@henrychong-ai/mcp-neo4j-knowledge-graph 1.1.7 → 1.4.0

package/README.md

@@ -466,8 +466,77 @@ OPENAI_EMBEDDING_MODEL=text-embedding-3-small
 
 # Debug Settings
 DEBUG=true
+
+# Prometheus Metrics (Optional - Production Monitoring)
+ENABLE_PROMETHEUS_METRICS=true  # Enable metrics collection and HTTP endpoint
+```
+
+### Prometheus Metrics
+
+The MCP server includes built-in Prometheus metrics for production observability. Metrics are **disabled by default** to minimize local machine overhead and only enabled when explicitly configured.
+
+#### Enabling Metrics
+
+Set the environment variable to enable metrics collection:
+
+```bash
+export ENABLE_PROMETHEUS_METRICS=true
+```
+
+When enabled, the metrics server starts on **port 9091** and exposes a `/metrics` endpoint in Prometheus exposition format.
+
+#### Available Metrics
+
+**Query Performance:**
+- `mcp_query_duration_seconds` - Histogram tracking query execution time
+  - Labels: `operation` (loadGraph, searchNodes, openNodes, semanticSearch), `cache_status` (hit, miss, disabled)
+  - Buckets: 1ms, 5ms, 10ms, 50ms, 100ms, 500ms, 1s, 5s
+
+**Cache Performance (ready for future cache integration):**
+- `mcp_cache_hits_total` - Counter for cache hits
+- `mcp_cache_misses_total` - Counter for cache misses
+- `mcp_cache_invalidations_total` - Counter for cache invalidations
+- `mcp_cache_size_current` - Gauge for current cache size
+
+**Process Metrics:**
+- Default Node.js process metrics (CPU, memory, event loop, garbage collection)
+
+#### Accessing Metrics
+
+Once enabled, metrics are available at:
+
+```bash
+curl http://localhost:9091/metrics
 ```
 
+#### Production Deployment
+
+For production deployments (e.g., vps-2), configure Prometheus to scrape the metrics endpoint:
+
+```yaml
+scrape_configs:
+  - job_name: "mcp-kg-server"
+    scrape_interval: 30s
+    static_configs:
+      - targets: ["localhost:9091"]
+        labels:
+          instance: "mcp-neo4j-knowledge-graph"
+          environment: "production"
+```
+
+Metrics can then be visualized in Grafana with custom dashboards showing:
+- Query performance trends
+- Cache hit/miss ratios
+- System resource utilization
+- Operation latency distributions
+
+#### Port Selection
+
+Port 9091 is chosen to avoid conflicts with common Prometheus exporters:
+- 9090: Prometheus server
+- 9099: neo4j-exporter
+- 9100: node-exporter
+
 ### Command Line Options
 
 The Neo4j CLI tools support the following options:

package/dist/embeddings/EmbeddingJobManager.d.ts

@@ -208,5 +208,20 @@ export declare class EmbeddingJobManager {
      * @returns Cached embedding or undefined
      */
     getCacheEntry(key: string): CachedEmbedding | undefined;
+    /**
+     * Schedule incremental regeneration for entities without embeddings
+     * This method queries all entities and schedules embedding jobs only for those missing embeddings
+     *
+     * @returns Number of entities scheduled for embedding generation
+     */
+    scheduleIncrementalRegeneration(): Promise<number>;
+    /**
+     * Get all entities from storage provider
+     * This is a helper method to retrieve all entities for incremental regeneration
+     *
+     * @private
+     * @returns Array of all entities
+     */
+    private _getAllEntitiesFromStorage;
 }
 export {};

package/dist/embeddings/EmbeddingJobManager.js

@@ -541,5 +541,77 @@ export class EmbeddingJobManager {
     getCacheEntry(key) {
         return this.cache.get(key);
     }
+    /**
+     * Schedule incremental regeneration for entities without embeddings
+     * This method queries all entities and schedules embedding jobs only for those missing embeddings
+     *
+     * @returns Number of entities scheduled for embedding generation
+     */
+    async scheduleIncrementalRegeneration() {
+        this.logger.info('Starting incremental embedding regeneration check');
+        try {
+            // Get all entities from storage
+            const allEntities = await this._getAllEntitiesFromStorage();
+            this.logger.debug('Retrieved entities for embedding check', {
+                totalCount: allEntities.length
+            });
+            // Filter for entities without embeddings
+            const entitiesWithoutEmbeddings = allEntities.filter(entity => !entity.embedding);
+            this.logger.info('Found entities without embeddings', {
+                count: entitiesWithoutEmbeddings.length,
+                totalEntities: allEntities.length,
+                coverage: `${Math.round((allEntities.length - entitiesWithoutEmbeddings.length) / allEntities.length * 100)}%`
+            });
+            // Schedule embedding jobs for entities without embeddings
+            let scheduledCount = 0;
+            for (const entity of entitiesWithoutEmbeddings) {
+                try {
+                    await this.scheduleEntityEmbedding(entity.name, 1);
+                    scheduledCount++;
+                }
+                catch (error) {
+                    this.logger.warn('Failed to schedule embedding for entity', {
+                        entityName: entity.name,
+                        error: error instanceof Error ? error.message : String(error)
+                    });
+                }
+            }
+            this.logger.info('Incremental regeneration scheduling complete', {
+                scheduled: scheduledCount,
+                missing: entitiesWithoutEmbeddings.length
+            });
+            return scheduledCount;
+        }
+        catch (error) {
+            this.logger.error('Failed during incremental regeneration', {
+                error: error instanceof Error ? error.message : String(error),
+                stack: error instanceof Error ? error.stack : undefined
+            });
+            throw error;
+        }
+    }
+    /**
+     * Get all entities from storage provider
+     * This is a helper method to retrieve all entities for incremental regeneration
+     *
+     * @private
+     * @returns Array of all entities
+     */
+    async _getAllEntitiesFromStorage() {
+        // Use the storage provider's loadGraph method to get all entities
+        // eslint-disable-next-line @typescript-eslint/no-explicit-any
+        const storageProviderAny = this.storageProvider;
+        if (typeof storageProviderAny.loadGraph === 'function') {
+            const graph = await storageProviderAny.loadGraph();
+            return graph.entities || [];
+        }
+        else if (typeof storageProviderAny.getAllEntities === 'function') {
+            return await storageProviderAny.getAllEntities();
+        }
+        else {
+            this.logger.error('Storage provider does not support entity retrieval');
+            throw new Error('Storage provider does not support getAllEntities or loadGraph');
+        }
+    }
 }
 //# sourceMappingURL=EmbeddingJobManager.js.map

package/dist/embeddings/EmbeddingJobManager.js.map

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package/dist/index.js

@@ -5,13 +5,18 @@ import { initializeStorageProvider } from './config/storage.js';
 import { setupServer } from './server/setup.js';
 import { EmbeddingJobManager } from './embeddings/EmbeddingJobManager.js';
 import { EmbeddingServiceFactory } from './embeddings/EmbeddingServiceFactory.js';
+import { PrometheusMetrics } from './metrics/PrometheusMetrics.js';
 import { logger } from './utils/logger.js';
+import cron from 'node-cron';
 // Re-export the types and classes for use in other modules
 export * from './KnowledgeGraphManager.js';
 // Export the Relation type
 export { Relation } from './types/relation.js';
 // Initialize storage and create KnowledgeGraphManager
 const storageProvider = initializeStorageProvider();
+// Initialize Prometheus metrics (environment-gated)
+const prometheusMetrics = PrometheusMetrics.getInstance();
+prometheusMetrics.startServer(9091);
 // Initialize embedding job manager only if storage provider supports it
 let embeddingJobManager = undefined;
 try {
@@ -106,21 +111,7 @@ try {
     // eslint-disable-next-line @typescript-eslint/no-explicit-any
     adaptedStorageProvider, embeddingService, rateLimiterOptions, null, // Use default cache options
     logger);
-    // Schedule periodic processing for embedding jobs
-    const EMBEDDING_PROCESS_INTERVAL = 10000; // 10 seconds - more frequent processing
-    setInterval(async () => {
-        try {
-            // Process pending embedding jobs
-            await embeddingJobManager?.processJobs(10);
-        }
-        catch (error) {
-            // Log error but don't crash
-            logger.error('Error in scheduled job processing', {
-                error: error instanceof Error ? error.message : String(error),
-                stack: error instanceof Error ? error.stack : undefined,
-            });
-        }
-    }, EMBEDDING_PROCESS_INTERVAL);
+    logger.info('EmbeddingJobManager initialized (background jobs will start only in production)');
 }
 catch (error) {
     // Fail gracefully if embedding job manager initialization fails
@@ -209,8 +200,52 @@ export async function main() {
     const transport = new StdioServerTransport();
     await server.connect(transport);
 }
-// Only run main if not in a test environment
+// Only run main and background jobs if not in a test environment
 if (!process.env.VITEST && !process.env.NODE_ENV?.includes('test')) {
+    // Schedule periodic processing for embedding jobs (production only)
+    if (embeddingJobManager) {
+        const EMBEDDING_PROCESS_INTERVAL = 10000; // 10 seconds - more frequent processing
+        setInterval(async () => {
+            try {
+                // Process pending embedding jobs
+                await embeddingJobManager?.processJobs(10);
+            }
+            catch (error) {
+                // Log error but don't crash
+                logger.error('Error in scheduled job processing', {
+                    error: error instanceof Error ? error.message : String(error),
+                    stack: error instanceof Error ? error.stack : undefined,
+                });
+            }
+        }, EMBEDDING_PROCESS_INTERVAL);
+        // Schedule daily incremental embedding regeneration
+        // Runs at 3 AM Singapore time (19:00 UTC = 3 AM UTC+8)
+        cron.schedule('0 19 * * *', async () => {
+            logger.info('Starting daily incremental embedding regeneration (3 AM SGT)');
+            try {
+                const scheduledCount = await embeddingJobManager?.scheduleIncrementalRegeneration();
+                logger.info('Daily regeneration completed', {
+                    entitiesScheduled: scheduledCount,
+                    time: new Date().toISOString(),
+                });
+            }
+            catch (error) {
+                logger.error('Daily regeneration failed', {
+                    error: error instanceof Error ? error.message : String(error),
+                    stack: error instanceof Error ? error.stack : undefined,
+                    time: new Date().toISOString(),
+                });
+            }
+        }, {
+            timezone: 'UTC',
+        });
+        logger.info('Embedding automation configured', {
+            periodicProcessing: `Every ${EMBEDDING_PROCESS_INTERVAL}ms`,
+            dailyRegeneration: '3 AM Singapore time (19:00 UTC)',
+            timezone: 'UTC',
+        });
+    }
+    // Start MCP server
     main().catch((error) => {
         // Log error but don't use console.error
         logger.error(`Main process terminated: ${error}`);

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package/dist/metrics/PrometheusMetrics.d.ts

@@ -0,0 +1,71 @@
+import promClient from 'prom-client';
+/**
+ * PrometheusMetrics - Manages Prometheus metrics collection for the MCP Knowledge Graph server
+ *
+ * Provides metrics for:
+ * - Query result cache performance (hits, misses, invalidations)
+ * - Cache size monitoring
+ * - Query execution duration with cache status tracking
+ *
+ * Metrics are exposed on /metrics endpoint on port 9091 when enabled via environment variable.
+ */
+export declare class PrometheusMetrics {
+    private static instance;
+    private register;
+    private server;
+    readonly cacheHits: promClient.Counter;
+    readonly cacheMisses: promClient.Counter;
+    readonly cacheInvalidations: promClient.Counter;
+    readonly cacheSize: promClient.Gauge;
+    readonly queryDuration: promClient.Histogram;
+    private constructor();
+    /**
+     * Get singleton instance of PrometheusMetrics
+     */
+    static getInstance(): PrometheusMetrics;
+    /**
+     * Start the metrics HTTP server on specified port
+     * Only starts if ENABLE_PROMETHEUS_METRICS=true in environment
+     */
+    startServer(port?: number): void;
+    /**
+     * Stop the metrics HTTP server
+     */
+    stopServer(): void;
+    /**
+     * Record a cache hit
+     */
+    recordCacheHit(): void;
+    /**
+     * Record a cache miss
+     */
+    recordCacheMiss(): void;
+    /**
+     * Record a cache invalidation
+     */
+    recordCacheInvalidation(): void;
+    /**
+     * Update current cache size
+     */
+    updateCacheSize(size: number): void;
+    /**
+     * Record query execution duration
+     * @param durationSeconds - Duration in seconds
+     * @param cacheStatus - 'hit' | 'miss' | 'disabled'
+     * @param operation - Operation name (e.g., 'readGraph', 'searchNodes')
+     */
+    recordQueryDuration(durationSeconds: number, cacheStatus: 'hit' | 'miss' | 'disabled', operation: string): void;
+    /**
+     * Create a timer for measuring query duration
+     * Returns a function that stops the timer and records the metric
+     */
+    startQueryTimer(operation: string): (cacheStatus: 'hit' | 'miss' | 'disabled') => void;
+    /**
+     * Get metrics in Prometheus exposition format
+     */
+    getMetrics(): Promise<string>;
+    /**
+     * Reset all metrics (useful for testing)
+     */
+    reset(): void;
+}

package/dist/metrics/PrometheusMetrics.js

@@ -0,0 +1,159 @@
+import promClient from 'prom-client';
+import http from 'http';
+/**
+ * PrometheusMetrics - Manages Prometheus metrics collection for the MCP Knowledge Graph server
+ *
+ * Provides metrics for:
+ * - Query result cache performance (hits, misses, invalidations)
+ * - Cache size monitoring
+ * - Query execution duration with cache status tracking
+ *
+ * Metrics are exposed on /metrics endpoint on port 9091 when enabled via environment variable.
+ */
+export class PrometheusMetrics {
+    constructor() {
+        this.server = null;
+        this.register = new promClient.Registry();
+        // Add default metrics (process CPU, memory, etc.)
+        promClient.collectDefaultMetrics({ register: this.register });
+        // Initialize cache hit counter
+        this.cacheHits = new promClient.Counter({
+            name: 'mcp_cache_hits_total',
+            help: 'Total number of cache hits',
+            registers: [this.register],
+        });
+        // Initialize cache miss counter
+        this.cacheMisses = new promClient.Counter({
+            name: 'mcp_cache_misses_total',
+            help: 'Total number of cache misses',
+            registers: [this.register],
+        });
+        // Initialize cache invalidation counter
+        this.cacheInvalidations = new promClient.Counter({
+            name: 'mcp_cache_invalidations_total',
+            help: 'Total number of cache invalidations',
+            registers: [this.register],
+        });
+        // Initialize cache size gauge
+        this.cacheSize = new promClient.Gauge({
+            name: 'mcp_cache_size_current',
+            help: 'Current number of items in the cache',
+            registers: [this.register],
+        });
+        // Initialize query duration histogram
+        this.queryDuration = new promClient.Histogram({
+            name: 'mcp_query_duration_seconds',
+            help: 'Query execution duration in seconds',
+            labelNames: ['cache_status', 'operation'],
+            buckets: [0.001, 0.005, 0.01, 0.05, 0.1, 0.5, 1, 5], // 1ms to 5s
+            registers: [this.register],
+        });
+    }
+    /**
+     * Get singleton instance of PrometheusMetrics
+     */
+    static getInstance() {
+        if (!PrometheusMetrics.instance) {
+            PrometheusMetrics.instance = new PrometheusMetrics();
+        }
+        return PrometheusMetrics.instance;
+    }
+    /**
+     * Start the metrics HTTP server on specified port
+     * Only starts if ENABLE_PROMETHEUS_METRICS=true in environment
+     */
+    startServer(port = 9091) {
+        const enabled = process.env.ENABLE_PROMETHEUS_METRICS === 'true';
+        if (!enabled) {
+            console.log('[PrometheusMetrics] Metrics collection disabled (ENABLE_PROMETHEUS_METRICS != true)');
+            return;
+        }
+        if (this.server) {
+            console.log(`[PrometheusMetrics] Server already running on port ${port}`);
+            return;
+        }
+        this.server = http.createServer(async (req, res) => {
+            if (req.url === '/metrics') {
+                res.setHeader('Content-Type', this.register.contentType);
+                const metrics = await this.register.metrics();
+                res.end(metrics);
+            }
+            else {
+                res.statusCode = 404;
+                res.end('Not Found');
+            }
+        });
+        this.server.listen(port, () => {
+            console.log(`[PrometheusMetrics] Metrics server listening on http://localhost:${port}/metrics`);
+        });
+    }
+    /**
+     * Stop the metrics HTTP server
+     */
+    stopServer() {
+        if (this.server) {
+            this.server.close(() => {
+                console.log('[PrometheusMetrics] Metrics server stopped');
+            });
+            this.server = null;
+        }
+    }
+    /**
+     * Record a cache hit
+     */
+    recordCacheHit() {
+        this.cacheHits.inc();
+    }
+    /**
+     * Record a cache miss
+     */
+    recordCacheMiss() {
+        this.cacheMisses.inc();
+    }
+    /**
+     * Record a cache invalidation
+     */
+    recordCacheInvalidation() {
+        this.cacheInvalidations.inc();
+    }
+    /**
+     * Update current cache size
+     */
+    updateCacheSize(size) {
+        this.cacheSize.set(size);
+    }
+    /**
+     * Record query execution duration
+     * @param durationSeconds - Duration in seconds
+     * @param cacheStatus - 'hit' | 'miss' | 'disabled'
+     * @param operation - Operation name (e.g., 'readGraph', 'searchNodes')
+     */
+    recordQueryDuration(durationSeconds, cacheStatus, operation) {
+        this.queryDuration.observe({ cache_status: cacheStatus, operation }, durationSeconds);
+    }
+    /**
+     * Create a timer for measuring query duration
+     * Returns a function that stops the timer and records the metric
+     */
+    startQueryTimer(operation) {
+        const start = Date.now();
+        return (cacheStatus) => {
+            const durationSeconds = (Date.now() - start) / 1000;
+            this.recordQueryDuration(durationSeconds, cacheStatus, operation);
+        };
+    }
+    /**
+     * Get metrics in Prometheus exposition format
+     */
+    async getMetrics() {
+        return await this.register.metrics();
+    }
+    /**
+     * Reset all metrics (useful for testing)
+     */
+    reset() {
+        this.register.resetMetrics();
+    }
+}
+PrometheusMetrics.instance = null;
+//# sourceMappingURL=PrometheusMetrics.js.map

package/dist/metrics/PrometheusMetrics.js.map

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