@hestia-earth/data-validation 0.37.7

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Files changed (410) hide show
  1. package/.coveragerc +14 -0
  2. package/.dockerignore +19 -0
  3. package/.eslintignore +17 -0
  4. package/.eslintrc.js +11 -0
  5. package/.flake8 +5 -0
  6. package/.gitlab/issue_templates/new validation.md +82 -0
  7. package/.gitlab-ci.yml +216 -0
  8. package/.readthedocs.yml +24 -0
  9. package/CODEOWNERS +11 -0
  10. package/Dockerfile +13 -0
  11. package/LICENSE +21 -0
  12. package/MANIFEST.in +2 -0
  13. package/bin/hestia-validate-data +80 -0
  14. package/build_mocking.py +14 -0
  15. package/commitlint.config.js +1 -0
  16. package/docs/Makefile +20 -0
  17. package/docs/_static/styles.css +4 -0
  18. package/docs/_templates/custom-class-template.rst +34 -0
  19. package/docs/_templates/custom-module-template.rst +66 -0
  20. package/docs/_templates/layout.html +4 -0
  21. package/docs/conf.py +74 -0
  22. package/docs/index.rst +42 -0
  23. package/docs/make.bat +35 -0
  24. package/docs/requirements.txt +13 -0
  25. package/envs/.develop.env +1 -0
  26. package/envs/.master.env +1 -0
  27. package/guide-assets/.gitkeep +0 -0
  28. package/hestia_earth/validation/README.md +5 -0
  29. package/hestia_earth/validation/__init__.py +32 -0
  30. package/hestia_earth/validation/distribution.py +22 -0
  31. package/hestia_earth/validation/gee.py +162 -0
  32. package/hestia_earth/validation/log.py +44 -0
  33. package/hestia_earth/validation/models.py +141 -0
  34. package/hestia_earth/validation/preload_requests.py +61 -0
  35. package/hestia_earth/validation/terms.py +88 -0
  36. package/hestia_earth/validation/utils.py +444 -0
  37. package/hestia_earth/validation/validators/__init__.py +141 -0
  38. package/hestia_earth/validation/validators/aggregated_cycle.py +32 -0
  39. package/hestia_earth/validation/validators/aggregated_shared.py +37 -0
  40. package/hestia_earth/validation/validators/animal.py +88 -0
  41. package/hestia_earth/validation/validators/completeness.py +252 -0
  42. package/hestia_earth/validation/validators/cycle.py +1123 -0
  43. package/hestia_earth/validation/validators/distribution.py +86 -0
  44. package/hestia_earth/validation/validators/emission.py +109 -0
  45. package/hestia_earth/validation/validators/impact_assessment.py +138 -0
  46. package/hestia_earth/validation/validators/indicator.py +154 -0
  47. package/hestia_earth/validation/validators/infrastructure.py +25 -0
  48. package/hestia_earth/validation/validators/input.py +268 -0
  49. package/hestia_earth/validation/validators/management.py +131 -0
  50. package/hestia_earth/validation/validators/measurement.py +368 -0
  51. package/hestia_earth/validation/validators/organisation.py +43 -0
  52. package/hestia_earth/validation/validators/practice.py +590 -0
  53. package/hestia_earth/validation/validators/product.py +263 -0
  54. package/hestia_earth/validation/validators/property.py +266 -0
  55. package/hestia_earth/validation/validators/shared.py +940 -0
  56. package/hestia_earth/validation/validators/site.py +312 -0
  57. package/hestia_earth/validation/validators/source.py +20 -0
  58. package/hestia_earth/validation/validators/transformation.py +250 -0
  59. package/hestia_earth/validation/version.py +1 -0
  60. package/layer/build.sh +34 -0
  61. package/layer/deploy.sh +18 -0
  62. package/package.json +59 -0
  63. package/release.sh +11 -0
  64. package/requirements-ci.txt +6 -0
  65. package/requirements-test.txt +4 -0
  66. package/requirements.txt +2 -0
  67. package/run-docker-test.sh +7 -0
  68. package/run-docker.sh +9 -0
  69. package/run.py +99 -0
  70. package/scripts/build_docs.py +283 -0
  71. package/scripts/build_validation_list.py +160 -0
  72. package/scripts/guide-create-branch.sh +15 -0
  73. package/scripts/update-package-version.js +28 -0
  74. package/search-results.json +384 -0
  75. package/setup.cfg +2 -0
  76. package/setup.py +35 -0
  77. package/src/index.ts +1 -0
  78. package/src/validations.ts +22 -0
  79. package/src/version.ts +1 -0
  80. package/tests/Dockerfile +13 -0
  81. package/tests/__init__.py +3 -0
  82. package/tests/fixtures/aggregated/cycle/inputs-impactAssessment/invalid-no-impactAssessment.json +64 -0
  83. package/tests/fixtures/aggregated/cycle/inputs-impactAssessment/invalid-world.json +69 -0
  84. package/tests/fixtures/aggregated/cycle/inputs-impactAssessment/valid.json +69 -0
  85. package/tests/fixtures/animal/duplicated-input-cycle/invalid.json +98 -0
  86. package/tests/fixtures/animal/duplicated-input-cycle/valid.json +91 -0
  87. package/tests/fixtures/animal/pregnancyRateTotal/invalid.json +49 -0
  88. package/tests/fixtures/animal/pregnancyRateTotal/valid.json +60 -0
  89. package/tests/fixtures/animal/required/invalid.json +59 -0
  90. package/tests/fixtures/animal/required/valid.json +72 -0
  91. package/tests/fixtures/completeness/all-values/warning.json +22 -0
  92. package/tests/fixtures/completeness/animalPopulation/invalid.json +58 -0
  93. package/tests/fixtures/completeness/animalPopulation/valid-animals.json +71 -0
  94. package/tests/fixtures/completeness/animalPopulation/valid-incomplete.json +58 -0
  95. package/tests/fixtures/completeness/animalPopulation/valid-no-liveAnimals.json +37 -0
  96. package/tests/fixtures/completeness/blank-nodes/agri-food processor-invalid.json +52 -0
  97. package/tests/fixtures/completeness/blank-nodes/invalid.json +124 -0
  98. package/tests/fixtures/completeness/blank-nodes/valid.json +128 -0
  99. package/tests/fixtures/completeness/cropland/site.json +16 -0
  100. package/tests/fixtures/completeness/cropland/valid.json +22 -0
  101. package/tests/fixtures/completeness/cropland/warning.json +22 -0
  102. package/tests/fixtures/completeness/freshForage/error-animals.json +63 -0
  103. package/tests/fixtures/completeness/freshForage/error-products.json +65 -0
  104. package/tests/fixtures/completeness/freshForage/valid-animal-inputs.json +63 -0
  105. package/tests/fixtures/completeness/freshForage/valid-animals.json +63 -0
  106. package/tests/fixtures/completeness/freshForage/valid-not-grazing-liveAnimal.json +55 -0
  107. package/tests/fixtures/completeness/freshForage/valid-not-liveAnimal.json +47 -0
  108. package/tests/fixtures/completeness/freshForage/valid-products.json +68 -0
  109. package/tests/fixtures/completeness/ingredient/invalid-agri-food-processor.json +37 -0
  110. package/tests/fixtures/completeness/ingredient/invalid.json +49 -0
  111. package/tests/fixtures/completeness/ingredient/valid-agri-food-processor-complete.json +49 -0
  112. package/tests/fixtures/completeness/ingredient/valid-agri-food-processor-incomplete.json +37 -0
  113. package/tests/fixtures/completeness/ingredient/valid.json +49 -0
  114. package/tests/fixtures/completeness/material/error.json +49 -0
  115. package/tests/fixtures/completeness/material/valid-fuel-material.json +60 -0
  116. package/tests/fixtures/completeness/material/valid-incomplete.json +36 -0
  117. package/tests/fixtures/completeness/material/valid-no-fuel.json +36 -0
  118. package/tests/fixtures/completeness/valid.json +22 -0
  119. package/tests/fixtures/cycle/aboveGroundCropResidue/invalid.json +76 -0
  120. package/tests/fixtures/cycle/aboveGroundCropResidue/valid.json +76 -0
  121. package/tests/fixtures/cycle/aggregated-valid.json +102 -0
  122. package/tests/fixtures/cycle/coverCrop/invalid.json +64 -0
  123. package/tests/fixtures/cycle/coverCrop/valid-not-coverCrop.json +54 -0
  124. package/tests/fixtures/cycle/coverCrop/valid.json +64 -0
  125. package/tests/fixtures/cycle/cropResidue/complete/invalid.json +56 -0
  126. package/tests/fixtures/cycle/cropResidue/complete/valid.json +82 -0
  127. package/tests/fixtures/cycle/cropResidue/incomplete/invalid.json +42 -0
  128. package/tests/fixtures/cycle/cropResidue/incomplete/valid.json +56 -0
  129. package/tests/fixtures/cycle/dates/invalid-emissions.json +70 -0
  130. package/tests/fixtures/cycle/liveAnimal-animalProduct-mapping/invalid.json +63 -0
  131. package/tests/fixtures/cycle/liveAnimal-animalProduct-mapping/valid.json +63 -0
  132. package/tests/fixtures/cycle/maximumCycleDuration/invalid-dates-year-only.json +48 -0
  133. package/tests/fixtures/cycle/maximumCycleDuration/invalid-dates.json +48 -0
  134. package/tests/fixtures/cycle/maximumCycleDuration/invalid.json +48 -0
  135. package/tests/fixtures/cycle/maximumCycleDuration/valid-dates-year-only.json +48 -0
  136. package/tests/fixtures/cycle/maximumCycleDuration/valid-dates.json +48 -0
  137. package/tests/fixtures/cycle/maximumCycleDuration/valid.json +48 -0
  138. package/tests/fixtures/cycle/otherSites/cycleDuration/invalid.json +52 -0
  139. package/tests/fixtures/cycle/otherSites/cycleDuration/valid-no-siteDuration.json +40 -0
  140. package/tests/fixtures/cycle/otherSites/cycleDuration/valid.json +52 -0
  141. package/tests/fixtures/cycle/practices/stockingDensityPermanentPastureAverage/invalid.json +56 -0
  142. package/tests/fixtures/cycle/practices/stockingDensityPermanentPastureAverage/valid.json +65 -0
  143. package/tests/fixtures/cycle/primary-product-as-input/invalid.json +59 -0
  144. package/tests/fixtures/cycle/primary-product-as-input/valid.json +48 -0
  145. package/tests/fixtures/cycle/product-linked-ia/cycle.json +66 -0
  146. package/tests/fixtures/cycle/product-linked-ia/invalid-multiple.json +58 -0
  147. package/tests/fixtures/cycle/product-linked-ia/valid.json +57 -0
  148. package/tests/fixtures/cycle/products/animals/invalid.json +69 -0
  149. package/tests/fixtures/cycle/products/animals/valid.json +58 -0
  150. package/tests/fixtures/cycle/riceGrainInHuskFlooded-minimumCycleDuration/invalid.json +53 -0
  151. package/tests/fixtures/cycle/riceGrainInHuskFlooded-minimumCycleDuration/valid.json +53 -0
  152. package/tests/fixtures/cycle/siteDuration/crop/invalid.json +53 -0
  153. package/tests/fixtures/cycle/siteDuration/crop/valid-different-duration.json +53 -0
  154. package/tests/fixtures/cycle/siteDuration/crop/valid-same-duration.json +53 -0
  155. package/tests/fixtures/cycle/siteDuration/invalid.json +41 -0
  156. package/tests/fixtures/cycle/siteDuration/valid-no-siteDuration.json +40 -0
  157. package/tests/fixtures/cycle/siteDuration/valid-otherSites.json +48 -0
  158. package/tests/fixtures/cycle/siteDuration/valid.json +45 -0
  159. package/tests/fixtures/cycle/substrate/required/invalid.json +50 -0
  160. package/tests/fixtures/cycle/substrate/required/valid.json +60 -0
  161. package/tests/fixtures/cycle/valid.json +343 -0
  162. package/tests/fixtures/emission/linked-terms/inputs/invalid.json +78 -0
  163. package/tests/fixtures/emission/linked-terms/inputs/valid.json +106 -0
  164. package/tests/fixtures/emission/linked-terms/transformation/error.json +104 -0
  165. package/tests/fixtures/emission/linked-terms/transformation/valid.json +107 -0
  166. package/tests/fixtures/emission/linked-terms/transformation/warning.json +76 -0
  167. package/tests/fixtures/emission/methodTier-background/invalid.json +60 -0
  168. package/tests/fixtures/emission/methodTier-background/valid.json +60 -0
  169. package/tests/fixtures/emission/not-relevant/invalid.json +71 -0
  170. package/tests/fixtures/emission/not-relevant/valid.json +95 -0
  171. package/tests/fixtures/emission/not-relevant-methodTier/invalid.json +70 -0
  172. package/tests/fixtures/emission/not-relevant-methodTier/valid.json +95 -0
  173. package/tests/fixtures/impactAssessment/aggregated-valid.json +43 -0
  174. package/tests/fixtures/impactAssessment/cycle-contains-product/invalid.json +34 -0
  175. package/tests/fixtures/impactAssessment/cycle-contains-product/valid.json +34 -0
  176. package/tests/fixtures/impactAssessment/cycle-endDate/invalid.json +26 -0
  177. package/tests/fixtures/impactAssessment/cycle-endDate/valid.json +26 -0
  178. package/tests/fixtures/impactAssessment/valid.json +93 -0
  179. package/tests/fixtures/indicator/characterisedIndicator-methodModel/invalid.json +52 -0
  180. package/tests/fixtures/indicator/characterisedIndicator-methodModel/valid.json +52 -0
  181. package/tests/fixtures/indicator/ionisingCompounds/invalid.json +23 -0
  182. package/tests/fixtures/indicator/ionisingCompounds/valid.json +23 -0
  183. package/tests/fixtures/indicator/landTransformation/invalid-grouped.json +257 -0
  184. package/tests/fixtures/indicator/landTransformation/invalid.json +100 -0
  185. package/tests/fixtures/indicator/landTransformation/valid-grouped-full.json +507 -0
  186. package/tests/fixtures/indicator/landTransformation/valid-grouped.json +507 -0
  187. package/tests/fixtures/indicator/landTransformation/valid.json +100 -0
  188. package/tests/fixtures/infrastructure/lifespan/invalid.json +26 -0
  189. package/tests/fixtures/infrastructure/lifespan/valid.json +45 -0
  190. package/tests/fixtures/input/animalFeed-fate/invalid.json +103 -0
  191. package/tests/fixtures/input/animalFeed-fate/valid.json +90 -0
  192. package/tests/fixtures/input/country/invalid.json +64 -0
  193. package/tests/fixtures/input/country/valid.json +64 -0
  194. package/tests/fixtures/input/distribution/animalHousing.json +103 -0
  195. package/tests/fixtures/input/distribution/complete/invalid.json +177 -0
  196. package/tests/fixtures/input/distribution/complete/valid.json +163 -0
  197. package/tests/fixtures/input/distribution/incomplete/valid.json +139 -0
  198. package/tests/fixtures/input/impactAssessment/invalid.json +99 -0
  199. package/tests/fixtures/input/impactAssessment/valid.json +89 -0
  200. package/tests/fixtures/input/input-as-product/invalid.json +57 -0
  201. package/tests/fixtures/input/input-as-product/valid.json +59 -0
  202. package/tests/fixtures/input/mustIncludeId/invalid.json +13 -0
  203. package/tests/fixtures/input/mustIncludeId/valid-multiple-ids.json +31 -0
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  205. package/tests/fixtures/input/saplings/invalid.json +58 -0
  206. package/tests/fixtures/input/saplings/valid-no-saplings.json +58 -0
  207. package/tests/fixtures/input/saplings/valid-not-plantation.json +58 -0
  208. package/tests/fixtures/input/saplings/valid.json +58 -0
  209. package/tests/fixtures/integration/distribution/product-yield-invalid.json +54 -0
  210. package/tests/fixtures/management/cycle-overlap/cycles.json +39 -0
  211. package/tests/fixtures/management/cycle-overlap/invalid.json +26 -0
  212. package/tests/fixtures/management/cycle-overlap/valid.json +26 -0
  213. package/tests/fixtures/management/exists/invalid.json +13 -0
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  215. package/tests/fixtures/management/fallow-dates/invalid.json +24 -0
  216. package/tests/fixtures/management/fallow-dates/valid.json +24 -0
  217. package/tests/fixtures/management/termType/invalid-cropland.json +35 -0
  218. package/tests/fixtures/management/termType/invalid-permanent-pasture.json +25 -0
  219. package/tests/fixtures/management/termType/valid-cropland.json +55 -0
  220. package/tests/fixtures/management/termType/valid-no-management.json +13 -0
  221. package/tests/fixtures/management/termType/valid-permanent-pasture.json +35 -0
  222. package/tests/fixtures/measurement/depths/invalid.json +44 -0
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  224. package/tests/fixtures/measurement/models/valid.json +33 -0
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  229. package/tests/fixtures/measurement/required-depths/error.json +71 -0
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  236. package/tests/fixtures/measurement/startDate-endDate-required/invalid.json +32 -0
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  238. package/tests/fixtures/measurement/unique/invalid.json +28 -0
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  240. package/tests/fixtures/measurement/value-length/invalid.json +46 -0
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  242. package/tests/fixtures/measurement/water-salinity/invalid.json +33 -0
  243. package/tests/fixtures/measurement/water-salinity/valid-brakish.json +40 -0
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  245. package/tests/fixtures/organisation/valid.json +26 -0
  246. package/tests/fixtures/practice/croppingDuration/riceGrainInHuskFlooded/invalid.json +63 -0
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100
+ "@id": "siltContent",
101
+ "units": "%"
102
+ },
103
+ "methodClassification": "unsourced assumption"
104
+ },
105
+ {
106
+ "type": "Measurement",
107
+ "term": {
108
+ "@type": "Term",
109
+ "name": "Clay content",
110
+ "termType": "measurement",
111
+ "@id": "clayContent",
112
+ "units": "%"
113
+ },
114
+ "methodClassification": "unsourced assumption"
115
+ },
116
+ {
117
+ "type": "Measurement",
118
+ "term": {
119
+ "@type": "Term",
120
+ "name": "Total nitrogen (per kg soil)",
121
+ "termType": "measurement",
122
+ "@id": "totalNitrogenPerKgSoil",
123
+ "units": "g N / kg soil"
124
+ },
125
+ "methodClassification": "unsourced assumption"
126
+ },
127
+ {
128
+ "type": "Measurement",
129
+ "term": {
130
+ "@type": "Term",
131
+ "name": "Calcium (per kg soil)",
132
+ "termType": "measurement",
133
+ "@id": "calciumPerKgSoil",
134
+ "units": "g Ca / kg soil"
135
+ },
136
+ "methodClassification": "unsourced assumption"
137
+ },
138
+ {
139
+ "type": "Measurement",
140
+ "term": {
141
+ "@type": "Term",
142
+ "name": "Zinc (per kg soil)",
143
+ "termType": "measurement",
144
+ "@id": "zincPerKgSoil",
145
+ "units": "g Zn / kg soil"
146
+ },
147
+ "methodClassification": "unsourced assumption"
148
+ },
149
+ {
150
+ "type": "Measurement",
151
+ "term": {
152
+ "@type": "Term",
153
+ "name": "Iron (per kg soil)",
154
+ "termType": "measurement",
155
+ "@id": "ironPerKgSoil",
156
+ "units": "g Fe / kg soil"
157
+ },
158
+ "methodClassification": "unsourced assumption"
159
+ },
160
+ {
161
+ "type": "Measurement",
162
+ "term": {
163
+ "@type": "Term",
164
+ "name": "Cation exchange capacity (per kg soil)",
165
+ "termType": "measurement",
166
+ "@id": "cationExchangeCapacityPerKgSoil",
167
+ "units": "cmolc / kg"
168
+ },
169
+ "methodClassification": "unsourced assumption"
170
+ },
171
+ {
172
+ "type": "Measurement",
173
+ "term": {
174
+ "@type": "Term",
175
+ "name": "Sodium (per kg soil)",
176
+ "termType": "measurement",
177
+ "@id": "sodiumPerKgSoil",
178
+ "units": "g Na / kg soil"
179
+ },
180
+ "methodClassification": "unsourced assumption"
181
+ },
182
+ {
183
+ "type": "Measurement",
184
+ "term": {
185
+ "@type": "Term",
186
+ "name": "Copper (per kg soil)",
187
+ "termType": "measurement",
188
+ "@id": "copperPerKgSoil",
189
+ "units": "g Cu / kg soil"
190
+ },
191
+ "methodClassification": "unsourced assumption"
192
+ },
193
+ {
194
+ "type": "Measurement",
195
+ "term": {
196
+ "@type": "Term",
197
+ "name": "Magnesium (per kg soil)",
198
+ "termType": "measurement",
199
+ "@id": "magnesiumPerKgSoil",
200
+ "units": "g Mg / kg soil"
201
+ },
202
+ "methodClassification": "unsourced assumption"
203
+ },
204
+ {
205
+ "type": "Measurement",
206
+ "term": {
207
+ "@type": "Term",
208
+ "name": "Boron (per kg soil)",
209
+ "termType": "measurement",
210
+ "@id": "boronPerKgSoil",
211
+ "units": "g B / kg soil"
212
+ },
213
+ "methodClassification": "unsourced assumption"
214
+ },
215
+ {
216
+ "type": "Measurement",
217
+ "term": {
218
+ "@type": "Term",
219
+ "name": "Calcium carbonate (per kg soil)",
220
+ "termType": "measurement",
221
+ "@id": "calciumCarbonatePerKgSoil",
222
+ "units": "g CaCO3 / kg soil"
223
+ },
224
+ "methodClassification": "unsourced assumption"
225
+ }
226
+ ]
227
+ }