@henrychong-ai/mcp-neo4j-knowledge-graph 2.2.5 → 2.3.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (8) hide show
  1. package/README.md +11 -0
  2. package/dist/KnowledgeGraphManager.d.ts +4 -0
  3. package/dist/KnowledgeGraphManager.js +17 -38
  4. package/dist/KnowledgeGraphManager.js.map +1 -1
  5. package/dist/index.js +22 -11
  6. package/dist/index.js.map +1 -1
  7. package/dist/server/setup.js +1 -1
  8. package/package.json +13 -12
package/README.md CHANGED
@@ -585,6 +585,17 @@ NEO4J_SIMILARITY_FUNCTION=cosine
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  OPENAI_API_KEY=your-openai-api-key
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  OPENAI_EMBEDDING_MODEL=text-embedding-3-small
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+ # Embedding Pipeline Topology (v2.3.0+)
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+ WRITE_EMBEDDINGS_LOCALLY=true # Default true. Set to "false" on thin-client hosts (e.g. laptops)
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+ # to skip queueing embedding jobs on entity writes; entities are
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+ # persisted with embedding=NULL and a server-side instance is
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+ # responsible for backfilling. Read paths still use the embedding
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+ # service for query embeddings, so OPENAI_API_KEY is still
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+ # required for semantic_search unless you accept BM25-only fallback.
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+ EMBEDDING_BACKFILL_CRON='0 19 * * *' # Cron schedule for scheduleIncrementalRegeneration. Default
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+ # 19:00 UTC daily (= 03:00 SGT). Server-side instances may
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+ # tighten to '*/1 * * * *' for ~1-minute backfill latency.
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+
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  # Logging Configuration
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  LOG_LEVEL=warn # Log level: debug, info, warn, error, silent (default: warn)
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  DEBUG=true # Enable debug mode (enables additional diagnostic tools)
package/dist/KnowledgeGraphManager.d.ts CHANGED
@@ -46,12 +46,16 @@ interface KnowledgeGraphManagerOptions {
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  storageProvider?: StorageProvider;
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  embeddingJobManager?: EmbeddingJobManager;
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  vectorStoreOptions?: VectorStoreFactoryOptions;
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+ /** When false, skip queueing embedding jobs locally. See README "Embedding Pipeline Topology". */
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+ writeEmbeddingsLocally?: boolean;
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  }
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  export declare class KnowledgeGraphManager {
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  private storageProvider?;
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  private embeddingJobManager?;
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  private vectorStore?;
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+ private writeEmbeddingsLocally;
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  constructor(options?: KnowledgeGraphManagerOptions);
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+ private queueEmbeddings;
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  /**
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  * Initialize the vector store with the given options
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  *
package/dist/KnowledgeGraphManager.js CHANGED
@@ -21,9 +21,11 @@ export class KnowledgeGraphManager {
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  storageProvider;
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  embeddingJobManager;
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  vectorStore;
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+ writeEmbeddingsLocally;
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  constructor(options) {
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  this.storageProvider = options?.storageProvider;
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  this.embeddingJobManager = options?.embeddingJobManager;
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+ this.writeEmbeddingsLocally = options?.writeEmbeddingsLocally ?? true;
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  // If no storage provider is given, log a deprecation warning
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  if (!this.storageProvider) {
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  logger.warn('WARNING: No storage provider specified. Operations will fail without a StorageProvider implementation.');
@@ -35,6 +37,13 @@ export class KnowledgeGraphManager {
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  });
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  }
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  }
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+ async queueEmbeddings(names, priority) {
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+ if (!this.embeddingJobManager || !this.writeEmbeddingsLocally)
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+ return;
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+ for (const name of names) {
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+ await this.embeddingJobManager.scheduleEntityEmbedding(name, priority);
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+ }
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+ }
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  /**
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  * Initialize the vector store with the given options
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  *
@@ -167,11 +176,7 @@ export class KnowledgeGraphManager {
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  }
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  }
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  // Schedule embedding jobs if manager is provided
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- if (this.embeddingJobManager) {
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- for (const entity of createdEntities) {
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- await this.embeddingJobManager.scheduleEntityEmbedding(entity.name, 1);
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- }
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- }
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+ await this.queueEmbeddings(createdEntities.map(e => e.name), 1);
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  return createdEntities;
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  }
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  async createRelations(relations) {
@@ -226,11 +231,7 @@ export class KnowledgeGraphManager {
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  // Use storage provider for deleting observations
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  await this.storageProvider.deleteObservations(deletions);
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  // Schedule re-embedding for affected entities if manager is provided
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- if (this.embeddingJobManager) {
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- for (const deletion of deletions) {
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- await this.embeddingJobManager.scheduleEntityEmbedding(deletion.entityName, 1);
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- }
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- }
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+ await this.queueEmbeddings(deletions.map(d => d.entityName), 1);
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  }
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  async deleteRelations(relations) {
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  if (!relations || relations.length === 0) {
@@ -275,13 +276,7 @@ export class KnowledgeGraphManager {
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  // Use storage provider for adding observations
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  const results = await this.storageProvider.addObservations(simplifiedObservations);
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  // Schedule re-embedding for affected entities if manager is provided
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- if (this.embeddingJobManager) {
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- for (const result of results) {
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- if (result.addedObservations.length > 0) {
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- await this.embeddingJobManager.scheduleEntityEmbedding(result.entityName, 1);
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- }
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- }
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- }
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+ await this.queueEmbeddings(results.filter(r => r.addedObservations.length > 0).map(r => r.entityName), 1);
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  return results;
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  }
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  /**
@@ -507,9 +502,8 @@ export class KnowledgeGraphManager {
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  throw new Error('Storage provider with updateEntity method is required');
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  }
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  const result = await this.storageProvider.updateEntity(entityName, updates);
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- // Schedule embedding generation if observations were updated
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- if (this.embeddingJobManager && updates.observations) {
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- await this.embeddingJobManager.scheduleEntityEmbedding(entityName, 2);
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+ if (updates.observations) {
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+ await this.queueEmbeddings([entityName], 2);
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  }
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  return result;
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  }
@@ -612,12 +606,7 @@ export class KnowledgeGraphManager {
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  throw new TypeError('Storage provider does not support batch entity creation');
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  }
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  const result = await createEntitiesBatch.call(this.storageProvider, entities, config);
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- // Schedule embedding jobs for successfully created entities
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- if (this.embeddingJobManager && result.successful.length > 0) {
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- for (const entity of result.successful) {
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- await this.embeddingJobManager.scheduleEntityEmbedding(entity.name, 1);
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- }
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- }
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+ await this.queueEmbeddings(result.successful.map((e) => e.name), 1);
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  return result;
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  }
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  /**
@@ -707,12 +696,7 @@ export class KnowledgeGraphManager {
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  throw new TypeError('Storage provider does not support batch observation addition');
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  }
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  const result = await addObservationsBatch.call(this.storageProvider, batches, config);
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- // Schedule re-embedding for successfully modified entities
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- if (this.embeddingJobManager && result.successful.length > 0) {
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- for (const batch of result.successful) {
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- await this.embeddingJobManager.scheduleEntityEmbedding(batch.entityName, 1);
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- }
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- }
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+ await this.queueEmbeddings(result.successful.map((b) => b.entityName), 1);
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  return result;
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  }
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  /**
@@ -762,12 +746,7 @@ export class KnowledgeGraphManager {
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  throw new TypeError('Storage provider does not support batch entity updates');
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  }
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  const result = await updateEntitiesBatch.call(this.storageProvider, updates, config);
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- // Schedule re-embedding for successfully updated entities (priority 2 for updates)
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- if (this.embeddingJobManager && result.successful.length > 0) {
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- for (const entity of result.successful) {
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- await this.embeddingJobManager.scheduleEntityEmbedding(entity.name, 2);
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- }
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- }
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+ await this.queueEmbeddings(result.successful.map((e) => e.name), 2);
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  return result;
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  }
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  }
package/dist/KnowledgeGraphManager.js.map CHANGED
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1
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package/dist/index.js CHANGED
@@ -13,6 +13,9 @@ export * from './KnowledgeGraphManager.js';
13
13
  export { Relation } from './types/relation.js';
14
14
  // Initialize storage and create KnowledgeGraphManager
15
15
  const storageProvider = initializeStorageProvider();
16
+ // See README "Embedding Pipeline Topology" for what these env flags do.
17
+ const writeEmbeddingsLocally = process.env.WRITE_EMBEDDINGS_LOCALLY !== 'false';
18
+ const embeddingBackfillCron = process.env.EMBEDDING_BACKFILL_CRON ?? '0 19 * * *';
16
19
  // Initialize Prometheus metrics (will be initialized in production environment only)
17
20
  let prometheusMetrics = null;
18
21
  // Initialize embedding job manager only if storage provider supports it
@@ -123,10 +126,16 @@ catch (error) {
123
126
  const knowledgeGraphManager = new KnowledgeGraphManager({
124
127
  storageProvider,
125
128
  embeddingJobManager,
129
+ writeEmbeddingsLocally,
126
130
  // Pass vector store options from storage provider if available
127
131
  // eslint-disable-next-line @typescript-eslint/no-explicit-any
128
132
  vectorStoreOptions: storageProvider.vectorStoreOptions,
129
133
  });
134
+ if (!writeEmbeddingsLocally) {
135
+ logger.info('WRITE_EMBEDDINGS_LOCALLY=false: entity writes will NOT queue embedding jobs. ' +
136
+ 'A server-side instance with OPENAI_API_KEY must run `scheduleIncrementalRegeneration` ' +
137
+ 'to embed NULL entities.');
138
+ }
130
139
  // Ensure the storeEntityVector method is available on KnowledgeGraphManager's storageProvider
131
140
  // Cast to any to bypass type checking for internal properties
132
141
  // eslint-disable-next-line @typescript-eslint/no-explicit-any
@@ -172,8 +181,7 @@ if (knowledgeGraphManager && typeof knowledgeGraphManager.createEntities === 'fu
172
181
  knowledgeGraphManager.createEntities = async function (entities) {
173
182
  // First call the original method to create the entities
174
183
  const result = await originalCreateEntities(entities);
175
- // Then process jobs immediately if we have an embedding job manager
176
- if (embeddingJobManager) {
184
+ if (embeddingJobManager && writeEmbeddingsLocally) {
177
185
  try {
178
186
  logger.info('Processing embedding jobs immediately after entity creation', {
179
187
  entityCount: entities.length,
@@ -203,8 +211,8 @@ if (!process.env.VITEST && !process.env.NODE_ENV?.includes('test')) {
203
211
  // Initialize Prometheus metrics (production only - prevents interval leaks in tests)
204
212
  prometheusMetrics = PrometheusMetrics.getInstance();
205
213
  prometheusMetrics.startServer(9091);
206
- // Schedule periodic processing for embedding jobs (production only)
207
- if (embeddingJobManager) {
214
+ // When writeEmbeddingsLocally=false, no jobs are ever queued, so skip the worker tick + cron.
215
+ if (embeddingJobManager && writeEmbeddingsLocally) {
208
216
  const EMBEDDING_PROCESS_INTERVAL = 10_000; // 10 seconds - more frequent processing
209
217
  setInterval(async () => {
210
218
  try {
@@ -219,19 +227,22 @@ if (!process.env.VITEST && !process.env.NODE_ENV?.includes('test')) {
219
227
  });
220
228
  }
221
229
  }, EMBEDDING_PROCESS_INTERVAL);
222
- // Schedule daily incremental embedding regeneration
223
- // Runs at 3 AM Singapore time (19:00 UTC = 3 AM UTC+8)
224
- cron.schedule('0 19 * * *', async () => {
225
- logger.info('Starting daily incremental embedding regeneration (3 AM SGT)');
230
+ // Schedule incremental embedding regeneration via configurable cron (default 19:00 UTC daily).
231
+ // Server-side instances should tighten this (e.g. `EMBEDDING_BACKFILL_CRON='*/1 * * * *'`)
232
+ // to backfill NULL entities written by client-side instances within ~1 minute.
233
+ cron.schedule(embeddingBackfillCron, async () => {
234
+ logger.info('Starting incremental embedding regeneration', {
235
+ schedule: embeddingBackfillCron,
236
+ });
226
237
  try {
227
238
  const scheduledCount = await embeddingJobManager?.scheduleIncrementalRegeneration();
228
- logger.info('Daily regeneration completed', {
239
+ logger.info('Incremental regeneration completed', {
229
240
  entitiesScheduled: scheduledCount,
230
241
  time: new Date().toISOString(),
231
242
  });
232
243
  }
233
244
  catch (error) {
234
- logger.error('Daily regeneration failed', {
245
+ logger.error('Incremental regeneration failed', {
235
246
  error: error instanceof Error ? error.message : String(error),
236
247
  stack: error instanceof Error ? error.stack : undefined,
237
248
  time: new Date().toISOString(),
@@ -242,7 +253,7 @@ if (!process.env.VITEST && !process.env.NODE_ENV?.includes('test')) {
242
253
  });
243
254
  logger.info('Embedding automation configured', {
244
255
  periodicProcessing: `Every ${EMBEDDING_PROCESS_INTERVAL}ms`,
245
- dailyRegeneration: '3 AM Singapore time (19:00 UTC)',
256
+ backfillSchedule: embeddingBackfillCron,
246
257
  timezone: 'UTC',
247
258
  });
248
259
  }
package/dist/index.js.map CHANGED
@@ -1 +1 @@
1
- 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package/dist/server/setup.js CHANGED
@@ -13,7 +13,7 @@ export function setupServer(knowledgeGraphManager) {
13
13
  // Create server instance
14
14
  const server = new Server({
15
15
  name: 'mcp-neo4j-knowledge-graph',
16
- version: '2.2.5',
16
+ version: '2.3.0',
17
17
  }, {
18
18
  capabilities: {
19
19
  tools: {},
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@henrychong-ai/mcp-neo4j-knowledge-graph",
3
- "version": "2.2.5",
3
+ "version": "2.3.0",
4
4
  "description": "Neo4j-based knowledge graph MCP server with temporal versioning and semantic search",
5
5
  "license": "MIT",
6
6
  "author": "Henry Chong <henry@henrychong.ai>",
@@ -55,28 +55,28 @@
55
55
  "embeddings:test": "tsx src/cli/generate-embeddings.ts -- --limit 5"
56
56
  },
57
57
  "dependencies": {
58
- "@modelcontextprotocol/sdk": "^1.28.0",
59
- "axios": "^1.14.0",
60
- "dotenv": "^17.3.1",
61
- "lru-cache": "^11.2.7",
58
+ "@modelcontextprotocol/sdk": "^1.29.0",
59
+ "axios": "^1.15.2",
60
+ "dotenv": "^17.4.2",
61
+ "lru-cache": "^11.3.5",
62
62
  "neo4j-driver": "^6.0.1",
63
63
  "node-cron": "^4.2.1",
64
64
  "prom-client": "^15.1.3",
65
65
  "uuid": "^13.0.0",
66
- "zod": "^4.3.6"
66
+ "zod": "^4.4.1"
67
67
  },
68
68
  "devDependencies": {
69
- "@biomejs/biome": "^2.4.9",
70
- "@types/node": "^25.4.0",
69
+ "@biomejs/biome": "^2.4.13",
70
+ "@types/node": "^25.6.0",
71
71
  "@types/node-cron": "^3.0.11",
72
- "@vitest/coverage-v8": "^4.1.2",
72
+ "@vitest/coverage-v8": "^4.1.5",
73
73
  "husky": "^9.1.7",
74
74
  "lint-staged": "^16.4.0",
75
- "oxlint": "^1.57.0",
75
+ "oxlint": "^1.62.0",
76
76
  "shx": "^0.4.0",
77
77
  "tsx": "^4.21.0",
78
78
  "typescript": "^5.9.3",
79
- "vitest": "^4.1.2"
79
+ "vitest": "^4.1.5"
80
80
  },
81
81
  "packageManager": "pnpm@10.30.0",
82
82
  "engines": {
@@ -95,7 +95,8 @@
95
95
  "picomatch": ">=4.0.4",
96
96
  "micromatch>picomatch": "^2.3.2",
97
97
  "path-to-regexp@>=8.0.0 <8.4.0": ">=8.4.0",
98
- "yaml@>=2.0.0 <2.8.3": ">=2.8.3"
98
+ "yaml@>=2.0.0 <2.8.3": ">=2.8.3",
99
+ "follow-redirects": ">=1.16.0"
99
100
  }
100
101
  },
101
102
  "lint-staged": {