t}\n\n\tprivate dedupePrompts(prompts: PromptTemplate[]): { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] } {\n\t\tconst seen = new Map<string, PromptTemplate>();\n\t\tconst diagnostics: ResourceDiagnostic[] = [];\n\n\t\tfor (const prompt of prompts) {\n\t\t\tconst existing = seen.get(prompt.name);\n\t\t\tif (existing) {\n\t\t\t\tdiagnostics.push({\n\t\t\t\t\ttype: \"collision\",\n\t\t\t\t\tmessage: `name \"/${prompt.name}\" collision`,\n\t\t\t\t\tpath: prompt.filePath,\n\t\t\t\t\tcollision: {\n\t\t\t\t\t\tresourceType: \"prompt\",\n\t\t\t\t\t\tname: prompt.name,\n\t\t\t\t\t\twinnerPath: existing.filePath,\n\t\t\t\t\t\tloserPath: prompt.filePath,\n\t\t\t\t\t},\n\t\t\t\t});\n\t\t\t} else {\n\t\t\t\tseen.set(prompt.name, prompt);\n\t\t\t}\n\t\t}\n\n\t\treturn { prompts: Array.from(seen.values()), diagnostics };\n\t}\n\n\tprivate dedupeThemes(themes: Theme[]): { themes: Theme[]; diagnostics: ResourceDiagnostic[] } {\n\t\tconst seen = new Map<string, Theme>();\n\t\tconst diagnostics: ResourceDiagnostic[] = [];\n\n\t\tfor (const t of themes) {\n\t\t\tconst name = t.name ?? \"unnamed\";\n\t\t\tconst existing = seen.get(name);\n\t\t\tif (existing) {\n\t\t\t\tdiagnostics.push({\n\t\t\t\t\ttype: \"collision\",\n\t\t\t\t\tmessage: `name \"${name}\" collision`,\n\t\t\t\t\tpath: t.sourcePath,\n\t\t\t\t\tcollision: {\n\t\t\t\t\t\tresourceType: \"theme\",\n\t\t\t\t\t\tname,\n\t\t\t\t\t\twinnerPath: existing.sourcePath ?? \"<builtin>\",\n\t\t\t\t\t\tloserPath: t.sourcePath ?? \"<builtin>\",\n\t\t\t\t\t},\n\t\t\t\t});\n\t\t\t} else {\n\t\t\t\tseen.set(name, t);\n\t\t\t}\n\t\t}\n\n\t\treturn { themes: Array.from(seen.values()), diagnostics };\n\t}\n\n\tprivate discoverSystemPromptFile(): string | undefined {\n\t\tconst projectPath = join(this.cwd, CONFIG_DIR_NAME, \"SYSTEM.md\");\n\t\tif (existsSync(projectPath)) {\n\t\t\treturn projectPath;\n\t\t}\n\n\t\tconst globalPath = join(this.agentDir, \"SYSTEM.md\");\n\t\tif (existsSync(globalPath)) {\n\t\t\treturn globalPath;\n\t\t}\n\n\t\treturn undefined;\n\t}\n\n\tprivate discoverAppendSystemPromptFile(): string | undefined {\n\t\tconst projectPath = join(this.cwd, CONFIG_DIR_NAME, \"APPEND_SYSTEM.md\");\n\t\tif (existsSync(projectPath)) {\n\t\t\treturn projectPath;\n\t\t}\n\n\t\tconst globalPath = join(this.agentDir, \"APPEND_SYSTEM.md\");\n\t\tif (existsSync(globalPath)) {\n\t\t\treturn globalPath;\n\t\t}\n\n\t\treturn undefined;\n\t}\n\n\tprivate addDefaultMetadataForPath(filePath: string): void {\n\t\tif (!filePath || filePath.startsWith(\"<\")) {\n\t\t\treturn;\n\t\t}\n\n\t\tconst normalizedPath = resolve(filePath);\n\t\tif (this.pathMetadata.has(normalizedPath) || this.pathMetadata.has(filePath)) {\n\t\t\treturn;\n\t\t}\n\n\t\tconst agentRoots = [\n\t\t\tjoin(this.agentDir, \"skills\"),\n\t\t\tjoin(this.agentDir, \"prompts\"),\n\t\t\tjoin(this.agentDir, \"themes\"),\n\t\t\tjoin(this.agentDir, \"extensions\"),\n\t\t];\n\t\tconst projectRoots = [\n\t\t\tjoin(this.cwd, CONFIG_DIR_NAME, \"skills\"),\n\t\t\tjoin(this.cwd, CONFIG_DIR_NAME, \"prompts\"),\n\t\t\tjoin(this.cwd, CONFIG_DIR_NAME, \"themes\"),\n\t\t\tjoin(this.cwd, CONFIG_DIR_NAME, \"extensions\"),\n\t\t];\n\n\t\tfor (const root of agentRoots) {\n\t\t\tif (this.isUnderPath(normalizedPath, root)) {\n\t\t\t\tthis.pathMetadata.set(normalizedPath, { source: \"local\", scope: \"user\", origin: \"top-level\" });\n\t\t\t\treturn;\n\t\t\t}\n\t\t}\n\n\t\tfor (const root of projectRoots) {\n\t\t\tif (this.isUnderPath(normalizedPath, root)) {\n\t\t\t\tthis.pathMetadata.set(normalizedPath, { source: \"local\", scope: \"project\", origin: \"top-level\" });\n\t\t\t\treturn;\n\t\t\t}\n\t\t}\n\t}\n\n\tprivate isUnderPath(target: string, root: string): boolean {\n\t\tconst normalizedRoot = resolve(root);\n\t\tif (target === normalizedRoot) {\n\t\t\treturn true;\n\t\t}\n\t\tconst prefix = normalizedRoot.endsWith(sep) ? normalizedRoot : `${normalizedRoot}${sep}`;\n\t\treturn target.startsWith(prefix);\n\t}\n\n\tprivate detectExtensionConflicts(extensions: Extension[]): Array<{ path: string; message: string }> {\n\t\tconst conflicts: Array<{ path: string; message: string }> = [];\n\n\t\t// Track which extension registered each tool, command, and flag\n\t\tconst toolOwners = new Map<string, string>();\n\t\tconst commandOwners = new Map<string, string>();\n\t\tconst flagOwners = new Map<string, string>();\n\n\t\tfor (const ext of extensions) {\n\t\t\t// Check tools\n\t\t\tfor (const toolName of ext.tools.keys()) {\n\t\t\t\tconst existingOwner = toolOwners.get(toolName);\n\t\t\t\tif (existingOwner && existingOwner !== ext.path) {\n\t\t\t\t\tconflicts.push({\n\t\t\t\t\t\tpath: ext.path,\n\t\t\t\t\t\tmessage: `Tool \"${toolName}\" conflicts with ${existingOwner}`,\n\t\t\t\t\t});\n\t\t\t\t} else {\n\t\t\t\t\ttoolOwners.set(toolName, ext.path);\n\t\t\t\t}\n\t\t\t}\n\n\t\t\t// Check commands\n\t\t\tfor (const commandName of ext.commands.keys()) {\n\t\t\t\tconst existingOwner = commandOwners.get(commandName);\n\t\t\t\tif (existingOwner && existingOwner !== ext.path) {\n\t\t\t\t\tconflicts.push({\n\t\t\t\t\t\tpath: ext.path,\n\t\t\t\t\t\tmessage: `Command \"/${commandName}\" conflicts with ${existingOwner}`,\n\t\t\t\t\t});\n\t\t\t\t} else {\n\t\t\t\t\tcommandOwners.set(commandName, ext.path);\n\t\t\t\t}\n\t\t\t}\n\n\t\t\t// Check flags\n\t\t\tfor (const flagName of ext.flags.keys()) {\n\t\t\t\tconst existingOwner = flagOwners.get(flagName);\n\t\t\t\tif (existingOwner && existingOwner !== ext.path) {\n\t\t\t\t\tconflicts.push({\n\t\t\t\t\t\tpath: ext.path,\n\t\t\t\t\t\tmessage: `Flag \"--${flagName}\" conflicts with ${existingOwner}`,\n\t\t\t\t\t});\n\t\t\t\t} else {\n\t\t\t\t\tflagOwners.set(flagName, ext.path);\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\n\t\treturn conflicts;\n\t}\n}\n"]}
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{ existsSync, readdirSync, readFileSync, statSync } from \"node:fs\";\nimport { homedir } from \"node:os\";\nimport { join, resolve, sep } from \"node:path\";\nimport chalk from \"chalk\";\nimport { CONFIG_DIR_NAME, getAgentDir } from \"../config.js\";\nimport { loadThemeFromPath, type Theme } from \"../modes/interactive/theme/theme.js\";\nimport type { ResourceDiagnostic } from \"./diagnostics.js\";\n\nexport type { ResourceCollision, ResourceDiagnostic } from \"./diagnostics.js\";\n\nimport { createEventBus, type EventBus } from \"./event-bus.js\";\nimport { createExtensionRuntime, loadExtensionFromFactory, loadExtensions } from \"./extensions/loader.js\";\nimport type { Extension, ExtensionFactory, ExtensionRuntime, LoadExtensionsResult } from \"./extensions/types.js\";\nimport { DefaultPackageManager, type PathMetadata } from \"./package-manager.js\";\nimport type { PromptTemplate } from \"./prompt-templates.js\";\nimport { loadPromptTemplates } from \"./prompt-templates.js\";\nimport { SettingsManager } from \"./settings-manager.js\";\nimport type { Skill } from \"./skills.js\";\nimport { loadSkills } from \"./skills.js\";\nimport { createSourceInfo, type SourceInfo } from \"./source-info.js\";\n\nexport interface ResourceExtensionPaths {\n\tskillPaths?: Array<{ path: string; metadata: PathMetadata }>;\n\tpromptPaths?: Array<{ path: string; metadata: PathMetadata }>;\n\tthemePaths?: Array<{ path: string; metadata: PathMetadata }>;\n}\n\nexport interface ResourceLoader {\n\tgetExtensions(): LoadExtensionsResult;\n\tgetSkills(): { skills: Skill[]; diagnostics: ResourceDiagnostic[] };\n\tgetPrompts(): { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] };\n\tgetThemes(): { themes: Theme[]; diagnostics: ResourceDiagnostic[] };\n\tgetAgentsFiles(): { agentsFiles: Array<{ path: string; content: string }> };\n\tgetSystemPrompt(): string | undefined;\n\tgetAppendSystemPrompt(): string[];\n\textendResources(paths: ResourceExtensionPaths): void;\n\treload(): Promise<void>;\n}\n\nfunction resolvePromptInput(input: string | undefined, description: string): string | undefined {\n\tif (!input) {\n\t\treturn undefined;\n\t}\n\n\tif (existsSync(input)) {\n\t\ttry {\n\t\t\treturn readFileSync(input, \"utf-8\");\n\t\t} catch (error) {\n\t\t\tconsole.error(chalk.yellow(`Warning: Could not read ${description} file ${input}: ${error}`));\n\t\t\treturn input;\n\t\t}\n\t}\n\n\treturn input;\n}\n\nfunction loadContextFileFromDir(dir: string): { path: string; content: string } | null {\n\tconst candidates = [\"AGENTS.md\", \"CLAUDE.md\"];\n\tfor (const filename of candidates) {\n\t\tconst filePath = join(dir, filename);\n\t\tif (existsSync(filePath)) {\n\t\t\ttry {\n\t\t\t\treturn {\n\t\t\t\t\tpath: filePath,\n\t\t\t\t\tcontent: readFileSync(filePath, \"utf-8\"),\n\t\t\t\t};\n\t\t\t} catch (error) {\n\t\t\t\tconsole.error(chalk.yellow(`Warning: Could not read ${filePath}: ${error}`));\n\t\t\t}\n\t\t}\n\t}\n\treturn null;\n}\n\nfunction loadProjectContextFiles(\n\toptions: { cwd?: string; agentDir?: string } = {},\n): Array<{ path: string; content: string }> {\n\tconst resolvedCwd = options.cwd ?? process.cwd();\n\tconst resolvedAgentDir = options.agentDir ?? getAgentDir();\n\n\tconst contextFiles: Array<{ path: string; content: string }> = [];\n\tconst seenPaths = new Set<string>();\n\n\tconst globalContext = loadContextFileFromDir(resolvedAgentDir);\n\tif (globalContext) {\n\t\tcontextFiles.push(globalContext);\n\t\tseenPaths.add(globalContext.path);\n\t}\n\n\tconst ancestorContextFiles: Array<{ path: string; content: string }> = [];\n\n\tlet currentDir = resolvedCwd;\n\tconst root = resolve(\"/\");\n\n\twhile (true) {\n\t\tconst contextFile = loadContextFileFromDir(currentDir);\n\t\tif (contextFile && !seenPaths.has(contextFile.path)) {\n\t\t\tancestorContextFiles.unshift(contextFile);\n\t\t\tseenPaths.add(contextFile.path);\n\t\t}\n\n\t\tif (currentDir === root) break;\n\n\t\tconst parentDir = resolve(currentDir, \"..\");\n\t\tif (parentDir === currentDir) break;\n\t\tcurrentDir = parentDir;\n\t}\n\n\tcontextFiles.push(...ancestorContextFiles);\n\n\treturn contextFiles;\n}\n\nexport interface DefaultResourceLoaderOptions {\n\tcwd?: string;\n\tagentDir?: string;\n\tsettingsManager?: SettingsManager;\n\teventBus?: EventBus;\n\tadditionalExtensionPaths?: string[];\n\tadditionalSkillPaths?: string[];\n\tadditionalPromptTemplatePaths?: string[];\n\tadditionalThemePaths?: string[];\n\textensionFactories?: ExtensionFactory[];\n\tnoExtensions?: boolean;\n\tnoSkills?: boolean;\n\tnoPromptTemplates?: boolean;\n\tnoThemes?: boolean;\n\tsystemPrompt?: string;\n\tappendSystemPrompt?: string;\n\textensionsOverride?: (base: LoadExtensionsResult) => LoadExtensionsResult;\n\tskillsOverride?: (base: { skills: Skill[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tskills: Skill[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tpromptsOverride?: (base: { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tprompts: PromptTemplate[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tthemesOverride?: (base: { themes: Theme[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tthemes: Theme[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tagentsFilesOverride?: (base: { agentsFiles: Array<{ path: string; content: string }> }) => {\n\t\tagentsFiles: Array<{ path: string; content: string }>;\n\t};\n\tsystemPromptOverride?: (base: string | undefined) => string | undefined;\n\tappendSystemPromptOverride?: (base: string[]) => string[];\n}\n\nexport class DefaultResourceLoader implements ResourceLoader {\n\tprivate cwd: string;\n\tprivate agentDir: string;\n\tprivate settingsManager: SettingsManager;\n\tprivate eventBus: EventBus;\n\tprivate packageManager: DefaultPackageManager;\n\tprivate additionalExtensionPaths: string[];\n\tprivate additionalSkillPaths: string[];\n\tprivate additionalPromptTemplatePaths: string[];\n\tprivate additionalThemePaths: string[];\n\tprivate extensionFactories: ExtensionFactory[];\n\tprivate noExtensions: boolean;\n\tprivate noSkills: boolean;\n\tprivate noPromptTemplates: boolean;\n\tprivate noThemes: boolean;\n\tprivate systemPromptSource?: string;\n\tprivate appendSystemPromptSource?: string;\n\tprivate extensionsOverride?: (base: LoadExtensionsResult) => LoadExtensionsResult;\n\tprivate skillsOverride?: (base: { skills: Skill[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tskills: Skill[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tprivate promptsOverride?: (base: { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tprompts: PromptTemplate[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tprivate themesOverride?: (base: { themes: Theme[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tthemes: Theme[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tprivate agentsFilesOverride?: (base: { agentsFiles: Array<{ path: string; content: string }> }) => {\n\t\tagentsFiles: Array<{ path: string; content: string }>;\n\t};\n\tprivate systemPromptOverride?: (base: string | undefined) => string | undefined;\n\tprivate appendSystemPromptOverride?: (base: string[]) => string[];\n\n\tprivate extensionsResult: LoadExtensionsResult;\n\tprivate skills: Skill[];\n\tprivate skillDiagnostics: ResourceDiagnostic[];\n\tprivate prompts: PromptTemplate[];\n\tprivate promptDiagnostics: ResourceDiagnostic[];\n\tprivate themes: Theme[];\n\tprivate themeDiagnostics: ResourceDiagnostic[];\n\tprivate agentsFiles: Array<{ path: string; content: string }>;\n\tprivate systemPrompt?: string;\n\tprivate appendSystemPrompt: string[];\n\tprivate lastSkillPaths: string[];\n\tprivate extensionSkillSourceInfos: Map<string, SourceInfo>;\n\tprivate extensionPromptSourceInfos: Map<string, SourceInfo>;\n\tprivate extensionThemeSourceInfos: Map<string, SourceInfo>;\n\tprivate lastPromptPaths: string[];\n\tprivate lastThemePaths: string[];\n\n\tconstructor(options: DefaultResourceLoaderOptions) {\n\t\tthis.cwd = options.cwd ?? process.cwd();\n\t\tthis.agentDir = options.agentDir ?? getAgentDir();\n\t\tthis.settingsManager = options.settingsManager ?? SettingsManager.create(this.cwd, this.agentDir);\n\t\tthis.eventBus = options.eventBus ?? createEventBus();\n\t\tthis.packageManager = new DefaultPackageManager({\n\t\t\tcwd: this.cwd,\n\t\t\tagentDir: this.agentDir,\n\t\t\tsettingsManager: this.settingsManager,\n\t\t});\n\t\tthis.additionalExtensionPaths = options.additionalExtensionPaths ?? [];\n\t\tthis.additionalSkillPaths = options.additionalSkillPaths ?? [];\n\t\tthis.additionalPromptTemplatePaths = options.additionalPromptTemplatePaths ?? [];\n\t\tthis.additionalThemePaths = options.additionalThemePaths ?? [];\n\t\tthis.extensionFactories = options.extensionFactories ?? [];\n\t\tthis.noExtensions = options.noExtensions ?? false;\n\t\tthis.noSkills = options.noSkills ?? false;\n\t\tthis.noPromptTemplates = options.noPromptTemplates ?? false;\n\t\tthis.noThemes = options.noThemes ?? false;\n\t\tthis.systemPromptSource = options.systemPrompt;\n\t\tthis.appendSystemPromptSource = options.appendSystemPrompt;\n\t\tthis.extensionsOverride = options.extensionsOverride;\n\t\tthis.skillsOverride = options.skillsOverride;\n\t\tthis.promptsOverride = options.promptsOverride;\n\t\tthis.themesOverride = options.themesOverride;\n\t\tthis.agentsFilesOverride = options.agentsFilesOverride;\n\t\tthis.systemPromptOverride = options.systemPromptOverride;\n\t\tthis.appendSystemPromptOverride = options.appendSystemPromptOverride;\n\n\t\tthis.extensionsResult = { extensions: [], errors: [], runtime: createExtensionRuntime() };\n\t\tthis.skills = [];\n\t\tthis.skillDiagnostics = [];\n\t\tthis.prompts = [];\n\t\tthis.promptDiagnostics = [];\n\t\tthis.themes = [];\n\t\tthis.themeDiagnostics = [];\n\t\tthis.agentsFiles = [];\n\t\tthis.appendSystemPrompt = [];\n\t\tthis.lastSkillPaths = [];\n\t\tthis.extensionSkillSourceInfos = new Map();\n\t\tthis.extensionPromptSourceInfos = new Map();\n\t\tthis.extensionThemeSourceInfos = new Map();\n\t\tthis.lastPromptPaths = [];\n\t\tthis.lastThemePaths = [];\n\t}\n\n\tgetExtensions(): LoadExtensionsResult {\n\t\treturn this.extensionsResult;\n\t}\n\n\tgetSkills(): { skills: Skill[]; diagnostics: ResourceDiagnostic[] } {\n\t\treturn { skills: this.skills, diagnostics: this.skillDiagnostics };\n\t}\n\n\tgetPrompts(): { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] } {\n\t\treturn { prompts: this.prompts, diagnostics: this.promptDiagnostics };\n\t}\n\n\tgetThemes(): { themes: Theme[]; diagnostics: ResourceDiagnostic[] } {\n\t\treturn { themes: this.themes, diagnostics: this.themeDiagnostics };\n\t}\n\n\tgetAgentsFiles(): { agentsFiles: Array<{ path: string; content: string }> } {\n\t\treturn { agentsFiles: this.agentsFiles };\n\t}\n\n\tgetSystemPrompt(): string | undefined {\n\t\treturn this.systemPrompt;\n\t}\n\n\tgetAppendSystemPrompt(): string[] {\n\t\treturn this.appendSystemPrompt;\n\t}\n\n\textendResources(paths: ResourceExtensionPaths): void {\n\t\tconst skillPaths = this.normalizeExtensionPaths(paths.skillPaths ?? []);\n\t\tconst promptPaths = this.normalizeExtensionPaths(paths.promptPaths ?? []);\n\t\tconst themePaths = this.normalizeExtensionPaths(paths.themePaths ?? []);\n\n\t\tfor (const entry of skillPaths) {\n\t\t\tthis.extensionSkillSourceInfos.set(entry.path, createSourceInfo(entry.path, entry.metadata));\n\t\t}\n\t\tfor (const entry of promptPaths) {\n\t\t\tthis.extensionPromptSourceInfos.set(entry.path, createSourceInfo(entry.path, entry.metadata));\n\t\t}\n\t\tfor (const entry of themePaths) {\n\t\t\tthis.extensionThemeSourceInfos.set(entry.path, createSourceInfo(entry.path, entry.metadata));\n\t\t}\n\n\t\tif (skillPaths.length > 0) {\n\t\t\tthis.lastSkillPaths = this.mergePaths(\n\t\t\t\tthis.lastSkillPaths,\n\t\t\t\tskillPaths.map((entry) => entry.path),\n\t\t\t);\n\t\t\tthis.updateSkillsFromPaths(this.lastSkillPaths);\n\t\t}\n\n\t\tif (promptPaths.length > 0) {\n\t\t\tthis.lastPromptPaths = this.mergePaths(\n\t\t\t\tthis.lastPromptPaths,\n\t\t\t\tpromptPaths.map((entry) => entry.path),\n\t\t\t);\n\t\t\tthis.updatePromptsFromPaths(this.lastPromptPaths);\n\t\t}\n\n\t\tif (themePaths.length > 0) {\n\t\t\tthis.lastThemePaths = this.mergePaths(\n\t\t\t\tthis.lastThemePaths,\n\t\t\t\tthemePaths.map((entry) => entry.path),\n\t\t\t);\n\t\t\tthis.updateThemesFromPaths(this.lastThemePaths);\n\t\t}\n\t}\n\n\tasync reload(): Promise<void> {\n\t\tconst resolvedPaths = await this.packageManager.resolve();\n\t\tconst cliExtensionPaths = await this.packageManager.resolveExtensionSources(this.additionalExtensionPaths, {\n\t\t\ttemporary: true,\n\t\t});\n\t\tconst metadataByPath = new Map<string, PathMetadata>();\n\n\t\tthis.extensionSkillSourceInfos = new Map();\n\t\tthis.extensionPromptSourceInfos = new Map();\n\t\tthis.extensionThemeSourceInfos = new Map();\n\n\t\t// Helper to extract enabled paths and store metadata\n\t\tconst getEnabledResources = (\n\t\t\tresources: Array<{ path: string; enabled: boolean; metadata: PathMetadata }>,\n\t\t): Array<{ path: string; enabled: boolean; metadata: PathMetadata }> => {\n\t\t\tfor (const r of resources) {\n\t\t\t\tif (!metadataByPath.has(r.path)) {\n\t\t\t\t\tmetadataByPath.set(r.path, r.metadata);\n\t\t\t\t}\n\t\t\t}\n\t\t\treturn resources.filter((r) => r.enabled);\n\t\t};\n\n\t\tconst getEnabledPaths = (\n\t\t\tresources: Array<{ path: string; enabled: boolean; metadata: PathMetadata }>,\n\t\t): string[] => getEnabledResources(resources).map((r) => r.path);\n\t\tconst enabledExtensions = getEnabledPaths(resolvedPaths.extensions);\n\t\tconst enabledSkillResources = getEnabledResources(resolvedPaths.skills);\n\t\tconst enabledPrompts = getEnabledPaths(resolvedPaths.prompts);\n\t\tconst enabledThemes = getEnabledPaths(resolvedPaths.themes);\n\n\t\tconst mapSkillPath = (resource: { path: string; metadata: PathMetadata }): string => {\n\t\t\tif (resource.metadata.source !== \"auto\" && resource.metadata.origin !== \"package\") {\n\t\t\t\treturn resource.path;\n\t\t\t}\n\t\t\ttry {\n\t\t\t\tconst stats = statSync(resource.path);\n\t\t\t\tif (!stats.isDirectory()) {\n\t\t\t\t\treturn resource.path;\n\t\t\t\t}\n\t\t\t} catch {\n\t\t\t\treturn resource.path;\n\t\t\t}\n\t\t\tconst skillFile = join(resource.path, \"SKILL.md\");\n\t\t\tif (existsSync(skillFile)) {\n\t\t\t\tif (!metadataByPath.has(skillFile)) {\n\t\t\t\t\tmetadataByPath.set(skillFile, resource.metadata);\n\t\t\t\t}\n\t\t\t\treturn skillFile;\n\t\t\t}\n\t\t\treturn resource.path;\n\t\t};\n\n\t\tconst enabledSkills = enabledSkillResources.map(mapSkillPath);\n\n\t\t// Add CLI paths metadata\n\t\tfor (const r of cliExtensionPaths.extensions) {\n\t\t\tif (!metadataByPath.has(r.path)) {\n\t\t\t\tmetadataByPath.set(r.path, { source: \"cli\", scope: \"temporary\", origin: \"top-level\" });\n\t\t\t}\n\t\t}\n\t\tfor (const r of cliExtensionPaths.skills) {\n\t\t\tif (!metadataByPath.has(r.path)) {\n\t\t\t\tmetadataByPath.set(r.path, { source: \"cli\", scope: \"temporary\", origin: \"top-level\" });\n\t\t\t}\n\t\t}\n\n\t\tconst cliEnabledExtensions = getEnabledPaths(cliExtensionPaths.extensions);\n\t\tconst cliEnabledSkills = getEnabledPaths(cliExtensionPaths.skills);\n\t\tconst cliEnabledPrompts = getEnabledPaths(cliExtensionPaths.prompts);\n\t\tconst cliEnabledThemes = getEnabledPaths(cliExtensionPaths.themes);\n\n\t\tconst extensionPaths = this.noExtensions\n\t\t\t? cliEnabledExtensions\n\t\t\t: this.mergePaths(cliEnabledExtensions, enabledExtensions);\n\n\t\tconst extensionsResult = await loadExtensions(extensionPaths, this.cwd, this.eventBus);\n\t\tconst inlineExtensions = await this.loadExtensionFactories(extensionsResult.runtime);\n\t\textensionsResult.extensions.push(...inlineExtensions.extensions);\n\t\textensionsResult.errors.push(...inlineExtensions.errors);\n\n\t\t// Detect extension conflicts (tools, commands, flags with same names from different extensions)\n\t\t// Keep all extensions loaded. Conflicts are reported as diagnostics, and precedence is handled by load order.\n\t\tconst conflicts = this.detectExtensionConflicts(extensionsResult.extensions);\n\t\tfor (const conflict of conflicts) {\n\t\t\textensionsResult.errors.push({ path: conflict.path, error: conflict.message });\n\t\t}\n\n\t\tthis.extensionsResult = this.extensionsOverride ? this.extensionsOverride(extensionsResult) : extensionsResult;\n\t\tthis.applyExtensionSourceInfo(this.extensionsResult.extensions, metadataByPath);\n\n\t\tconst skillPaths = this.noSkills\n\t\t\t? this.mergePaths(cliEnabledSkills, this.additionalSkillPaths)\n\t\t\t: this.mergePaths([...enabledSkills, ...cliEnabledSkills], this.additionalSkillPaths);\n\n\t\tthis.lastSkillPaths = skillPaths;\n\t\tthis.updateSkillsFromPaths(skillPaths, metadataByPath);\n\n\t\tconst promptPaths = this.noPromptTemplates\n\t\t\t? this.mergePaths(cliEnabledPrompts, this.additionalPromptTemplatePaths)\n\t\t\t: this.mergePaths([...enabledPrompts, ...cliEnabledPrompts], this.additionalPromptTemplatePaths);\n\n\t\tthis.lastPromptPaths = promptPaths;\n\t\tthis.updatePromptsFromPaths(promptPaths, metadataByPath);\n\n\t\tconst themePaths = this.noThemes\n\t\t\t? this.mergePaths(cliEnabledThemes, this.additionalThemePaths)\n\t\t\t: this.mergePaths([...enabledThemes, ...cliEnabledThemes], this.additionalThemePaths);\n\n\t\tthis.lastThemePaths = themePaths;\n\t\tthis.updateThemesFromPaths(themePaths, metadataByPath);\n\n\t\tconst agentsFiles = { agentsFiles: loadProjectContextFiles({ cwd: this.cwd, agentDir: this.agentDir }) };\n\t\tconst resolvedAgentsFiles = this.agentsFilesOverride ? this.agentsFilesOverride(agentsFiles) : agentsFiles;\n\t\tthis.agentsFiles = resolvedAgentsFiles.agentsFiles;\n\n\t\tconst baseSystemPrompt = resolvePromptInput(\n\t\t\tthis.systemPromptSource ?? this.discoverSystemPromptFile(),\n\t\t\t\"system prompt\",\n\t\t);\n\t\tthis.systemPrompt = this.systemPromptOverride ? this.systemPromptOverride(baseSystemPrompt) : baseSystemPrompt;\n\n\t\tconst appendSource = this.appendSystemPromptSource ?? this.discoverAppendSystemPromptFile();\n\t\tconst resolvedAppend = resolvePromptInput(appendSource, \"append system prompt\");\n\t\tconst baseAppend = resolvedAppend ? [resolvedAppend] : [];\n\t\tthis.appendSystemPrompt = this.appendSystemPromptOverride\n\t\t\t? this.appendSystemPromptOverride(baseAppend)\n\t\t\t: baseAppend;\n\t}\n\n\tprivate normalizeExtensionPaths(\n\t\tentries: Array<{ path: string; metadata: PathMetadata }>,\n\t): Array<{ path: string; metadata: PathMetadata }> {\n\t\treturn entries.map((entry) => ({\n\t\t\tpath: this.resolveResourcePath(entry.path),\n\t\t\tmetadata: entry.metadata,\n\t\t}));\n\t}\n\n\tprivate updateSkillsFromPaths(skillPaths: string[], metadataByPath?: Map<string, PathMetadata>): void {\n\t\tlet skillsResult: { skills: Skill[]; diagnostics: ResourceDiagnostic[] };\n\t\tif (this.noSkills && skillPaths.length === 0) {\n\t\t\tskillsResult = { skills: [], diagnostics: [] };\n\t\t} else {\n\t\t\tskillsResult = loadSkills({\n\t\t\t\tcwd: this.cwd,\n\t\t\t\tagentDir: this.agentDir,\n\t\t\t\tskillPaths,\n\t\t\t\tincludeDefaults: false,\n\t\t\t});\n\t\t}\n\t\tconst resolvedSkills = this.skillsOverride ? this.skillsOverride(skillsResult) : skillsResult;\n\t\tthis.skills = resolvedSkills.skills.map((skill) => ({\n\t\t\t...skill,\n\t\t\tsourceInfo:\n\t\t\t\tthis.findSourceInfoForPath(skill.filePath, this.extensionSkillSourceInfos, metadataByPath) ??\n\t\t\t\tskill.sourceInfo ??\n\t\t\t\tthis.getDefaultSourceInfoForPath(skill.filePath),\n\t\t}));\n\t\tthis.skillDiagnostics = resolvedSkills.diagnostics;\n\t}\n\n\tprivate updatePromptsFromPaths(promptPaths: string[], metadataByPath?: Map<string, PathMetadata>): void {\n\t\tlet promptsResult: { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] };\n\t\tif (this.noPromptTemplates && promptPaths.length === 0) {\n\t\t\tpromptsResult = { prompts: [], diagnostics: [] };\n\t\t} else {\n\t\t\tconst allPrompts = loadPromptTemplates({\n\t\t\t\tcwd: this.cwd,\n\t\t\t\tagentDir: this.agentDir,\n\t\t\t\tpromptPaths,\n\t\t\t\tincludeDefaults: false,\n\t\t\t});\n\t\t\tpromptsResult = this.dedupePrompts(allPrompts);\n\t\t}\n\t\tconst resolvedPrompts = this.promptsOverride ? this.promptsOverride(promptsResult) : promptsResult;\n\t\tthis.prompts = resolvedPrompts.prompts.map((prompt) => ({\n\t\t\t...prompt,\n\t\t\tsourceInfo:\n\t\t\t\tthis.findSourceInfoForPath(prompt.filePath, this.extensionPromptSourceInfos, metadataByPath) ??\n\t\t\t\tprompt.sourceInfo ??\n\t\t\t\tthis.getDefaultSourceInfoForPath(prompt.filePath),\n\t\t}));\n\t\tthis.promptDiagnostics = resolvedPrompts.diagnostics;\n\t}\n\n\tprivate updateThemesFromPaths(themePaths: string[], metadataByPath?: Map<string, PathMetadata>): void {\n\t\tlet themesResult: { themes: Theme[]; diagnostics: ResourceDiagnostic[] };\n\t\tif (this.noThemes && themePaths.length === 0) {\n\t\t\tthemesResult = { themes: [], diagnostics: [] };\n\t\t} else {\n\t\t\tconst loaded = this.loadThemes(themePaths, false);\n\t\t\tconst deduped = this.dedupeThemes(loaded.themes);\n\t\t\tthemesResult = { themes: deduped.themes, diagnostics: [...loaded.diagnostics, ...deduped.diagnostics] };\n\t\t}\n\t\tconst resolvedThemes = this.themesOverride ? this.themesOverride(themesResult) : themesResult;\n\t\tthis.themes = resolvedThemes.themes.map((theme) => {\n\t\t\tconst sourcePath = theme.sourcePath;\n\t\t\ttheme.sourceInfo = sourcePath\n\t\t\t\t? (this.findSourceInfoForPath(sourcePath, this.extensionThemeSourceInfos, metadataByPath) ??\n\t\t\t\t\ttheme.sourceInfo ??\n\t\t\t\t\tthis.getDefaultSourceInfoForPath(sourcePath))\n\t\t\t\t: theme.sourceInfo;\n\t\t\treturn theme;\n\t\t});\n\t\tthis.themeDiagnostics = resolvedThemes.diagnostics;\n\t}\n\n\tprivate applyExtensionSourceInfo(extensions: Extension[], metadataByPath: Map<string, PathMetadata>): void {\n\t\tfor (const extension of extensions) {\n\t\t\textension.sourceInfo =\n\t\t\t\tthis.findSourceInfoForPath(extension.path, undefined, metadataByPath) ??\n\t\t\t\tthis.getDefaultSourceInfoForPath(extension.path);\n\t\t\tfor (const command of extension.commands.values()) {\n\t\t\t\tcommand.sourceInfo = extension.sourceInfo;\n\t\t\t}\n\t\t\tfor (const tool of extension.tools.values()) {\n\t\t\t\ttool.sourceInfo = extension.sourceInfo;\n\t\t\t}\n\t\t}\n\t}\n\n\tprivate findSourceInfoForPath(\n\t\tresourcePath: string,\n\t\textraSourceInfos?: Map<string, SourceInfo>,\n\t\tmetadataByPath?: Map<string, PathMetadata>,\n\t): SourceInfo | undefined {\n\t\tif (!resourcePath) {\n\t\t\treturn undefined;\n\t\t}\n\n\t\tif (resourcePath.startsWith(\"<\")) {\n\t\t\treturn this.getDefaultSourceInfoForPath(resourcePath);\n\t\t}\n\n\t\tconst normalizedResourcePath = resolve(resourcePath);\n\t\tif (extraSourceInfos) {\n\t\t\tfor (const [sourcePath, sourceInfo] of extraSourceInfos.entries()) {\n\t\t\t\tconst normalizedSourcePath = resolve(sourcePath);\n\t\t\t\tif (\n\t\t\t\t\tnormalizedResourcePath === normalizedSourcePath ||\n\t\t\t\t\tnormalizedResourcePath.startsWith(`${normalizedSourcePath}${sep}`)\n\t\t\t\t) {\n\t\t\t\t\treturn { ...sourceInfo, path: resourcePath };\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\n\t\tif (metadataByPath) {\n\t\t\tconst exact = metadataByPath.get(normalizedResourcePath) ?? metadataByPath.get(resourcePath);\n\t\t\tif (exact) {\n\t\t\t\treturn createSourceInfo(resourcePath, exact);\n\t\t\t}\n\n\t\t\tfor (const [sourcePath, metadata] of metadataByPath.entries()) {\n\t\t\t\tconst normalizedSourcePath = resolve(sourcePath);\n\t\t\t\tif (\n\t\t\t\t\tnormalizedResourcePath === normalizedSourcePath ||\n\t\t\t\t\tnormalizedResourcePath.startsWith(`${normalizedSourcePath}${sep}`)\n\t\t\t\t) {\n\t\t\t\t\treturn createSourceInfo(resourcePath, metadata);\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\n\t\treturn undefined;\n\t}\n\n\tprivate getDefaultSourceInfoForPath(filePath: string): SourceInfo {\n\t\tif (filePath.startsWith(\"<\") && filePath.endsWith(\">\")) {\n\t\t\treturn {\n\t\t\t\tpath: filePath,\n\t\t\t\tsource: filePath.slice(1, -1).split(\":\")[0] || \"temporary\",\n\t\t\t\tscope: \"temporary\",\n\t\t\t\torigin: \"top-level\",\n\t\t\t};\n\t\t}\n\n\t\tconst normalizedPath = resolve(filePath);\n\t\tconst agentRoots = [\n\t\t\tjoin(this.agentDir, \"skills\"),\n\t\t\tjoin(this.agentDir, \"prompts\"),\n\t\t\tjoin(this.agentDir, \"themes\"),\n\t\t\tjoin(this.agentDir, \"extensions\"),\n\t\t];\n\t\tconst projectRoots = [\n\t\t\tjoin(this.cwd, CONFIG_DIR_NAME, \"skills\"),\n\t\t\tjoin(this.cwd, CONFIG_DIR_NAME, \"prompts\"),\n\t\t\tjoin(this.cwd, CONFIG_DIR_NAME, \"themes\"),\n\t\t\tjoin(this.cwd, CONFIG_DIR_NAME, \"extensions\"),\n\t\t];\n\n\t\tfor (const root of agentRoots) {\n\t\t\tif (this.isUnderPath(normalizedPath, root)) {\n\t\t\t\treturn { path: filePath, source: \"local\", scope: \"user\", origin: \"top-level\", baseDir: root };\n\t\t\t}\n\t\t}\n\n\t\tfor (const root of projectRoots) {\n\t\t\tif (this.isUnderPath(normalizedPath, root)) {\n\t\t\t\treturn { path: filePath, source: \"local\", scope: \"project\", origin: \"top-level\", baseDir: root };\n\t\t\t}\n\t\t}\n\n\t\treturn {\n\t\t\tpath: filePath,\n\t\t\tsource: \"local\",\n\t\t\tscope: \"temporary\",\n\t\t\torigin: \"top-level\",\n\t\t\tbaseDir: statSync(normalizedPath).isDirectory() ? normalizedPath : resolve(normalizedPath, \"..\"),\n\t\t};\n\t}\n\n\tprivate mergePaths(primary: string[], additional: string[]): string[] {\n\t\tconst merged: string[] = [];\n\t\tconst seen = new Set<string>();\n\n\t\tfor (const p of [...primary, ...additional]) {\n\t\t\tconst resolved = this.resolveResourcePath(p);\n\t\t\tif (seen.has(resolved)) continue;\n\t\t\tseen.add(resolved);\n\t\t\tmerged.push(resolved);\n\t\t}\n\n\t\treturn merged;\n\t}\n\n\tprivate resolveResourcePath(p: string): string {\n\t\tconst trimmed = p.trim();\n\t\tlet expanded = trimmed;\n\t\tif (trimmed === \"~\") {\n\t\t\texpanded = homedir();\n\t\t} else if (trimmed.startsWith(\"~/\")) {\n\t\t\texpanded = join(homedir(), trimmed.slice(2));\n\t\t} else if (trimmed.startsWith(\"~\")) {\n\t\t\texpanded = join(homedir(), trimmed.slice(1));\n\t\t}\n\t\treturn resolve(this.cwd, expanded);\n\t}\n\n\tprivate loadThemes(\n\t\tpaths: string[],\n\t\tincludeDefaults: boolean = true,\n\t): {\n\t\tthemes: Theme[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t} {\n\t\tconst themes: Theme[] = [];\n\t\tconst diagnostics: ResourceDiagnostic[] = [];\n\t\tif (includeDefaults) {\n\t\t\tconst defaultDirs = [join(this.agentDir, \"themes\"), join(this.cwd, CONFIG_DIR_NAME, \"themes\")];\n\n\t\t\tfor (const dir of defaultDirs) {\n\t\t\t\tthis.loadThemesFromDir(dir, themes, diagnostics);\n\t\t\t}\n\t\t}\n\n\t\tfor (const p of paths) {\n\t\t\tconst resolved = resolve(this.cwd, p);\n\t\t\tif (!existsSync(resolved)) {\n\t\t\t\tdiagnostics.push({ type: \"warning\", message: \"theme path does not exist\", path: resolved });\n\t\t\t\tcontinue;\n\t\t\t}\n\n\t\t\ttry {\n\t\t\t\tconst stats = statSync(resolved);\n\t\t\t\tif (stats.isDirectory()) {\n\t\t\t\t\tthis.loadThemesFromDir(resolved, themes, diagnostics);\n\t\t\t\t} else if (stats.isFile() && resolved.endsWith(\".json\")) {\n\t\t\t\t\tthis.loadThemeFromFile(resolved, themes, diagnostics);\n\t\t\t\t} else {\n\t\t\t\t\tdiagnostics.push({ type: \"warning\", message: \"theme path is not a json file\", path: resolved });\n\t\t\t\t}\n\t\t\t} catch (error) {\n\t\t\t\tconst message = error instanceof Error ? error.message : \"failed to read theme path\";\n\t\t\t\tdiagnostics.push({ type: \"warning\", message, path: resolved });\n\t\t\t}\n\t\t}\n\n\t\treturn { themes, diagnostics };\n\t}\n\n\tprivate loadThemesFromDir(dir: string, themes: Theme[], diagnostics: ResourceDiagnostic[]): void {\n\t\tif (!existsSync(dir)) {\n\t\t\treturn;\n\t\t}\n\n\t\ttry {\n\t\t\tconst entries = readdirSync(dir, { withFileTypes: true });\n\t\t\tfor (const entry of entries) {\n\t\t\t\tlet isFile = entry.isFile();\n\t\t\t\tif (entry.isSymbolicLink()) {\n\t\t\t\t\ttry {\n\t\t\t\t\t\tisFile = statSync(join(dir, entry.name)).isFile();\n\t\t\t\t\t} catch {\n\t\t\t\t\t\tcontinue;\n\t\t\t\t\t}\n\t\t\t\t}\n\t\t\t\tif (!isFile) {\n\t\t\t\t\tcontinue;\n\t\t\t\t}\n\t\t\t\tif (!entry.name.endsWith(\".json\")) {\n\t\t\t\t\tcontinue;\n\t\t\t\t}\n\t\t\t\tthis.loadThemeFromFile(join(dir, entry.name), themes, diagnostics);\n\t\t\t}\n\t\t} catch (error) {\n\t\t\tconst message = error instanceof Error ? error.message : \"failed to read theme directory\";\n\t\t\tdiagnostics.push({ type: \"warning\", message, path: dir });\n\t\t}\n\t}\n\n\tprivate loadThemeFromFile(filePath: string, themes: Theme[], diagnostics: ResourceDiagnostic[]): void {\n\t\ttry {\n\t\t\tthemes.push(loadThemeFromPath(filePath));\n\t\t} catch (error) {\n\t\t\tconst message = error instanceof Error ? error.message : \"failed to load theme\";\n\t\t\tdiagnostics.push({ type: \"warning\", message, path: filePath });\n\t\t}\n\t}\n\n\tprivate async loadExtensionFactories(runtime: ExtensionRuntime): Promise<{\n\t\textensions: Extension[];\n\t\terrors: Array<{ path: string; error: string }>;\n\t}> {\n\t\tconst extensions: Extension[] = [];\n\t\tconst errors: Array<{ path: string; error: string }> = [];\n\n\t\tfor (const [index, factory] of this.extensionFactories.entries()) {\n\t\t\tconst extensionPath = `<inline:${index + 1}>`;\n\t\t\ttry {\n\t\t\t\tconst extension = await loadExtensionFromFactory(factory, this.cwd, this.eventBus, runtime, extensionPath);\n\t\t\t\textensions.push(extension);\n\t\t\t} catch (error) {\n\t\t\t\tconst message = error instanceof Error ? error.message : \"failed to load extension\";\n\t\t\t\terrors.push({ path: extensionPath, error: message });\n\t\t\t}\n\t\t}\n\n\t\treturn { extensions, errors };\n\t}\n\n\tprivate dedupePrompts(prompts: PromptTemplate[]): { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] } {\n\t\tconst seen = new Map<string, PromptTemplate>();\n\t\tconst diagnostics: ResourceDiagnostic[] = [];\n\n\t\tfor (const prompt of prompts) {\n\t\t\tconst existing = seen.get(prompt.name);\n\t\t\tif (existing) {\n\t\t\t\tdiagnostics.push({\n\t\t\t\t\ttype: \"collision\",\n\t\t\t\t\tmessage: `name \"/${prompt.name}\" collision`,\n\t\t\t\t\tpath: prompt.filePath,\n\t\t\t\t\tcollision: {\n\t\t\t\t\t\tresourceType: \"prompt\",\n\t\t\t\t\t\tname: prompt.name,\n\t\t\t\t\t\twinnerPath: existing.filePath,\n\t\t\t\t\t\tloserPath: prompt.filePath,\n\t\t\t\t\t},\n\t\t\t\t});\n\t\t\t} else {\n\t\t\t\tseen.set(prompt.name, prompt);\n\t\t\t}\n\t\t}\n\n\t\treturn { prompts: Array.from(seen.values()), diagnostics };\n\t}\n\n\tprivate dedupeThemes(themes: Theme[]): { themes: Theme[]; diagnostics: ResourceDiagnostic[] } {\n\t\tconst seen = new Map<string, Theme>();\n\t\tconst diagnostics: ResourceDiagnostic[] = [];\n\n\t\tfor (const t of themes) {\n\t\t\tconst name = t.name ?? \"unnamed\";\n\t\t\tconst existing = seen.get(name);\n\t\t\tif (existing) {\n\t\t\t\tdiagnostics.push({\n\t\t\t\t\ttype: \"collision\",\n\t\t\t\t\tmessage: `name \"${name}\" collision`,\n\t\t\t\t\tpath: t.sourcePath,\n\t\t\t\t\tcollision: {\n\t\t\t\t\t\tresourceType: \"theme\",\n\t\t\t\t\t\tname,\n\t\t\t\t\t\twinnerPath: existing.sourcePath ?? \"<builtin>\",\n\t\t\t\t\t\tloserPath: t.sourcePath ?? \"<builtin>\",\n\t\t\t\t\t},\n\t\t\t\t});\n\t\t\t} else {\n\t\t\t\tseen.set(name, t);\n\t\t\t}\n\t\t}\n\n\t\treturn { themes: Array.from(seen.values()), diagnostics };\n\t}\n\n\tprivate discoverSystemPromptFile(): string | undefined {\n\t\tconst projectPath = join(this.cwd, CONFIG_DIR_NAME, \"SYSTEM.md\");\n\t\tif (existsSync(projectPath)) {\n\t\t\treturn projectPath;\n\t\t}\n\n\t\tconst globalPath = join(this.agentDir, \"SYSTEM.md\");\n\t\tif (existsSync(globalPath)) {\n\t\t\treturn globalPath;\n\t\t}\n\n\t\treturn undefined;\n\t}\n\n\tprivate discoverAppendSystemPromptFile(): string | undefined {\n\t\tconst projectPath = join(this.cwd, CONFIG_DIR_NAME, \"APPEND_SYSTEM.md\");\n\t\tif (existsSync(projectPath)) {\n\t\t\treturn projectPath;\n\t\t}\n\n\t\tconst globalPath = join(this.agentDir, \"APPEND_SYSTEM.md\");\n\t\tif (existsSync(globalPath)) {\n\t\t\treturn globalPath;\n\t\t}\n\n\t\treturn undefined;\n\t}\n\n\tprivate isUnderPath(target: string, root: string): boolean {\n\t\tconst normalizedRoot = resolve(root);\n\t\tif (target === normalizedRoot) {\n\t\t\treturn true;\n\t\t}\n\t\tconst prefix = normalizedRoot.endsWith(sep) ? normalizedRoot : `${normalizedRoot}${sep}`;\n\t\treturn target.startsWith(prefix);\n\t}\n\n\tprivate detectExtensionConflicts(extensions: Extension[]): Array<{ path: string; message: string }> {\n\t\tconst conflicts: Array<{ path: string; message: string }> = [];\n\n\t\t// Track which extension registered each tool and flag\n\t\tconst toolOwners = new Map<string, string>();\n\t\tconst flagOwners = new Map<string, string>();\n\n\t\tfor (const ext of extensions) {\n\t\t\t// Check tools\n\t\t\tfor (const toolName of ext.tools.keys()) {\n\t\t\t\tconst existingOwner = toolOwners.get(toolName);\n\t\t\t\tif (existingOwner && existingOwner !== ext.path) {\n\t\t\t\t\tconflicts.push({\n\t\t\t\t\t\tpath: ext.path,\n\t\t\t\t\t\tmessage: `Tool \"${toolName}\" conflicts with ${existingOwner}`,\n\t\t\t\t\t});\n\t\t\t\t} else {\n\t\t\t\t\ttoolOwners.set(toolName, ext.path);\n\t\t\t\t}\n\t\t\t}\n\n\t\t\t// Check flags\n\t\t\tfor (const flagName of ext.flags.keys()) {\n\t\t\t\tconst existingOwner = flagOwners.get(flagName);\n\t\t\t\tif (existingOwner && existingOwner !== ext.path) {\n\t\t\t\t\tconflicts.push({\n\t\t\t\t\t\tpath: ext.path,\n\t\t\t\t\t\tmessage: `Flag \"--${flagName}\" conflicts with ${existingOwner}`,\n\t\t\t\t\t});\n\t\t\t\t} else {\n\t\t\t\t\tflagOwners.set(flagName, ext.path);\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\n\t\treturn conflicts;\n\t}\n}\n"]}