@helixlife-ai/xiantao 0.1.27 → 0.1.28

package/dist/base-command.js

@@ -1 +1 @@
-import{Command as n}from"@oclif/core";import{createErrorEnvelope as s,createSuccessEnvelope as o}from"./lib/envelope.js";import{XtzError as a}from"./lib/errors.js";import{resolveAgent as l}from"./lib/storage.js";import{getUpdateReminder as h}from"./lib/update.js";class f extends n{async init(){await super.init(),await this.warnIfUpdateAvailable()}async getProfile(t){return l(t)}async getAgent(t){return this.getProfile(t)}print(t,e,r,i){if(t.json){if(i){this.log(JSON.stringify(o(i.profile,i.command??this.getCommandName(),e),null,2));return}this.log(JSON.stringify(e,null,2));return}this.log(r)}async catch(t){if(this.isJsonOutputRequested()){const e=await this.getProfile(this.readProfileFlagFromArgv());this.log(JSON.stringify(s(e,this.getCommandName(),t),null,2)),this.exit(1)}throw t instanceof a&&this.error(t.message,{exit:1}),t}warnIfLegacyPlotCommand(){if(!this.id?.startsWith("plot:")||this.argv.includes("--json"))return;const t=this.id.replaceAll(":"," "),e=t.replace(/^plot\b/,"tool");this.warn(`\`xt ${t}\` \u5DF2\u517C\u5BB9\u4FDD\u7559\uFF0C\u5EFA\u8BAE\u6539\u7528 \`xt ${e}\``)}warnIfLegacyAuthCommand(){if(!this.id?.startsWith("auth:")||this.argv.includes("--json"))return;const t=this.id.replaceAll(":"," "),e=t.replace(/^auth /,"");this.warn(`\`xt ${t}\` \u5DF2\u517C\u5BB9\u4FDD\u7559\uFF0C\u5EFA\u8BAE\u6539\u7528 \`xt ${e}\``)}async warnIfUpdateAvailable(){if(this.argv.includes("--json")||!process.stdout.isTTY||this.shouldSkipUpdateReminder())return;const t=await h(this.config.version);t&&this.warn(t)}getCommandName(){return this.id?.replaceAll(":"," ")??"unknown"}isJsonOutputRequested(){return this.argv.includes("--json")}readProfileFlagFromArgv(){for(let t=0;t<this.argv.length;t+=1){const e=this.argv[t];if((e==="--profile"||e==="--agent")&&this.argv[t+1])return this.argv[t+1];if(e.startsWith("--profile="))return e.slice(10);if(e.startsWith("--agent="))return e.slice(8)}}shouldSkipUpdateReminder(){const t=this.id??"";return["login","logout","status","auth:login","auth:logout","auth:status","plot:login","plot:run","tool:exec","tool:login","tool:prepare","tool:run"].includes(t)}}export{f as XtzCommand};
+import{Command as n}from"@oclif/core";import{createErrorEnvelope as s,createSuccessEnvelope as o}from"./lib/envelope.js";import{XtzError as a}from"./lib/errors.js";import{resolveAgent as l}from"./lib/storage.js";class u extends n{async getProfile(t){return l(t)}async getAgent(t){return this.getProfile(t)}print(t,e,i,r){if(t.json){if(r){this.log(JSON.stringify(o(r.profile,r.command??this.getCommandName(),e),null,2));return}this.log(JSON.stringify(e,null,2));return}this.log(i)}async catch(t){if(this.isJsonOutputRequested()){const e=await this.getProfile(this.readProfileFlagFromArgv());this.log(JSON.stringify(s(e,this.getCommandName(),t),null,2)),this.exit(1)}throw t instanceof a&&this.error(t.message,{exit:1}),t}warnIfLegacyPlotCommand(){if(!this.id?.startsWith("plot:")||this.argv.includes("--json"))return;const t=this.id.replaceAll(":"," "),e=t.replace(/^plot\b/,"tool");this.warn(`\`xt ${t}\` \u5DF2\u517C\u5BB9\u4FDD\u7559\uFF0C\u5EFA\u8BAE\u6539\u7528 \`xt ${e}\``)}warnIfLegacyAuthCommand(){if(!this.id?.startsWith("auth:")||this.argv.includes("--json"))return;const t=this.id.replaceAll(":"," "),e=t.replace(/^auth /,"");this.warn(`\`xt ${t}\` \u5DF2\u517C\u5BB9\u4FDD\u7559\uFF0C\u5EFA\u8BAE\u6539\u7528 \`xt ${e}\``)}getCommandName(){return this.id?.replaceAll(":"," ")??"unknown"}isJsonOutputRequested(){return this.argv.includes("--json")}readProfileFlagFromArgv(){for(let t=0;t<this.argv.length;t+=1){const e=this.argv[t];if((e==="--profile"||e==="--agent")&&this.argv[t+1])return this.argv[t+1];if(e.startsWith("--profile="))return e.slice(10);if(e.startsWith("--agent="))return e.slice(8)}}}export{u as XtzCommand};

package/dist/hooks/init/update.js

@@ -0,0 +1 @@
+import{promptForUpdate as r}from"../../lib/update.js";const e=async({argv:s,config:t,context:o})=>{if(s.includes("--json")||!process.stdin.isTTY||!process.stdout.isTTY||!process.stderr.isTTY)return;await r(t.version)==="updated"&&o.exit(0)};var d=e;export{d as default};

package/dist/lib/update.js

@@ -1,2 +1,14 @@
-import{mkdir as A,readFile as E,writeFile as w}from"node:fs/promises";import y from"node:os";import m from"node:path";import{XTZ_UPDATE_CHECK_PATH as b}from"./constants.js";import{debugHttpError as P,debugHttpRequest as V,debugHttpResponse as _}from"./debug.js";import{isJsonObject as h}from"./json.js";const g="@helixlife-ai/xiantao",l=`https://registry.npmjs.org/${encodeURIComponent(g)}/latest`,k=720*60*1e3,S=1200;async function j(r){try{const t=await x(),e=await T(t);return!e||L(e,r)<=0?void 0:`\u68C0\u6D4B\u5230\u65B0\u7248\u672C ${e}\uFF08\u5F53\u524D ${r}\uFF09\uFF0C\u53EF\u8FD0\u884C \`npm install -g ${g}@latest\` \u66F4\u65B0\u3002`}catch{return}}async function T(r){const t=Date.now(),e=r.lastCheckedAt?Date.parse(r.lastCheckedAt):Number.NaN;if(Number.isFinite(e)&&t-e<k)return r.latestVersion?.trim()||void 0;const n=await U();return await I({lastCheckedAt:new Date(t).toISOString(),latestVersion:n??r.latestVersion}),n??(r.latestVersion?.trim()||void 0)}async function U(){const r={headers:{accept:"application/json"},signal:AbortSignal.timeout(S)};V(l,r);let t;try{t=await fetch(l,r)}catch(s){throw P(l,s),s}const e=await t.text();if(_(l,t,e),!t.ok)return;const n=JSON.parse(e);if(!(!h(n)||typeof n.version!="string"))return n.version.trim()||void 0}async function x(){const r=C();try{const t=await E(r,"utf8"),e=JSON.parse(t);return h(e)?{lastCheckedAt:typeof e.lastCheckedAt=="string"?e.lastCheckedAt:void 0,latestVersion:typeof e.latestVersion=="string"?e.latestVersion:void 0}:{}}catch(t){if(M(t)&&t.code==="ENOENT")return{};throw t}}async function I(r){const t=C();await A(m.dirname(t),{recursive:!0}),await w(t,`${JSON.stringify(r,null,2)}
-`,"utf8")}function L(r,t){const e=N(r),n=N(t);if(!e||!n)return r.localeCompare(t);const s=Math.max(e.core.length,n.core.length);for(let o=0;o<s;o+=1){const i=(e.core[o]??0)-(n.core[o]??0);if(i!==0)return i}if(e.prerelease.length===0&&n.prerelease.length===0)return 0;if(e.prerelease.length===0)return 1;if(n.prerelease.length===0)return-1;const a=Math.max(e.prerelease.length,n.prerelease.length);for(let o=0;o<a;o+=1){const i=e.prerelease[o],c=n.prerelease[o];if(i===void 0)return-1;if(c===void 0)return 1;const u=/^[0-9]+$/.test(i),f=/^[0-9]+$/.test(c);if(u&&f){const d=Number(i)-Number(c);if(d!==0)return d;continue}if(u)return-1;if(f)return 1;const p=i.localeCompare(c);if(p!==0)return p}return 0}function N(r){const t=r.trim().replace(/^v/,"");if(!t)return;const[e,n]=t.split("-",2),s=e.split(".").map(a=>Number.parseInt(a,10));if(!s.some(a=>Number.isNaN(a)))return{core:s,prerelease:n?n.split(".").filter(Boolean):[]}}function C(){return m.join(y.homedir(),b)}function M(r){return r instanceof Error&&"code"in r}export{j as getUpdateReminder};
+import{spawn as N}from"node:child_process";import{mkdir as C,readFile as S,writeFile as P}from"node:fs/promises";import U from"node:os";import g from"node:path";import{stdin as $,stderr as o}from"node:process";import b from"node:readline/promises";import{XTZ_UPDATE_CHECK_PATH as _}from"./constants.js";import{debugHttpError as x,debugHttpRequest as T,debugHttpResponse as v}from"./debug.js";import{XtzError as k}from"./errors.js";import{isJsonObject as A}from"./json.js";const u="@helixlife-ai/xiantao",l=`https://registry.npmjs.org/${encodeURIComponent(u)}/latest`,O="https://github.com/helixlife-ai/xiantao-cli/releases/latest",I=1200,f=`npm install -g ${u}`;async function ee(n){const e=await L(n);if(!e)return;const t=await R(n,e.latestVersion);return t==="skip"?"skipped":t==="skip-version"?(await E({lastCheckedAt:e.lastCheckedAt,latestVersion:e.latestVersion,skippedVersion:e.latestVersion}),"skipped"):(await H(),o.write(`
+Update complete. Please run xt again.
+`),"updated")}async function L(n){try{const e=await D(),t=new Date().toISOString(),r=await M();return await E({lastCheckedAt:t,latestVersion:r??e.latestVersion,skippedVersion:e.skippedVersion}),!r||j(r,n)<=0||e.skippedVersion===r?void 0:{lastCheckedAt:t,latestVersion:r}}catch{return}}async function M(){const n={headers:{accept:"application/json"},signal:AbortSignal.timeout(I)};T(l,n);let e;try{e=await fetch(l,n)}catch(i){throw x(l,i),i}const t=await e.text();if(v(l,e,t),!e.ok)return;const r=JSON.parse(t);if(!(!A(r)||typeof r.version!="string"))return r.version.trim()||void 0}async function R(n,e){const t=b.createInterface({input:$,output:o});try{for(o.write(`
+\u2728 Update available! ${n} -> ${e}
+
+`),o.write(`  Release notes: ${O}
+
+`),o.write(`\u203A 1. Update now (runs \`${f}\`)
+`),o.write(`  2. Skip
+`),o.write(`  3. Skip until next version
+
+`);;){const r=(await t.question("Select an option: ")).trim();if(r==="1")return"update";if(r===""||r==="2")return"skip";if(r==="3")return"skip-version";o.write(`Invalid option: ${r}
+`)}}finally{t.close()}}async function H(){const n=process.platform==="win32"?"npm.cmd":"npm",e=N(n,["install","-g",u],{stdio:"inherit"});await new Promise((t,r)=>{e.on("error",i=>{r(new k(`\u66F4\u65B0\u5931\u8D25: \u65E0\u6CD5\u6267\u884C \`${f}\`: ${i.message}`))}),e.on("close",(i,a)=>{if(i===0){t();return}r(new k(`\u66F4\u65B0\u5931\u8D25: \`${f}\` ${J(i,a)}`))})})}async function D(){const n=y();try{const e=await S(n,"utf8"),t=JSON.parse(e);return A(t)?{lastCheckedAt:typeof t.lastCheckedAt=="string"?t.lastCheckedAt:void 0,latestVersion:typeof t.latestVersion=="string"?t.latestVersion:void 0,skippedVersion:typeof t.skippedVersion=="string"?t.skippedVersion:void 0}:{}}catch(e){if(q(e)&&e.code==="ENOENT")return{};throw e}}async function E(n){const e=y();await C(g.dirname(e),{recursive:!0}),await P(e,`${JSON.stringify(n,null,2)}
+`,"utf8")}function J(n,e){return n!==null?`\u9000\u51FA\u7801 ${n}`:e?`\u88AB ${e} \u7EC8\u6B62`:"\u672A\u6B63\u5E38\u7ED3\u675F"}function j(n,e){const t=V(n),r=V(e);if(!t||!r)return n.localeCompare(e);const i=Math.max(t.core.length,r.core.length);for(let s=0;s<i;s+=1){const c=(t.core[s]??0)-(r.core[s]??0);if(c!==0)return c}if(t.prerelease.length===0&&r.prerelease.length===0)return 0;if(t.prerelease.length===0)return 1;if(r.prerelease.length===0)return-1;const a=Math.max(t.prerelease.length,r.prerelease.length);for(let s=0;s<a;s+=1){const c=t.prerelease[s],p=r.prerelease[s];if(c===void 0)return-1;if(p===void 0)return 1;const d=/^[0-9]+$/.test(c),m=/^[0-9]+$/.test(p);if(d&&m){const w=Number(c)-Number(p);if(w!==0)return w;continue}if(d)return-1;if(m)return 1;const h=c.localeCompare(p);if(h!==0)return h}return 0}function V(n){const e=n.trim().replace(/^v/,"");if(!e)return;const[t,r]=e.split("-",2),i=t.split(".").map(a=>Number.parseInt(a,10));if(!i.some(a=>Number.isNaN(a)))return{core:i,prerelease:r?r.split(".").filter(Boolean):[]}}function y(){return g.join(U.homedir(),_)}function q(n){return n instanceof Error&&"code"in n}export{ee as promptForUpdate};

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@helixlife-ai/xiantao",
-  "version": "0.1.27",
+  "version": "0.1.28",
   "description": "CLI for Xiantao bioinformatics tools",
   "type": "module",
   "main": "dist/index.js",
@@ -40,6 +40,9 @@
     ],
     "dirname": "xiantao",
     "helpClass": "./dist/xtz-help.js",
+    "hooks": {
+      "init": "./dist/hooks/init/update.js"
+    },
     "topicSeparator": " ",
     "commands": {
       "strategy": "pattern",