@henrychong-ai/mcp-neo4j-knowledge-graph 1.1.7 → 1.3.1

package/dist/embeddings/EmbeddingJobManager.d.ts

@@ -208,5 +208,20 @@ export declare class EmbeddingJobManager {
      * @returns Cached embedding or undefined
      */
     getCacheEntry(key: string): CachedEmbedding | undefined;
+    /**
+     * Schedule incremental regeneration for entities without embeddings
+     * This method queries all entities and schedules embedding jobs only for those missing embeddings
+     *
+     * @returns Number of entities scheduled for embedding generation
+     */
+    scheduleIncrementalRegeneration(): Promise<number>;
+    /**
+     * Get all entities from storage provider
+     * This is a helper method to retrieve all entities for incremental regeneration
+     *
+     * @private
+     * @returns Array of all entities
+     */
+    private _getAllEntitiesFromStorage;
 }
 export {};

package/dist/embeddings/EmbeddingJobManager.js

@@ -541,5 +541,77 @@ export class EmbeddingJobManager {
     getCacheEntry(key) {
         return this.cache.get(key);
     }
+    /**
+     * Schedule incremental regeneration for entities without embeddings
+     * This method queries all entities and schedules embedding jobs only for those missing embeddings
+     *
+     * @returns Number of entities scheduled for embedding generation
+     */
+    async scheduleIncrementalRegeneration() {
+        this.logger.info('Starting incremental embedding regeneration check');
+        try {
+            // Get all entities from storage
+            const allEntities = await this._getAllEntitiesFromStorage();
+            this.logger.debug('Retrieved entities for embedding check', {
+                totalCount: allEntities.length
+            });
+            // Filter for entities without embeddings
+            const entitiesWithoutEmbeddings = allEntities.filter(entity => !entity.embedding);
+            this.logger.info('Found entities without embeddings', {
+                count: entitiesWithoutEmbeddings.length,
+                totalEntities: allEntities.length,
+                coverage: `${Math.round((allEntities.length - entitiesWithoutEmbeddings.length) / allEntities.length * 100)}%`
+            });
+            // Schedule embedding jobs for entities without embeddings
+            let scheduledCount = 0;
+            for (const entity of entitiesWithoutEmbeddings) {
+                try {
+                    await this.scheduleEntityEmbedding(entity.name, 1);
+                    scheduledCount++;
+                }
+                catch (error) {
+                    this.logger.warn('Failed to schedule embedding for entity', {
+                        entityName: entity.name,
+                        error: error instanceof Error ? error.message : String(error)
+                    });
+                }
+            }
+            this.logger.info('Incremental regeneration scheduling complete', {
+                scheduled: scheduledCount,
+                missing: entitiesWithoutEmbeddings.length
+            });
+            return scheduledCount;
+        }
+        catch (error) {
+            this.logger.error('Failed during incremental regeneration', {
+                error: error instanceof Error ? error.message : String(error),
+                stack: error instanceof Error ? error.stack : undefined
+            });
+            throw error;
+        }
+    }
+    /**
+     * Get all entities from storage provider
+     * This is a helper method to retrieve all entities for incremental regeneration
+     *
+     * @private
+     * @returns Array of all entities
+     */
+    async _getAllEntitiesFromStorage() {
+        // Use the storage provider's loadGraph method to get all entities
+        // eslint-disable-next-line @typescript-eslint/no-explicit-any
+        const storageProviderAny = this.storageProvider;
+        if (typeof storageProviderAny.loadGraph === 'function') {
+            const graph = await storageProviderAny.loadGraph();
+            return graph.entities || [];
+        }
+        else if (typeof storageProviderAny.getAllEntities === 'function') {
+            return await storageProviderAny.getAllEntities();
+        }
+        else {
+            this.logger.error('Storage provider does not support entity retrieval');
+            throw new Error('Storage provider does not support getAllEntities or loadGraph');
+        }
+    }
 }
 //# sourceMappingURL=EmbeddingJobManager.js.map

package/dist/embeddings/EmbeddingJobManager.js.map

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package/dist/index.js

@@ -6,6 +6,7 @@ import { setupServer } from './server/setup.js';
 import { EmbeddingJobManager } from './embeddings/EmbeddingJobManager.js';
 import { EmbeddingServiceFactory } from './embeddings/EmbeddingServiceFactory.js';
 import { logger } from './utils/logger.js';
+import cron from 'node-cron';
 // Re-export the types and classes for use in other modules
 export * from './KnowledgeGraphManager.js';
 // Export the Relation type
@@ -121,6 +122,32 @@ try {
             });
         }
     }, EMBEDDING_PROCESS_INTERVAL);
+    // Schedule daily incremental embedding regeneration
+    // Runs at 3 AM Singapore time (19:00 UTC = 3 AM UTC+8)
+    cron.schedule('0 19 * * *', async () => {
+        logger.info('Starting daily incremental embedding regeneration (3 AM SGT)');
+        try {
+            const scheduledCount = await embeddingJobManager?.scheduleIncrementalRegeneration();
+            logger.info('Daily regeneration completed', {
+                entitiesScheduled: scheduledCount,
+                time: new Date().toISOString()
+            });
+        }
+        catch (error) {
+            logger.error('Daily regeneration failed', {
+                error: error instanceof Error ? error.message : String(error),
+                stack: error instanceof Error ? error.stack : undefined,
+                time: new Date().toISOString()
+            });
+        }
+    }, {
+        timezone: 'UTC'
+    });
+    logger.info('Embedding automation configured', {
+        periodicProcessing: `Every ${EMBEDDING_PROCESS_INTERVAL}ms`,
+        dailyRegeneration: '3 AM Singapore time (19:00 UTC)',
+        timezone: 'UTC'
+    });
 }
 catch (error) {
     // Fail gracefully if embedding job manager initialization fails

package/dist/index.js.map

@@ -1 +1 @@
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package/dist/retrieval/HybridRetriever.d.ts

@@ -0,0 +1,53 @@
+/**
+ * Hybrid retrieval system that combines multiple scoring signals
+ */
+import type { HybridSearchConfig, HybridSearchResult } from './types.js';
+import type { Entity } from '../KnowledgeGraphManager.js';
+import type { Relation } from '../types/relation.js';
+import type { VectorSearchResult } from '../types/vector-store.js';
+export interface HybridRetrieverOptions {
+    /**
+     * Configuration for hybrid search scoring
+     */
+    config?: Partial<HybridSearchConfig>;
+}
+/**
+ * HybridRetriever orchestrates multiple scoring signals to rerank search results
+ */
+export declare class HybridRetriever {
+    private config;
+    private vectorScorer;
+    private graphScorer;
+    private temporalScorer;
+    private connectionScorer;
+    constructor(options?: HybridRetrieverOptions);
+    /**
+     * Rerank vector search results using hybrid scoring
+     *
+     * @param vectorResults Initial results from vector search
+     * @param entities Full entity data for each result
+     * @param relations Relations for each entity
+     * @param query Original search query
+     * @param queryVector Query embedding vector (optional)
+     * @param allEntities All entities in the graph (for graph analysis)
+     * @param allRelations All relations in the graph (for graph analysis)
+     * @returns Reranked results with score breakdowns
+     */
+    rerank(vectorResults: VectorSearchResult[], entities: Entity[], relations: Map<string, Relation[]>, query: string, queryVector?: number[], allEntities?: Entity[], allRelations?: Relation[]): Promise<HybridSearchResult[]>;
+    /**
+     * Calculate all scores for an entity
+     */
+    private calculateScores;
+    /**
+     * Generate a human-readable explanation of the score
+     */
+    private generateExplanation;
+    /**
+     * Update configuration
+     */
+    updateConfig(config: Partial<HybridSearchConfig>): void;
+    /**
+     * Get current configuration
+     */
+    getConfig(): HybridSearchConfig;
+}

package/dist/retrieval/HybridRetriever.js

@@ -0,0 +1,161 @@
+/**
+ * Hybrid retrieval system that combines multiple scoring signals
+ */
+import { DEFAULT_HYBRID_CONFIG } from './types.js';
+import { VectorSimilarityScorer } from './scorers/VectorSimilarityScorer.js';
+import { GraphTraversalScorer } from './scorers/GraphTraversalScorer.js';
+import { TemporalFreshnessScorer } from './scorers/TemporalFreshnessScorer.js';
+import { ConnectionStrengthScorer } from './scorers/ConnectionStrengthScorer.js';
+import { logger } from '../utils/logger.js';
+/**
+ * HybridRetriever orchestrates multiple scoring signals to rerank search results
+ */
+export class HybridRetriever {
+    constructor(options = {}) {
+        this.config = {
+            ...DEFAULT_HYBRID_CONFIG,
+            ...options.config,
+        };
+        // Validate weights sum to approximately 1.0
+        const totalWeight = this.config.vectorWeight +
+            this.config.graphWeight +
+            this.config.temporalWeight +
+            this.config.connectionWeight;
+        if (Math.abs(totalWeight - 1.0) > 0.01) {
+            logger.warn(`HybridRetriever: Weights sum to ${totalWeight.toFixed(2)}, not 1.0. Results may be skewed.`);
+        }
+        // Initialize scorers
+        this.vectorScorer = new VectorSimilarityScorer();
+        this.graphScorer = new GraphTraversalScorer();
+        this.temporalScorer = new TemporalFreshnessScorer();
+        this.connectionScorer = new ConnectionStrengthScorer();
+    }
+    /**
+     * Rerank vector search results using hybrid scoring
+     *
+     * @param vectorResults Initial results from vector search
+     * @param entities Full entity data for each result
+     * @param relations Relations for each entity
+     * @param query Original search query
+     * @param queryVector Query embedding vector (optional)
+     * @param allEntities All entities in the graph (for graph analysis)
+     * @param allRelations All relations in the graph (for graph analysis)
+     * @returns Reranked results with score breakdowns
+     */
+    async rerank(vectorResults, entities, relations, query, queryVector, allEntities, allRelations) {
+        const startTime = Date.now();
+        logger.debug('HybridRetriever: Starting reranking process', {
+            resultCount: vectorResults.length,
+            entityCount: entities.length,
+            config: this.config,
+        });
+        // Build results with hybrid scores
+        const hybridResults = [];
+        for (let i = 0; i < vectorResults.length; i++) {
+            const vectorResult = vectorResults[i];
+            const entity = entities[i];
+            if (!entity) {
+                logger.warn(`HybridRetriever: No entity found for result ${i} (id: ${vectorResult.id})`);
+                continue;
+            }
+            const entityRelations = relations.get(entity.name) || [];
+            // Build scoring context
+            const context = {
+                entity,
+                relations: entityRelations,
+                vectorSimilarity: vectorResult.similarity,
+                query,
+                queryVector,
+                config: this.config,
+                allEntities,
+                allRelations,
+            };
+            // Calculate individual scores
+            const scores = await this.calculateScores(context);
+            // Build result
+            const hybridResult = {
+                id: vectorResult.id,
+                entity,
+                scores,
+                metadata: {
+                    ...vectorResult.metadata,
+                    searchMethod: 'hybrid',
+                },
+            };
+            hybridResults.push(hybridResult);
+        }
+        // Sort by final score (descending)
+        hybridResults.sort((a, b) => b.scores.final - a.scores.final);
+        const timeTaken = Date.now() - startTime;
+        logger.debug('HybridRetriever: Reranking complete', {
+            resultCount: hybridResults.length,
+            timeTaken: `${timeTaken}ms`,
+            topScore: hybridResults[0]?.scores.final,
+        });
+        return hybridResults;
+    }
+    /**
+     * Calculate all scores for an entity
+     */
+    async calculateScores(context) {
+        // Calculate individual scores in parallel
+        const [vectorScore, graphScore, temporalScore, connectionScore] = await Promise.all([
+            this.vectorScorer.score(context),
+            this.graphScorer.score(context),
+            this.temporalScorer.score(context),
+            this.connectionScorer.score(context),
+        ]);
+        // Calculate weighted final score
+        const finalScore = vectorScore * this.config.vectorWeight +
+            graphScore * this.config.graphWeight +
+            temporalScore * this.config.temporalWeight +
+            connectionScore * this.config.connectionWeight;
+        // Generate explanation if debug mode is enabled
+        let explanation;
+        if (this.config.enableScoreDebug) {
+            explanation = this.generateExplanation(context, vectorScore, graphScore, temporalScore, connectionScore, finalScore);
+        }
+        return {
+            vector: vectorScore,
+            graph: graphScore,
+            temporal: temporalScore,
+            connection: connectionScore,
+            final: finalScore,
+            explanation,
+        };
+    }
+    /**
+     * Generate a human-readable explanation of the score
+     */
+    generateExplanation(context, vectorScore, graphScore, temporalScore, connectionScore, finalScore) {
+        const lines = [];
+        lines.push(`Entity: ${context.entity.name}`);
+        lines.push(`Final Score: ${(finalScore * 100).toFixed(1)}%`);
+        lines.push('');
+        lines.push('Score Breakdown:');
+        lines.push(`- ${this.vectorScorer.getExplanation(context, vectorScore)} (weight: ${this.config.vectorWeight})`);
+        lines.push(`- ${this.graphScorer.getExplanation(context, graphScore)} (weight: ${this.config.graphWeight})`);
+        lines.push(`- ${this.temporalScorer.getExplanation(context, temporalScore)} (weight: ${this.config.temporalWeight})`);
+        lines.push(`- ${this.connectionScorer.getExplanation(context, connectionScore)} (weight: ${this.config.connectionWeight})`);
+        lines.push('');
+        lines.push(`Calculation: (${vectorScore.toFixed(3)} × ${this.config.vectorWeight}) + (${graphScore.toFixed(3)} × ${this.config.graphWeight}) + (${temporalScore.toFixed(3)} × ${this.config.temporalWeight}) + (${connectionScore.toFixed(3)} × ${this.config.connectionWeight}) = ${finalScore.toFixed(3)}`);
+        return lines.join('\n');
+    }
+    /**
+     * Update configuration
+     */
+    updateConfig(config) {
+        this.config = {
+            ...this.config,
+            ...config,
+        };
+        logger.debug('HybridRetriever: Configuration updated', this.config);
+    }
+    /**
+     * Get current configuration
+     */
+    getConfig() {
+        return { ...this.config };
+    }
+}
+//# sourceMappingURL=HybridRetriever.js.map

package/dist/retrieval/HybridRetriever.js.map

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package/dist/retrieval/index.d.ts

@@ -0,0 +1,11 @@
+/**
+ * Hybrid retrieval system exports
+ */
+export { HybridRetriever } from './HybridRetriever.js';
+export type { HybridRetrieverOptions } from './HybridRetriever.js';
+export type { HybridSearchConfig, HybridSearchResult, ScoreBreakdown, ScoringContext, Scorer, } from './types.js';
+export { DEFAULT_HYBRID_CONFIG } from './types.js';
+export { VectorSimilarityScorer } from './scorers/VectorSimilarityScorer.js';
+export { GraphTraversalScorer } from './scorers/GraphTraversalScorer.js';
+export { TemporalFreshnessScorer } from './scorers/TemporalFreshnessScorer.js';
+export { ConnectionStrengthScorer } from './scorers/ConnectionStrengthScorer.js';

package/dist/retrieval/index.js

@@ -0,0 +1,10 @@
+/**
+ * Hybrid retrieval system exports
+ */
+export { HybridRetriever } from './HybridRetriever.js';
+export { DEFAULT_HYBRID_CONFIG } from './types.js';
+export { VectorSimilarityScorer } from './scorers/VectorSimilarityScorer.js';
+export { GraphTraversalScorer } from './scorers/GraphTraversalScorer.js';
+export { TemporalFreshnessScorer } from './scorers/TemporalFreshnessScorer.js';
+export { ConnectionStrengthScorer } from './scorers/ConnectionStrengthScorer.js';
+//# sourceMappingURL=index.js.map

package/dist/retrieval/index.js.map

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package/dist/retrieval/scorers/ConnectionStrengthScorer.d.ts

@@ -0,0 +1,37 @@
+/**
+ * Connection strength scorer
+ * Scores entities based on the quality and strength of their connections
+ */
+import type { Scorer, ScoringContext } from '../types.js';
+export declare class ConnectionStrengthScorer implements Scorer {
+    getName(): string;
+    /**
+     * Score based on connection strength and quality
+     *
+     * Considers:
+     * - Average confidence of relations
+     * - Average strength of relations
+     * - Number of high-quality connections (confidence >= 0.7)
+     * - Diversity of relation types
+     */
+    score(context: ScoringContext): Promise<number>;
+    getExplanation(context: ScoringContext, score: number): string;
+    /**
+     * Calculate average quality of connections
+     * Uses confidence if available, otherwise strength, otherwise 0.5
+     */
+    private calculateAverageQuality;
+    /**
+     * Calculate ratio of high-quality connections
+     * High-quality is defined as confidence/strength >= 0.7
+     */
+    private calculateHighQualityRatio;
+    /**
+     * Calculate relation type diversity
+     * Higher score for entities with diverse types of relationships
+     *
+     * Uses Shannon entropy for diversity calculation
+     * Normalized to [0, 1] range
+     */
+    private calculateRelationTypeDiversity;
+}