@hestia-earth/data-api 0.0.2-1

package/test/docker-compose.yml

@@ -0,0 +1,40 @@
+version: '3'
+
+services:
+  test:
+    env_file: '../.env.test'
+    image: hestia-data-api:test
+    build:
+      context: ../
+      dockerfile: test/Dockerfile
+    environment:
+      - PGHOST=hestia-data-api-test-db
+      - PGUSER=postgres
+      - PGDATABASE=postgres
+      - PGPASSWORD=password
+      - PGPORT=5432
+    volumes:
+      - ../src:/app/src
+      - ../coverage:/app/coverage
+      - ./:/app/test
+    depends_on:
+      db:
+        condition: service_healthy
+
+  db:
+    image: postgres:14
+    container_name: hestia-data-api-test-db
+    ports:
+      - 5432:5432
+    volumes:
+      - postgres:/data/postgres
+    environment:
+      - POSTGRES_PASSWORD=password
+    healthcheck:
+      test: ['CMD', 'pg_isready', '-q', '-d', 'postgres', '-U', 'postgres']
+      interval: 1s
+      timeout: 5s
+      retries: 5
+
+volumes:
+  postgres:

package/test/fixtures/aggregated-nodes/get.ts

@@ -0,0 +1,184 @@
+export const aggregatedCycles = [
+  {
+    jsonld_pivoted: {
+      '@id': '1',
+      '@type': 'Cycle',
+      site: { '@id': '1' },
+      defaultMethodClassification: 'modelled',
+      startDate: '1990',
+      endDate: '1999',
+      aggregatedQualityScore: 3,
+      practices: { baggingFruit: {}, deepRipping: {} },
+      products: { wheatGrain: {}, barley: {} }
+    }
+  },
+  {
+    jsonld_pivoted: {
+      '@id': '2',
+      '@type': 'Cycle',
+      site: { '@id': '1' },
+      defaultMethodClassification: 'physical measurement',
+      startDate: '1990',
+      endDate: '1999',
+      aggregatedQualityScore: 2,
+      practices: { earthingUpByHand: {} },
+      products: { fishFingerlings: {} }
+    }
+  },
+  {
+    jsonld_pivoted: {
+      '@id': '3',
+      '@type': 'Cycle',
+      site: { '@id': '2' },
+      defaultMethodClassification: 'expert opinion',
+      startDate: '2000',
+      endDate: '2009',
+      aggregatedQualityScore: 2,
+      practices: { baggingFruit: {} },
+      products: { apples: {} }
+    }
+  },
+  {
+    jsonld_pivoted: {
+      '@id': '4',
+      '@type': 'Cycle',
+      site: { '@id': '3' },
+      defaultMethodClassification: 'modelled',
+      startDate: '2010',
+      endDate: '2019',
+      aggregatedQualityScore: 2,
+      practices: { baggingFruit: {} },
+      products: { apples: {} }
+    }
+  },
+  {
+    jsonld_pivoted: {
+      '@id': '5',
+      '@type': 'Cycle',
+      site: { '@id': '3' },
+      defaultMethodClassification: 'modelled',
+      startDate: '2020',
+      endDate: '2029',
+      aggregatedQualityScore: 2,
+      practices: { baggingFruit: {} },
+      products: { apples: {}, cheese: {} }
+    }
+  },
+  {
+    jsonld_pivoted: {
+      '@id': '6',
+      '@type': 'Cycle',
+      site: { '@id': '3' },
+      defaultMethodClassification: 'unsourced assumption',
+      startDate: '2020',
+      endDate: '2029',
+      aggregatedQualityScore: 2,
+      practices: { baggingFruit: {} },
+      products: { apples: {}, cheese: {} }
+    }
+  },
+  {
+    jsonld_pivoted: {
+      '@id': '7',
+      '@type': 'Cycle',
+      site: { '@id': '3' },
+      defaultMethodClassification: 'modelled',
+      startDate: '2020',
+      endDate: '2029',
+      aggregatedQualityScore: 1,
+      practices: { baggingFruit: {} },
+      products: { apples: {}, cheese: {} }
+    }
+  },
+  {
+    jsonld_pivoted: {
+      '@id': '8',
+      '@type': 'Cycle',
+      site: { '@id': '3' },
+      defaultMethodClassification: 'modelled',
+      startDate: '2020',
+      endDate: '2029',
+      aggregatedQualityScore: 1,
+      practices: { baggingFruit: {} },
+      products: { apples: {}, cheese: {} }
+    }
+  }
+];
+
+export const aggregatedImpactAssessments = [
+  {
+    jsonld_pivoted: {
+      '@id': '1',
+      '@type': 'ImpactAssessment',
+      cycle: { '@id': '1' },
+      startDate: '2000',
+      endDate: '2009',
+      product: { term: { '@id': 'wheatGrain' } }
+    }
+  },
+  {
+    jsonld_pivoted: {
+      '@id': '2',
+      '@type': 'ImpactAssessment',
+      cycle: { '@id': '1' },
+      startDate: '2000',
+      endDate: '2009',
+      product: { term: { '@id': 'barley' } }
+    }
+  },
+  {
+    jsonld_pivoted: {
+      '@id': '3',
+      '@type': 'ImpactAssessment',
+      cycle: { '@id': '2' },
+      startDate: '2000',
+      endDate: '2009',
+      product: { term: { '@id': 'fishFingerlings' } }
+    }
+  },
+  {
+    jsonld_pivoted: {
+      '@id': '4',
+      '@type': 'ImpactAssessment',
+      cycle: { '@id': '3' },
+      startDate: '2000',
+      endDate: '2009',
+      product: { term: { '@id': 'apples' } }
+    }
+  }
+];
+
+export const aggregatedSites = [
+  {
+    jsonld_pivoted: {
+      '@id': '1',
+      '@type': 'Site',
+      country: {
+        name: 'Germany',
+        '@id': 'GADM-DEU'
+      }
+    }
+  },
+  {
+    jsonld_pivoted: {
+      '@id': '2',
+      '@type': 'Site',
+      country: {
+        name: 'Poland',
+        '@id': 'GADM-POL'
+      }
+    }
+  },
+  {
+    jsonld_pivoted: {
+      '@id': '3',
+      '@type': 'Site',
+      country: {
+        name: 'Brazil',
+        '@id': 'GADM-BRA'
+      }
+    }
+  }
+];
+
+export const settings = [];

package/test/fixtures/update-aggregated-nodes/abyssinianKaleSeedWhole-cycle_pivoted.csv

@@ -0,0 +1,5 @@
+cycle.id,site.country.@id,site.country.name,site.siteType,site.name,site.id,site.dataPrivate,site.aggregated,site.aggregatedVersion,site.defaultSource.@id,site.defaultSource.name,cycle.startDate,cycle.endDate,cycle.functionalUnit,cycle.startDateDefinition,cycle.dataPrivate,cycle.defaultMethodClassification,cycle.defaultMethodClassificationDescription,cycle.site.id,cycle.aggregated,cycle.aggregatedVersion,cycle.completeness.operations,cycle.completeness.electricityFuel,cycle.completeness.material,cycle.completeness.transport,cycle.completeness.fertiliser,cycle.completeness.soilAmendments,cycle.completeness.pesticidesAntibiotics,cycle.completeness.water,cycle.completeness.animalFeed,cycle.completeness.liveAnimals,cycle.completeness.other,cycle.completeness.products,cycle.completeness.cropResidue,cycle.completeness.excreta,cycle.completeness.waste,cycle.numberOfCycles,cycle.name,cycle.defaultSource.@id,cycle.defaultSource.name,cycle.aggregatedQualityScore,cycle.emissions.112TrichlorotrifluoroethaneToAirInputsProduction.value,cycle.emissions.11DichlorotetrafluoroethaneToAirInputsProduction.value,cycle.emissions.bromochlorodifluoromethaneToAirInputsProduction.value,cycle.emissions.ch4ToAirAquacultureSystems.value,cycle.emissions.ch4ToAirEntericFermentation.value,cycle.emissions.ch4ToAirFloodedRice.value,cycle.emissions.ch4ToAirInputsProductionFossil.value,cycle.emissions.ch4ToAirInputsProductionNonFossil.value,cycle.emissions.chlorodifluoromethaneToAirInputsProduction.value,cycle.emissions.co2ToAirFuelCombustion.value,cycle.emissions.co2ToAirInputsProduction.value,cycle.emissions.co2ToAirLimeHydrolysis.value,cycle.emissions.co2ToAirOrganicSoilCultivation.value,cycle.emissions.co2ToAirUreaHydrolysis.value,cycle.emissions.dichlorodifluoromethaneToAirInputsProduction.value,cycle.emissions.n2OToAirAquacultureSystemsDirect.value,cycle.emissions.n2OToAirAquacultureSystemsIndirect.value,cycle.emissions.n2OToAirCropResidueDecompositionDirect.value,cycle.emissions.n2OToAirExcretaDirect.value,cycle.emissions.n2OToAirExcretaIndirect.value,cycle.emissions.n2OToAirFuelCombustionDirect.value,cycle.emissions.n2OToAirInorganicFertiliserDirect.value,cycle.emissions.n2OToAirInorganicFertiliserIndirect.value,cycle.emissions.n2OToAirInputsProduction.value,cycle.emissions.n2OToAirOrganicFertiliserDirect.value,cycle.emissions.n2OToAirOrganicFertiliserIndirect.value,cycle.emissions.n2OToAirOrganicSoilCultivationDirect.value,cycle.emissions.n2ToAirAquacultureSystems.value,cycle.emissions.nErosionInputsProduction.value,cycle.emissions.nToSurfaceWaterAquacultureSystems.value,cycle.emissions.nToSurfaceWaterInputsProduction.value,cycle.emissions.nh3ToAirAquacultureSystems.value,cycle.emissions.nh3ToAirInorganicFertiliser.value,cycle.emissions.nh3ToAirInputsProduction.value,cycle.emissions.nh3ToAirOrganicFertiliser.value,cycle.emissions.nh4ToGroundwaterInputsProduction.value,cycle.emissions.no3ToGroundwaterInputsProduction.value,cycle.emissions.no3ToSurfaceWaterAquacultureSystems.value,cycle.emissions.noxToAirAquacultureSystems.value,cycle.emissions.noxToAirCropResidueDecomposition.value,cycle.emissions.noxToAirExcreta.value,cycle.emissions.noxToAirFuelCombustion.value,cycle.emissions.noxToAirInorganicFertiliser.value,cycle.emissions.noxToAirInputsProduction.value,cycle.emissions.noxToAirOrganicFertiliser.value,cycle.emissions.pErosionInputsProduction.value,cycle.emissions.pToDrainageWaterInputsProduction.value,cycle.emissions.pToGroundwaterInputsProduction.value,cycle.emissions.pToSurfaceWaterAquacultureSystems.value,cycle.emissions.pToSurfaceWaterInputsProduction.value,cycle.emissions.so2ToAirFuelCombustion.value,cycle.emissions.so2ToAirInputsProduction.value,cycle.inputs.CAS-1071-83-6.value,cycle.inputs.ammoniumNitrateKgN.value,cycle.inputs.diesel.value,cycle.inputs.machineryInfrastructureDepreciatedAmountPerCycle.value,cycle.inputs.organicFertiliserUnspecifiedKgMass.value,cycle.inputs.seed.value,cycle.products.aboveGroundCropResidueRemoved.value,cycle.products.abyssinianKaleSeedWhole.value,cycle.products.abyssinianKaleStraw.value,site.measurements.cationExchangeCapacityPerKgSoil.value,site.measurements.clayContent.value,site.measurements.drainageClass.value,site.measurements.ecoClimateZone.value,site.measurements.erodibility.value,site.measurements.eutricCambisols.value,site.measurements.heavyWinterPrecipitation.value,site.measurements.netPrimaryProduction.value,site.measurements.nutrientLossToAquaticEnvironment.value,site.measurements.organicCarbonPerKgSoil.value,site.measurements.potentialEvapotranspirationAnnual.value,site.measurements.potentialEvapotranspirationLongTermAnnualMean.value,site.measurements.precipitationAnnual.value,site.measurements.precipitationLongTermAnnualMean.value,site.measurements.precipitationMonthly.value,site.measurements.sandContent.value,site.measurements.siltContent.value,site.measurements.slope.value,site.measurements.slopeLength.value,site.measurements.soilPh.value,site.measurements.temperatureAnnual.value,site.measurements.temperatureLongTermAnnualMean.value,site.measurements.totalNitrogenPerKgSoil.value,site.measurements.totalPhosphorusPerKgSoil.value
+-,GADM-POL,Poland,cropland,"Abyssinian kale, seed (whole) - Poland - 2010-2019",abyssinianKaleSeedWhole-poland-2010-2019,false,true,0.15.1,pu2wmwp8yfv7,Hestia Team (2023),,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,15.7648,22,1.3333333333333333,3,0.0276563245669308,100,1,2,20,10,670,631.3873015873015,810.9623960529765,726.8927020301658,297.72893772893747,42,36,1,0.03,6.599999999999999,8.520176188151064,7.671970621744815,5.601999998092651,0.25303214682436836
+-,GADM-POL,Poland,cropland,"Abyssinian kale, seed (whole) - Poland - Conventional, Non Irrigated - 2010-2019",abyssinianKaleSeedWhole-poland-conventional-non-irrigated-2010-2019,false,true,0.15.1,pu2wmwp8yfv7,Hestia Team (2023),,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,15.7648,22,1.3333333333333333,3,0.0276563245669308,100,1,2,20,10,670,631.3873015873015,810.9623960529765,726.8927020301658,297.72893772893747,42,36,1,0.03,6.599999999999999,8.520176188151064,7.671970621744815,5.601999998092651,0.25303214682436836
+abyssinianKaleSeedWhole-poland-conventional-non-irrigated-2010-2019,,,,,,,,,,,2010,2019,1 ha,start of year,false,modelled,aggregated data,abyssinianKaleSeedWhole-poland-conventional-non-irrigated-2010-2019,true,0.15.1,false,false,true,false,true,true,true,false,true,true,true,true,false,true,true,3,"Abyssinian kale, seed (whole) - Poland - Conventional, Non Irrigated - 2010-2019",pu2wmwp8yfv7,Hestia Team (2023),2,6.4641508972789e-9,1.3035708604655794e-7,1.7640974449529045e-7,0,0,0,0.0829178677451453,0.0006479143201644225,0.0000010421751748445345,192.84364791666667,69.14349712373681,0,0,0,3.533156994196919e-7,0,0,0,0,0,0.008273418333333333,1.6472888298269115,0.3855073573744045,0.17257596015401547,0.3953493191584588,0.1602529449560934,0,0,0.6515966655828987,0,0,0,1.5,0.058159818146966205,0,0,0,0,0,0,0,1.9849512264583336,1.7215708857150245,0.16686887901712283,0.4131770125716059,0.1567684746702513,0.014072079707984091,0.000008488147167789383,0,0.03339869044680493,0.12166791666666667,0.16800298937653904,3.24,100,9.605361842105262,0.3547826086956522,300,13,2216.6666667283334,1510,2530,,,,,,,,,,,,,,,,,,,,,,,,
+abyssinianKaleSeedWhole-poland-2010-2019,,,,,,,,,,,2010,2019,1 ha,start of year,false,modelled,aggregated data,abyssinianKaleSeedWhole-poland-2010-2019,true,0.15.1,false,false,true,false,true,true,true,false,true,true,true,true,false,true,true,3,"Abyssinian kale, seed (whole) - Poland - 2010-2019",pu2wmwp8yfv7,Hestia Team (2023),2,6.4641508972789e-9,1.3035708604655794e-7,1.7640974449529045e-7,0,0,0,0.0829178677451453,0.0006479143201644225,0.0000010421751748445345,192.84364791666667,69.14349712373681,0,0,0,3.533156994196919e-7,0,0,0,0,0,0.008273418333333333,1.6472888298269115,0.3855073573744045,0.17257596015401547,0.3953493191584588,0.1602529449560934,0,0,0.6515966655828987,0,0,0,1.5,0.058159818146966205,0,0,0,0,0,0,0,1.9849512264583336,1.7215708857150247,0.16686887901712283,0.4131770125716059,0.1567684746702513,0.014072079707984091,0.000008488147167789383,0,0.03339869044680493,0.12166791666666667,0.16800298937653904,3.24,100,9.605361842105262,0.3547826086956522,300,13,2216.6666667283334,1510,2530,,,,,,,,,,,,,,,,,,,,,,,,

package/test/fixtures/update-aggregated-nodes/abyssinianKaleSeedWhole-cycle_pivoted.csv.cycle.json

@@ -0,0 +1,458 @@
+[
+  {
+    "@id": "abyssinianKaleSeedWhole-poland-conventional-non-irrigated-2010-2019",
+    "startDate": 2010,
+    "endDate": 2019,
+    "functionalUnit": "1 ha",
+    "startDateDefinition": "start of year",
+    "dataPrivate": false,
+    "defaultMethodClassification": "modelled",
+    "defaultMethodClassificationDescription": "aggregated data",
+    "site": {
+      "@id": "abyssinianKaleSeedWhole-poland-conventional-non-irrigated-2010-2019"
+    },
+    "aggregated": true,
+    "aggregatedVersion": "0.15.1",
+    "completeness": {
+      "operations": false,
+      "electricityFuel": false,
+      "material": true,
+      "transport": false,
+      "fertiliser": true,
+      "soilAmendments": true,
+      "pesticidesAntibiotics": true,
+      "water": false,
+      "animalFeed": true,
+      "liveAnimals": true,
+      "other": true,
+      "products": true,
+      "cropResidue": false,
+      "excreta": true,
+      "waste": true
+    },
+    "numberOfCycles": 3,
+    "name": "Abyssinian kale, seed (whole) - Poland - Conventional, Non Irrigated - 2010-2019",
+    "defaultSource": {
+      "@id": "pu2wmwp8yfv7",
+      "name": "Hestia Team (2023)"
+    },
+    "aggregatedQualityScore": 2,
+    "emissions": {
+      "112TrichlorotrifluoroethaneToAirInputsProduction": {
+        "value": 6.4641508972789e-9
+      },
+      "11DichlorotetrafluoroethaneToAirInputsProduction": {
+        "value": 1.3035708604655794e-7
+      },
+      "bromochlorodifluoromethaneToAirInputsProduction": {
+        "value": 1.7640974449529045e-7
+      },
+      "ch4ToAirAquacultureSystems": {
+        "value": 0
+      },
+      "ch4ToAirEntericFermentation": {
+        "value": 0
+      },
+      "ch4ToAirFloodedRice": {
+        "value": 0
+      },
+      "ch4ToAirInputsProductionFossil": {
+        "value": 0.0829178677451453
+      },
+      "ch4ToAirInputsProductionNonFossil": {
+        "value": 0.0006479143201644225
+      },
+      "chlorodifluoromethaneToAirInputsProduction": {
+        "value": 0.0000010421751748445345
+      },
+      "co2ToAirFuelCombustion": {
+        "value": 192.84364791666667
+      },
+      "co2ToAirInputsProduction": {
+        "value": 69.14349712373681
+      },
+      "co2ToAirLimeHydrolysis": {
+        "value": 0
+      },
+      "co2ToAirOrganicSoilCultivation": {
+        "value": 0
+      },
+      "co2ToAirUreaHydrolysis": {
+        "value": 0
+      },
+      "dichlorodifluoromethaneToAirInputsProduction": {
+        "value": 3.533156994196919e-7
+      },
+      "n2OToAirAquacultureSystemsDirect": {
+        "value": 0
+      },
+      "n2OToAirAquacultureSystemsIndirect": {
+        "value": 0
+      },
+      "n2OToAirCropResidueDecompositionDirect": {
+        "value": 0
+      },
+      "n2OToAirExcretaDirect": {
+        "value": 0
+      },
+      "n2OToAirExcretaIndirect": {
+        "value": 0
+      },
+      "n2OToAirFuelCombustionDirect": {
+        "value": 0.008273418333333333
+      },
+      "n2OToAirInorganicFertiliserDirect": {
+        "value": 1.6472888298269115
+      },
+      "n2OToAirInorganicFertiliserIndirect": {
+        "value": 0.3855073573744045
+      },
+      "n2OToAirInputsProduction": {
+        "value": 0.17257596015401547
+      },
+      "n2OToAirOrganicFertiliserDirect": {
+        "value": 0.3953493191584588
+      },
+      "n2OToAirOrganicFertiliserIndirect": {
+        "value": 0.1602529449560934
+      },
+      "n2OToAirOrganicSoilCultivationDirect": {
+        "value": 0
+      },
+      "n2ToAirAquacultureSystems": {
+        "value": 0
+      },
+      "nErosionInputsProduction": {
+        "value": 0.6515966655828987
+      },
+      "nToSurfaceWaterAquacultureSystems": {
+        "value": 0
+      },
+      "nToSurfaceWaterInputsProduction": {
+        "value": 0
+      },
+      "nh3ToAirAquacultureSystems": {
+        "value": 0
+      },
+      "nh3ToAirInorganicFertiliser": {
+        "value": 1.5
+      },
+      "nh3ToAirInputsProduction": {
+        "value": 0.058159818146966205
+      },
+      "nh3ToAirOrganicFertiliser": {
+        "value": 0
+      },
+      "nh4ToGroundwaterInputsProduction": {
+        "value": 0
+      },
+      "no3ToGroundwaterInputsProduction": {
+        "value": 0
+      },
+      "no3ToSurfaceWaterAquacultureSystems": {
+        "value": 0
+      },
+      "noxToAirAquacultureSystems": {
+        "value": 0
+      },
+      "noxToAirCropResidueDecomposition": {
+        "value": 0
+      },
+      "noxToAirExcreta": {
+        "value": 0
+      },
+      "noxToAirFuelCombustion": {
+        "value": 1.9849512264583336
+      },
+      "noxToAirInorganicFertiliser": {
+        "value": 1.7215708857150245
+      },
+      "noxToAirInputsProduction": {
+        "value": 0.16686887901712283
+      },
+      "noxToAirOrganicFertiliser": {
+        "value": 0.4131770125716059
+      },
+      "pErosionInputsProduction": {
+        "value": 0.1567684746702513
+      },
+      "pToDrainageWaterInputsProduction": {
+        "value": 0.014072079707984091
+      },
+      "pToGroundwaterInputsProduction": {
+        "value": 0.000008488147167789383
+      },
+      "pToSurfaceWaterAquacultureSystems": {
+        "value": 0
+      },
+      "pToSurfaceWaterInputsProduction": {
+        "value": 0.03339869044680493
+      },
+      "so2ToAirFuelCombustion": {
+        "value": 0.12166791666666667
+      },
+      "so2ToAirInputsProduction": {
+        "value": 0.16800298937653904
+      }
+    },
+    "inputs": {
+      "CAS-1071-83-6": {
+        "value": 3.24
+      },
+      "ammoniumNitrateKgN": {
+        "value": 100
+      },
+      "diesel": {
+        "value": 9.605361842105262
+      },
+      "machineryInfrastructureDepreciatedAmountPerCycle": {
+        "value": 0.3547826086956522
+      },
+      "organicFertiliserUnspecifiedKgMass": {
+        "value": 300
+      },
+      "seed": {
+        "value": 13
+      }
+    },
+    "products": {
+      "aboveGroundCropResidueRemoved": {
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+      }
+    }
+  },
+  {
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+    "endDate": 2019,
+    "functionalUnit": "1 ha",
+    "startDateDefinition": "start of year",
+    "dataPrivate": false,
+    "defaultMethodClassification": "modelled",
+    "defaultMethodClassificationDescription": "aggregated data",
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+    "name": "Abyssinian kale, seed (whole) - Poland - 2010-2019",
+    "defaultSource": {
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+      "name": "Hestia Team (2023)"
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+    }
+  }
+]