@helixlife-ai/xiantao 0.1.13 → 0.1.15

package/README.md

@@ -74,6 +74,8 @@ For agent workflows, do not use `xt tool run`. Treat `xt tool run` as the human-
 
 For the common Xiantao tool product, `tool search`, `tool inspect`, `tool run`, `tool resolve`, and `tool menu` default `toolProductUuid` to `c0b6febb-52dd-4525-970a-61bbe9e263ff`. You can override it with `--toolProductUuid`, `XIANTAO_TOOL_PRODUCT_UUID`, or `~/.config/xtz/config.json` under `xiantao.toolProductUuid`.
 
+The CLI also loads a project-root `.env` file on startup. You can set `XIANTAO_BASE_URL=https://agent.helixlife.cn` there to switch the API base URL without prefixing each command manually.
+
 `xt tool search <keyword>` searches remote tool menus by tool id, title, path, and route. `xt tool inspect <tool_id>` prints resolved metadata together with the dynamic `args_main` schema used by the tool. `xt tool run <tool_id>` runs a Xiantao bioinformatics tool in the human-first path. `xt tool exec <tool_id>` is the agent-safe submit command and also supports `--download <path>` when a local artifact is needed. `xt tool resolve <tool_id>` remains available as the low-level UUID and route lookup. `--demo` reuses the demo file metadata returned by `tool fetch-all`; otherwise `tool run` uploads the local file first and therefore also needs token auth. Run `xt login` first to authorize the stored token. When a tool exposes multiple downloadable results, `--download <path>` uses the output file extension to select the matching artifact.
 
 `xt tool run <tool_id> ... --interactive` prompts for dynamic `args_main` values before the final submit, prints reusable `--set` flags, and supports `<` for the previous item plus `/skip` for the current section.

package/bin/dev.js

@@ -1,5 +1,7 @@
 #!/usr/bin/env node
 
 import {execute} from '@oclif/core'
+import {loadProjectEnv} from './load-env.js'
 
+loadProjectEnv()
 await execute({development: true, dir: import.meta.url})

package/bin/load-env.js

@@ -0,0 +1,12 @@
+import path from 'node:path'
+import {loadEnvFile} from 'node:process'
+
+export function loadProjectEnv() {
+  try {
+    loadEnvFile(path.join(process.cwd(), '.env'))
+  } catch (error) {
+    if (error?.code !== 'ENOENT') {
+      throw error
+    }
+  }
+}

package/bin/run.js

@@ -1,5 +1,7 @@
 #!/usr/bin/env node
 
 import {execute} from '@oclif/core'
+import {loadProjectEnv} from './load-env.js'
 
+loadProjectEnv()
 await execute({dir: import.meta.url})

package/dist/commands/plot/fetch-all.js

@@ -15,7 +15,7 @@ export default class PlotFetchAll extends XtzCommand {
     static flags = {
         ...globalFlags,
         token: Flags.string({
-            description: 'Bearer token for agent.helixlife.net xiantao APIs; falls back to the stored agent token',
+            description: 'Bearer token for agent.helixlife.cn xiantao APIs; falls back to the stored agent token',
         }),
         uuid: Flags.string({
             description: 'Tool UUID used in the public.args.fetch-all payload',

package/dist/commands/plot/menu.js

@@ -15,7 +15,7 @@ export default class PlotMenu extends XtzCommand {
     static flags = {
         ...globalFlags,
         token: Flags.string({
-            description: 'Bearer token for agent.helixlife.net xiantao APIs; falls back to the stored agent token',
+            description: 'Bearer token for agent.helixlife.cn xiantao APIs; falls back to the stored agent token',
         }),
         toolProductUuid: Flags.string({
             description: 'tool_product_uuid used in the menu filter payload; defaults to the main Xiantao product UUID',

package/dist/commands/plot/menus.js

@@ -9,7 +9,7 @@ export default class PlotMenus extends XtzCommand {
     static flags = {
         ...globalFlags,
         token: Flags.string({
-            description: 'Bearer token for agent.helixlife.net xiantao APIs; falls back to the stored agent token',
+            description: 'Bearer token for agent.helixlife.cn xiantao APIs; falls back to the stored agent token',
         }),
         toolProductUuid: Flags.string({
             description: 'tool_product_uuid used in the menu filter payload; defaults to the main Xiantao product UUID',

package/dist/commands/plot/resolve.js

@@ -15,7 +15,7 @@ export default class PlotResolve extends XtzCommand {
     static flags = {
         ...globalFlags,
         token: Flags.string({
-            description: 'Bearer token for agent.helixlife.net xiantao APIs; falls back to the stored agent token',
+            description: 'Bearer token for agent.helixlife.cn xiantao APIs; falls back to the stored agent token',
         }),
         toolProductUuid: Flags.string({
             description: 'tool_product_uuid from the /products/apply/:uuid URL; defaults to the main Xiantao product UUID',

package/dist/commands/plot/run.js

@@ -408,7 +408,7 @@ export default class PlotRun extends ToolRunCommandBase {
             description: 'Tool route like app1.violin_flat in generic mode',
         }),
         token: Flags.string({
-            description: 'Bearer token for agent.helixlife.net xiantao APIs; falls back to the stored agent token',
+            description: 'Bearer token for agent.helixlife.cn xiantao APIs; falls back to the stored agent token',
         }),
         toolProductUuid: Flags.string({
             description: 'tool_product_uuid used to auto-resolve module UUID and route in generic mode; defaults to the main Xiantao product UUID',

package/dist/commands/tool/exec.js

@@ -40,7 +40,7 @@ export default class ToolExec extends ToolRunCommandBase {
             description: 'Tool route like app1.violin_flat in generic mode',
         }),
         token: Flags.string({
-            description: 'Bearer token for agent.helixlife.net xiantao APIs; falls back to the stored agent token',
+            description: 'Bearer token for agent.helixlife.cn xiantao APIs; falls back to the stored agent token',
         }),
         toolProductUuid: Flags.string({
             description: 'tool_product_uuid used to auto-resolve module UUID and route in generic mode; defaults to the main Xiantao product UUID',

package/dist/commands/tool/inspect.js

@@ -17,7 +17,7 @@ export default class ToolInspect extends XtzCommand {
     static flags = {
         ...globalFlags,
         token: Flags.string({
-            description: 'Bearer token for agent.helixlife.net xiantao APIs; falls back to the stored agent token',
+            description: 'Bearer token for agent.helixlife.cn xiantao APIs; falls back to the stored agent token',
         }),
         toolProductUuid: Flags.string({
             description: 'tool_product_uuid used in the menu filter payload; defaults to the main Xiantao product UUID',

package/dist/commands/tool/prepare.js

@@ -38,7 +38,7 @@ export default class ToolPrepare extends ToolRunCommandBase {
             description: 'Tool route like app1.violin_flat in generic mode',
         }),
         token: Flags.string({
-            description: 'Bearer token for agent.helixlife.net xiantao APIs; falls back to the stored agent token',
+            description: 'Bearer token for agent.helixlife.cn xiantao APIs; falls back to the stored agent token',
         }),
         toolProductUuid: Flags.string({
             description: 'tool_product_uuid used to auto-resolve module UUID and route in generic mode; defaults to the main Xiantao product UUID',

package/dist/commands/tool/search.js

@@ -15,7 +15,7 @@ export default class ToolSearch extends XtzCommand {
     static flags = {
         ...globalFlags,
         token: Flags.string({
-            description: 'Bearer token for agent.helixlife.net xiantao APIs; falls back to the stored agent token',
+            description: 'Bearer token for agent.helixlife.cn xiantao APIs; falls back to the stored agent token',
         }),
         toolProductUuid: Flags.string({
             description: 'tool_product_uuid used in the menu filter payload; defaults to the main Xiantao product UUID',

package/dist/lib/constants.js

@@ -1,10 +1,11 @@
 export const DEFAULT_AGENT = 'opencode';
 export const XTZ_CONFIG_PATH = '.config/xtz/config.json';
 export const XTZ_UPDATE_CHECK_PATH = '.config/xtz/update-check.json';
-export const AUTH_URL_ENDPOINT = 'https://agent.helixlife.net/api/v1/agent/skills/auth-url';
-export const XIANTAO_BIO_API_ENDPOINT = 'https://agent.helixlife.net/api/v1/agent/bio-api';
-export const XIANTAO_TOOL_MENUS_ENDPOINT = 'https://agent.helixlife.net/api/v1/agent/tool/menus';
+export const XIANTAO_BASE_URL = (process.env.XIANTAO_BASE_URL?.trim() || 'https://agent.helixlife.cn').replace(/\/+$/, '');
+export const AUTH_URL_ENDPOINT = `${XIANTAO_BASE_URL}/api/v1/agent/skills/auth-url`;
+export const XIANTAO_BIO_API_ENDPOINT = `${XIANTAO_BASE_URL}/api/v1/agent/bio-api`;
+export const XIANTAO_TOOL_MENUS_ENDPOINT = `${XIANTAO_BASE_URL}/api/v1/agent/tool/menus`;
 export const DEFAULT_XIANTAO_TOOL_PRODUCT_UUID = 'c0b6febb-52dd-4525-970a-61bbe9e263ff';
-export const CHECK_TOKEN_ENDPOINT = 'https://agent.helixlife.net/api/v1/agent/skills/check-token';
-export const UPLOAD_CONFIG_ENDPOINT = 'https://agent.helixlife.net/api/v1/agent/upload/config?type=bio&oss_type=bio';
-export const BIO_API_ENDPOINT = 'https://agent.helixlife.net/api/v1/agent/bio-api';
+export const CHECK_TOKEN_ENDPOINT = `${XIANTAO_BASE_URL}/api/v1/agent/skills/check-token`;
+export const UPLOAD_CONFIG_ENDPOINT = `${XIANTAO_BASE_URL}/api/v1/agent/upload/config?type=bio&oss_type=bio`;
+export const BIO_API_ENDPOINT = `${XIANTAO_BASE_URL}/api/v1/agent/bio-api`;

package/dist/lib/xiantao.js

@@ -1,4 +1,4 @@
-import { XIANTAO_BIO_API_ENDPOINT, XIANTAO_TOOL_MENUS_ENDPOINT } from './constants.js';
+import { XIANTAO_BASE_URL, XIANTAO_BIO_API_ENDPOINT, XIANTAO_TOOL_MENUS_ENDPOINT } from './constants.js';
 import { XtzError } from './errors.js';
 import { requestJson } from './http.js';
 export async function fetchToolMenu(auth, menuUuid, toolProductUuid) {
@@ -156,9 +156,9 @@ function encodeMenuFilter(filter) {
 export function buildXiantaoHeaders(auth, hasJsonBody = false) {
     const headers = {
         Authorization: `Bearer ${auth.token}`,
-        origin: 'https://agent.helixlife.net',
+        origin: XIANTAO_BASE_URL,
         platform: 'pc',
-        referer: 'https://agent.helixlife.net',
+        referer: XIANTAO_BASE_URL,
         source: 'PC',
     };
     if (hasJsonBody) {

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@helixlife-ai/xiantao",
-  "version": "0.1.13",
+  "version": "0.1.15",
   "description": "CLI for Xiantao bioinformatics tools",
   "type": "module",
   "main": "dist/index.js",