@hawkeyexl/manni 4.5.0 → 4.7.0

package/dist/cli-HXWYUKGJ.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/family/cli.ts","../src/family/core/envelope.ts","../src/family/core/in-play.ts","../src/family/commands/check.ts","../src/family/core/changed.ts","../src/family/core/said-once.ts","../src/family/commands/status.ts"],"sourcesContent":["/**\n * The two family verbs, `manni check` and `manni status`, mounted on the\n * umbrella with `addCommand`. They are the only verbs it carries: each\n * orchestrates other domains' command cores and owns no checks of its own.\n *\n * Run by hand or in CI they follow the family contract: 0 clean, 1 errors, 2\n * operational, the report on stdout and notices on stderr. Under a Claude\n * Code hook envelope on stdin they speak the hook protocol instead, which\n * changes where output goes and what the exit code means, never what is\n * checked beyond the scope.\n */\nimport { resolve } from \"node:path\";\nimport { Command, Option } from \"commander\";\nimport { shouldColor } from \"../shared/color.js\";\nimport { errorMessage } from \"../shared/errors.js\";\nimport { programName } from \"../shared/program-name.js\";\nimport { fail } from \"../shared/run.js\";\nimport { notice } from \"../shared/warn.js\";\nimport { readEnvelope, type Envelope } from \"./core/envelope.js\";\nimport { FamilyError, labelFrom } from \"./core/in-play.js\";\nimport {\n  CHECK_FORMATS,\n  EDIT_TOOLS,\n  exitCodeFor,\n  hookFailure,\n  hookReply,\n  render,\n  runFamilyCheck,\n  runTurnCheck,\n  turnReply,\n  type CheckFormat,\n  type FamilyCheckRun,\n  type HookReply,\n  type Scope,\n} from \"./commands/check.js\";\nimport {\n  STATUS_FORMATS,\n  agentLines,\n  exportGeneratedBy,\n  renderStatus,\n  runStatus,\n  type StatusFormat,\n} from \"./commands/status.js\";\n\ninterface CheckCliOptions {\n  config?: string;\n  format: CheckFormat;\n  /** `--no-color`: `false` when given. */\n  color: boolean;\n}\n\ninterface StatusCliOptions {\n  config?: string;\n  format: StatusFormat;\n}\n\nfunction send(reply: HookReply): void {\n  if (reply.stdout !== undefined) process.stdout.write(reply.stdout);\n  if (reply.stderr !== undefined) process.stderr.write(reply.stderr);\n  process.exitCode = reply.exitCode;\n}\n\n/**\n * The file checks a hook asks for, or `undefined` when this event runs none.\n * A SubagentStop runs none: its subagent's turn is judged alone.\n */\nexport function hookScope(envelope: Envelope, cwd: string): { scope: Scope; file?: string } | undefined {\n  if (envelope.event === \"Stop\") return { scope: { kind: \"changed\" } };\n  if (envelope.event !== \"PostToolUse\") return undefined;\n  if (envelope.toolName === undefined || !EDIT_TOOLS.includes(envelope.toolName)) return undefined;\n  if (envelope.filePath === undefined) return undefined;\n  const file = labelFrom(cwd, resolve(cwd, envelope.filePath));\n  return { scope: { kind: \"paths\", paths: [file] }, file };\n}\n\n/** The events that end a turn, which tracevals judges (proposal 0079). */\nconst TURN_EVENTS: readonly string[] = [\"Stop\", \"SubagentStop\"];\n\nasync function checkUnderHook(paths: string[], options: CheckCliOptions, envelope: Envelope): Promise<void> {\n  const cwd = resolve(envelope.cwd ?? process.cwd());\n  // Positional paths win over the envelope's own scope.\n  const asked: { scope: Scope; file?: string } | undefined =\n    paths.length > 0 ? { scope: { kind: \"paths\", paths }, file: paths.join(\", \") } : hookScope(envelope, cwd);\n  const turnEvent = TURN_EVENTS.includes(envelope.event);\n  if (asked === undefined && !turnEvent) return;\n  let run: FamilyCheckRun | undefined;\n  if (asked !== undefined) {\n    try {\n      run = await runFamilyCheck({\n        cwd,\n        scope: asked.scope,\n        allowMissing: true,\n        ...(options.config === undefined ? {} : { configPath: options.config }),\n        // stdout and stderr are the hook's channels; a notice is not for the agent.\n        onNotice: () => undefined,\n      });\n    } catch (err) {\n      // Nothing set up for the file checks is not the end of a turn's judgement.\n      if (!(err instanceof FamilyError && err.quiet) && !turnEvent) {\n        send(hookFailure(errorMessage(err), envelope, asked.file));\n        return;\n      }\n    }\n  }\n  if (!turnEvent) {\n    if (run !== undefined) send(hookReply(run, envelope));\n    return;\n  }\n  send(turnReply(run, await runTurnCheck(envelope, cwd), envelope));\n}\n\nexport function buildCheck(): Command {\n  return new Command(\"check\")\n    .description(\"Run every check this repository has set up, and nothing else\")\n    .argument(\"[paths...]\", \"files, directories, or globs; the per-file checks run on the collection members among them\")\n    .option(\"-c, --config <path>\", \"path to a manni config file\")\n    .addOption(\n      new Option(\"-f, --format <format>\", \"output (not read under a hook)\")\n        .choices(CHECK_FORMATS)\n        .default(\"pretty\"),\n    )\n    .option(\"--no-color\", \"disable colored output\")\n    .showHelpAfterError(\"(add --help for usage)\")\n    .exitOverride()\n    .addHelpText(\n      \"after\",\n      [\n        \"\",\n        \"Examples:\",\n        \"  manni check                       # every in-play check, the CI gate\",\n        \"  manni check docs/limits.md        # per-file checks on one page\",\n        \"  manni check -f github             # in a GitHub workflow\",\n        \"  manni check docs/ -f json         # scripting form\",\n      ].join(\"\\n\"),\n    )\n    .action(async (paths: string[], options: CheckCliOptions) => {\n      const envelope = await readEnvelope();\n      if (envelope !== undefined) {\n        await checkUnderHook(paths, options, envelope);\n        return;\n      }\n      try {\n        const run = await runFamilyCheck({\n          scope: paths.length > 0 ? { kind: \"paths\", paths } : { kind: \"all\" },\n          ...(options.config === undefined ? {} : { configPath: options.config }),\n          onNotice: notice,\n        });\n        for (const check of run.checks) {\n          if (check.status === \"error\") {\n            process.stderr.write(`${programName()} ${check.command} could not run: ${check.message}\\n`);\n          }\n        }\n        const color = shouldColor({ noColor: !options.color, isTTY: process.stdout.isTTY });\n        const text = render(run, options.format, color);\n        if (text.length > 0) process.stdout.write(`${text}\\n`);\n        process.exitCode = exitCodeFor(run);\n      } catch (err) {\n        fail(err);\n      }\n    });\n}\n\nexport function buildStatus(): Command {\n  return new Command(\"status\")\n    .description(\"Say what is set up here, and so what manni check runs\")\n    .option(\"-c, --config <path>\", \"path to a manni config file\")\n    .addOption(\n      new Option(\"-f, --format <format>\", \"output\").choices(STATUS_FORMATS).default(\"pretty\"),\n    )\n    .showHelpAfterError(\"(add --help for usage)\")\n    .exitOverride()\n    .action(async (options: StatusCliOptions) => {\n      const envelope = await readEnvelope();\n      const configOption = options.config === undefined ? {} : { configPath: options.config };\n      if (envelope?.event === \"SessionStart\") {\n        try {\n          const report = await runStatus({ cwd: resolve(envelope.cwd ?? process.cwd()), ...configOption });\n          // The agent lines promise checks, so they need a domain in play to be true.\n          const lines = report.domains.some((d) => d.status === \"in-play\") ? `\\n\\n${agentLines(report)}` : \"\";\n          process.stdout.write(`${renderStatus(report, \"pretty\")}${lines}\\n`);\n          exportGeneratedBy(envelope);\n        } catch {\n          // No config, or one that cannot be read: the session starts without a word.\n        }\n        return;\n      }\n      try {\n        const report = await runStatus(configOption);\n        process.stdout.write(`${renderStatus(report, options.format)}\\n`);\n      } catch (err) {\n        fail(err);\n      }\n    });\n}\n","/**\n * The Claude Code hook envelope, detected rather than switched.\n *\n * A hook command gets one JSON object on stdin, and Claude Code closes the\n * stream after it. When stdin is not a terminal and parses as an object with a\n * string `hook_event_name`, `manni check` and `manni status` speak the hook\n * protocol. Anything else is a run by hand, and stdin is left unread beyond\n * that one look. The look never hangs: `readStdin` gives up on a stream that\n * stays silent, which is what an inherited pipe nobody writes to looks like.\n */\nimport { readStdin } from \"../../tracevals/capture/hook.js\";\n\nexport interface Envelope {\n  /** `hook_event_name`: `PostToolUse`, `Stop`, `SessionStart`, … */\n  event: string;\n  /** The directory the hook fired in; relative paths resolve from it. */\n  cwd?: string;\n  /** `tool_name`, on a tool event. */\n  toolName?: string;\n  /** `tool_input.file_path`, or `tool_input.notebook_path` for a notebook. */\n  filePath?: string;\n  /** `stop_hook_active`: this stop already follows one repair pass. */\n  stopHookActive: boolean;\n  /** `model`, on `SessionStart`: a string, or an object carrying `id`. */\n  model?: string;\n  /** `session_id`. */\n  sessionId?: string;\n  /** `transcript_path`: the session's own transcript. */\n  transcriptPath?: string;\n  /** `agent_transcript_path`, on `SubagentStop`: the subagent's own transcript. */\n  agentTranscriptPath?: string;\n  /** `agent_id`, on `SubagentStop`. */\n  agentId?: string;\n  /** `agent_type`, on `SubagentStop`. */\n  agentType?: string;\n  /** `last_assistant_message`, on `Stop` and `SubagentStop`. */\n  lastAssistantMessage?: string;\n}\n\nfunction str(value: unknown): string | undefined {\n  return typeof value === \"string\" && value.length > 0 ? value : undefined;\n}\n\nfunction record(value: unknown): Record<string, unknown> | undefined {\n  return value !== null && typeof value === \"object\" && !Array.isArray(value)\n    ? (value as Record<string, unknown>)\n    : undefined;\n}\n\n/** The envelope in `text`, or `undefined` when `text` is not one. */\nexport function parseEnvelope(text: string): Envelope | undefined {\n  let parsed: unknown;\n  try {\n    parsed = JSON.parse(text);\n  } catch {\n    return undefined;\n  }\n  const doc = record(parsed);\n  const event = str(doc?.hook_event_name);\n  if (doc === undefined || event === undefined) return undefined;\n  const input = record(doc.tool_input);\n  const filePath = str(input?.file_path) ?? str(input?.notebook_path);\n  const cwd = str(doc.cwd);\n  const toolName = str(doc.tool_name);\n  const model = str(doc.model) ?? str(record(doc.model)?.id);\n  const strings = {\n    sessionId: str(doc.session_id),\n    transcriptPath: str(doc.transcript_path),\n    agentTranscriptPath: str(doc.agent_transcript_path),\n    agentId: str(doc.agent_id),\n    agentType: str(doc.agent_type),\n    lastAssistantMessage: str(doc.last_assistant_message),\n  };\n  const given = Object.fromEntries(Object.entries(strings).filter(([, v]) => v !== undefined)) as Partial<\n    Record<keyof typeof strings, string>\n  >;\n  return {\n    event,\n    stopHookActive: doc.stop_hook_active === true,\n    ...(cwd === undefined ? {} : { cwd }),\n    ...(toolName === undefined ? {} : { toolName }),\n    ...(filePath === undefined ? {} : { filePath }),\n    ...(model === undefined ? {} : { model }),\n    ...given,\n  };\n}\n\n/** The envelope on stdin, or `undefined` for a run by hand. */\nexport async function readEnvelope(\n  stream: NodeJS.ReadStream = process.stdin,\n): Promise<Envelope | undefined> {\n  if (stream.isTTY) return undefined;\n  try {\n    return parseEnvelope(await readStdin(stream));\n  } catch {\n    // Too large to be an envelope: a run by hand with something piped in.\n    return undefined;\n  }\n}\n","/**\n * What is set up, and so what `manni check` runs.\n *\n * There are no keys of the family's own. A domain is in play when its own\n * section of `manni.config.yaml` exists, or when the content carries its\n * declarations. Nothing manni would apply by default counts as set up:\n *\n * | Domain | In play when |\n * |---|---|\n * | meta | a file's schema set is more than the built-in defaults: `meta:` covers it, or it names its own `$schema` |\n * | cite | a page carries citations |\n * | lint | `lint:` exists |\n * | docevals | a page resolves evals, from `docevals:` or its own declarations |\n * | term | the collections hold a term |\n * | graph | `graph:` exists |\n * | tracevals | `tracevals.conformance` exists; it judges the turn a Stop or SubagentStop hook ends |\n * | a11y | never run by `check`: it needs a running site |\n *\n * Only members of a declared collection are file-checked. tracevals judges a\n * turn, not files, so it needs no collection.\n */\nimport { relative, resolve, sep } from \"node:path\";\nimport { parse as parseYaml } from \"yaml\";\nimport type { CollectionConfig } from \"../../shared/collections.js\";\nimport {\n  findFamilyConfigFile,\n  readFamilyConfigFile,\n  type ConfigFile,\n} from \"../../shared/config-file.js\";\nimport { ToolError } from \"../../shared/errors.js\";\nimport { memberOf, retainMembers } from \"../../meta/core/collections.js\";\nimport { resolveTargetSet } from \"../../meta/internal.js\";\n\n/** An operational error of `manni check` or `manni status`: exit 2. */\nexport class FamilyError extends ToolError {\n  constructor(\n    message: string,\n    /** Set for the two conditions a hook answers with silence. */\n    readonly quiet = false,\n  ) {\n    super(message);\n    this.name = \"FamilyError\";\n  }\n}\n\nexport function noConfigError(cwd: string): FamilyError {\n  return new FamilyError(\n    `No manni.config.yaml found from ${cwd} up to the repository root. manni check runs the checks it sets up.`,\n    true,\n  );\n}\n\nexport function nothingSetUpError(): FamilyError {\n  return new FamilyError(\n    \"Nothing is set up to check in manni.config.yaml. manni status says what each domain needs.\",\n    true,\n  );\n}\n\n/** The domains `check` can run, in the order it runs and reports them. */\nexport const DOMAINS = [\"meta\", \"cite\", \"lint\", \"docevals\", \"term\", \"graph\"] as const;\nexport type Domain = (typeof DOMAINS)[number];\n\n/** Each domain's check, as `check` names it. */\nexport const COMMANDS: Readonly<Record<Domain, string>> = {\n  meta: \"meta validate\",\n  cite: \"cite check\",\n  lint: \"lint check\",\n  docevals: \"docevals run\",\n  term: \"term check\",\n  graph: \"graph check\",\n};\n\n/** Why a domain is not in play, as both `check` and `status` say it. */\nexport const NOT_SET_UP: Readonly<Record<Domain, string>> = {\n  meta: \"no meta: section\",\n  cite: \"no page carries citations\",\n  lint: \"no lint: section\",\n  docevals: \"no page resolves any evals\",\n  term: \"no terms in any collection\",\n  graph: \"no graph: section\",\n};\n\n/** Why `meta` skips files when `meta:` exists but covers none of them. */\nexport const META_DEFAULTS_ONLY = \"only the built-in default schemas cover these files\";\n\n/**\n * The domains `check` does not run here, and what to run instead. tracevals\n * leaves this list when `tracevals.conformance` exists (`Family.conformance`).\n */\nexport const NOT_CHECKED: ReadonlyArray<readonly [string, string]> = [\n  [\"a11y\", \"run manni a11y check against a running site\"],\n  [\"tracevals\", \"run manni tracevals run over sessions\"],\n];\n\n/** `1 page`, `2 pages`. */\nexport function plural(n: number, one: string, many = `${one}s`): string {\n  return `${String(n)} ${n === 1 ? one : many}`;\n}\n\nexport interface Family {\n  file: ConfigFile;\n  /**\n   * The config each domain core is handed, so every one reads this file\n   * rather than discovering its own: as typed, or as discovery found it,\n   * relative to `cwd`.\n   */\n  configPath: string;\n  /** The top-level keys of the file: `meta`, `lint`, `graph`, … */\n  sections: ReadonlySet<string>;\n  /** `tracevals.conformance` exists: tracevals judges each turn under the hooks. */\n  conformance: boolean;\n  collections: readonly CollectionConfig[];\n}\n\nfunction toError(message: string): FamilyError {\n  return new FamilyError(message);\n}\n\nexport async function loadFamily(cwd: string, configPath?: string): Promise<Family> {\n  const file =\n    configPath === undefined\n      ? await findFamilyConfigFile(cwd, toError)\n      : await readFamilyConfigFile(configPath, cwd, toError);\n  if (file === null) throw noConfigError(cwd);\n  // Already parsed once by the loader, which would have thrown on bad YAML.\n  const doc = parseYaml(file.text) as unknown;\n  const top = record(doc);\n  const sections = new Set(top === undefined ? [] : Object.keys(top));\n  const conformance = record(top?.tracevals)?.conformance !== undefined;\n  return { file, configPath: configPath ?? file.source, sections, conformance, collections: file.collections };\n}\n\nfunction record(value: unknown): Record<string, unknown> | undefined {\n  return value !== null && typeof value === \"object\" && !Array.isArray(value)\n    ? (value as Record<string, unknown>)\n    : undefined;\n}\n\n/** A path as a label relative to `cwd`, posix, the way the domains print one. */\nexport function labelFrom(cwd: string, path: string): string {\n  return relative(cwd, path).split(sep).join(\"/\");\n}\n\n/** The collections a file at `label` (relative to `cwd`) belongs to. */\nexport function collectionsOf(family: Family, cwd: string, label: string): string[] {\n  return memberOf(family.collections, family.file.dir, cwd, label);\n}\n\n/** Every member of every collection, labelled from `cwd`. */\nexport async function listMembers(family: Family, cwd: string): Promise<string[]> {\n  const dir = family.file.dir;\n  const { files } = await resolveTargetSet({\n    inputs: family.collections.flatMap((c) => c.paths),\n    cwd: dir,\n    allowEmpty: true,\n  });\n  return retainMembers(files, (label) => memberOf(family.collections, dir, dir, label)).map(\n    (label) => labelFrom(cwd, resolve(dir, label)),\n  );\n}\n","/**\n * `manni check`: every check the repository has set up, and nothing else.\n *\n * It owns no checks. Each one is a domain's own command core, run in process\n * with the family config handed to it, and each report is that domain's own\n * reporter's output. What this adds is the choice of what runs (`in-play.ts`),\n * the scope, and one verdict over all of it.\n *\n * Scope:\n *\n * - `all`: every in-play check over every collection, per-file and set-wide.\n *   Each domain runs bare, exactly as its own CI step would.\n * - `paths`: the per-file checks on the collection members among the paths.\n * - `changed`: the per-file checks on the git working tree's changes, plus\n *   `cite` set-wide. `term` runs set-wide too when a collection document\n *   changed or was removed. `graph` never runs here; only `all` checks it.\n *   A clean tree runs nothing.\n *\n * `cite` is per-file on paths and set-wide otherwise: a source edit can drift\n * any page's citation, so after a session the whole set is what is checked.\n */\nimport { basename, extname, resolve } from \"node:path\";\nimport pkg from \"../../../package.json\" with { type: \"json\" };\nimport { ToolError, errorMessage } from \"../../shared/errors.js\";\nimport { warn } from \"../../shared/warn.js\";\nimport { resolveTargetSet } from \"../../meta/internal.js\";\nimport { supportedExtensions } from \"../../meta/extractors/index.js\";\nimport type { TurnCheckInput, TurnCheckResult } from \"../../tracevals/commands/check.js\";\nimport { changedFiles } from \"../core/changed.js\";\nimport { sayOnce } from \"../core/said-once.js\";\nimport type { Envelope } from \"../core/envelope.js\";\nimport {\n  COMMANDS,\n  DOMAINS,\n  META_DEFAULTS_ONLY,\n  NOT_SET_UP,\n  collectionsOf,\n  labelFrom,\n  listMembers,\n  loadFamily,\n  nothingSetUpError,\n  plural,\n  type Domain,\n  type Family,\n} from \"../core/in-play.js\";\nimport { withSharedWalks } from \"../../meta/core/load-files.js\";\n\nexport const CHECK_FORMATS = [\"pretty\", \"json\", \"github\"] as const;\nexport type CheckFormat = (typeof CHECK_FORMATS)[number];\n\nexport type Scope =\n  | { kind: \"all\" }\n  | { kind: \"paths\"; paths: string[] }\n  | { kind: \"changed\" };\n\nexport interface FamilyCheckOptions {\n  /** Where paths resolve and the domains run. Default `process.cwd()`. */\n  cwd?: string;\n  /** `-c, --config`. */\n  configPath?: string;\n  scope: Scope;\n  /**\n   * Leave out a named path that does not exist, rather than failing on it. A\n   * hook names a file the edit may have just removed.\n   */\n  allowMissing?: boolean;\n  /** Diagnostics: the outside-every-collection notice, and the domains' own. */\n  onNotice?: (message: string) => void;\n}\n\n/** A check that ran. `render` is the domain's own reporter. */\nexport interface RanCheck {\n  command: string;\n  status: \"pass\" | \"fail\";\n  render: (format: CheckFormat, color: boolean) => string;\n}\n\n/** A check that did not run: not in play, or it could not. */\nexport interface NotRunCheck {\n  command: string;\n  status: \"skipped\" | \"error\";\n  message: string;\n}\n\nexport type CheckOutcome = RanCheck | NotRunCheck;\n\nexport interface FamilyCheckRun {\n  status: \"pass\" | \"fail\";\n  /** The collection members the per-file checks covered, labelled from `cwd`. */\n  files: string[];\n  checks: CheckOutcome[];\n}\n\ntype Outcome =\n  | { skipped: string }\n  | { failed: boolean; render: (format: CheckFormat, color: boolean) => string };\n\ninterface Context {\n  family: Family;\n  cwd: string;\n  /** The per-file inputs, or `[]` for a bare run over the collections. */\n  inputs: string[];\n  onNotice: (message: string) => void;\n}\n\n/**\n * Each domain's command core and reporter are imported where it runs: a hook\n * checks one page with four domains, and the other two (the RDF stack among\n * them) are worth not loading.\n */\nasync function runDomain(domain: Domain, ctx: Context): Promise<Outcome> {\n  const { family, cwd, inputs, onNotice } = ctx;\n  const configPath = family.configPath;\n  switch (domain) {\n    case \"meta\": {\n      const [{ runValidate }, { render: renderMeta }] = await Promise.all([\n        import(\"../../meta/commands/validate.js\"),\n        import(\"../../meta/reporters/index.js\"),\n      ]);\n      const run = await runValidate({ inputs, configPath, cwd, skipDefaultOnly: true, onNotice });\n      if (run.results.length === 0) {\n        return { skipped: family.sections.has(\"meta\") ? META_DEFAULTS_ONLY : NOT_SET_UP.meta };\n      }\n      return {\n        failed: run.summary.failed > 0,\n        render: (format, color) =>\n          renderMeta(format, run.results, run.summary, { color, quiet: true, frame: run.frame, onNotice }),\n      };\n    }\n    case \"cite\": {\n      const [{ runCheck: runCite }, { renderCheckPretty: citePretty }, { renderCheckJson: citeJson }, { renderCheckGithub: citeGithub }] =\n        await Promise.all([\n          import(\"../../cite/commands/check.js\"),\n          import(\"../../cite/reporters/pretty.js\"),\n          import(\"../../cite/reporters/json.js\"),\n          import(\"../../cite/reporters/github.js\"),\n        ]);\n      const run = await runCite({ inputs, configPath, cwd, onNotice });\n      if (!run.pages.some((p) => p.citations.length > 0 || p.findings.length > 0)) {\n        return { skipped: NOT_SET_UP.cite };\n      }\n      return {\n        failed: run.summary.failed > 0,\n        render: (format, color) =>\n          format === \"json\"\n            ? citeJson(run)\n            : format === \"github\"\n              ? citeGithub(run)\n              : citePretty(run, { color, quiet: true }),\n      };\n    }\n    case \"lint\": {\n      if (!family.sections.has(\"lint\")) return { skipped: NOT_SET_UP.lint };\n      const [{ runLint }, { render: renderLint }] = await Promise.all([\n        import(\"../../lint/commands/lint.js\"),\n        import(\"../../lint/reporters/index.js\"),\n      ]);\n      const run = await runLint({ inputs, configPath, cwd, onNotice });\n      return {\n        failed: run.summary.failed > 0,\n        render: (format, color) => renderLint(run, format, { color }),\n      };\n    }\n    case \"docevals\": {\n      const [{ runRun: runDocevals }, { render: renderDocevals }, { DocevalsError }] = await Promise.all([\n        import(\"../../docevals/commands/run.js\"),\n        import(\"../../docevals/reporters/index.js\"),\n        import(\"../../docevals/types.js\"),\n      ]);\n      let report;\n      try {\n        report = await runDocevals(inputs, {\n          config: configPath,\n          cwd,\n          deterministicOnly: true,\n          generate: false,\n          execution: false,\n          toolVersion: pkg.version,\n        });\n      } catch (err) {\n        if (err instanceof DocevalsError && err.code === \"nothing-resolved\") {\n          return { skipped: NOT_SET_UP.docevals };\n        }\n        throw err;\n      }\n      return {\n        failed: report.exitCode !== 0,\n        render: (format, color) => renderDocevals(report, format, { color }),\n      };\n    }\n    case \"term\": {\n      const [{ runCheck: runTerm }, { renderFindingsPretty: termPretty }, { renderFindingsJson: termJson }, { renderFindingsGithub: termGithub }] =\n        await Promise.all([\n          import(\"../../term/commands/check.js\"),\n          import(\"../../term/reporters/pretty.js\"),\n          import(\"../../term/reporters/json.js\"),\n          import(\"../../term/reporters/github.js\"),\n        ]);\n      const report = await runTerm({ inputs, configPath, cwd, allowEmpty: true, onNotice });\n      if (report.terms === 0) return { skipped: NOT_SET_UP.term };\n      return {\n        failed: report.summary.failed > 0,\n        render: (format, color) =>\n          format === \"json\"\n            ? termJson(report)\n            : format === \"github\"\n              ? termGithub(report)\n              : termPretty(report, { color, references: true }),\n      };\n    }\n    case \"graph\": {\n      if (!family.sections.has(\"graph\")) return { skipped: NOT_SET_UP.graph };\n      const [{ buildGraph }, { runCheck: runGraph, renderCheck: renderGraph }] = await Promise.all([\n        import(\"../../graph/commands/build.js\"),\n        import(\"../../graph/commands/check.js\"),\n      ]);\n      const built = await buildGraph({ config: configPath, cwd });\n      for (const warning of built.warnings) onNotice(warning);\n      const report = await runGraph({ config: configPath, cwd, turtle: built.turtle });\n      return {\n        failed: report.exitCode !== 0,\n        render: (format) => renderGraph(report, format),\n      };\n    }\n  }\n}\n\nasync function outcome(domain: Domain, ctx: Context): Promise<CheckOutcome> {\n  const command = COMMANDS[domain];\n  try {\n    const result = await runDomain(domain, ctx);\n    if (\"skipped\" in result) return { command, status: \"skipped\", message: result.skipped };\n    return { command, status: result.failed ? \"fail\" : \"pass\", render: result.render };\n  } catch (err) {\n    return { command, status: \"error\", message: errorMessage(err) };\n  }\n}\n\n/** A hook or a git status names files by any extension; a walk keeps the documents. */\nfunction isDocument(label: string): boolean {\n  return supportedExtensions().includes(extname(label).toLowerCase());\n}\n\n/** Every domain walks the same collections, so the run shares one walk per target set. */\nexport function runFamilyCheck(opts: FamilyCheckOptions): Promise<FamilyCheckRun> {\n  return withSharedWalks(() => checkUnshared(opts));\n}\n\nasync function checkUnshared(opts: FamilyCheckOptions): Promise<FamilyCheckRun> {\n  const cwd = resolve(opts.cwd ?? process.cwd());\n  const onNotice = opts.onNotice ?? ((): void => undefined);\n  const family = await loadFamily(cwd, opts.configPath);\n  if (family.collections.length === 0) throw nothingSetUpError();\n  const isMember = (label: string): boolean => collectionsOf(family, cwd, label).length > 0;\n\n  let files: string[];\n  let domains: Domain[];\n  let inputs: string[];\n  switch (opts.scope.kind) {\n    case \"all\":\n      files = await listMembers(family, cwd);\n      inputs = [];\n      domains = [...DOMAINS];\n      break;\n    case \"paths\": {\n      const { files: named } = await resolveTargetSet({\n        inputs: opts.scope.paths,\n        cwd,\n        ...(opts.allowMissing === true ? { allowEmpty: true } : {}),\n      });\n      const outside = named.filter((label) => !isMember(label));\n      if (outside.length > 0) {\n        onNotice(`Skipped ${plural(outside.length, \"file\")} outside every collection: ${outside.join(\", \")}`);\n      }\n      // A collection globbed wide holds assets too; only documents are checked.\n      files = named.filter((label) => isMember(label) && isDocument(label));\n      inputs = files;\n      domains = files.length > 0 ? [\"meta\", \"cite\", \"lint\", \"docevals\"] : [];\n      break;\n    }\n    case \"changed\": {\n      const changed = await changedFiles(cwd);\n      if (!changed.dirty) return { status: \"pass\", files: [], checks: [] };\n      const memberDocuments = (paths: string[]): string[] =>\n        paths.map((path) => labelFrom(cwd, path)).filter((l) => isDocument(l) && isMember(l));\n      files = memberDocuments(changed.files);\n      inputs = files;\n      // term reads only collection documents, so a session that changed or\n      // removed none of them leaves the glossary as it was. graph never runs\n      // here: it is the slowest set-wide check, and its findings span pages\n      // rather than the one an agent just wrote, so a bare run (CI) owns it.\n      const pageChanged = files.length > 0 || memberDocuments(changed.removed).length > 0;\n      domains = [\n        ...(files.length > 0 ? ([\"meta\", \"lint\", \"docevals\"] as const) : []),\n        \"cite\",\n        ...(pageChanged ? ([\"term\"] as const) : []),\n      ];\n      break;\n    }\n  }\n\n  const checks: CheckOutcome[] = [];\n  for (const domain of domains) {\n    // The set-wide checks run bare, over every collection, whatever the scope.\n    const setWide = domain === \"term\" || domain === \"graph\" || (domain === \"cite\" && opts.scope.kind !== \"paths\");\n    checks.push(await outcome(domain, { family, cwd, inputs: setWide ? [] : inputs, onNotice }));\n  }\n  if (opts.scope.kind === \"all\" && checks.every((c) => c.status === \"skipped\")) {\n    throw nothingSetUpError();\n  }\n  return { status: checks.some((c) => c.status === \"fail\") ? \"fail\" : \"pass\", files, checks };\n}\n\n/** The exit code a run by hand ends with: 2 when a check could not run. */\nexport function exitCodeFor(run: FamilyCheckRun): 0 | 1 | 2 {\n  if (run.checks.some((c) => c.status === \"error\")) return 2;\n  return run.status === \"fail\" ? 1 : 0;\n}\n\nfunction isRan(check: CheckOutcome): check is RanCheck {\n  return check.status === \"pass\" || check.status === \"fail\";\n}\n\n/** The first line of a message, for a one-line context. */\nfunction firstLine(message: string): string {\n  return message.split(\"\\n\", 1)[0] ?? \"\";\n}\n\n/** What an agent is handed when a hook blocks: the failing checks' reports, nothing else. */\nfunction renderFailures(run: FamilyCheckRun): string {\n  return run.checks\n    .filter((c): c is RanCheck => c.status === \"fail\")\n    .map((c) => `${c.command}\\n${c.render(\"pretty\", false)}`)\n    .join(\"\\n\\n\");\n}\n\nexport function renderPretty(run: FamilyCheckRun, color: boolean): string {\n  const blocks: string[] = [];\n  for (const check of run.checks) {\n    if (isRan(check)) blocks.push(`${check.command}\\n${check.render(\"pretty\", color)}`);\n  }\n  const notRun = run.checks.filter((c): c is NotRunCheck => !isRan(c));\n  if (notRun.length > 0) {\n    const width = Math.max(...notRun.map((c) => c.command.length)) + 3;\n    blocks.push(\n      notRun\n        .map((c) => `${c.status.padEnd(9)}${c.command.padEnd(width)}${firstLine(c.message)}`)\n        .join(\"\\n\"),\n    );\n  }\n  const count = (status: CheckOutcome[\"status\"]): number =>\n    run.checks.filter((c) => c.status === status).length;\n  const errors = count(\"error\");\n  blocks.push(\n    `${plural(run.checks.length, \"check\")} over ${plural(run.files.length, \"file\")}: ` +\n      `${String(count(\"fail\"))} failed, ${String(count(\"skipped\"))} skipped` +\n      (errors > 0 ? `, ${String(errors)} could not run` : \"\"),\n  );\n  return blocks.join(\"\\n\\n\");\n}\n\n/** A check's JSON entry: its own report, or why there is none. */\nfunction jsonEntry(c: CheckOutcome): object {\n  if (!isRan(c)) return { command: c.command, status: c.status, message: c.message };\n  try {\n    return { command: c.command, status: c.status, report: JSON.parse(c.render(\"json\", false)) as unknown };\n  } catch {\n    // One reporter's bad output must not take the other checks' reports with it.\n    // `error` on purpose, whatever the run's own status: with no report to\n    // embed, a `pass` or `fail` here would be a verdict nobody can inspect.\n    // The reference documents `error` for this case too.\n    return { command: c.command, status: \"error\", message: `${c.command} -f json printed output that is not JSON` };\n  }\n}\n\nexport function renderJson(run: FamilyCheckRun): string {\n  return JSON.stringify(\n    {\n      status: run.status,\n      files: run.files,\n      checks: run.checks.map(jsonEntry),\n    },\n    null,\n    2,\n  );\n}\n\nexport function renderGithub(run: FamilyCheckRun): string {\n  return run.checks\n    .filter(isRan)\n    .map((c) => c.render(\"github\", false))\n    .filter((text) => text.length > 0)\n    .join(\"\\n\");\n}\n\nexport function render(run: FamilyCheckRun, format: CheckFormat, color: boolean): string {\n  return format === \"json\" ? renderJson(run) : format === \"github\" ? renderGithub(run) : renderPretty(run, color);\n}\n\n/** What a hook command ends with: its exit code, and what it prints where. */\nexport interface HookReply {\n  exitCode: 0 | 2;\n  stdout?: string;\n  stderr?: string;\n}\n\n/** The PostToolUse tools whose edit `check` answers. */\nexport const EDIT_TOOLS: readonly string[] = [\"Edit\", \"Write\", \"MultiEdit\", \"NotebookEdit\"];\n\n/**\n * The hook protocol's answer to a run. Never exit 2 for a check that could\n * not run: 2 means \"block\" to Claude Code, and an operational error is not\n * the agent's to fix.\n */\nexport function hookReply(run: FamilyCheckRun, envelope: Envelope): HookReply {\n  const failed = run.status === \"fail\";\n  if (envelope.event === \"PostToolUse\") {\n    const files = run.files.join(\", \");\n    if (failed) {\n      return {\n        exitCode: 2,\n        stderr: `manni found errors in ${files}. Fix them before you continue.\\n\\n${renderFailures(run)}\\n`,\n      };\n    }\n    const errors = run.checks.filter((c): c is NotRunCheck => c.status === \"error\");\n    if (errors.length === 0) return { exitCode: 0 };\n    const additionalContext = errors\n      .map((c) => `manni ${c.command} could not check ${files}: ${firstLine(c.message)}`)\n      .join(\"\\n\");\n    return {\n      exitCode: 0,\n      stdout: `${JSON.stringify({ hookSpecificOutput: { hookEventName: \"PostToolUse\", additionalContext } })}\\n`,\n    };\n  }\n  if (envelope.event === \"Stop\") return turnReply(run, undefined, envelope);\n  return { exitCode: 0 };\n}\n\n/** What tracevals found in the turn a Stop or SubagentStop ended, for the reply. */\nexport interface TurnVerdict {\n  /** Rules broken with a confident verdict: how many, the report, the trace judged. */\n  broken?: { rules: number; report: string; trace: string };\n  /** A skip not yet said this session. */\n  skipMessage?: string;\n}\n\n/**\n * The reply to a Stop or a SubagentStop: 0078's file checks first, then the\n * turn. One block carries both reasons; after the repair pass, one message\n * carries both sentences. Always exit 0, as 0078's Stop is.\n */\nexport function turnReply(\n  run: FamilyCheckRun | undefined,\n  turn: TurnVerdict | undefined,\n  envelope: Envelope,\n): HookReply {\n  const reasons: string[] = [];\n  const messages: string[] = [];\n  if (run?.status === \"fail\") {\n    if (envelope.stopHookActive) {\n      messages.push(\"manni still reports errors after one repair pass. Run manni check to see them.\");\n    } else {\n      reasons.push(`manni found errors in the files you changed. Fix them, then finish.\\n\\n${renderFailures(run)}`);\n    }\n  }\n  if (turn?.broken !== undefined) {\n    const { rules, report, trace } = turn.broken;\n    if (envelope.stopHookActive) {\n      messages.push(\n        `tracevals still finds broken rules after one repair pass. Run manni tracevals check ${trace} to see them.`,\n      );\n    } else {\n      reasons.push(\n        `This turn broke ${plural(rules, \"rule\")} from the files and requests that governed it. ` +\n          `Fix the work, or say why the rule does not apply here, then finish.\\n\\n${report}`,\n      );\n    }\n  }\n  if (turn?.skipMessage !== undefined) messages.push(turn.skipMessage);\n  if (reasons.length === 0 && messages.length === 0) return { exitCode: 0 };\n  const reply = {\n    ...(reasons.length > 0 ? { decision: \"block\", reason: reasons.join(\"\\n\\n\") } : {}),\n    ...(messages.length > 0 ? { systemMessage: messages.join(\" \") } : {}),\n  };\n  return { exitCode: 0, stdout: `${JSON.stringify(reply)}\\n` };\n}\n\n/** Test seams `checkTurn` takes; production builds each from config. */\nexport type TurnSeams = Partial<Pick<TurnCheckInput, \"judge\" | \"extractor\" | \"localModels\" | \"env\">>;\n\n/**\n * Judge the turn a Stop or SubagentStop ended, with every gate of proposal\n * 0079. Silent (`undefined`) when tracevals is not in play, the turn is clean\n * or only needs review, a skip was already said this session, or the run\n * could not happen: an operational failure is not the agent's to fix.\n */\nexport async function runTurnCheck(\n  envelope: Envelope,\n  cwd: string,\n  seams: TurnSeams = {},\n): Promise<TurnVerdict | undefined> {\n  const subagent = envelope.event === \"SubagentStop\";\n  const judged = subagent ? envelope.agentTranscriptPath : envelope.transcriptPath;\n  if (judged === undefined) return undefined;\n  const trace = resolve(cwd, judged);\n  const sessionId = envelope.sessionId ?? basename(trace, \".jsonl\");\n  let result: TurnCheckResult;\n  let renderTurn: (typeof import(\"../../tracevals/reporters/conformance.js\"))[\"renderCheck\"];\n  try {\n    // Loaded here, as every domain is, so a run that never judges a turn never\n    // loads tracevals.\n    const [{ checkTurn }, reporters] = await Promise.all([\n      import(\"../../tracevals/commands/check.js\"),\n      import(\"../../tracevals/reporters/conformance.js\"),\n    ]);\n    renderTurn = reporters.renderCheck;\n    result = await checkTurn({\n      transcriptPath: resolve(cwd, envelope.transcriptPath ?? judged),\n      ...(subagent ? { agentTranscriptPath: trace } : {}),\n      ...(subagent && envelope.agentId !== undefined ? { agentId: envelope.agentId } : {}),\n      ...(subagent && envelope.agentType !== undefined ? { agentType: envelope.agentType } : {}),\n      ...(envelope.lastAssistantMessage !== undefined\n        ? { lastAssistantMessage: envelope.lastAssistantMessage }\n        : {}),\n      sessionId,\n      cwd,\n      inLoop: true,\n      ...seams,\n    });\n  } catch (err) {\n    // An operational failure is not the agent's to fix, so it stays silent, as\n    // 0078's Stop failures do. Anything else is a bug: say so on stderr, which\n    // a hook that exits 0 sends to the debug log, and still never block.\n    if (!(err instanceof ToolError)) warn(`the turn check failed unexpectedly: ${errorMessage(err)}`);\n    return undefined;\n  }\n  const { skipped } = result;\n  if (skipped?.message !== undefined) {\n    return sayOnce(cwd, sessionId, skipped.gate) ? { skipMessage: skipped.message } : undefined;\n  }\n  if (result.exitCode !== 1 || result.report === undefined) return undefined;\n  return {\n    broken: {\n      rules: result.report.summary.fail,\n      report: renderTurn(result.report, { color: false }),\n      trace: judged,\n    },\n  };\n}\n\n/** The reply when the run itself could not happen, under a hook. */\nexport function hookFailure(message: string, envelope: Envelope, file: string | undefined): HookReply {\n  if (envelope.event !== \"PostToolUse\" || file === undefined) return { exitCode: 0 };\n  const additionalContext = `manni check could not check ${file}: ${firstLine(message)}`;\n  return {\n    exitCode: 0,\n    stdout: `${JSON.stringify({ hookSpecificOutput: { hookEventName: \"PostToolUse\", additionalContext } })}\\n`,\n  };\n}\n","/**\n * The files a session changed: the git working tree against `HEAD`.\n *\n * Modified, added, renamed (by the new name) and untracked files, staged or\n * not. A deleted file, or a renamed one's old name, is named apart, since\n * there is nothing left to check. Paths come back absolute, resolved from\n * `cwd`: porcelain status names them from the repository root whatever\n * directory git ran in.\n */\nimport { execFile } from \"node:child_process\";\nimport { posix, resolve } from \"node:path\";\nimport { promisify } from \"node:util\";\n\nconst run = promisify(execFile);\n\nasync function git(args: string[], cwd: string): Promise<string> {\n  // shell:false: nothing here is ever parsed as shell syntax.\n  const { stdout } = await run(\"git\", args, {\n    cwd,\n    shell: false,\n    windowsHide: true,\n    maxBuffer: 64 * 1024 * 1024,\n  });\n  return stdout;\n}\n\n/** Parse `git status --porcelain=v1 -z` into repository-relative paths. */\nexport function parsePorcelain(output: string): { files: string[]; removed: string[] } {\n  const fields = output.split(\"\\0\");\n  const files: string[] = [];\n  const removed: string[] = [];\n  for (let i = 0; i < fields.length; i++) {\n    const entry = fields[i] ?? \"\";\n    if (entry.length < 4) continue;\n    const xy = entry.slice(0, 2);\n    const path = entry.slice(3);\n    // A rename or copy is followed by its old name, which is not a change to\n    // check. A rename's old name is gone; a copy's is still there.\n    if (xy.includes(\"R\") || xy.includes(\"C\")) {\n      i++;\n      if (xy.includes(\"R\")) removed.push(fields[i] ?? \"\");\n    }\n    // `RD`, a staged rename then deleted in the tree, removes both names:\n    // the old one above and the new one here. Two files, not one twice.\n    if (xy.includes(\"D\")) removed.push(path);\n    else files.push(path);\n  }\n  return { files, removed };\n}\n\nexport interface ChangedTree {\n  /** The changed files left to check, absolute. */\n  files: string[];\n  /** The files the tree no longer has: deleted, or renamed away. Absolute. */\n  removed: string[];\n  /**\n   * Whether the tree differs from `HEAD` at all. A deletion alone leaves no\n   * file to check, but it can still break a citation to what it removed.\n   */\n  dirty: boolean;\n}\n\nexport async function changedFiles(cwd: string): Promise<ChangedTree> {\n  // Rebased through `cwd`'s own prefix rather than resolved from the\n  // top-level git prints: on Windows that is the long spelling of a path the\n  // caller may hold in its 8.3 short form, and the two would never compare.\n  const prefix = (await git([\"rev-parse\", \"--show-prefix\"], cwd)).trim();\n  const status = await git(\n    [\"status\", \"--porcelain=v1\", \"-z\", \"--untracked-files=all\"],\n    cwd,\n  );\n  const { files, removed } = parsePorcelain(status);\n  const absolute = (path: string): string => resolve(cwd, posix.relative(prefix, path));\n  return { files: files.map(absolute), removed: removed.map(absolute), dirty: status.length > 0 };\n}\n","/**\n * What a hook has already told the user this session (proposal 0079: \"A skip\n * message is said once per session\").\n *\n * Each hook is a process of its own, and parallel subagents end in parallel\n * SubagentStop hooks, so the memory is one marker file per message, created\n * exclusively. The process whose create succeeds is the one that says it, so\n * no two hooks can both read \"not said yet\".\n */\nimport { mkdirSync, writeFileSync } from \"node:fs\";\nimport { dirname, join } from \"node:path\";\nimport { DEFAULT_CAPTURE_DIR } from \"../../tracevals/capture/types.js\";\nimport { idHash } from \"../../tracevals/rules/ledger.js\";\n\n/**\n * `<project>/.manni/tracevals/sessions/<session hash>.<key>.said`. The session\n * id is hashed, so nothing in it can climb out of the directory and two ids\n * never share a marker. The key is a gate name, which is already safe.\n */\nexport function saidPath(projectDir: string, sessionId: string, key: string): string {\n  return join(projectDir, DEFAULT_CAPTURE_DIR, `${idHash(sessionId)}.${key}.said`);\n}\n\n/**\n * True the first time `key` comes up in a session, and records it. A marker\n * that cannot be written says the message rather than lose it.\n */\nexport function sayOnce(projectDir: string, sessionId: string, key: string): boolean {\n  const path = saidPath(projectDir, sessionId, key);\n  try {\n    mkdirSync(dirname(path), { recursive: true });\n    writeFileSync(path, \"\", { flag: \"wx\" });\n    return true;\n  } catch (err) {\n    // EEXIST: another hook said it first. Anything else is an unwritable\n    // project, which repeats the message each stop rather than lose it.\n    return (err as NodeJS.ErrnoException).code !== \"EEXIST\";\n  }\n}\n","/**\n * `manni status`: what is set up here, and so what `manni check` runs.\n *\n * It reads the same table `check` does (`in-play.ts`), counting what the\n * content declares where a domain is in play by declaration: the pages that\n * name their own `$schema`, carry citations or resolve evals, and the terms.\n * It checks nothing, so it exits 0 whatever it finds.\n */\nimport { appendFileSync, existsSync, readFileSync } from \"node:fs\";\nimport { extname, resolve } from \"node:path\";\nimport pkg from \"../../../package.json\" with { type: \"json\" };\nimport { errorMessage } from \"../../shared/errors.js\";\nimport { extractorForExtension } from \"../../meta/extractors/index.js\";\nimport type { HostStatus } from \"../../tracevals/rules/host.js\";\nimport type { Envelope } from \"../core/envelope.js\";\nimport {\n  COMMANDS,\n  DOMAINS,\n  NOT_CHECKED,\n  NOT_SET_UP,\n  collectionsOf,\n  listMembers,\n  loadFamily,\n  plural,\n  type Domain,\n  type Family,\n} from \"../core/in-play.js\";\nimport { withSharedWalks } from \"../../meta/core/load-files.js\";\n\nexport const STATUS_FORMATS = [\"pretty\", \"json\"] as const;\nexport type StatusFormat = (typeof STATUS_FORMATS)[number];\n\nexport type DomainState = \"in-play\" | \"not-set-up\" | \"not-checked\" | \"unknown\";\n\nexport interface ModelRole {\n  provider: string;\n  model: string;\n}\n\nexport interface DomainRow {\n  name: string;\n  status: DomainState;\n  reason: string;\n  /** tracevals in play: the model judging inside a hook, and the one extracting rules. */\n  models?: { hook: ModelRole; extraction: ModelRole };\n  /** tracevals in play with a model host running: each model it holds. */\n  host?: HostStatus[\"models\"];\n}\n\nexport interface StatusReport {\n  version: string;\n  /** The config file, as discovery found it or as it was typed. */\n  config: string;\n  collections: { name: string; files: number }[];\n  domains: DomainRow[];\n}\n\nexport interface StatusOptions {\n  cwd?: string;\n  configPath?: string;\n  /** Test seam: the running model host. 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[]).map(\n      (m) =>\n        `${\"\".padEnd(11)}${\"model host\".padEnd(width)}${m.model} loaded, ${plural(m.sessions, \"session\")}, ` +\n        `idle ${String(Math.floor(m.idleMs / 60_000))}m`,\n    ),\n  ]);\n  return [head, \"\", ...rows].join(\"\\n\");\n}\n\n/**\n * The plugin skill the briefing points an agent at, as `<plugin>:<skill>`.\n * `test/plugin.test.ts` checks both halves against `plugin/manni`.\n */\nexport const FIX_SKILL = \"manni:fix\";\n\n/** The set-wide checks a stop runs when a collection document changed, as the briefing names them. */\nconst PAGE_WIDE: ReadonlyArray<readonly [Domain, string]> = [[\"term\", \"the glossary\"]];\n\n/** `a`, `a or b`, `a, b or c`: a list in prose, joined by `conjunction`. */\nfunction prose(items: readonly string[], conjunction: string): string {\n  return items.length <= 1\n    ? 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package/dist/{cli-HUIMNJT6.js → cli-IRHPPUFJ.js}

@@ -2,7 +2,7 @@
 import {
   renderCheck,
   runCheck
-} from "./chunk-52PDIZKV.js";
+} from "./chunk-ECVQNGTH.js";
 import {
   EXPORT_TARGETS,
   SEARCH_MODES,
@@ -19,38 +19,34 @@ import {
   runSearch,
   runStats,
   runTraverse
-} from "./chunk-EL2BZTDL.js";
+} from "./chunk-LXJEAV2V.js";
 import {
   DEFAULT_EXTENSIONS,
   STDIN,
   assertInputFormat,
   runBuild
-} from "./chunk-K3U5F2QT.js";
-import "./chunk-BOIF2XGG.js";
+} from "./chunk-6VDBP5UV.js";
+import "./chunk-XXDXIIQ4.js";
 import {
   ALL_FILL_FIELDS,
   CONFIG_SECTION,
   DEFAULT_CONFIG_FILENAME,
   GraphError
-} from "./chunk-B7XUEQF3.js";
-import "./chunk-ELZ2IIOF.js";
+} from "./chunk-6KKZXB2O.js";
+import "./chunk-6URSCTTX.js";
 import "./chunk-TIUTIOFB.js";
 import "./chunk-YGFIQ6Y5.js";
-import "./chunk-TU2WUBVZ.js";
-import "./chunk-TVIX653Q.js";
-import "./chunk-QCBICNKC.js";
-import "./chunk-3YHAYXBC.js";
+import "./chunk-ZKCNPKUO.js";
+import "./chunk-CR3HZERW.js";
 import {
   collect,
   configOption,
   readStdin,
-  splitList
-} from "./chunk-NAZRLJAK.js";
-import {
+  splitList,
   writeTextAtomic
-} from "./chunk-HVFR66GQ.js";
-import "./chunk-TCC737IS.js";
-import "./chunk-527HHQPS.js";
+} from "./chunk-5UB47BEV.js";
+import "./chunk-5VWDIWOH.js";
+import "./chunk-MSMB6XOS.js";
 import {
   fail
 } from "./chunk-YEUYKR62.js";
@@ -58,13 +54,16 @@ import {
   shouldColor
 } from "./chunk-RNVYGWIC.js";
 import "./chunk-MNH7QO4Z.js";
+import "./chunk-XKBEHKWO.js";
 import {
-  LOCAL_FLAG_HELP,
   warn
-} from "./chunk-Q35YIDBV.js";
+} from "./chunk-HX44GB4Z.js";
+import {
+  LOCAL_FLAG_HELP
+} from "./chunk-QCHVR4ZM.js";
 import {
   package_default
-} from "./chunk-6XTQDFGP.js";
+} from "./chunk-YSCZL4U5.js";
 import "./chunk-OWBRDNRZ.js";
 import {
   errorMessage
@@ -628,4 +627,4 @@ export {
   buildProgram,
   colorFor
 };
-//# sourceMappingURL=cli-HUIMNJT6.js.map
+//# sourceMappingURL=cli-IRHPPUFJ.js.map

package/dist/{cli-HUIMNJT6.js.map → cli-IRHPPUFJ.js.map}

@@ -1 +1 @@
-{"version":3,"sources":["../src/graph/cli.ts","../src/graph/reporters/index.ts","../src/graph/commands/init.ts"],"sourcesContent":["/**\n * The graph program. Named `graph` because that is where it is mounted\n * (`manni graph …`); `src/cli.ts` adds it to the umbrella and runs it.\n *\n * Grammar per proposals 0034 and 0051 §2: the domain owns verbs and has no\n * default subcommand, `-f` means the output format everywhere and is checked\n * against the verb's list, and a list reaches a flag by exactly one\n * separator. The plumbing is the family's: `fail()` from `src/shared/run.ts`,\n * `warn()` from `src/shared/warn.ts`, and `--no-color` from\n * `src/shared/color.ts`.\n */\nimport { Command } from \"commander\";\nimport pkg from \"../../package.json\" with { type: \"json\" };\nimport {\n  collect,\n  configOption,\n  readStdin,\n  splitList,\n} from \"../shared/cli-options.js\";\nimport { shouldColor } from \"../shared/color.js\";\nimport { fail } from \"../shared/run.js\";\nimport { warn } from \"../shared/warn.js\";\nimport { GraphError } from \"./types.js\";\nimport { LOCAL_FLAG_HELP } from \"../shared/providers.js\";\nimport { ALL_FILL_FIELDS, type FillField } from \"./core/config.js\";\nimport {\n  assertInputFormat,\n  DEFAULT_EXTENSIONS,\n  STDIN,\n} from \"./core/discover.js\";\nimport {\n  CHECK_FORMATS,\n  CHECK_FORMAT_LIST,\n  GRAPH_FORMATS,\n  GRAPH_FORMAT_LIST,\n  type CheckFormat,\n  type GraphFormat,\n} from \"./reporters/index.js\";\nimport { runBuild } from \"./commands/build.js\";\nimport { renderCheck, runCheck } from \"./commands/check.js\";\nimport {\n  EXPORT_TARGETS,\n  runExport,\n  type ExportFormat,\n} from \"./commands/export.js\";\nimport { renderQuery, runQuery } from \"./commands/query.js\";\nimport { renderFill, runFill } from \"./commands/fill.js\";\nimport { runInit } from \"./commands/init.js\";\nimport { renderEmbed, runEmbed } from \"./commands/embed.js\";\nimport {\n  renderSearch,\n  runSearch,\n  SEARCH_MODES,\n  type SearchMode,\n} from \"./commands/search.js\";\nimport { renderStats, runStats } from \"./commands/stats.js\";\nimport { renderTraverse, runTraverse } from \"./commands/traverse.js\";\n\n/**\n * Whether `command`'s output gets colour: this domain's `--no-color` and\n * `NO_COLOR` turn it off, and otherwise only a TTY turns it on\n * (`shouldColor`). `isTTY` is passed uncoerced: Node leaves it undefined off\n * a terminal, never false, and `shouldColor` reads a missing one as \"not a\n * terminal\".\n *\n * Exported because this is where the decision is testable — a spawned bin is\n * never a TTY. graph's reporters print no colour yet; when one does, it takes\n * the boolean from here rather than consulting the environment itself.\n */\nexport function colorFor(\n  command: Command,\n  isTTY: boolean | undefined,\n  env?: NodeJS.ProcessEnv,\n): boolean {\n  // commander maps --no-color to opts.color === false, on the command that\n  // declares it.\n  const noColor = colorOwner(command).opts().color === false;\n  return shouldColor({ noColor, isTTY, env });\n}\n\n/**\n * The nearest command, this one or an ancestor, that declares `--no-color`:\n * the `graph` program, wherever it is mounted. Not the root: under the umbrella\n * that is `manni`, which has no `--no-color` of its own.\n */\nfunction colorOwner(command: Command): Command {\n  for (let c: Command | null = command; c !== null; c = c.parent) {\n    if (c.options.some((o) => o.long === \"--no-color\")) return c;\n  }\n  return command;\n}\n\nexport function buildProgram(): Command {\nconst program = new Command();\n\nprogram\n  .name(\"graph\")\n  .description(\n    \"Deterministic knowledge graphs derived from documentation frontmatter and formatting.\",\n  )\n  .version(pkg.version)\n  .option(\"--no-color\", \"disable colored output\")\n  // A pointer, not the whole help screen: the message that precedes it\n  // already names the offending flag.\n  .showHelpAfterError(\"(add --help for usage)\")\n  // MUST come before the `.command()` calls below. `copyInheritedSettings`\n  // copies `_exitCallback` by value at subcommand-creation time, so an\n  // `exitOverride()` installed afterwards leaves every subcommand still\n  // calling `process.exit(1)` — which reports a usage error as a finding.\n  .exitOverride();\n\n/**\n * Parse a numeric CLI option, refusing what the config schema refuses.\n *\n * `Number.parseFloat`/`parseInt` return NaN for `abc` and silently accept\n * out-of-range values, and NaN then disables whatever gate it feeds — a cost\n * cap that never fires, a confidence gate that writes everything, a `--top`\n * that asks for a negative number of rows. The documented precedence is\n * config → Ajv → CLI override, so the override has to be held to the same range.\n */\nfunction numericOption(\n  flag: string,\n  { min, max, integer }: { min: number; max?: number; integer?: boolean },\n) {\n  return (raw: string): number => {\n    const value = Number.parseFloat(raw);\n    if (!Number.isFinite(value)) {\n      throw new GraphError(`${flag} expects a number, got \"${raw}\".`);\n    }\n    if (integer && !Number.isInteger(value)) {\n      throw new GraphError(`${flag} expects a whole number, got ${value}.`);\n    }\n    if (value < min || (max !== undefined && value > max)) {\n      const range = max === undefined ? `>= ${min}` : `${min}..${max}`;\n      throw new GraphError(`${flag} must be ${range}, got ${value}.`);\n    }\n    return value;\n  };\n}\n\n/** A count: a whole number, at least `min` (1 unless the flag allows zero). */\nfunction countOption(flag: string, min = 1) {\n  return numericOption(flag, { min, integer: true });\n}\n\n/**\n * Hold a CLI override to the same list its config key is held to.\n *\n * `fill.provider` is Ajv-validated against the schema enum; the `--provider`\n * override was an arbitrary string cast straight to `ProviderName`, so the\n * documented config → Ajv → CLI precedence had a hole at the last step.\n */\nfunction enumOption<T extends string>(flag: string, allowed: readonly T[]) {\n  return (raw: string): T => {\n    if (!(allowed as readonly string[]).includes(raw)) {\n      throw new GraphError(\n        `${flag} must be one of ${allowed.join(\" | \")}, got \"${raw}\".`,\n      );\n    }\n    return raw as T;\n  };\n}\n\n/**\n * A flag whose value is one of a named set, refused in the family's words:\n * `Unknown --format \"xml\". Use pretty | json.` The check runs while the\n * options are parsed, so a typo costs a message rather than a graph load.\n */\nfunction choiceOption<T extends string>(flag: string, allowed: readonly T[]) {\n  return (raw: string): T => {\n    if (!(allowed as readonly string[]).includes(raw)) {\n      throw new GraphError(`Unknown ${flag} \"${raw}\". Use ${allowed.join(\" | \")}.`);\n    }\n    return raw as T;\n  };\n}\n\n/** `-f, --format`: every verb's list is `pretty | json` (0051 §2). */\nconst formatOption = choiceOption(\"--format\", GRAPH_FORMATS);\n\n/** `check`'s own, which adds `github` — the CI gate's annotation format. */\nconst checkFormatOption = choiceOption(\"--format\", CHECK_FORMATS);\n\n/**\n * `--fields <list>`: comma-separated and given once, never repeatable — one\n * separator per list (proposal 0034), and the spelling `meta fill --fields`\n * already uses. Each value is held to the same list `fill.fields` is.\n */\nconst fieldsOption = (raw: string): FillField[] =>\n  splitList(raw).map((value) => enumOption(\"--fields\", ALL_FILL_FIELDS)(value));\n\n/**\n * The document-set surface the verbs that read documents share (proposals\n * 0041 and 0051 §1): positional `[paths...]` with `-` for stdin,\n * `--collection` and `--exclude` (each one value per occurrence), `--as`,\n * `--ext` (comma-separated, given once), `--allow-empty`, and\n * `-c`/`--no-config`. Declared once so the verbs cannot drift apart on a name\n * or a description, and worded as `meta` and `lint` word them.\n */\nfunction documentInputs(command: Command, verb: string): Command {\n  return command\n    .argument(\n      \"[paths...]\",\n      `files, directories, or globs to ${verb} (use - for stdin)`,\n    )\n    .option(\n      \"--collection <name>\",\n      \"Configured collection to read (repeatable)\",\n      collect,\n      [],\n    )\n    .option(\"--exclude <glob>\", \"Glob to exclude (repeatable)\", collect, [])\n    .option(\n      \"--as <format>\",\n      \"Parse every input as asciidoc, html, markdown, mdx, rst or xml, whatever its extension. Required with -.\",\n    )\n    .option(\n      \"--ext <list>\",\n      \"comma-separated extensions for directory walks\",\n      DEFAULT_EXTENSIONS.join(\",\"),\n    )\n    .option(\"--allow-empty\", \"treat zero matched files as success\")\n    .option(\"-c, --config <path>\", \"Path to manni.config.yaml\")\n    .option(\"--no-config\", \"Ignore any discovered config file\");\n}\n\n/** The input flags as commander hands them over. */\ninterface InputFlags {\n  as?: string;\n  ext: string;\n  allowEmpty?: boolean;\n}\n\n/**\n * The input flags for a core, and stdin when `paths` holds `-`. `--as` is\n * checked first, so `-` without it is refused before anything waits on stdin.\n */\nasync function inputOptions(\n  paths: string[],\n  opts: InputFlags,\n): Promise<{\n  as?: string;\n  ext: string[];\n  allowEmpty?: boolean;\n  stdinContent?: string;\n}> {\n  assertInputFormat(paths, opts.as);\n  return {\n    ...(opts.as === undefined ? {} : { as: opts.as }),\n    ext: splitList(opts.ext),\n    ...(opts.allowEmpty === true ? { allowEmpty: true } : {}),\n    ...(paths.includes(STDIN) ? { stdinContent: await readStdin() } : {}),\n  };\n}\n\n/**\n * `-c`/`--no-config` for a verb that reads a built graph rather than a\n * document set. They share one commander attribute, which `configOption`\n * splits.\n */\nfunction configInputs(command: Command): Command {\n  return command\n    .option(\"-c, --config <path>\", \"Path to manni.config.yaml\")\n    .option(\"--no-config\", \"Ignore any discovered config file\");\n}\n\n/**\n * `opts` minus the one attribute `-c` and `--no-config` share. `documentOptions`\n * restates it as the two fields a core reads, and spreading the raw value over\n * them would put commander's `false` back where a path belongs.\n */\nfunction rest<T extends { config?: string | boolean }>(\n  opts: T,\n): Omit<T, \"config\"> {\n  const { config, ...others } = opts;\n  return others;\n}\n\n/** The shared options as the command cores take them. */\nfunction documentOptions(opts: {\n  collection?: string[];\n  exclude?: string[];\n  config?: string | boolean;\n}): {\n  config?: string;\n  noConfig?: boolean;\n  collection?: string[];\n  exclude?: string[];\n} {\n  const { configPath, noConfig } = configOption(opts.config);\n  return {\n    ...(configPath === undefined ? {} : { config: configPath }),\n    ...(noConfig === true ? { noConfig } : {}),\n    ...(opts.collection === undefined ? {} : { collection: opts.collection }),\n    ...(opts.exclude === undefined ? {} : { exclude: opts.exclude }),\n  };\n}\n\nprogram\n  .command(\"init\")\n  .description(\"Add a starter `graph:` section to manni.config.yaml in the current directory\")\n  .action(async () => {\n    try {\n      console.log(`Created ${await runInit()}`);\n    } catch (e) {\n      fail(e);\n    }\n  });\n\ndocumentInputs(\n  program\n    .command(\"build\")\n    .description(\"Derive the knowledge graph and write deterministic Turtle\"),\n  \"build\",\n)\n  .option(\"-o, --out <path>\", \"Output .ttl path (default: config out)\")\n  .action(async (paths: string[], opts: InputFlags & {\n    config?: string | boolean;\n    collection?: string[];\n    exclude?: string[];\n    out?: string;\n  }) => {\n    try {\n      const result = await runBuild({\n        paths,\n        ...documentOptions(opts),\n        ...(await inputOptions(paths, opts)),\n        out: opts.out,\n      });\n      // Warnings go to stderr so stdout stays the machine-readable summary;\n      // a degraded build is still a successful one, so the exit code is 0.\n      for (const warning of result.warnings) warn(warning);\n      console.log(\n        `Wrote ${result.outPath} (${result.docs} docs, ${result.quads} triples)`,\n      );\n    } catch (e) {\n      fail(e);\n    }\n  });\n\nconfigInputs(\n  program\n    .command(\"check\")\n    .description(\n      \"Validate the built graph against the bundled SHACL shapes (errors exit 1)\",\n    ),\n)\n  .option(\"-g, --graph <path>\", \"Graph .ttl path (default: config out)\")\n  // One path per occurrence, never split on commas: a path may hold one.\n  .option(\n    \"--shapes <path>\",\n    \"Shapes .ttl file; repeatable (default: config check.shapes, then bundled)\",\n    collect,\n    [],\n  )\n  .option(\n    \"-f, --format <format>\",\n    `Output: ${CHECK_FORMAT_LIST}`,\n    checkFormatOption,\n    \"pretty\",\n  )\n  .action(\n    async (opts: {\n      config?: string | boolean;\n      graph?: string;\n      shapes: string[];\n      format: CheckFormat;\n    }) => {\n      try {\n        const report = await runCheck({ ...rest(opts), ...documentOptions(opts) });\n        console.log(renderCheck(report, opts.format));\n        process.exitCode = report.exitCode;\n      } catch (e) {\n        fail(e);\n      }\n    },\n  );\n\ndocumentInputs(\n  program\n    .command(\"fill\")\n    .description(\n      \"Propose `graph:` frontmatter fields with an LLM, gated by confidence, and write them back\",\n    ),\n  \"fill\",\n)\n  .option(\n    \"-f, --format <format>\",\n    `Output: ${GRAPH_FORMAT_LIST}`,\n    formatOption,\n    \"pretty\",\n  )\n  .option(\"--dry-run\", \"Report proposals without writing files\")\n  .option(\"--force\", \"Overwrite human-set graph fields\")\n  .option(\"--no-cache\", \"Bypass the proposal cache\")\n  .option(\"--no-validate-graph\", \"Skip the SHACL graph guardrail on proposals\")\n  .option(\"--sections\", \"Also propose per-section metadata\")\n  .option(\n    \"--max-turns <n>\",\n    \"Stop after this many inference calls (a cached page costs none)\",\n    countOption(\"--max-turns\"),\n  )\n  .option(\n    \"--confidence <n>\",\n    \"Minimum model confidence (0..1) to write a field (default: config, 0.7)\",\n    numericOption(\"--confidence\", { min: 0, max: 1 }),\n  )\n  .option(\n    // Comma-separated and given once: one separator per list (proposal 0034).\n    \"--fields <list>\",\n    `Fields to propose (comma-separated; default: config, then every field)`,\n    fieldsOption,\n  )\n  // The nameable providers, and `auto`. `mock` is the library's test double:\n  // accepted when asked for by name, never offered.\n  .option(\n    \"--provider <name>\",\n    \"Provider: auto (default) | anthropic | openai | claude-cli | llama-cpp\",\n  )\n  .option(\"--model <model>\", \"Model override; needs a named provider, from here or config\")\n  .option(\"--local\", LOCAL_FLAG_HELP)\n  // Typed inline, as every other action in this file is. The option parsers\n  // above (`numericOption`, `choiceOption`, `fieldsOption`) have already thrown\n  // on anything malformed by the time this runs, so a cast per field would be\n  // safe — but it would also be the one command with the most options and the\n  // least help from the compiler.\n  .action(async (paths: string[], opts: InputFlags & {\n    config?: string | boolean;\n    collection?: string[];\n    exclude?: string[];\n    dryRun?: boolean;\n    force?: boolean;\n    cache?: boolean;\n    validateGraph?: boolean;\n    sections?: boolean;\n    maxTurns?: number;\n    confidence?: number;\n    fields?: FillField[];\n    provider?: string;\n    model?: string;\n    local?: boolean;\n    format: GraphFormat;\n  }) => {\n    try {\n      const report = await runFill({\n        paths,\n        ...documentOptions(opts),\n        ...(await inputOptions(paths, opts)),\n        dryRun: opts.dryRun,\n        force: opts.force,\n        noCache: opts.cache === false,\n        noValidateGraph: opts.validateGraph === false,\n        sections: opts.sections,\n        maxTurns: opts.maxTurns,\n        confidence: opts.confidence,\n        fields: opts.fields,\n        provider: opts.provider,\n        model: opts.model,\n        local: opts.local,\n      });\n      // Same channel discipline as build: warnings on stderr, so stdout stays\n      // the report, and a warning never changes the exit code.\n      for (const warning of report.warnings) warn(warning);\n      const rendered = renderFill(report, opts.format);\n      if (paths.includes(STDIN)) {\n        // With `-` the filled document owns stdout, as under `meta fill -`,\n        // and the report in either format is a diagnostic on stderr.\n        if (report.stdinDocument !== undefined) {\n          process.stdout.write(report.stdinDocument);\n        }\n        if (rendered.length > 0) process.stderr.write(`${rendered}\\n`);\n      } else {\n        console.log(rendered);\n      }\n      process.exitCode = report.exitCode;\n    } catch (e) {\n      fail(e);\n    }\n  });\n\nprogram\n  .command(\"query\")\n  .description(\n    \"Match triple patterns against the built graph (omit a term for wildcard)\",\n  )\n  // Long-only, and named for the triple position each one fills. `-o` is\n  // `--out` on every other graph verb and `-s` is meta's schema flag; a\n  // one-letter spelling that means two things in one family costs more than\n  // the letters it saves.\n  .option(\"--subject <term>\", \"Subject IRI or prefixed name\")\n  .option(\"--predicate <term>\", \"Predicate IRI or prefixed name\")\n  .option(\"--object <term>\", \"Object IRI, prefixed name, or literal value\")\n  .option(\"-c, --config <path>\", \"Path to manni.config.yaml\")\n  .option(\"--no-config\", \"Ignore any discovered config file\")\n  .option(\"-g, --graph <path>\", \"Graph .ttl path (default: config out)\")\n  .option(\n    \"-f, --format <format>\",\n    `Output: ${GRAPH_FORMAT_LIST}`,\n    formatOption,\n    \"pretty\",\n  )\n  .action(\n    (opts: {\n      subject?: string;\n      predicate?: string;\n      object?: string;\n      config?: string | boolean;\n      graph?: string;\n      format: GraphFormat;\n    }) => {\n      try {\n        const { subject, predicate, object, ...others } = rest(opts);\n        const result = runQuery({\n          ...others,\n          ...documentOptions(opts),\n          ...(subject === undefined ? {} : { s: subject }),\n          ...(predicate === undefined ? {} : { p: predicate }),\n          ...(object === undefined ? {} : { o: object }),\n        });\n        console.log(renderQuery(result, opts.format));\n      } catch (e) {\n        fail(e);\n      }\n    },\n  );\n\nprogram\n  .command(\"stats\")\n  .description(\n    \"Summarize the built graph: counts, orphans, broken links, hubs, metadata coverage\",\n  )\n  .option(\"-c, --config <path>\", \"Path to manni.config.yaml\")\n  .option(\"--no-config\", \"Ignore any discovered config file\")\n  .option(\"-g, --graph <path>\", \"Graph .ttl path (default: config out)\")\n  .option(\n    \"-f, --format <format>\",\n    `Output: ${GRAPH_FORMAT_LIST}`,\n    formatOption,\n    \"pretty\",\n  )\n  .option(\n    \"--check\",\n    \"Exit 1 when broken internal links exist or coverage is below threshold\",\n  )\n  .option(\n    \"--top <n>\",\n    \"How many most-connected docs to list\",\n    countOption(\"--top\"),\n  )\n  .option(\n    \"--coverage-threshold <pct>\",\n    \"Minimum metadata coverage % (all fields); overrides config for this run\",\n    // A percentage, so 0..100 rather than the 0..1 of a confidence. NaN here is\n    // worse than a wrong number: `pct < NaN` is false for every field, so the\n    // gate this flag exists to tighten would silently pass instead.\n    numericOption(\"--coverage-threshold\", { min: 0, max: 100 }),\n  )\n  .action(\n    (opts: {\n      config?: string | boolean;\n      graph?: string;\n      format: GraphFormat;\n      check?: boolean;\n      top?: number;\n      coverageThreshold?: number;\n    }) => {\n      try {\n        const report = runStats({ ...rest(opts), ...documentOptions(opts) });\n        console.log(renderStats(report, opts.format));\n        process.exitCode = report.exitCode;\n      } catch (e) {\n        fail(e);\n      }\n    },\n  );\n\nprogram\n  .command(\"search\")\n  .description(\"Rank graph nodes for a text query (needs `export search`)\")\n  .argument(\"<query>\", \"Text query\")\n  .option(\"-c, --config <path>\", \"Path to manni.config.yaml\")\n  .option(\"--no-config\", \"Ignore any discovered config file\")\n  .option(\"-g, --graph <path>\", \"Graph .ttl path (default: config out)\")\n  .option(\n    \"-i, --index <dir>\",\n    \"Directory holding the indexes and manifest (default: beside the graph)\",\n  )\n  .option(\n    \"--lang <tag>\",\n    \"Which localization to search (required when the corpus has more than one)\",\n  )\n  .option(\"--limit <n>\", \"Maximum results (default 10)\", countOption(\"--limit\"))\n  .option(\n    \"--vectors <path>\",\n    \"Vector sidecar path (default: from the manifest)\",\n  )\n  .option(\n    \"--mode <mode>\",\n    `Which legs to run: ${SEARCH_MODES.join(\" | \")} (default: hybrid when vectors exist)`,\n    choiceOption(\"--mode\", SEARCH_MODES),\n  )\n  .option(\n    \"-f, --format <format>\",\n    `Output: ${GRAPH_FORMAT_LIST}`,\n    formatOption,\n    \"pretty\",\n  )\n  .action(\n    async (\n      query: string,\n      opts: {\n        config?: string | boolean;\n        graph?: string;\n        index?: string;\n        lang?: string;\n        limit?: number;\n        vectors?: string;\n        mode?: SearchMode;\n        format: GraphFormat;\n      },\n    ) => {\n      try {\n        const report = await runSearch({\n          ...rest(opts),\n          ...documentOptions(opts),\n          query,\n        });\n        console.log(renderSearch(report, opts.format));\n      } catch (e) {\n        fail(e);\n      }\n    },\n  );\n\nprogram\n  .command(\"traverse\")\n  .description(\n    \"Walk the graph from a node, honoring scope rules, with the full trace\",\n  )\n  .argument(\"<node>\", \"Starting node: a full IRI or a prefix:local CURIE\")\n  .option(\"-c, --config <path>\", \"Path to manni.config.yaml\")\n  .option(\"--no-config\", \"Ignore any discovered config file\")\n  .option(\"-g, --graph <path>\", \"Graph .ttl path (default: config out)\")\n  .option(\n    \"-d, --depth <n>\",\n    \"Maximum hops from the node (default 1; 3 under --impact)\",\n    // Zero is allowed: it means the node itself, which is a real answer.\n    countOption(\"--depth\", 0),\n  )\n  // Comma-separated and given once: a CURIE holds no comma, so one separator\n  // is enough, and a second spelling would be a second thing to document.\n  .option(\n    \"--predicates <list>\",\n    \"Only follow these predicates (comma-separated)\",\n  )\n  .option(\"--reverse\", \"Follow inbound edges (who points at this node)\")\n  .option(\"--impact\", \"Transitive inbound reach: what a change here affects\")\n  .option(\n    \"--variant <variant>\",\n    \"Scope filter: product variant IRI, title, or slug\",\n  )\n  // Not `--subject`: on `query` that is a triple's subject, and one flag name\n  // means one thing across the domain.\n  .option(\"--software-subject <subject>\", \"Scope filter: software subject\")\n  .option(\"--lang <tag>\", \"Scope filter: BCP-47 language tag, matched in any case\")\n  .option(\"--limit <n>\", \"Stop after this many nodes\", countOption(\"--limit\"))\n  .option(\n    \"-f, --format <format>\",\n    `Output: ${GRAPH_FORMAT_LIST}`,\n    formatOption,\n    \"pretty\",\n  )\n  .action(\n    (\n      node: string,\n      opts: {\n        config?: string | boolean;\n        graph?: string;\n        depth?: number;\n        predicates?: string;\n        reverse?: boolean;\n        impact?: boolean;\n        variant?: string;\n        softwareSubject?: string;\n        lang?: string;\n        limit?: number;\n        format: GraphFormat;\n      },\n    ) => {\n      try {\n        const { softwareSubject, ...others } = rest(opts);\n        const report = runTraverse({\n          ...others,\n          ...documentOptions(opts),\n          ...(softwareSubject === undefined ? {} : { subject: softwareSubject }),\n          node,\n          predicates:\n            opts.predicates === undefined\n              ? undefined\n              : splitList(opts.predicates),\n        });\n        console.log(renderTraverse(report, opts.format));\n      } catch (e) {\n        fail(e);\n      }\n    },\n  );\n\nprogram\n  .command(\"embed\")\n  .description(\n    \"Compute local embeddings for the search index (needs @huggingface/transformers)\",\n  )\n  .option(\"-c, --config <path>\", \"Path to manni.config.yaml\")\n  .option(\"--no-config\", \"Ignore any discovered config file\")\n  .option(\"-g, --graph <path>\", \"Graph .ttl path (default: config out)\")\n  .option(\n    \"-i, --index <dir>\",\n    \"Directory holding the indexes and manifest (default: beside the graph)\",\n  )\n  .option(\n    \"-o, --out <dir>\",\n    \"Directory for the sidecars (default: the index directory)\",\n  )\n  // Not `--model`: on `fill` that is the inference model, a different thing.\n  .option(\n    \"--embedding-model <id>\",\n    \"Embedding model id (any id; `mock` for offline runs)\",\n  )\n  .option(\"--dtype <dtype>\", \"Weight quantization (default q8)\")\n  .option(\"--no-cache\", \"Ignore the vector cache\")\n  .option(\n    \"-f, --format <format>\",\n    `Output: ${GRAPH_FORMAT_LIST}`,\n    formatOption,\n    \"pretty\",\n  )\n  .action(\n    async (opts: {\n      config?: string | boolean;\n      graph?: string;\n      index?: string;\n      out?: string;\n      embeddingModel?: string;\n      dtype?: string;\n      cache?: boolean;\n      format: GraphFormat;\n    }) => {\n      try {\n        const { embeddingModel, ...others } = rest(opts);\n        const report = await runEmbed({\n          ...others,\n          ...documentOptions(opts),\n          ...(embeddingModel === undefined ? {} : { model: embeddingModel }),\n          noCache: opts.cache === false,\n        });\n        console.log(renderEmbed(report, opts.format));\n      } catch (e) {\n        fail(e);\n      }\n    },\n  );\n\nprogram\n  .command(\"export\")\n  .description(\n    \"Reserialize the built graph into a consumer format (jsonld file, iirds package, or search index)\",\n  )\n  // The target is a positional, not `-f`: `-f` is the output format in every\n  // other verb of the family (0051 §2), and one flag cannot mean two things.\n  .argument(\"<target>\", `What to write: ${EXPORT_TARGETS.join(\" | \")}`)\n  .option(\"-c, --config <path>\", \"Path to manni.config.yaml\")\n  .option(\"--no-config\", \"Ignore any discovered config file\")\n  .option(\"-g, --graph <path>\", \"Graph .ttl path (default: config out)\")\n  .option(\n    \"-o, --out <path>\",\n    \"Output path (default: the graph path with the target's extension)\",\n  )\n  .action(\n    async (\n      target: string,\n      opts: { config?: string | boolean; graph?: string; out?: string },\n    ) => {\n      try {\n        if (!(EXPORT_TARGETS as readonly string[]).includes(target)) {\n          throw new GraphError(\n            `Unknown export target \"${target}\". Use ${EXPORT_TARGETS.join(\" | \")}.`,\n          );\n        }\n        const result = await runExport({\n          ...documentOptions(opts),\n          graph: opts.graph,\n          format: target as ExportFormat,\n          out: opts.out,\n        });\n        for (const warning of result.warnings) warn(warning);\n        console.log(\n          `Wrote ${result.nodes} node${result.nodes === 1 ? \"\" : \"s\"} to ${result.outPath}`,\n        );\n      } catch (e) {\n        fail(e);\n      }\n    },\n  );\n\nreturn program;\n}\n","/**\n * What `-f` accepts, per verb.\n *\n * Each verb's renderer lives beside its command core (`renderCheck`,\n * `renderStats`, …); what belongs here is the *list*, stated once so the\n * union, the guard, the help text and the refusal sentence cannot drift\n * apart. It is the same shape a11y and cite keep (`A11Y_FORMATS`,\n * `REPORT_FORMATS`), which is why the sentence a user reads is the family's.\n *\n * Every verb takes `pretty | json`. `check` also takes `github`, because it is\n * the CI gate: it is the one graph verb whose output changes what a reviewer sees\n * on a pull request (proposal 0051 §2). It names its own list here rather than\n * widening the shared one, so no other verb advertises a format it cannot\n * render.\n */\n\n/** The list every graph verb's `-f` accepts, in the order messages list them. */\nexport const GRAPH_FORMATS = [\"pretty\", \"json\"] as const;\nexport type GraphFormat = (typeof GRAPH_FORMATS)[number];\n\n/** `\"pretty | json\"`, for help text and the refusal sentence. */\nexport const GRAPH_FORMAT_LIST: string = GRAPH_FORMATS.join(\" | \");\n\n/** `check`'s list: the shared two plus the CI annotation format. */\nexport const CHECK_FORMATS = [...GRAPH_FORMATS, \"github\"] as const;\nexport type CheckFormat = (typeof CHECK_FORMATS)[number];\n\n/** `\"pretty | json | github\"`, for help text and the refusal sentence. */\nexport const CHECK_FORMAT_LIST: string = CHECK_FORMATS.join(\" | \");\n","/**\n * `manni graph init` — scaffold a starter `graph:` section in manni.config.yaml.\n *\n * The family file is shared with the other tools, so a file that already\n * exists is not overwritten: the section is appended to it, leaving the\n * siblings' keys and comments exactly as they were. A file that already has a\n * `graph:` key is refused.\n */\nimport { existsSync, readFileSync } from \"node:fs\";\nimport { resolve } from \"node:path\";\nimport { parse as parseYaml } from \"yaml\";\nimport { errorMessage } from \"../../shared/errors.js\";\nimport { writeTextAtomic } from \"../../shared/write-file.js\";\nimport { GraphError } from \"../types.js\";\nimport { CONFIG_SECTION, DEFAULT_CONFIG_FILENAME } from \"../core/config.js\";\n\nconst HEADER = `# manni.config.yaml — shared configuration for the manni family of tools.\n# Each tool reads its own top-level key; manni graph reads \"graph:\".\n`;\n\nconst STARTER = `# Base IRI for every minted node. Set this to a namespace you control;\n# without it, IRIs fall back to the urn:manni:graph: placeholder.\n# baseIri: https://example.com/graph/\n\n# There is no document set here. \\`manni graph build\\` and \\`manni graph fill\\` read the\n# paths you name, or the collections declared once for every tool at the TOP\n# level of this file, beside \\`graph:\\` rather than inside it:\n#\n#   collections:\n#     - name: site\n#       paths: [\"docs/**/*.md\"]\n#\n# Output of \\`manni graph build\\`.\nout: graph/graph.ttl\n\n# Map published-site routes back to source files so route-style links\n# (/docs/actions/find) become graph edges. A route may also carry the BCP-47\n# \\`language\\` labelling every document under its root; a page's own \\`lang\\`\n# frontmatter wins. Uncomment and adjust:\n# routes:\n#   - basePath: /docs\n#     root: docs\n#     extensions: [.md, .mdx, .markdown]\n#     indexFiles: [index, README]\n#   - basePath: /docs/de\n#     root: docs/de\n#     language: de\n\n# What to derive triples from. Remove entries to opt out.\nbuild:\n  derive: [frontmatter, sections, links, tags, images, code, provenance]\n\n# PROV-O settings. Git history is detected, not switched: per-file dates and\n# author agents, rename -> prov:wasRevisionOf, and the build activity's HEAD\n# committer date are derived wherever git can run over a repository, and a run\n# that cannot says so once and builds the rest. Deterministic per commit;\n# wall-clock time never enters the graph.\n# qualified: emit prov:qualifiedAttribution/qualifiedAssociation nodes\n#   with roles alongside the direct properties.\nprovenance:\n  qualified: true\n\n# Which fields a published graph may carry is read from x-manni-graph-output in\n# the schema set \\`manni meta validate\\` resolves for each page. Set that under\n# meta: (schemas, strict, register), not here. The default set keeps the\n# stewardship people fields (owner, stakeholders, reviewed-by) out.\n\n# SHACL shapes \\`manni graph check\\` validates the built graph against. Default:\n# the shapes contract bundled with manni (shapes/graph/shapes-1.0.0.ttl).\n# check:\n#   shapes: [\"./my-shapes.ttl\"]\n\n# Metadata coverage gate for \\`manni graph stats --check\\`. A number applies to\n# every measured field; a map gates named fields only. Unset gates nothing.\n# stats:\n#   coverageThreshold:\n#     title: 100\n#     description: 50\n\n# Which provider \\`manni graph fill\\` sends pages to. Unset, the family's\n# top-level providers: map decides, and then \\`auto\\`, which detects one: an\n# Anthropic key, then an OpenAI key, then the Claude CLI, then a local model.\n# Connection settings (apiKeyEnv, baseUrl, command) live in that map, declared\n# once for every manni tool. \\`--provider\\` wins over this, \\`--local\\` over both.\n# provider: anthropic          # auto | anthropic | openai | claude-cli | llama-cpp\n# model: claude-sonnet-4-5     # the provider's default when omitted\n\n# LLM settings for \\`manni graph fill\\` (SKOS frontmatter proposals).\nfill:\n  temperature: 0\n  # Stop after this many inference calls. One page is one turn, and a cached\n  # page spends none. Unset is unbounded.\n  # maxTurns: 50\n  cacheDir: .manni/graph/cache\n  # fill proposes every field; confidence (0..1 per field) gates what is\n  # written. Fields scored below the threshold are reported, not written.\n  confidenceThreshold: 0.7\n  # fields: defaults to every fillable field — uncomment to restrict.\n  # Record meta-provenance (model + /graph/ pointers + confidence) on filled docs.\n  writeProvenance: true\n  # Reject proposals that would violate the SHACL shapes contract\n  # (broader/narrower cycles, conflicting labels).\n  validateGraph: true\n  # Also propose per-section metadata. Off by default: it costs more output per\n  # call, and section metadata is explicit-only, so review it as carefully.\n  sections: false\n\n# Local embeddings for semantic search (\\`manni graph embed\\`). Needs the optional\n# peer: npm install @huggingface/transformers\n# embed:\n#   model: onnx-community/granite-embedding-small-english-r2-ONNX\n#   dtype: q8            # q8 keeps embedding reproducible across platforms\n#   out: graph              # directory for the per-language vector sidecars\n#   cacheDir: .manni/graph/embed-cache\n\n# Optional enrichment for \\`manni graph export iirds\\` (the iiRDS package).\n# Absent, a minimal valid package is still produced.\n# export:\n#   iirds:\n#     title: My Docs        # package title (default: \"manni graph export\")\n#     creator: Acme Corp     # Creator iirds:Party + vcard:Organization\n#     version: \"1.3\"         # iiRDS version literal: \"1.2\" | \"1.3\"\n`;\n\n/** The starter as a `graph:` section: every line nested one level. */\nfunction starterSection(): string {\n  const body = STARTER.split(\"\\n\")\n    .map((line) => (line === \"\" ? \"\" : `  ${line}`))\n    .join(\"\\n\");\n  return `${CONFIG_SECTION}:\\n${body}`;\n}\n\nexport async function runInit(cwd = process.cwd()): Promise<string> {\n  const path = resolve(cwd, DEFAULT_CONFIG_FILENAME);\n  if (!existsSync(path)) {\n    await writeTextAtomic(path, `${HEADER}${starterSection()}`);\n    return path;\n  }\n\n  // A family file is already here. Parse it to make sure a `graph:` key can be\n  // appended: the document must be a mapping (or empty) without one.\n  const text = readFileSync(path, \"utf8\");\n  let doc: unknown;\n  try {\n    doc = parseYaml(text);\n  } catch (e) {\n    throw new GraphError(\n      `Invalid YAML in ${DEFAULT_CONFIG_FILENAME}: ${errorMessage(e)}`,\n    );\n  }\n  if (doc != null && (typeof doc !== \"object\" || Array.isArray(doc))) {\n    throw new GraphError(\n      `${DEFAULT_CONFIG_FILENAME}: top level must be a mapping — not adding a \\`${CONFIG_SECTION}:\\` section to it.`,\n    );\n  }\n  if (doc != null && Object.hasOwn(doc, CONFIG_SECTION)) {\n    throw new GraphError(\n      `${DEFAULT_CONFIG_FILENAME} already has a \\`${CONFIG_SECTION}:\\` section — not overwriting.`,\n    );\n  }\n  // Append as text rather than re-serialising the document, so the siblings'\n  // keys and comments come out byte-for-byte as they went in.\n  const separator = text === \"\" || text.endsWith(\"\\n\") ? \"\" : \"\\n\";\n  const blank = text === \"\" ? \"\" : \"\\n\";\n  await writeTextAtomic(\n    path,\n    `${text}${separator}${blank}${starterSection()}`,\n  );\n  return 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+{"version":3,"sources":["../src/graph/cli.ts","../src/graph/reporters/index.ts","../src/graph/commands/init.ts"],"sourcesContent":["/**\n * The graph program. Named `graph` because that is where it is mounted\n * (`manni graph …`); `src/cli.ts` adds it to the umbrella and runs it.\n *\n * Grammar per proposals 0034 and 0051 §2: the domain owns verbs and has no\n * default subcommand, `-f` means the output format everywhere and is checked\n * against the verb's list, and a list reaches a flag by exactly one\n * separator. The plumbing is the family's: `fail()` from `src/shared/run.ts`,\n * `warn()` from `src/shared/warn.ts`, and `--no-color` from\n * `src/shared/color.ts`.\n */\nimport { Command } from \"commander\";\nimport pkg from \"../../package.json\" with { type: \"json\" };\nimport {\n  collect,\n  configOption,\n  readStdin,\n  splitList,\n} from \"../shared/cli-options.js\";\nimport { shouldColor } from \"../shared/color.js\";\nimport { fail } from \"../shared/run.js\";\nimport { warn } from \"../shared/warn.js\";\nimport { GraphError } from \"./types.js\";\nimport { LOCAL_FLAG_HELP } from \"../shared/providers.js\";\nimport { ALL_FILL_FIELDS, type FillField } from \"./core/config.js\";\nimport {\n  assertInputFormat,\n  DEFAULT_EXTENSIONS,\n  STDIN,\n} from \"./core/discover.js\";\nimport {\n  CHECK_FORMATS,\n  CHECK_FORMAT_LIST,\n  GRAPH_FORMATS,\n  GRAPH_FORMAT_LIST,\n  type CheckFormat,\n  type GraphFormat,\n} from \"./reporters/index.js\";\nimport { runBuild } from \"./commands/build.js\";\nimport { renderCheck, runCheck } from \"./commands/check.js\";\nimport {\n  EXPORT_TARGETS,\n  runExport,\n  type ExportFormat,\n} from \"./commands/export.js\";\nimport { renderQuery, runQuery } from \"./commands/query.js\";\nimport { renderFill, runFill } from \"./commands/fill.js\";\nimport { runInit } from \"./commands/init.js\";\nimport { renderEmbed, runEmbed } from \"./commands/embed.js\";\nimport {\n  renderSearch,\n  runSearch,\n  SEARCH_MODES,\n  type SearchMode,\n} from \"./commands/search.js\";\nimport { renderStats, runStats } from \"./commands/stats.js\";\nimport { renderTraverse, runTraverse } from \"./commands/traverse.js\";\n\n/**\n * Whether `command`'s output gets colour: this domain's `--no-color` and\n * `NO_COLOR` turn it off, and otherwise only a TTY turns it on\n * (`shouldColor`). `isTTY` is passed uncoerced: Node leaves it undefined off\n * a terminal, never false, and `shouldColor` reads a missing one as \"not a\n * terminal\".\n *\n * Exported because this is where the decision is testable — a spawned bin is\n * never a TTY. graph's reporters print no colour yet; when one does, it takes\n * the boolean from here rather than consulting the environment itself.\n */\nexport function colorFor(\n  command: Command,\n  isTTY: boolean | undefined,\n  env?: NodeJS.ProcessEnv,\n): boolean {\n  // commander maps --no-color to opts.color === false, on the command that\n  // declares it.\n  const noColor = colorOwner(command).opts().color === false;\n  return shouldColor({ noColor, isTTY, env });\n}\n\n/**\n * The nearest command, this one or an ancestor, that declares `--no-color`:\n * the `graph` program, wherever it is mounted. Not the root: under the umbrella\n * that is `manni`, which has no `--no-color` of its own.\n */\nfunction colorOwner(command: Command): Command {\n  for (let c: Command | null = command; c !== null; c = c.parent) {\n    if (c.options.some((o) => o.long === \"--no-color\")) return c;\n  }\n  return command;\n}\n\nexport function buildProgram(): Command {\nconst program = new Command();\n\nprogram\n  .name(\"graph\")\n  .description(\n    \"Deterministic knowledge graphs derived from documentation frontmatter and formatting.\",\n  )\n  .version(pkg.version)\n  .option(\"--no-color\", \"disable colored output\")\n  // A pointer, not the whole help screen: the message that precedes it\n  // already names the offending flag.\n  .showHelpAfterError(\"(add --help for usage)\")\n  // MUST come before the `.command()` calls below. `copyInheritedSettings`\n  // copies `_exitCallback` by value at subcommand-creation time, so an\n  // `exitOverride()` installed afterwards leaves every subcommand still\n  // calling `process.exit(1)` — which reports a usage error as a finding.\n  .exitOverride();\n\n/**\n * Parse a numeric CLI option, refusing what the config schema refuses.\n *\n * `Number.parseFloat`/`parseInt` return NaN for `abc` and silently accept\n * out-of-range values, and NaN then disables whatever gate it feeds — a cost\n * cap that never fires, a confidence gate that writes everything, a `--top`\n * that asks for a negative number of rows. The documented precedence is\n * config → Ajv → CLI override, so the override has to be held to the same range.\n */\nfunction numericOption(\n  flag: string,\n  { min, max, integer }: { min: number; max?: number; integer?: boolean },\n) {\n  return (raw: string): number => {\n    const value = Number.parseFloat(raw);\n    if (!Number.isFinite(value)) {\n      throw new GraphError(`${flag} expects a number, got \"${raw}\".`);\n    }\n    if (integer && !Number.isInteger(value)) {\n      throw new GraphError(`${flag} expects a whole number, got ${value}.`);\n    }\n    if (value < min || (max !== undefined && value > max)) {\n      const range = max === undefined ? `>= ${min}` : `${min}..${max}`;\n      throw new GraphError(`${flag} must be ${range}, got ${value}.`);\n    }\n    return value;\n  };\n}\n\n/** A count: a whole number, at least `min` (1 unless the flag allows zero). */\nfunction countOption(flag: string, min = 1) {\n  return numericOption(flag, { min, integer: true });\n}\n\n/**\n * Hold a CLI override to the same list its config key is held to.\n *\n * `fill.provider` is Ajv-validated against the schema enum; the `--provider`\n * override was an arbitrary string cast straight to `ProviderName`, so the\n * documented config → Ajv → CLI precedence had a hole at the last step.\n */\nfunction enumOption<T extends string>(flag: string, allowed: readonly T[]) {\n  return (raw: string): T => {\n    if (!(allowed as readonly string[]).includes(raw)) {\n      throw new GraphError(\n        `${flag} must be one of ${allowed.join(\" | \")}, got \"${raw}\".`,\n      );\n    }\n    return raw as T;\n  };\n}\n\n/**\n * A flag whose value is one of a named set, refused in the family's words:\n * `Unknown --format \"xml\". Use pretty | json.` The check runs while the\n * options are parsed, so a typo costs a message rather than a graph load.\n */\nfunction choiceOption<T extends string>(flag: string, allowed: readonly T[]) {\n  return (raw: string): T => {\n    if (!(allowed as readonly string[]).includes(raw)) {\n      throw new GraphError(`Unknown ${flag} \"${raw}\". Use ${allowed.join(\" | \")}.`);\n    }\n    return raw as T;\n  };\n}\n\n/** `-f, --format`: every verb's list is `pretty | json` (0051 §2). */\nconst formatOption = choiceOption(\"--format\", GRAPH_FORMATS);\n\n/** `check`'s own, which adds `github` — the CI gate's annotation format. */\nconst checkFormatOption = choiceOption(\"--format\", CHECK_FORMATS);\n\n/**\n * `--fields <list>`: comma-separated and given once, never repeatable — one\n * separator per list (proposal 0034), and the spelling `meta fill --fields`\n * already uses. Each value is held to the same list `fill.fields` is.\n */\nconst fieldsOption = (raw: string): FillField[] =>\n  splitList(raw).map((value) => enumOption(\"--fields\", ALL_FILL_FIELDS)(value));\n\n/**\n * The document-set surface the verbs that read documents share (proposals\n * 0041 and 0051 §1): positional `[paths...]` with `-` for stdin,\n * `--collection` and `--exclude` (each one value per occurrence), `--as`,\n * `--ext` (comma-separated, given once), `--allow-empty`, and\n * `-c`/`--no-config`. Declared once so the verbs cannot drift apart on a name\n * or a description, and worded as `meta` and `lint` word them.\n */\nfunction documentInputs(command: Command, verb: string): Command {\n  return command\n    .argument(\n      \"[paths...]\",\n      `files, directories, or globs to ${verb} (use - for stdin)`,\n    )\n    .option(\n      \"--collection <name>\",\n      \"Configured collection to read (repeatable)\",\n      collect,\n      [],\n    )\n    .option(\"--exclude <glob>\", \"Glob to exclude (repeatable)\", collect, [])\n    .option(\n      \"--as <format>\",\n      \"Parse every input as asciidoc, html, markdown, mdx, rst or xml, whatever its extension. Required with -.\",\n    )\n    .option(\n      \"--ext <list>\",\n      \"comma-separated extensions for directory walks\",\n      DEFAULT_EXTENSIONS.join(\",\"),\n    )\n    .option(\"--allow-empty\", \"treat zero matched files as success\")\n    .option(\"-c, --config <path>\", \"Path to manni.config.yaml\")\n    .option(\"--no-config\", \"Ignore any discovered config file\");\n}\n\n/** The input flags as commander hands them over. */\ninterface InputFlags {\n  as?: string;\n  ext: string;\n  allowEmpty?: boolean;\n}\n\n/**\n * The input flags for a core, and stdin when `paths` holds `-`. `--as` is\n * checked first, so `-` without it is refused before anything waits on stdin.\n */\nasync function inputOptions(\n  paths: string[],\n  opts: InputFlags,\n): Promise<{\n  as?: string;\n  ext: string[];\n  allowEmpty?: boolean;\n  stdinContent?: string;\n}> {\n  assertInputFormat(paths, opts.as);\n  return {\n    ...(opts.as === undefined ? {} : { as: opts.as }),\n    ext: splitList(opts.ext),\n    ...(opts.allowEmpty === true ? { allowEmpty: true } : {}),\n    ...(paths.includes(STDIN) ? { stdinContent: await readStdin() } : {}),\n  };\n}\n\n/**\n * `-c`/`--no-config` for a verb that reads a built graph rather than a\n * document set. They share one commander attribute, which `configOption`\n * splits.\n */\nfunction configInputs(command: Command): Command {\n  return command\n    .option(\"-c, --config <path>\", \"Path to manni.config.yaml\")\n    .option(\"--no-config\", \"Ignore any discovered config file\");\n}\n\n/**\n * `opts` minus the one attribute `-c` and `--no-config` share. `documentOptions`\n * restates it as the two fields a core reads, and spreading the raw value over\n * them would put commander's `false` back where a path belongs.\n */\nfunction rest<T extends { config?: string | boolean }>(\n  opts: T,\n): Omit<T, \"config\"> {\n  const { config, ...others } = opts;\n  return others;\n}\n\n/** The shared options as the command cores take them. */\nfunction documentOptions(opts: {\n  collection?: string[];\n  exclude?: string[];\n  config?: string | boolean;\n}): {\n  config?: string;\n  noConfig?: boolean;\n  collection?: string[];\n  exclude?: string[];\n} {\n  const { configPath, noConfig } = configOption(opts.config);\n  return {\n    ...(configPath === undefined ? {} : { config: configPath }),\n    ...(noConfig === true ? { noConfig } : {}),\n    ...(opts.collection === undefined ? {} : { collection: opts.collection }),\n    ...(opts.exclude === undefined ? {} : { exclude: opts.exclude }),\n  };\n}\n\nprogram\n  .command(\"init\")\n  .description(\"Add a starter `graph:` section to manni.config.yaml in the current directory\")\n  .action(async () => {\n    try {\n      console.log(`Created ${await runInit()}`);\n    } catch (e) {\n      fail(e);\n    }\n  });\n\ndocumentInputs(\n  program\n    .command(\"build\")\n    .description(\"Derive the knowledge graph and write deterministic Turtle\"),\n  \"build\",\n)\n  .option(\"-o, --out <path>\", \"Output .ttl path (default: config out)\")\n  .action(async (paths: string[], opts: InputFlags & {\n    config?: string | boolean;\n    collection?: string[];\n    exclude?: string[];\n    out?: string;\n  }) => {\n    try {\n      const result = await runBuild({\n        paths,\n        ...documentOptions(opts),\n        ...(await inputOptions(paths, opts)),\n        out: opts.out,\n      });\n      // Warnings go to stderr so stdout stays the machine-readable summary;\n      // a degraded build is still a successful one, so the exit code is 0.\n      for (const warning of result.warnings) warn(warning);\n      console.log(\n        `Wrote ${result.outPath} (${result.docs} docs, ${result.quads} triples)`,\n      );\n    } catch (e) {\n      fail(e);\n    }\n  });\n\nconfigInputs(\n  program\n    .command(\"check\")\n    .description(\n      \"Validate the built graph against the bundled SHACL shapes (errors exit 1)\",\n    ),\n)\n  .option(\"-g, --graph <path>\", \"Graph .ttl path (default: config out)\")\n  // One path per occurrence, never split on commas: a path may hold one.\n  .option(\n    \"--shapes <path>\",\n    \"Shapes .ttl file; repeatable (default: config check.shapes, then bundled)\",\n    collect,\n    [],\n  )\n  .option(\n    \"-f, --format <format>\",\n    `Output: ${CHECK_FORMAT_LIST}`,\n    checkFormatOption,\n    \"pretty\",\n  )\n  .action(\n    async (opts: {\n      config?: string | boolean;\n      graph?: string;\n      shapes: string[];\n      format: CheckFormat;\n    }) => {\n      try {\n        const report = await runCheck({ ...rest(opts), ...documentOptions(opts) });\n        console.log(renderCheck(report, opts.format));\n        process.exitCode = report.exitCode;\n      } catch (e) {\n        fail(e);\n      }\n    },\n  );\n\ndocumentInputs(\n  program\n    .command(\"fill\")\n    .description(\n      \"Propose `graph:` frontmatter fields with an LLM, gated by confidence, and write them back\",\n    ),\n  \"fill\",\n)\n  .option(\n    \"-f, --format <format>\",\n    `Output: ${GRAPH_FORMAT_LIST}`,\n    formatOption,\n    \"pretty\",\n  )\n  .option(\"--dry-run\", \"Report proposals without writing files\")\n  .option(\"--force\", \"Overwrite human-set graph fields\")\n  .option(\"--no-cache\", \"Bypass the proposal cache\")\n  .option(\"--no-validate-graph\", \"Skip the SHACL graph guardrail on proposals\")\n  .option(\"--sections\", \"Also propose per-section metadata\")\n  .option(\n    \"--max-turns <n>\",\n    \"Stop after this many inference calls (a cached page costs none)\",\n    countOption(\"--max-turns\"),\n  )\n  .option(\n    \"--confidence <n>\",\n    \"Minimum model confidence (0..1) to write a field (default: config, 0.7)\",\n    numericOption(\"--confidence\", { min: 0, max: 1 }),\n  )\n  .option(\n    // Comma-separated and given once: one separator per list (proposal 0034).\n    \"--fields <list>\",\n    `Fields to propose (comma-separated; default: config, then every field)`,\n    fieldsOption,\n  )\n  // The nameable providers, and `auto`. `mock` is the library's test double:\n  // accepted when asked for by name, never offered.\n  .option(\n    \"--provider <name>\",\n    \"Provider: auto (default) | anthropic | openai | claude-cli | llama-cpp\",\n  )\n  .option(\"--model <model>\", \"Model override; needs a named provider, from here or config\")\n  .option(\"--local\", LOCAL_FLAG_HELP)\n  // Typed inline, as every other action in this file is. The option parsers\n  // above (`numericOption`, `choiceOption`, `fieldsOption`) have already thrown\n  // on anything malformed by the time this runs, so a cast per field would be\n  // safe — but it would also be the one command with the most options and the\n  // least help from the compiler.\n  .action(async (paths: string[], opts: InputFlags & {\n    config?: string | boolean;\n    collection?: string[];\n    exclude?: string[];\n    dryRun?: boolean;\n    force?: boolean;\n    cache?: boolean;\n    validateGraph?: boolean;\n    sections?: boolean;\n    maxTurns?: number;\n    confidence?: number;\n    fields?: FillField[];\n    provider?: string;\n    model?: string;\n    local?: boolean;\n    format: GraphFormat;\n  }) => {\n    try {\n      const report = await runFill({\n        paths,\n        ...documentOptions(opts),\n        ...(await inputOptions(paths, opts)),\n        dryRun: opts.dryRun,\n        force: opts.force,\n        noCache: opts.cache === false,\n        noValidateGraph: opts.validateGraph === false,\n        sections: opts.sections,\n        maxTurns: opts.maxTurns,\n        confidence: opts.confidence,\n        fields: opts.fields,\n        provider: opts.provider,\n        model: opts.model,\n        local: opts.local,\n      });\n      // Same channel discipline as build: warnings on stderr, so stdout stays\n      // the report, and a warning never changes the exit code.\n      for (const warning of report.warnings) warn(warning);\n      const rendered = renderFill(report, opts.format);\n      if (paths.includes(STDIN)) {\n        // With `-` the filled document owns stdout, as under `meta fill -`,\n        // and the report in either format is a diagnostic on stderr.\n        if (report.stdinDocument !== undefined) {\n          process.stdout.write(report.stdinDocument);\n        }\n        if (rendered.length > 0) process.stderr.write(`${rendered}\\n`);\n      } else {\n        console.log(rendered);\n      }\n      process.exitCode = report.exitCode;\n    } catch (e) {\n      fail(e);\n    }\n  });\n\nprogram\n  .command(\"query\")\n  .description(\n    \"Match triple patterns against the built graph (omit a term for wildcard)\",\n  )\n  // Long-only, and named for the triple position each one fills. `-o` is\n  // `--out` on every other graph verb and `-s` is meta's schema flag; a\n  // one-letter spelling that means two things in one family costs more than\n  // the letters it saves.\n  .option(\"--subject <term>\", \"Subject IRI or prefixed name\")\n  .option(\"--predicate <term>\", \"Predicate IRI or prefixed name\")\n  .option(\"--object <term>\", \"Object IRI, prefixed name, or literal value\")\n  .option(\"-c, --config <path>\", \"Path to manni.config.yaml\")\n  .option(\"--no-config\", \"Ignore any discovered config file\")\n  .option(\"-g, --graph <path>\", \"Graph .ttl path (default: config out)\")\n  .option(\n    \"-f, --format <format>\",\n    `Output: ${GRAPH_FORMAT_LIST}`,\n    formatOption,\n    \"pretty\",\n  )\n  .action(\n    (opts: {\n      subject?: string;\n      predicate?: string;\n      object?: string;\n      config?: string | boolean;\n      graph?: string;\n      format: GraphFormat;\n    }) => {\n      try {\n        const { subject, predicate, object, ...others } = rest(opts);\n        const result = runQuery({\n          ...others,\n          ...documentOptions(opts),\n          ...(subject === undefined ? {} : { s: subject }),\n          ...(predicate === undefined ? {} : { p: predicate }),\n          ...(object === undefined ? {} : { o: object }),\n        });\n        console.log(renderQuery(result, opts.format));\n      } catch (e) {\n        fail(e);\n      }\n    },\n  );\n\nprogram\n  .command(\"stats\")\n  .description(\n    \"Summarize the built graph: counts, orphans, broken links, hubs, metadata coverage\",\n  )\n  .option(\"-c, --config <path>\", \"Path to manni.config.yaml\")\n  .option(\"--no-config\", \"Ignore any discovered config file\")\n  .option(\"-g, --graph <path>\", \"Graph .ttl path (default: config out)\")\n  .option(\n    \"-f, --format <format>\",\n    `Output: ${GRAPH_FORMAT_LIST}`,\n    formatOption,\n    \"pretty\",\n  )\n  .option(\n    \"--check\",\n    \"Exit 1 when broken internal links exist or coverage is below threshold\",\n  )\n  .option(\n    \"--top <n>\",\n    \"How many most-connected docs to list\",\n    countOption(\"--top\"),\n  )\n  .option(\n    \"--coverage-threshold <pct>\",\n    \"Minimum metadata coverage % (all fields); overrides config for this run\",\n    // A percentage, so 0..100 rather than the 0..1 of a confidence. NaN here is\n    // worse than a wrong number: `pct < NaN` is false for every field, so the\n    // gate this flag exists to tighten would silently pass instead.\n    numericOption(\"--coverage-threshold\", { min: 0, max: 100 }),\n  )\n  .action(\n    (opts: {\n      config?: string | boolean;\n      graph?: string;\n      format: GraphFormat;\n      check?: boolean;\n      top?: number;\n      coverageThreshold?: number;\n    }) => {\n      try {\n        const report = runStats({ ...rest(opts), ...documentOptions(opts) });\n        console.log(renderStats(report, opts.format));\n        process.exitCode = report.exitCode;\n      } catch (e) {\n        fail(e);\n      }\n    },\n  );\n\nprogram\n  .command(\"search\")\n  .description(\"Rank graph nodes for a text query (needs `export search`)\")\n  .argument(\"<query>\", \"Text query\")\n  .option(\"-c, --config <path>\", \"Path to manni.config.yaml\")\n  .option(\"--no-config\", \"Ignore any discovered config file\")\n  .option(\"-g, --graph <path>\", \"Graph .ttl path (default: config out)\")\n  .option(\n    \"-i, --index <dir>\",\n    \"Directory holding the indexes and manifest (default: beside the graph)\",\n  )\n  .option(\n    \"--lang <tag>\",\n    \"Which localization to search (required when the corpus has more than one)\",\n  )\n  .option(\"--limit <n>\", \"Maximum results (default 10)\", countOption(\"--limit\"))\n  .option(\n    \"--vectors <path>\",\n    \"Vector sidecar path (default: from the manifest)\",\n  )\n  .option(\n    \"--mode <mode>\",\n    `Which legs to run: ${SEARCH_MODES.join(\" | \")} (default: hybrid when vectors exist)`,\n    choiceOption(\"--mode\", SEARCH_MODES),\n  )\n  .option(\n    \"-f, --format <format>\",\n    `Output: ${GRAPH_FORMAT_LIST}`,\n    formatOption,\n    \"pretty\",\n  )\n  .action(\n    async (\n      query: string,\n      opts: {\n        config?: string | boolean;\n        graph?: string;\n        index?: string;\n        lang?: string;\n        limit?: number;\n        vectors?: string;\n        mode?: SearchMode;\n        format: GraphFormat;\n      },\n    ) => {\n      try {\n        const report = await runSearch({\n          ...rest(opts),\n          ...documentOptions(opts),\n          query,\n        });\n        console.log(renderSearch(report, opts.format));\n      } catch (e) {\n        fail(e);\n      }\n    },\n  );\n\nprogram\n  .command(\"traverse\")\n  .description(\n    \"Walk the graph from a node, honoring scope rules, with the full trace\",\n  )\n  .argument(\"<node>\", \"Starting node: a full IRI or a prefix:local CURIE\")\n  .option(\"-c, --config <path>\", \"Path to manni.config.yaml\")\n  .option(\"--no-config\", \"Ignore any discovered config file\")\n  .option(\"-g, --graph <path>\", \"Graph .ttl path (default: config out)\")\n  .option(\n    \"-d, --depth <n>\",\n    \"Maximum hops from the node (default 1; 3 under --impact)\",\n    // Zero is allowed: it means the node itself, which is a real answer.\n    countOption(\"--depth\", 0),\n  )\n  // Comma-separated and given once: a CURIE holds no comma, so one separator\n  // is enough, and a second spelling would be a second thing to document.\n  .option(\n    \"--predicates <list>\",\n    \"Only follow these predicates (comma-separated)\",\n  )\n  .option(\"--reverse\", \"Follow inbound edges (who points at this node)\")\n  .option(\"--impact\", \"Transitive inbound reach: what a change here affects\")\n  .option(\n    \"--variant <variant>\",\n    \"Scope filter: product variant IRI, title, or slug\",\n  )\n  // Not `--subject`: on `query` that is a triple's subject, and one flag name\n  // means one thing across the domain.\n  .option(\"--software-subject <subject>\", \"Scope filter: software subject\")\n  .option(\"--lang <tag>\", \"Scope filter: BCP-47 language tag, matched in any case\")\n  .option(\"--limit <n>\", \"Stop after this many nodes\", countOption(\"--limit\"))\n  .option(\n    \"-f, --format <format>\",\n    `Output: ${GRAPH_FORMAT_LIST}`,\n    formatOption,\n    \"pretty\",\n  )\n  .action(\n    (\n      node: string,\n      opts: {\n        config?: string | boolean;\n        graph?: string;\n        depth?: number;\n        predicates?: string;\n        reverse?: boolean;\n        impact?: boolean;\n        variant?: string;\n        softwareSubject?: string;\n        lang?: string;\n        limit?: number;\n        format: GraphFormat;\n      },\n    ) => {\n      try {\n        const { softwareSubject, ...others } = rest(opts);\n        const report = runTraverse({\n          ...others,\n          ...documentOptions(opts),\n          ...(softwareSubject === undefined ? {} : { subject: softwareSubject }),\n          node,\n          predicates:\n            opts.predicates === undefined\n              ? undefined\n              : splitList(opts.predicates),\n        });\n        console.log(renderTraverse(report, opts.format));\n      } catch (e) {\n        fail(e);\n      }\n    },\n  );\n\nprogram\n  .command(\"embed\")\n  .description(\n    \"Compute local embeddings for the search index (needs @huggingface/transformers)\",\n  )\n  .option(\"-c, --config <path>\", \"Path to manni.config.yaml\")\n  .option(\"--no-config\", \"Ignore any discovered config file\")\n  .option(\"-g, --graph <path>\", \"Graph .ttl path (default: config out)\")\n  .option(\n    \"-i, --index <dir>\",\n    \"Directory holding the indexes and manifest (default: beside the graph)\",\n  )\n  .option(\n    \"-o, --out <dir>\",\n    \"Directory for the sidecars (default: the index directory)\",\n  )\n  // Not `--model`: on `fill` that is the inference model, a different thing.\n  .option(\n    \"--embedding-model <id>\",\n    \"Embedding model id (any id; `mock` for offline runs)\",\n  )\n  .option(\"--dtype <dtype>\", \"Weight quantization (default q8)\")\n  .option(\"--no-cache\", \"Ignore the vector cache\")\n  .option(\n    \"-f, --format <format>\",\n    `Output: ${GRAPH_FORMAT_LIST}`,\n    formatOption,\n    \"pretty\",\n  )\n  .action(\n    async (opts: {\n      config?: string | boolean;\n      graph?: string;\n      index?: string;\n      out?: string;\n      embeddingModel?: string;\n      dtype?: string;\n      cache?: boolean;\n      format: GraphFormat;\n    }) => {\n      try {\n        const { embeddingModel, ...others } = rest(opts);\n        const report = await runEmbed({\n          ...others,\n          ...documentOptions(opts),\n          ...(embeddingModel === undefined ? {} : { model: embeddingModel }),\n          noCache: opts.cache === false,\n        });\n        console.log(renderEmbed(report, opts.format));\n      } catch (e) {\n        fail(e);\n      }\n    },\n  );\n\nprogram\n  .command(\"export\")\n  .description(\n    \"Reserialize the built graph into a consumer format (jsonld file, iirds package, or search index)\",\n  )\n  // The target is a positional, not `-f`: `-f` is the output format in every\n  // other verb of the family (0051 §2), and one flag cannot mean two things.\n  .argument(\"<target>\", `What to write: ${EXPORT_TARGETS.join(\" | \")}`)\n  .option(\"-c, --config <path>\", \"Path to manni.config.yaml\")\n  .option(\"--no-config\", \"Ignore any discovered config file\")\n  .option(\"-g, --graph <path>\", \"Graph .ttl path (default: config out)\")\n  .option(\n    \"-o, --out <path>\",\n    \"Output path (default: the graph path with the target's extension)\",\n  )\n  .action(\n    async (\n      target: string,\n      opts: { config?: string | boolean; graph?: string; out?: string },\n    ) => {\n      try {\n        if (!(EXPORT_TARGETS as readonly string[]).includes(target)) {\n          throw new GraphError(\n            `Unknown export target \"${target}\". Use ${EXPORT_TARGETS.join(\" | \")}.`,\n          );\n        }\n        const result = await runExport({\n          ...documentOptions(opts),\n          graph: opts.graph,\n          format: target as ExportFormat,\n          out: opts.out,\n        });\n        for (const warning of result.warnings) warn(warning);\n        console.log(\n          `Wrote ${result.nodes} node${result.nodes === 1 ? \"\" : \"s\"} to ${result.outPath}`,\n        );\n      } catch (e) {\n        fail(e);\n      }\n    },\n  );\n\nreturn program;\n}\n","/**\n * What `-f` accepts, per verb.\n *\n * Each verb's renderer lives beside its command core (`renderCheck`,\n * `renderStats`, …); what belongs here is the *list*, stated once so the\n * union, the guard, the help text and the refusal sentence cannot drift\n * apart. It is the same shape a11y and cite keep (`A11Y_FORMATS`,\n * `REPORT_FORMATS`), which is why the sentence a user reads is the family's.\n *\n * Every verb takes `pretty | json`. `check` also takes `github`, because it is\n * the CI gate: it is the one graph verb whose output changes what a reviewer sees\n * on a pull request (proposal 0051 §2). It names its own list here rather than\n * widening the shared one, so no other verb advertises a format it cannot\n * render.\n */\n\n/** The list every graph verb's `-f` accepts, in the order messages list them. */\nexport const GRAPH_FORMATS = [\"pretty\", \"json\"] as const;\nexport type GraphFormat = (typeof GRAPH_FORMATS)[number];\n\n/** `\"pretty | json\"`, for help text and the refusal sentence. */\nexport const GRAPH_FORMAT_LIST: string = GRAPH_FORMATS.join(\" | \");\n\n/** `check`'s list: the shared two plus the CI annotation format. */\nexport const CHECK_FORMATS = [...GRAPH_FORMATS, \"github\"] as const;\nexport type CheckFormat = (typeof CHECK_FORMATS)[number];\n\n/** `\"pretty | json | github\"`, for help text and the refusal sentence. */\nexport const CHECK_FORMAT_LIST: string = CHECK_FORMATS.join(\" | \");\n","/**\n * `manni graph init` — scaffold a starter `graph:` section in manni.config.yaml.\n *\n * The family file is shared with the other tools, so a file that already\n * exists is not overwritten: the section is appended to it, leaving the\n * siblings' keys and comments exactly as they were. A file that already has a\n * `graph:` key is refused.\n */\nimport { existsSync, readFileSync } from \"node:fs\";\nimport { resolve } from \"node:path\";\nimport { parse as parseYaml } from \"yaml\";\nimport { errorMessage } from \"../../shared/errors.js\";\nimport { writeTextAtomic } from \"../../shared/write-file.js\";\nimport { GraphError } from \"../types.js\";\nimport { CONFIG_SECTION, DEFAULT_CONFIG_FILENAME } from \"../core/config.js\";\n\nconst HEADER = `# manni.config.yaml — shared configuration for the manni family of tools.\n# Each tool reads its own top-level key; manni graph reads \"graph:\".\n`;\n\nconst STARTER = `# Base IRI for every minted node. Set this to a namespace you control;\n# without it, IRIs fall back to the urn:manni:graph: placeholder.\n# baseIri: https://example.com/graph/\n\n# There is no document set here. \\`manni graph build\\` and \\`manni graph fill\\` read the\n# paths you name, or the collections declared once for every tool at the TOP\n# level of this file, beside \\`graph:\\` rather than inside it:\n#\n#   collections:\n#     - name: site\n#       paths: [\"docs/**/*.md\"]\n#\n# Output of \\`manni graph build\\`.\nout: graph/graph.ttl\n\n# Map published-site routes back to source files so route-style links\n# (/docs/actions/find) become graph edges. A route may also carry the BCP-47\n# \\`language\\` labelling every document under its root; a page's own \\`lang\\`\n# frontmatter wins. Uncomment and adjust:\n# routes:\n#   - basePath: /docs\n#     root: docs\n#     extensions: [.md, .mdx, .markdown]\n#     indexFiles: [index, README]\n#   - basePath: /docs/de\n#     root: docs/de\n#     language: de\n\n# What to derive triples from. Remove entries to opt out.\nbuild:\n  derive: [frontmatter, sections, links, tags, images, code, provenance]\n\n# PROV-O settings. Git history is detected, not switched: per-file dates and\n# author agents, rename -> prov:wasRevisionOf, and the build activity's HEAD\n# committer date are derived wherever git can run over a repository, and a run\n# that cannot says so once and builds the rest. Deterministic per commit;\n# wall-clock time never enters the graph.\n# qualified: emit prov:qualifiedAttribution/qualifiedAssociation nodes\n#   with roles alongside the direct properties.\nprovenance:\n  qualified: true\n\n# Which fields a published graph may carry is read from x-manni-graph-output in\n# the schema set \\`manni meta validate\\` resolves for each page. Set that under\n# meta: (schemas, strict, register), not here. The default set keeps the\n# stewardship people fields (owner, stakeholders, reviewed-by) out.\n\n# SHACL shapes \\`manni graph check\\` validates the built graph against. Default:\n# the shapes contract bundled with manni (shapes/graph/shapes-1.0.0.ttl).\n# check:\n#   shapes: [\"./my-shapes.ttl\"]\n\n# Metadata coverage gate for \\`manni graph stats --check\\`. A number applies to\n# every measured field; a map gates named fields only. Unset gates nothing.\n# stats:\n#   coverageThreshold:\n#     title: 100\n#     description: 50\n\n# Which provider \\`manni graph fill\\` sends pages to. Unset, the family's\n# top-level providers: map decides, and then \\`auto\\`, which detects one: an\n# Anthropic key, then an OpenAI key, then the Claude CLI, then a local model.\n# Connection settings (apiKeyEnv, baseUrl, command) live in that map, declared\n# once for every manni tool. \\`--provider\\` wins over this, \\`--local\\` over both.\n# provider: anthropic          # auto | anthropic | openai | claude-cli | llama-cpp\n# model: claude-sonnet-4-5     # the provider's default when omitted\n\n# LLM settings for \\`manni graph fill\\` (SKOS frontmatter proposals).\nfill:\n  temperature: 0\n  # Stop after this many inference calls. One page is one turn, and a cached\n  # page spends none. Unset is unbounded.\n  # maxTurns: 50\n  cacheDir: .manni/graph/cache\n  # fill proposes every field; confidence (0..1 per field) gates what is\n  # written. Fields scored below the threshold are reported, not written.\n  confidenceThreshold: 0.7\n  # fields: defaults to every fillable field — uncomment to restrict.\n  # Record meta-provenance (model + /graph/ pointers + confidence) on filled docs.\n  writeProvenance: true\n  # Reject proposals that would violate the SHACL shapes contract\n  # (broader/narrower cycles, conflicting labels).\n  validateGraph: true\n  # Also propose per-section metadata. Off by default: it costs more output per\n  # call, and section metadata is explicit-only, so review it as carefully.\n  sections: false\n\n# Local embeddings for semantic search (\\`manni graph embed\\`). Needs the optional\n# peer: npm install @huggingface/transformers\n# embed:\n#   model: onnx-community/granite-embedding-small-english-r2-ONNX\n#   dtype: q8            # q8 keeps embedding reproducible across platforms\n#   out: graph              # directory for the per-language vector sidecars\n#   cacheDir: .manni/graph/embed-cache\n\n# Optional enrichment for \\`manni graph export iirds\\` (the iiRDS package).\n# Absent, a minimal valid package is still produced.\n# export:\n#   iirds:\n#     title: My Docs        # package title (default: \"manni graph export\")\n#     creator: Acme Corp     # Creator iirds:Party + vcard:Organization\n#     version: \"1.3\"         # iiRDS version literal: \"1.2\" | \"1.3\"\n`;\n\n/** The starter as a `graph:` section: every line nested one level. */\nfunction starterSection(): string {\n  const body = STARTER.split(\"\\n\")\n    .map((line) => (line === \"\" ? \"\" : `  ${line}`))\n    .join(\"\\n\");\n  return `${CONFIG_SECTION}:\\n${body}`;\n}\n\nexport async function runInit(cwd = process.cwd()): Promise<string> {\n  const path = resolve(cwd, DEFAULT_CONFIG_FILENAME);\n  if (!existsSync(path)) {\n    await writeTextAtomic(path, `${HEADER}${starterSection()}`);\n    return path;\n  }\n\n  // A family file is already here. Parse it to make sure a `graph:` key can be\n  // appended: the document must be a mapping (or empty) without one.\n  const text = readFileSync(path, \"utf8\");\n  let doc: unknown;\n  try {\n    doc = parseYaml(text);\n  } catch (e) {\n    throw new GraphError(\n      `Invalid YAML in ${DEFAULT_CONFIG_FILENAME}: ${errorMessage(e)}`,\n    );\n  }\n  if (doc != null && (typeof doc !== \"object\" || Array.isArray(doc))) {\n    throw new GraphError(\n      `${DEFAULT_CONFIG_FILENAME}: top level must be a mapping — not adding a \\`${CONFIG_SECTION}:\\` section to it.`,\n    );\n  }\n  if (doc != null && Object.hasOwn(doc, CONFIG_SECTION)) {\n    throw new GraphError(\n      `${DEFAULT_CONFIG_FILENAME} already has a \\`${CONFIG_SECTION}:\\` section — not overwriting.`,\n    );\n  }\n  // Append as text rather than re-serialising the document, so the siblings'\n  // keys and comments come out byte-for-byte as they went in.\n  const separator = text === \"\" || text.endsWith(\"\\n\") ? \"\" : \"\\n\";\n  const blank = text === \"\" ? \"\" : \"\\n\";\n  await writeTextAtomic(\n    path,\n    `${text}${separator}${blank}${starterSection()}`,\n  );\n  return 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