@helix-agent/core 0.3.0 → 0.5.0

package/dist/engine/abi.d.ts

@@ -0,0 +1,82 @@
+export declare const ERC20_ABI: readonly [{
+    readonly name: "approve";
+    readonly type: "function";
+    readonly stateMutability: "nonpayable";
+    readonly inputs: readonly [{
+        readonly name: "spender";
+        readonly type: "address";
+    }, {
+        readonly name: "amount";
+        readonly type: "uint256";
+    }];
+    readonly outputs: readonly [{
+        readonly name: "";
+        readonly type: "bool";
+    }];
+}, {
+    readonly name: "balanceOf";
+    readonly type: "function";
+    readonly stateMutability: "view";
+    readonly inputs: readonly [{
+        readonly name: "account";
+        readonly type: "address";
+    }];
+    readonly outputs: readonly [{
+        readonly name: "";
+        readonly type: "uint256";
+    }];
+}, {
+    readonly name: "allowance";
+    readonly type: "function";
+    readonly stateMutability: "view";
+    readonly inputs: readonly [{
+        readonly name: "owner";
+        readonly type: "address";
+    }, {
+        readonly name: "spender";
+        readonly type: "address";
+    }];
+    readonly outputs: readonly [{
+        readonly name: "";
+        readonly type: "uint256";
+    }];
+}];
+export declare const SWAP_ROUTER_ABI: readonly [{
+    readonly name: "exactInputSingle";
+    readonly type: "function";
+    readonly stateMutability: "payable";
+    readonly inputs: readonly [{
+        readonly name: "params";
+        readonly type: "tuple";
+        readonly components: readonly [{
+            readonly name: "tokenIn";
+            readonly type: "address";
+        }, {
+            readonly name: "tokenOut";
+            readonly type: "address";
+        }, {
+            readonly name: "fee";
+            readonly type: "uint24";
+        }, {
+            readonly name: "recipient";
+            readonly type: "address";
+        }, {
+            readonly name: "deadline";
+            readonly type: "uint256";
+        }, {
+            readonly name: "amountIn";
+            readonly type: "uint256";
+        }, {
+            readonly name: "amountOutMinimum";
+            readonly type: "uint256";
+        }, {
+            readonly name: "sqrtPriceLimitX96";
+            readonly type: "uint160";
+        }];
+    }];
+    readonly outputs: readonly [{
+        readonly name: "amountOut";
+        readonly type: "uint256";
+    }];
+}];
+//# sourceMappingURL=abi.d.ts.map

package/dist/engine/abi.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"abi.d.ts","sourceRoot":"","sources":["../../src/engine/abi.ts"],"names":[],"mappings":"AAAA,eAAO,MAAM,SAAS;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EA4BZ,CAAC;AAEX,eAAO,MAAM,eAAe;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAuBlB,CAAC"}

package/dist/engine/abi.js

@@ -0,0 +1,54 @@
+export const ERC20_ABI = [
+    {
+        name: 'approve',
+        type: 'function',
+        stateMutability: 'nonpayable',
+        inputs: [
+            { name: 'spender', type: 'address' },
+            { name: 'amount', type: 'uint256' },
+        ],
+        outputs: [{ name: '', type: 'bool' }],
+    },
+    {
+        name: 'balanceOf',
+        type: 'function',
+        stateMutability: 'view',
+        inputs: [{ name: 'account', type: 'address' }],
+        outputs: [{ name: '', type: 'uint256' }],
+    },
+    {
+        name: 'allowance',
+        type: 'function',
+        stateMutability: 'view',
+        inputs: [
+            { name: 'owner', type: 'address' },
+            { name: 'spender', type: 'address' },
+        ],
+        outputs: [{ name: '', type: 'uint256' }],
+    },
+];
+export const SWAP_ROUTER_ABI = [
+    {
+        name: 'exactInputSingle',
+        type: 'function',
+        stateMutability: 'payable',
+        inputs: [
+            {
+                name: 'params',
+                type: 'tuple',
+                components: [
+                    { name: 'tokenIn', type: 'address' },
+                    { name: 'tokenOut', type: 'address' },
+                    { name: 'fee', type: 'uint24' },
+                    { name: 'recipient', type: 'address' },
+                    { name: 'deadline', type: 'uint256' },
+                    { name: 'amountIn', type: 'uint256' },
+                    { name: 'amountOutMinimum', type: 'uint256' },
+                    { name: 'sqrtPriceLimitX96', type: 'uint160' },
+                ],
+            },
+        ],
+        outputs: [{ name: 'amountOut', type: 'uint256' }],
+    },
+];
+//# sourceMappingURL=abi.js.map

package/dist/engine/abi.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"abi.js","sourceRoot":"","sources":["../../src/engine/abi.ts"],"names":[],"mappings":"AAAA,MAAM,CAAC,MAAM,SAAS,GAAG;IACvB;QACE,IAAI,EAAE,SAAS;QACf,IAAI,EAAE,UAAU;QAChB,eAAe,EAAE,YAAY;QAC7B,MAAM,EAAE;YACN,EAAE,IAAI,EAAE,SAAS,EAAE,IAAI,EAAE,SAAS,EAAE;YACpC,EAAE,IAAI,EAAE,QAAQ,EAAE,IAAI,EAAE,SAAS,EAAE;SACpC;QACD,OAAO,EAAE,CAAC,EAAE,IAAI,EAAE,EAAE,EAAE,IAAI,EAAE,MAAM,EAAE,CAAC;KACtC;IACD;QACE,IAAI,EAAE,WAAW;QACjB,IAAI,EAAE,UAAU;QAChB,eAAe,EAAE,MAAM;QACvB,MAAM,EAAE,CAAC,EAAE,IAAI,EAAE,SAAS,EAAE,IAAI,EAAE,SAAS,EAAE,CAAC;QAC9C,OAAO,EAAE,CAAC,EAAE,IAAI,EAAE,EAAE,EAAE,IAAI,EAAE,SAAS,EAAE,CAAC;KACzC;IACD;QACE,IAAI,EAAE,WAAW;QACjB,IAAI,EAAE,UAAU;QAChB,eAAe,EAAE,MAAM;QACvB,MAAM,EAAE;YACN,EAAE,IAAI,EAAE,OAAO,EAAE,IAAI,EAAE,SAAS,EAAE;YAClC,EAAE,IAAI,EAAE,SAAS,EAAE,IAAI,EAAE,SAAS,EAAE;SACrC;QACD,OAAO,EAAE,CAAC,EAAE,IAAI,EAAE,EAAE,EAAE,IAAI,EAAE,SAAS,EAAE,CAAC;KACzC;CACO,CAAC;AAEX,MAAM,CAAC,MAAM,eAAe,GAAG;IAC7B;QACE,IAAI,EAAE,kBAAkB;QACxB,IAAI,EAAE,UAAU;QAChB,eAAe,EAAE,SAAS;QAC1B,MAAM,EAAE;YACN;gBACE,IAAI,EAAE,QAAQ;gBACd,IAAI,EAAE,OAAO;gBACb,UAAU,EAAE;oBACV,EAAE,IAAI,EAAE,SAAS,EAAE,IAAI,EAAE,SAAS,EAAE;oBACpC,EAAE,IAAI,EAAE,UAAU,EAAE,IAAI,EAAE,SAAS,EAAE;oBACrC,EAAE,IAAI,EAAE,KAAK,EAAE,IAAI,EAAE,QAAQ,EAAE;oBAC/B,EAAE,IAAI,EAAE,WAAW,EAAE,IAAI,EAAE,SAAS,EAAE;oBACtC,EAAE,IAAI,EAAE,UAAU,EAAE,IAAI,EAAE,SAAS,EAAE;oBACrC,EAAE,IAAI,EAAE,UAAU,EAAE,IAAI,EAAE,SAAS,EAAE;oBACrC,EAAE,IAAI,EAAE,kBAAkB,EAAE,IAAI,EAAE,SAAS,EAAE;oBAC7C,EAAE,IAAI,EAAE,mBAAmB,EAAE,IAAI,EAAE,SAAS,EAAE;iBAC/C;aACF;SACF;QACD,OAAO,EAAE,CAAC,EAAE,IAAI,EAAE,WAAW,EAAE,IAAI,EAAE,SAAS,EAAE,CAAC;KAClD;CACO,CAAC"}

package/dist/engine/dex-presets.d.ts

@@ -0,0 +1,4 @@
+import type { DexConfig } from './types.js';
+export declare const DEX_PRESETS: Record<string, DexConfig>;
+export declare function getDexPreset(chainId: number): DexConfig | null;
+//# sourceMappingURL=dex-presets.d.ts.map

package/dist/engine/dex-presets.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"dex-presets.d.ts","sourceRoot":"","sources":["../../src/engine/dex-presets.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,YAAY,CAAC;AAE5C,eAAO,MAAM,WAAW,EAAE,MAAM,CAAC,MAAM,EAAE,SAAS,CAiCjD,CAAC;AAEF,wBAAgB,YAAY,CAAC,OAAO,EAAE,MAAM,GAAG,SAAS,GAAG,IAAI,CAO9D"}

package/dist/engine/dex-presets.js

@@ -0,0 +1,43 @@
+export const DEX_PRESETS = {
+    'base': {
+        routerAddress: '0x3fC91A3afd70395Cd496C647d5a6CC9D4B2b7FAD',
+        quoterAddress: '0x3d4e44Eb1374240CE5F1B871ab261CD16335B76a',
+        wethAddress: '0x4200000000000000000000000000000000000006',
+        defaultTokens: {
+            usdc: '0x833589fCD6eDb6E08f4c7C32D4f71b54bdA02913',
+            dai: '0x50c5725949A6F0c72E6C4a641F24049A917DB0Cb',
+        },
+        defaultSlippage: 0.005,
+        defaultDeadlineSeconds: 300,
+    },
+    'base-sepolia': {
+        routerAddress: '0x050E797f3625EC8785265e1d9BDd4799b97528A1',
+        wethAddress: '0x4200000000000000000000000000000000000006',
+        defaultTokens: {
+            usdc: '0x036CbD53842c5426634e7929541eC2318f3dCF7e',
+        },
+        defaultSlippage: 0.01,
+        defaultDeadlineSeconds: 600,
+    },
+    'ethereum': {
+        routerAddress: '0x3fC91A3afd70395Cd496C647d5a6CC9D4B2b7FAD',
+        quoterAddress: '0x61fFE014bA17989E743c5F6cB21bF9697530B21e',
+        wethAddress: '0xC02aaA39b223FE8D0A0e5C4F27eAD9083C756Cc2',
+        defaultTokens: {
+            usdc: '0xA0b86991c6218b36c1d19D4a2e9Eb0cE3606eB48',
+            usdt: '0xdAC17F958D2ee523a2206206994597C13D831ec7',
+            dai: '0x6B175474E89094C44Da98b954EedeAC495271d0F',
+        },
+        defaultSlippage: 0.005,
+        defaultDeadlineSeconds: 300,
+    },
+};
+export function getDexPreset(chainId) {
+    switch (chainId) {
+        case 8453: return DEX_PRESETS['base'];
+        case 84532: return DEX_PRESETS['base-sepolia'];
+        case 1: return DEX_PRESETS['ethereum'];
+        default: return null;
+    }
+}
+//# sourceMappingURL=dex-presets.js.map

package/dist/engine/dex-presets.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"dex-presets.js","sourceRoot":"","sources":["../../src/engine/dex-presets.ts"],"names":[],"mappings":"AAEA,MAAM,CAAC,MAAM,WAAW,GAA8B;IACpD,MAAM,EAAE;QACN,aAAa,EAAE,4CAA4C;QAC3D,aAAa,EAAE,4CAA4C;QAC3D,WAAW,EAAE,4CAA4C;QACzD,aAAa,EAAE;YACb,IAAI,EAAE,4CAA4C;YAClD,GAAG,EAAE,4CAA4C;SAClD;QACD,eAAe,EAAE,KAAK;QACtB,sBAAsB,EAAE,GAAG;KAC5B;IACD,cAAc,EAAE;QACd,aAAa,EAAE,4CAA4C;QAC3D,WAAW,EAAE,4CAA4C;QACzD,aAAa,EAAE;YACb,IAAI,EAAE,4CAA4C;SACnD;QACD,eAAe,EAAE,IAAI;QACrB,sBAAsB,EAAE,GAAG;KAC5B;IACD,UAAU,EAAE;QACV,aAAa,EAAE,4CAA4C;QAC3D,aAAa,EAAE,4CAA4C;QAC3D,WAAW,EAAE,4CAA4C;QACzD,aAAa,EAAE;YACb,IAAI,EAAE,4CAA4C;YAClD,IAAI,EAAE,4CAA4C;YAClD,GAAG,EAAE,4CAA4C;SAClD;QACD,eAAe,EAAE,KAAK;QACtB,sBAAsB,EAAE,GAAG;KAC5B;CACF,CAAC;AAEF,MAAM,UAAU,YAAY,CAAC,OAAe;IAC1C,QAAQ,OAAO,EAAE,CAAC;QAChB,KAAK,IAAI,CAAC,CAAC,OAAO,WAAW,CAAC,MAAM,CAAC,CAAC;QACtC,KAAK,KAAK,CAAC,CAAC,OAAO,WAAW,CAAC,cAAc,CAAC,CAAC;QAC/C,KAAK,CAAC,CAAC,CAAC,OAAO,WAAW,CAAC,UAAU,CAAC,CAAC;QACvC,OAAO,CAAC,CAAC,OAAO,IAAI,CAAC;IACvB,CAAC;AACH,CAAC"}

package/dist/engine/gene-map.d.ts

@@ -6,13 +6,17 @@ export declare class GeneMap {
     private stmtList;
     private stmtCount;
     private stmtUpdatePlatforms;
+    private cache;
+    private cacheLoadedAt;
+    private readonly CACHE_TTL_MS;
     constructor(dbPath?: string);
+    private cacheKey;
+    private warmCache;
+    private isCacheStale;
     lookup(code: ErrorCode, category: FailureCategory): GeneCapsule | null;
     addPlatform(code: ErrorCode, category: FailureCategory, platform: Platform): void;
     store(gene: GeneCapsule): void;
-    /** RL update after successful repair */
     recordSuccess(code: string, category: string, repairMs: number): void;
-    /** RL update after failed repair */
     recordFailure(code: string, category: string): void;
     list(): GeneCapsule[];
     immuneCount(): number;
@@ -26,6 +30,26 @@ export declare class GeneMap {
             count: number;
         }[];
     };
+    seed(): {
+        seeded: number;
+    };
+    combine(): {
+        merged: number;
+    };
+    gc(): {
+        merged: number;
+        pruned: number;
+        archived: number;
+    };
+    generateRepairId(): string;
+    checkRepairInProgress(code: string, category: string): {
+        inProgress: boolean;
+        repairId?: string;
+        txHash?: string;
+    };
+    logRepairStart(repairId: string, code: string, category: string, strategy: string): void;
+    logRepairComplete(repairId: string, txHash?: string): void;
+    logRepairFailed(repairId: string): void;
     close(): void;
 }
 //# sourceMappingURL=gene-map.d.ts.map

package/dist/engine/gene-map.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"gene-map.d.ts","sourceRoot":"","sources":["../../src/engine/gene-map.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,SAAS,EAAE,eAAe,EAAE,WAAW,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAC;AAyCpF,qBAAa,OAAO;IAClB,OAAO,CAAC,EAAE,CAAoB;IAC9B,OAAO,CAAC,UAAU,CAAqB;IACvC,OAAO,CAAC,UAAU,CAAqB;IACvC,OAAO,CAAC,QAAQ,CAAqB;IACrC,OAAO,CAAC,SAAS,CAAqB;IACtC,OAAO,CAAC,mBAAmB,CAAqB;gBAEpC,MAAM,GAAE,MAAmB;IA8BvC,MAAM,CAAC,IAAI,EAAE,SAAS,EAAE,QAAQ,EAAE,eAAe,GAAG,WAAW,GAAG,IAAI;IActE,WAAW,CAAC,IAAI,EAAE,SAAS,EAAE,QAAQ,EAAE,eAAe,EAAE,QAAQ,EAAE,QAAQ,GAAG,IAAI;IAUjF,KAAK,CAAC,IAAI,EAAE,WAAW,GAAG,IAAI;IAc9B,wCAAwC;IACxC,aAAa,CAAC,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,IAAI;IAkBrE,oCAAoC;IACpC,aAAa,CAAC,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,IAAI;IAgBnD,IAAI,IAAI,WAAW,EAAE;IAIrB,WAAW,IAAI,MAAM;IAIrB,cAAc,CAAC,WAAW,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM;IAQ7D,KAAK,IAAI;QAAE,UAAU,EAAE,MAAM,CAAC;QAAC,SAAS,EAAE,MAAM,CAAC;QAAC,SAAS,EAAE,MAAM,EAAE,CAAC;QAAC,aAAa,EAAE;YAAE,QAAQ,EAAE,MAAM,CAAC;YAAC,KAAK,EAAE,MAAM,CAAA;SAAE,EAAE,CAAA;KAAE;IAmB7H,KAAK,IAAI,IAAI;CAGd"}
+{"version":3,"file":"gene-map.d.ts","sourceRoot":"","sources":["../../src/engine/gene-map.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,SAAS,EAAE,eAAe,EAAE,WAAW,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAC;AAsDpF,qBAAa,OAAO;IAClB,OAAO,CAAC,EAAE,CAAoB;IAC9B,OAAO,CAAC,UAAU,CAAqB;IACvC,OAAO,CAAC,UAAU,CAAqB;IACvC,OAAO,CAAC,QAAQ,CAAqB;IACrC,OAAO,CAAC,SAAS,CAAqB;IACtC,OAAO,CAAC,mBAAmB,CAAqB;IAGhD,OAAO,CAAC,KAAK,CAAmD;IAChE,OAAO,CAAC,aAAa,CAAK;IAC1B,OAAO,CAAC,QAAQ,CAAC,YAAY,CAAU;gBAE3B,MAAM,GAAE,MAAmB;IA2BvC,OAAO,CAAC,QAAQ;IAEhB,OAAO,CAAC,SAAS;IAQjB,OAAO,CAAC,YAAY;IAIpB,MAAM,CAAC,IAAI,EAAE,SAAS,EAAE,QAAQ,EAAE,eAAe,GAAG,WAAW,GAAG,IAAI;IAsBtE,WAAW,CAAC,IAAI,EAAE,SAAS,EAAE,QAAQ,EAAE,eAAe,EAAE,QAAQ,EAAE,QAAQ,GAAG,IAAI;IAWjF,KAAK,CAAC,IAAI,EAAE,WAAW,GAAG,IAAI;IAW9B,aAAa,CAAC,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,IAAI;IAQrE,aAAa,CAAC,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,IAAI;IAQnD,IAAI,IAAI,WAAW,EAAE;IACrB,WAAW,IAAI,MAAM;IAErB,cAAc,CAAC,WAAW,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM;IAM7D,KAAK;;;;;sBAKyM,MAAM;mBAA4B,MAAM;;;IAKtP,IAAI,IAAI;QAAE,MAAM,EAAE,MAAM,CAAA;KAAE;IAgB1B,OAAO,IAAI;QAAE,MAAM,EAAE,MAAM,CAAA;KAAE;IAkB7B,EAAE,IAAI;QAAE,MAAM,EAAE,MAAM,CAAC;QAAC,MAAM,EAAE,MAAM,CAAC;QAAC,QAAQ,EAAE,MAAM,CAAA;KAAE;IAU1D,gBAAgB,IAAI,MAAM;IAE1B,qBAAqB,CAAC,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG;QAAE,UAAU,EAAE,OAAO,CAAC;QAAC,QAAQ,CAAC,EAAE,MAAM,CAAC;QAAC,MAAM,CAAC,EAAE,MAAM,CAAA;KAAE;IAQlH,cAAc,CAAC,QAAQ,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,IAAI;IAIxF,iBAAiB,CAAC,QAAQ,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,MAAM,GAAG,IAAI;IAI1D,eAAe,CAAC,QAAQ,EAAE,MAAM,GAAG,IAAI;IAIvC,KAAK,IAAI,IAAI;CACd"}

package/dist/engine/gene-map.js

@@ -1,4 +1,5 @@
 import Database from 'better-sqlite3';
+import { SEED_GENES } from './seed-genes.js';
 const SCHEMA = `
 CREATE TABLE IF NOT EXISTS genes (
   id INTEGER PRIMARY KEY AUTOINCREMENT,
@@ -17,6 +18,18 @@ CREATE TABLE IF NOT EXISTS genes (
   last_used_at TEXT NOT NULL DEFAULT (datetime('now')),
   UNIQUE(failure_code, category)
 );
+
+CREATE TABLE IF NOT EXISTS repair_log (
+  id INTEGER PRIMARY KEY AUTOINCREMENT,
+  repair_id TEXT UNIQUE NOT NULL,
+  failure_code TEXT NOT NULL,
+  category TEXT NOT NULL,
+  strategy TEXT NOT NULL,
+  status TEXT NOT NULL DEFAULT 'pending',
+  tx_hash TEXT,
+  created_at DATETIME DEFAULT (datetime('now')),
+  completed_at DATETIME
+);
 `;
 function parseRow(row) {
     return {
@@ -43,42 +56,61 @@ export class GeneMap {
     stmtList;
     stmtCount;
     stmtUpdatePlatforms;
+    // L1 in-memory cache (OPT-9)
+    cache = new Map();
+    cacheLoadedAt = 0;
+    CACHE_TTL_MS = 30_000;
     constructor(dbPath = ':memory:') {
         this.db = new Database(dbPath);
         this.db.pragma('journal_mode = WAL');
         this.db.exec(SCHEMA);
-        this.stmtLookup = this.db.prepare(`
-      SELECT * FROM genes WHERE failure_code = ? AND category = ? ORDER BY q_value DESC LIMIT 1
-    `);
+        this.stmtLookup = this.db.prepare(`SELECT * FROM genes WHERE failure_code = ? AND category = ? ORDER BY q_value DESC LIMIT 1`);
         this.stmtUpsert = this.db.prepare(`
       INSERT INTO genes (failure_code, category, strategy, params, success_count, avg_repair_ms, platforms, q_value, consecutive_failures)
       VALUES (@failureCode, @category, @strategy, @params, @successCount, @avgRepairMs, @platforms, @qValue, @consecutiveFailures)
       ON CONFLICT(failure_code, category) DO UPDATE SET
-        strategy = @strategy,
-        params = @params,
+        strategy = @strategy, params = @params,
         success_count = success_count + 1,
         avg_repair_ms = (avg_repair_ms * success_count + @avgRepairMs) / (success_count + 1),
-        platforms = @platforms,
-        q_value = @qValue,
-        consecutive_failures = @consecutiveFailures,
+        platforms = @platforms, q_value = @qValue, consecutive_failures = @consecutiveFailures,
         last_used_at = datetime('now')
     `);
         this.stmtList = this.db.prepare(`SELECT * FROM genes ORDER BY q_value DESC, success_count DESC`);
         this.stmtCount = this.db.prepare(`SELECT COUNT(*) as count FROM genes`);
-        this.stmtUpdatePlatforms = this.db.prepare(`
-      UPDATE genes SET platforms = ?, last_used_at = datetime('now') WHERE failure_code = ? AND category = ?
-    `);
+        this.stmtUpdatePlatforms = this.db.prepare(`UPDATE genes SET platforms = ?, last_used_at = datetime('now') WHERE failure_code = ? AND category = ?`);
+        // Seed on first run + warm cache
+        this.seed();
+        this.warmCache();
+    }
+    // ── L1 Cache (OPT-9) ──
+    cacheKey(code, category) { return `${code}:${category}`; }
+    warmCache() {
+        this.cache.clear();
+        for (const row of this.db.prepare('SELECT * FROM genes').all()) {
+            this.cache.set(this.cacheKey(row.failure_code, row.category), row);
+        }
+        this.cacheLoadedAt = Date.now();
     }
+    isCacheStale() { return Date.now() - this.cacheLoadedAt > this.CACHE_TTL_MS; }
+    // ── Core CRUD ──
     lookup(code, category) {
+        const key = this.cacheKey(code, category);
+        // L1 cache hit
+        if (!this.isCacheStale() && this.cache.has(key)) {
+            const cached = this.cache.get(key);
+            this.db.prepare(`UPDATE genes SET last_used_at = datetime('now'), success_count = success_count + 1 WHERE failure_code = ? AND category = ?`).run(code, category);
+            const gene = parseRow(cached);
+            gene.successCount += 1;
+            return gene;
+        }
+        // L2: SQLite
         const row = this.stmtLookup.get(code, category);
         if (!row)
             return null;
-        this.db.prepare(`
-      UPDATE genes SET last_used_at = datetime('now'), success_count = success_count + 1
-      WHERE failure_code = ? AND category = ?
-    `).run(code, category);
+        this.db.prepare(`UPDATE genes SET last_used_at = datetime('now'), success_count = success_count + 1 WHERE failure_code = ? AND category = ?`).run(code, category);
+        this.cache.set(key, row);
         const gene = parseRow(row);
-        gene.successCount += 1; // reflect the bump we just did
+        gene.successCount += 1;
         return gene;
     }
     addPlatform(code, category, platform) {
@@ -89,92 +121,127 @@ export class GeneMap {
         if (!platforms.includes(platform)) {
             platforms.push(platform);
             this.stmtUpdatePlatforms.run(JSON.stringify(platforms), code, category);
+            this.cache.delete(this.cacheKey(code, category)); // invalidate
         }
     }
     store(gene) {
         this.stmtUpsert.run({
-            failureCode: gene.failureCode,
-            category: gene.category,
-            strategy: gene.strategy,
+            failureCode: gene.failureCode, category: gene.category, strategy: gene.strategy,
             params: JSON.stringify(gene.params, (_k, v) => typeof v === 'bigint' ? v.toString() : v),
-            successCount: gene.successCount,
-            avgRepairMs: gene.avgRepairMs,
+            successCount: gene.successCount, avgRepairMs: gene.avgRepairMs,
             platforms: JSON.stringify(gene.platforms),
-            qValue: gene.qValue ?? 0.5,
-            consecutiveFailures: gene.consecutiveFailures ?? 0,
+            qValue: gene.qValue ?? 0.5, consecutiveFailures: gene.consecutiveFailures ?? 0,
         });
+        this.cache.delete(this.cacheKey(gene.failureCode, gene.category)); // invalidate
     }
-    /** RL update after successful repair */
     recordSuccess(code, category, repairMs) {
         const row = this.stmtLookup.get(code, category);
         if (!row)
             return;
-        const alpha = 0.1;
-        const oldQ = row.q_value;
-        const newQ = oldQ + alpha * (1.0 - oldQ);
-        this.db.prepare(`
-      UPDATE genes SET
-        q_value = ?,
-        avg_repair_ms = (avg_repair_ms * success_count + ?) / (success_count + 1),
-        success_count = success_count + 1,
-        last_success_at = ?,
-        consecutive_failures = 0,
-        last_used_at = datetime('now')
-      WHERE failure_code = ? AND category = ?
-    `).run(newQ, repairMs, Date.now(), code, category);
+        const newQ = row.q_value + 0.1 * (1.0 - row.q_value);
+        this.db.prepare(`UPDATE genes SET q_value = ?, avg_repair_ms = (avg_repair_ms * success_count + ?) / (success_count + 1), success_count = success_count + 1, last_success_at = ?, consecutive_failures = 0, last_used_at = datetime('now') WHERE failure_code = ? AND category = ?`).run(newQ, repairMs, Date.now(), code, category);
+        this.cache.delete(this.cacheKey(code, category));
     }
-    /** RL update after failed repair */
     recordFailure(code, category) {
         const row = this.stmtLookup.get(code, category);
         if (!row)
             return;
-        const alpha = 0.1;
-        const oldQ = row.q_value;
-        const newQ = oldQ + alpha * (0.0 - oldQ);
-        this.db.prepare(`
-      UPDATE genes SET
-        q_value = ?,
-        last_failed_at = ?,
-        consecutive_failures = consecutive_failures + 1,
-        last_used_at = datetime('now')
-      WHERE failure_code = ? AND category = ?
-    `).run(newQ, Date.now(), code, category);
-    }
-    list() {
-        return this.stmtList.all().map(parseRow);
-    }
-    immuneCount() {
-        return this.stmtCount.get().count;
+        const newQ = row.q_value + 0.1 * (0.0 - row.q_value);
+        this.db.prepare(`UPDATE genes SET q_value = ?, last_failed_at = ?, consecutive_failures = consecutive_failures + 1, last_used_at = datetime('now') WHERE failure_code = ? AND category = ?`).run(newQ, Date.now(), code, category);
+        this.cache.delete(this.cacheKey(code, category));
     }
+    list() { return this.stmtList.all().map(parseRow); }
+    immuneCount() { return this.stmtCount.get().count; }
     getSuccessRate(failureCode, strategy) {
-        const row = this.db.prepare(`
-      SELECT success_count, q_value FROM genes WHERE failure_code = ? AND strategy = ?
-    `).get(failureCode, strategy);
+        const row = this.db.prepare(`SELECT success_count, q_value FROM genes WHERE failure_code = ? AND strategy = ?`).get(failureCode, strategy);
         if (!row || row.success_count < 3)
             return 0.5;
         return Math.min(0.5 + (row.success_count / 100), 0.95);
     }
     stats() {
         const rows = this.stmtList.all();
-        const allPlatforms = new Set();
+        const allP = new Set();
         let qSum = 0;
         for (const r of rows) {
             qSum += r.q_value;
             for (const p of JSON.parse(r.platforms))
-                allPlatforms.add(p);
+                allP.add(p);
+        }
+        return { totalGenes: rows.length, avgQValue: rows.length > 0 ? Math.round((qSum / rows.length) * 100) / 100 : 0, platforms: [...allP], topStrategies: rows.slice(0, 10).map(r => ({ strategy: r.strategy, count: r.success_count })) };
+    }
+    // ── Seed (D9: Cold Start) ──
+    seed() {
+        const cnt = this.db.prepare('SELECT COUNT(*) as cnt FROM genes').get().cnt;
+        if (cnt > 0)
+            return { seeded: 0 };
+        let seeded = 0;
+        const ins = this.db.prepare(`INSERT OR IGNORE INTO genes (failure_code, category, strategy, params, success_count, avg_repair_ms, platforms, q_value, consecutive_failures) VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?)`);
+        this.db.transaction(() => {
+            for (const g of SEED_GENES) {
+                ins.run(g.failureCode, g.category, g.strategy, JSON.stringify(g.params), g.successCount, g.avgRepairMs, JSON.stringify(g.platforms), g.qValue, g.consecutiveFailures);
+                seeded++;
+            }
+        })();
+        return { seeded };
+    }
+    // ── Gene Combine (OPT-3: ELL paper) ──
+    combine() {
+        let merged = 0;
+        const groups = this.db.prepare(`SELECT failure_code, category, COUNT(*) as cnt FROM genes GROUP BY failure_code, category HAVING cnt > 1`).all();
+        for (const g of groups) {
+            const genes = this.db.prepare(`SELECT * FROM genes WHERE failure_code = ? AND category = ? ORDER BY q_value DESC`).all(g.failure_code, g.category);
+            if (genes.length <= 1)
+                continue;
+            const best = genes[0];
+            const allP = new Set();
+            let totalSC = 0;
+            let weightedMs = 0;
+            for (const gn of genes) {
+                totalSC += gn.success_count;
+                weightedMs += gn.avg_repair_ms * gn.success_count;
+                for (const p of JSON.parse(gn.platforms))
+                    allP.add(p);
+            }
+            const maxQ = Math.max(...genes.map(gn => gn.q_value));
+            this.db.prepare(`UPDATE genes SET platforms = ?, success_count = ?, avg_repair_ms = ?, q_value = ?, last_used_at = datetime('now') WHERE id = ?`).run(JSON.stringify([...allP]), totalSC, weightedMs / Math.max(totalSC, 1), maxQ, best.id);
+            for (const gn of genes.slice(1)) {
+                this.db.prepare('DELETE FROM genes WHERE id = ?').run(gn.id);
+                merged++;
+            }
         }
-        return {
-            totalGenes: rows.length,
-            avgQValue: rows.length > 0 ? Math.round((qSum / rows.length) * 100) / 100 : 0,
-            platforms: [...allPlatforms],
-            topStrategies: rows.slice(0, 10).map(r => ({
-                strategy: r.strategy,
-                count: r.success_count,
-            })),
-        };
-    }
-    close() {
-        this.db.close();
+        if (merged > 0)
+            this.warmCache();
+        return { merged };
+    }
+    gc() {
+        const { merged } = this.combine();
+        const pruned = this.db.prepare(`DELETE FROM genes WHERE q_value < 0.1 AND consecutive_failures >= 3`).run().changes;
+        const archived = this.db.prepare(`SELECT COUNT(*) as cnt FROM genes WHERE last_used_at < datetime('now', '-180 days')`).get().cnt;
+        if (pruned > 0)
+            this.warmCache();
+        return { merged, pruned, archived };
+    }
+    // ── Idempotency (D5) ──
+    generateRepairId() { return `repair_${Date.now()}_${Math.random().toString(36).slice(2, 8)}`; }
+    checkRepairInProgress(code, category) {
+        const r = this.db.prepare(`SELECT repair_id, status, tx_hash FROM repair_log WHERE failure_code = ? AND category = ? AND status IN ('pending', 'completed') AND created_at > datetime('now', '-5 minutes') ORDER BY created_at DESC LIMIT 1`).get(code, category);
+        if (!r)
+            return { inProgress: false };
+        if (r.status === 'pending')
+            return { inProgress: true, repairId: r.repair_id };
+        if (r.status === 'completed' && r.tx_hash)
+            return { inProgress: true, repairId: r.repair_id, txHash: r.tx_hash };
+        return { inProgress: false };
+    }
+    logRepairStart(repairId, code, category, strategy) {
+        this.db.prepare(`INSERT OR IGNORE INTO repair_log (repair_id, failure_code, category, strategy, status) VALUES (?, ?, ?, ?, 'pending')`).run(repairId, code, category, strategy);
+    }
+    logRepairComplete(repairId, txHash) {
+        this.db.prepare(`UPDATE repair_log SET status = 'completed', tx_hash = ?, completed_at = datetime('now') WHERE repair_id = ?`).run(txHash ?? null, repairId);
+    }
+    logRepairFailed(repairId) {
+        this.db.prepare(`UPDATE repair_log SET status = 'failed', completed_at = datetime('now') WHERE repair_id = ?`).run(repairId);
     }
+    close() { this.db.close(); }
 }
 //# sourceMappingURL=gene-map.js.map

package/dist/engine/gene-map.js.map

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package/dist/engine/lifecycle.d.ts

@@ -0,0 +1,3 @@
+import type { GeneMap } from './gene-map.js';
+export declare function registerShutdownHandler(geneMap: GeneMap): void;
+//# sourceMappingURL=lifecycle.d.ts.map

package/dist/engine/lifecycle.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"lifecycle.d.ts","sourceRoot":"","sources":["../../src/engine/lifecycle.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,eAAe,CAAC;AAI7C,wBAAgB,uBAAuB,CAAC,OAAO,EAAE,OAAO,GAAG,IAAI,CAiB9D"}

package/dist/engine/lifecycle.js

@@ -0,0 +1,20 @@
+let registered = false;
+export function registerShutdownHandler(geneMap) {
+    if (registered)
+        return;
+    registered = true;
+    const shutdown = (signal) => {
+        console.error(`[helix] ${signal} received, flushing Gene Map...`);
+        try {
+            geneMap.close();
+            console.error('[helix] Gene Map flushed and closed.');
+        }
+        catch {
+            // already closed
+        }
+        process.exit(0);
+    };
+    process.on('SIGTERM', () => shutdown('SIGTERM'));
+    process.on('SIGINT', () => shutdown('SIGINT'));
+}
+//# sourceMappingURL=lifecycle.js.map

package/dist/engine/lifecycle.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"lifecycle.js","sourceRoot":"","sources":["../../src/engine/lifecycle.ts"],"names":[],"mappings":"AAEA,IAAI,UAAU,GAAG,KAAK,CAAC;AAEvB,MAAM,UAAU,uBAAuB,CAAC,OAAgB;IACtD,IAAI,UAAU;QAAE,OAAO;IACvB,UAAU,GAAG,IAAI,CAAC;IAElB,MAAM,QAAQ,GAAG,CAAC,MAAc,EAAE,EAAE;QAClC,OAAO,CAAC,KAAK,CAAC,WAAW,MAAM,iCAAiC,CAAC,CAAC;QAClE,IAAI,CAAC;YACH,OAAO,CAAC,KAAK,EAAE,CAAC;YAChB,OAAO,CAAC,KAAK,CAAC,sCAAsC,CAAC,CAAC;QACxD,CAAC;QAAC,MAAM,CAAC;YACP,iBAAiB;QACnB,CAAC;QACD,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAClB,CAAC,CAAC;IAEF,OAAO,CAAC,EAAE,CAAC,SAAS,EAAE,GAAG,EAAE,CAAC,QAAQ,CAAC,SAAS,CAAC,CAAC,CAAC;IACjD,OAAO,CAAC,EAAE,CAAC,QAAQ,EAAE,GAAG,EAAE,CAAC,QAAQ,CAAC,QAAQ,CAAC,CAAC,CAAC;AACjD,CAAC"}

package/dist/engine/pcec.d.ts

@@ -13,7 +13,10 @@ export declare class PcecEngine {
     };
     private readonly MAX_CYCLES;
     private cycleCount;
+    /** D6: Systematic failure tracker — detect repeated identical failures */
+    private failureTracker;
     constructor(geneMap: GeneMap, agentId?: string, options?: WrapOptions);
+    private checkSystematic;
     registerAdapter(adapter: PlatformAdapter): void;
     /** D16: Negative pattern guard — prevent false positives from success messages */
     private shouldSkipPerceive;

package/dist/engine/pcec.d.ts.map

@@ -1 +1 @@
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