@haste-health/fhirpath 0.12.2

package/lib/index.js

@@ -0,0 +1,481 @@
+import { R4 } from "@haste-health/fhir-types/versions";
+import * as metaUtils from "@haste-health/meta-value/utilities";
+import * as metaValueV2 from "@haste-health/meta-value/v2";
+import parse from "./parserv2/index.js";
+function flatten(arr) {
+    return arr.reduce((acc, v) => [...acc, ...v], []);
+}
+async function getVariableValue(variableId, options) {
+    let value;
+    if (options?.variables instanceof Function) {
+        value = await options.variables(variableId);
+    }
+    else if (options?.variables instanceof Object) {
+        value = options.variables[variableId];
+    }
+    return metaUtils.flatten(metaValueV2.metaValue({ fhirVersion: options.fhirVersion }, value));
+}
+function assert(assertion, message) {
+    if (!assertion) {
+        throw new Error(message || "Assertion failed");
+    }
+}
+// Problem is you can't distinguish an identifier vs typeidentifier so just check to confirm singular and only identifier present.
+function expressionToTypeIdentifier(ast) {
+    switch (ast.type) {
+        case "expression": {
+            if (ast.expression[0].type === "identifier") {
+                return ast.expression[0].value;
+            }
+            return undefined;
+        }
+        default: {
+            return undefined;
+        }
+    }
+}
+const fp_functions = {
+    // [EXISTENCE FUNCTIONS]
+    // Returns true if the input collection is empty ({ }) and false otherwise.
+    async exists(ast, context, options) {
+        if (ast.parameters.length === 1) {
+            return metaUtils.flatten(await metaValueV2.metaValue({ fhirVersion: options.fhirVersion, type: "boolean" }, (await _evaluate(ast.parameters[0], context, options)).length > 0));
+        }
+        return metaUtils.flatten(await metaValueV2.metaValue({ fhirVersion: options.fhirVersion, type: "boolean" }, context.length > 0));
+    },
+    // exists([criteria : expression]) : Boolean
+    async empty(ast, context, options) {
+        return metaUtils.flatten(await metaValueV2.metaValue({ fhirVersion: options.fhirVersion, type: "boolean" }, context.length === 0));
+    },
+    async all(ast, context, options) {
+        return metaUtils.flatten(await metaValueV2.metaValue({ fhirVersion: options.fhirVersion, type: "boolean" }, flatten(await Promise.all(context.map((v) => _evaluate(ast.parameters[0], [v], options))))
+            .map((v) => v.getValue())
+            .reduce((acc, v) => acc && v, true)));
+    },
+    async allTrue(ast, context, options) {
+        return metaUtils.flatten(await metaValueV2.metaValue({ fhirVersion: options.fhirVersion, type: "boolean" }, context.reduce((acc, v) => v.getValue() === true && acc, true)));
+    },
+    async anyTrue(ast, context, options) {
+        return metaUtils.flatten(await metaValueV2.metaValue({ fhirVersion: options.fhirVersion, type: "boolean" }, context.reduce((acc, v) => v.getValue() === true || acc, false)));
+    },
+    async allFalse(ast, context, options) {
+        return metaUtils.flatten(await metaValueV2.metaValue({ fhirVersion: options.fhirVersion, type: "boolean" }, context.reduce((acc, v) => v.getValue() === false && acc, true)));
+    },
+    async anyFalse(ast, context, options) {
+        return metaUtils.flatten(await metaValueV2.metaValue({ fhirVersion: options.fhirVersion, type: "boolean" }, context.reduce((acc, v) => v.getValue() === false || acc, false)));
+    },
+    async subsetOf(ast, context, options) {
+        const otherSet = await _evaluate(ast.parameters[0], context, options);
+        return metaUtils.flatten(await metaValueV2.metaValue({ fhirVersion: options.fhirVersion, type: "boolean" }, context.reduce((acc, v1) => acc &&
+            otherSet.find((v2) => {
+                return equalityCheck([v1], [v2]);
+            }) !== undefined, true)));
+    },
+    // Conceptionally this is the opposite of subsetOf.
+    async supersetOf(ast, context, options) {
+        const otherSet = await _evaluate(ast.parameters[0], context, options);
+        return metaUtils.flatten(await metaValueV2.metaValue({ fhirVersion: options.fhirVersion, type: "boolean" }, otherSet.reduce((acc, v1) => acc &&
+            context.find((v2) => {
+                return equalityCheck([v1], [v2]);
+            }) !== undefined, true)));
+    },
+    async count(_ast, context, options) {
+        return metaUtils.flatten(await metaValueV2.metaValue({ fhirVersion: options.fhirVersion, type: "integer" }, context.length));
+    },
+    async distinct(_ast, context) {
+        const map = context
+            .map((v) => [
+            JSON.stringify(v.getValue()),
+            v,
+        ])
+            .reduce((m, [k, v]) => {
+            m[k] = v;
+            return m;
+        }, {});
+        return Object.values(map);
+    },
+    async isDistinct(ast, context, options) {
+        const distinct = await fp_functions.distinct({ type: "function", functionName: "distinct", parameters: [] }, context, options);
+        return metaUtils.flatten(await metaValueV2.metaValue({ fhirVersion: options.fhirVersion, type: "boolean" }, context.length === distinct.length));
+    },
+    // [FILTER FUNCTIONS]
+    async where(ast, context, options) {
+        const criteria = ast.parameters[0];
+        const result = [];
+        for (const v of context) {
+            const evaluation = await _evaluate(criteria, [v], options);
+            assert(evaluation.length === 1, "where clause evaluation must evaluate to a single boolean.");
+            if (!typeChecking("boolean", evaluation)) {
+                throw new Error("Where clause criteria must evaluate to a boolean");
+            }
+            if (evaluation[0].getValue()) {
+                result.push(v);
+            }
+        }
+        return result;
+    },
+    /**
+     * Returns a collection with all immediate child nodes of all items in the input collection.
+     * Note that the ordering of the children is undefined and using functions like first() on the result may return different results on different platforms.
+     */
+    async children(_ast, context) {
+        const children = flatten(await Promise.all(context.map(async (node) => {
+            const children = flatten(await Promise.all(node.keys().map(async (k) => metaUtils.flatten(node.descend(k))))).filter((v) => v !== undefined);
+            return children;
+        })));
+        return children;
+    },
+    /**
+     * Returns a collection with all descendant nodes of all items in the input collection.
+     */
+    async descendants(_ast, context, options) {
+        return _evaluate(compileAST("repeat(children())"), context, options);
+    },
+    async select(ast, context, options) {
+        const selection = ast.parameters[0];
+        return flatten(await Promise.all(context.map((v) => {
+            return _evaluate(selection, [v], options);
+        })));
+    },
+    async repeat(ast, context, options) {
+        const projection = ast.parameters[0];
+        let endResult = [];
+        let cur = context;
+        while (cur.length !== 0) {
+            cur = await _evaluate(projection, cur, options);
+            endResult = [...endResult, ...cur];
+        }
+        return endResult;
+    },
+    // Type Functions
+    async ofType(ast, context) {
+        const parameters = ast.parameters;
+        const typeIdentifier = expressionToTypeIdentifier(parameters[0]);
+        if (!typeIdentifier)
+            throw new Error("Invalid Type identifier");
+        return filterByType(typeIdentifier, context);
+    },
+    async as(ast, context) {
+        assert(context.length <= 1, "as function must have a length of 1 for context.");
+        const parameters = ast.parameters;
+        const typeIdentifier = expressionToTypeIdentifier(parameters[0]);
+        if (!typeIdentifier)
+            throw new Error("Invalid Type identifier");
+        return filterByType(typeIdentifier, context);
+    },
+    async resolve(ast, context) {
+        // console.warn("not supporting resolve just returning item");
+        return context;
+    },
+    async replace(ast, context, options) {
+        if (ast.parameters.length !== 2) {
+            throw new Error("Replace function must have two arguments");
+        }
+        if (context.length !== 1) {
+            throw new Error("Replace function must have one context");
+        }
+        if (!typeChecking("string", context)) {
+            throw new Error("Replace function arguments must be strings");
+        }
+        const value = context[0].getValue();
+        const [findAST, replaceAST] = ast.parameters;
+        const findEval = await _evaluate(findAST, context, options);
+        const replaceEval = await _evaluate(replaceAST, context, options);
+        if (findEval.length !== 1 ||
+            replaceEval.length !== 1 ||
+            !typeChecking("string", findEval) ||
+            !typeChecking("string", replaceEval)) {
+            throw new Error("Replace function arguments must be strings");
+        }
+        const find = findEval[0].getValue();
+        const replace = replaceEval[0].getValue();
+        return metaUtils.flatten(await metaValueV2.metaValue(context[0].meta(), value.replace(find, replace)));
+    },
+    async type(ast, context, options) {
+        return flatten(context.map((c) => {
+            const meta = c.meta();
+            return metaUtils.flatten(metaValueV2.metaValue({ fhirVersion: options.fhirVersion }, 
+            //  { name: string, type: TypeSpecifier, isOneBased: Boolean }
+            {
+                name: c.location()?.pop(),
+                type: meta?.type,
+            }));
+        }));
+    },
+};
+async function evaluateInvocation(ast, context, options) {
+    switch (ast.type) {
+        case "index":
+            throw new Error("Not implemented");
+        case "total":
+            throw new Error("Not implemented");
+        case "this":
+            return context;
+        case "identifier": {
+            const res = (await Promise.all(context.map(async (v) => metaUtils.flatten(v.descend(ast.value))))).flat();
+            return res;
+        }
+        case "function": {
+            const fp_func = fp_functions[ast.functionName];
+            if (!fp_func)
+                throw new Error("Unknown function '" + ast.functionName + "'");
+            return fp_func(ast, context, options);
+        }
+        default: {
+            // @ts-ignore
+            throw new Error("Unknown invocation type: '" + ast.type + "'");
+        }
+    }
+}
+async function evaluateTerm(ast, context, options) {
+    switch (ast.type) {
+        case "function": {
+            const fp_func = fp_functions[ast.functionName];
+            if (!fp_func)
+                throw new Error("Unknown function '" + ast.functionName + "'");
+            return fp_func(ast, context, options);
+        }
+        case "expression":
+        case "operation": {
+            return _evaluate(ast, context, options);
+        }
+        case "literal": {
+            return metaUtils.flatten(await metaValueV2.metaValue({ fhirVersion: options.fhirVersion }, ast.value));
+        }
+        case "variable": {
+            return getVariableValue(ast.value, options);
+        }
+        case "identifier": {
+            // Special handling for type identifier at start for example Patient.name
+            const typeIdentifier = ast.value;
+            const result = filterByType(typeIdentifier, context);
+            if (result.length > 0)
+                return result;
+            else {
+                return evaluateInvocation(ast, context, options);
+            }
+        }
+        case "index":
+        case "this":
+        case "total": {
+            return evaluateInvocation(ast, context, options);
+        }
+        default: {
+            // @ts-ignore
+            throw new Error("Unknown term type: '" + ast.type + "'");
+        }
+    }
+}
+async function evaluateProperty(ast, context, options) {
+    switch (ast.type) {
+        case "identifier":
+        case "this":
+        case "total":
+        case "function":
+        case "index": {
+            return evaluateInvocation(ast, context, options);
+        }
+        case "indexed": {
+            const indexed = await _evaluate(ast.index, context, options);
+            if (indexed.length !== 1)
+                throw new Error("Indexing requires a single value");
+            if (!typeChecking("number", indexed))
+                throw new Error("Indexing requires a number");
+            const value = context[indexed[0].getValue()];
+            return value !== undefined ? [value] : [];
+        }
+        default: {
+            // @ts-ignore
+            throw new Error("Unknown term type: '" + ast.type + "'");
+        }
+    }
+}
+async function evaluateSingular(ast, context, options) {
+    let start = await evaluateTerm(ast.expression[0], context, options);
+    for (const next of ast.expression.slice(1)) {
+        start = await evaluateProperty(next, start, options);
+    }
+    return start;
+}
+function typeChecking(typeChecking, args) {
+    return args.reduce((acc, v) => {
+        if (typeof v.getValue() !== typeChecking)
+            return false;
+        return acc;
+    }, true);
+}
+export class InvalidOperandError extends Error {
+    args;
+    operator;
+    constructor(args, operator) {
+        super(`Invalid operands for operator: '${operator}' Found types '${typeof args[0]}' and '${typeof args[1]}'`);
+        this.args = args;
+        this.operator = operator;
+    }
+}
+function op_prevaled(operation_function) {
+    return async (ast, context, options) => {
+        const left = await _evaluate(ast.left, context, options);
+        const right = await _evaluate(ast.right, context, options);
+        return operation_function(left, right, options);
+    };
+}
+const equalityCheck = (left, right) => {
+    // TODO improve Deep Equals speed.
+    if (left.length !== right.length) {
+        return false;
+    }
+    else if (typeof left[0].getValue() === "object") {
+        return (JSON.stringify(left[0].getValue()) === JSON.stringify(right[0].getValue()));
+    }
+    return left[0].getValue() === right[0].getValue();
+};
+function filterByType(type, context) {
+    return context.map((v) => v.asType(type)).filter((v) => v !== undefined);
+}
+/**
+ * Check for membership of value in collection.
+ * Used for both in and contains (reversed).
+ * @param options FP Options
+ * @param collection Collection to check for membership
+ * @param value Value to check if exists in collection
+ * @returns MetaValue boolean value.
+ */
+function membershipCheck(options, collection, value) {
+    if (value.length !== 1) {
+        throw new Error("Membership check value must be a single value");
+    }
+    for (const colValue of collection) {
+        if (equalityCheck(value, [colValue])) {
+            return metaUtils.flatten(metaValueV2.metaValue({ fhirVersion: options.fhirVersion, type: "boolean" }, true));
+        }
+    }
+    return metaUtils.flatten(metaValueV2.metaValue({ fhirVersion: options.fhirVersion, type: "boolean" }, false));
+}
+const fp_operations = {
+    contains: op_prevaled(async (left, right, options) => {
+        return membershipCheck(options, left, right);
+    }),
+    in: op_prevaled(async (left, right, options) => {
+        return membershipCheck(options, right, left);
+    }),
+    "+": op_prevaled(async (left, right, options) => {
+        if (typeChecking("number", left) && typeChecking("number", right)) {
+            return metaUtils.flatten(await metaValueV2.metaValue({ fhirVersion: options.fhirVersion, type: "decimal" }, left[0].getValue() + right[0].getValue()));
+        }
+        else if (typeChecking("string", left) && typeChecking("string", right)) {
+            return metaUtils.flatten(await metaValueV2.metaValue({ fhirVersion: options.fhirVersion, type: "string" }, left[0].getValue() + right[0].getValue()));
+        }
+        else {
+            throw new InvalidOperandError([left[0], right[0]], "+");
+        }
+    }),
+    as: async (ast, context, options) => {
+        const left = await _evaluate(ast.left, context, options);
+        if (left.length > 1)
+            throw new Error("The 'as' operator left hand operand must be equal to length 1");
+        const typeIdentifier = expressionToTypeIdentifier(ast.right);
+        if (!typeIdentifier)
+            throw new Error("Invalid Type identifier");
+        return filterByType(typeIdentifier, left);
+    },
+    is: async (ast, context, options) => {
+        const left = await _evaluate(ast.left, context, options);
+        if (left.length > 1)
+            throw new Error("The 'is' operator left hand operand must be equal to length 1");
+        const typeIdentifier = expressionToTypeIdentifier(ast.right);
+        if (!typeIdentifier)
+            throw new Error("Invalid Type identifier");
+        return (await Promise.all(left.map(async (c) => {
+            return metaUtils.flatten(await metaValueV2.metaValue({ fhirVersion: options.fhirVersion, type: "boolean" }, c.isType(typeIdentifier)));
+        }))).flat();
+    },
+    "-": op_prevaled(async (left, right, options) => {
+        if (typeChecking("number", left) && typeChecking("number", right)) {
+            return metaUtils.flatten(await metaValueV2.metaValue({ fhirVersion: options.fhirVersion, type: "decimal" }, left[0].getValue() - right[0].getValue()));
+        }
+        else {
+            throw new InvalidOperandError([left[0], right[0]], "-");
+        }
+    }),
+    "*": op_prevaled(async (left, right, options) => {
+        if (typeChecking("number", left) && typeChecking("number", right)) {
+            return metaUtils.flatten(await metaValueV2.metaValue({ fhirVersion: options.fhirVersion, type: "decimal" }, left[0].getValue() * right[0].getValue()));
+        }
+        else {
+            throw new InvalidOperandError([left[0], right[0]], "*");
+        }
+    }),
+    "/": op_prevaled(async (left, right, options) => {
+        if (typeChecking("number", left) && typeChecking("number", right)) {
+            return metaUtils.flatten(await metaValueV2.metaValue({ fhirVersion: options.fhirVersion, type: "decimal" }, left[0].getValue() / right[0].getValue()));
+        }
+        else {
+            throw new InvalidOperandError([left[0], right[0]], "/");
+        }
+    }),
+    "|": op_prevaled(async (left, right) => {
+        return left.concat(right);
+    }),
+    and: op_prevaled(async (left, right, options) => {
+        if (typeChecking("boolean", left) && typeChecking("boolean", right)) {
+            return metaUtils.flatten(await metaValueV2.metaValue({ fhirVersion: options.fhirVersion, type: "boolean" }, left[0].getValue() && right[0].getValue()));
+        }
+        throw new InvalidOperandError([left[0], right[0]], "/");
+    }),
+    or: op_prevaled(async (left, right, options) => {
+        if (typeChecking("boolean", left) && typeChecking("boolean", right)) {
+            return metaUtils.flatten(await metaValueV2.metaValue({ fhirVersion: options.fhirVersion, type: "boolean" }, left[0].getValue() || right[0].getValue()));
+        }
+        throw new InvalidOperandError([left[0], right[0]], "/");
+    }),
+    "=": op_prevaled(async (left, right, options) => metaUtils.flatten(await metaValueV2.metaValue({ fhirVersion: options.fhirVersion, type: "boolean" }, equalityCheck(left, right)))),
+    "!=": op_prevaled(async (left, right, options) => {
+        const equality = equalityCheck(left, right);
+        return metaUtils.flatten(await metaValueV2.metaValue({ fhirVersion: options.fhirVersion, type: "boolean" }, equality === false));
+    }),
+};
+async function evaluateOperation(ast, context, options) {
+    const operator = fp_operations[ast.operator];
+    if (operator)
+        return operator(ast, context, options);
+    else
+        throw new Error("Unsupported operator: '" + ast.operator + "'");
+}
+async function _evaluate(ast, context, options) {
+    switch (ast.type) {
+        case "operation": {
+            return evaluateOperation(ast, context, options);
+        }
+        case "expression": {
+            return evaluateSingular(ast, context, options);
+        }
+        default: {
+            // @ts-ignore
+            throw new Error("Invalid AST Expression Node '" + ast.type + "'");
+        }
+    }
+}
+/**
+ * Because Primitive types could have undefined on .value do quick check here to confirm existence.
+ */
+function nonNullable(v) {
+    return v !== undefined && v !== null;
+}
+const cachedAST = {};
+function compileAST(expression) {
+    if (!cachedAST[expression]) {
+        const ast = parse(expression);
+        cachedAST[expression] = ast;
+    }
+    return cachedAST[expression];
+}
+export async function evaluateWithMeta(expression, ctx, options = { fhirVersion: R4 }) {
+    const ast = compileAST(expression);
+    const context = metaUtils.flatten(metaValueV2.metaValue({ fhirVersion: options.fhirVersion, type: options.type }, ctx));
+    return (await _evaluate(ast, context, options)).filter((v) => nonNullable(v.getValue()));
+}
+export async function evaluate(expression, ctx, options) {
+    return (await evaluateWithMeta(expression, ctx, options)).map((v) => v.getValue());
+}
+//# sourceMappingURL=index.js.map

package/lib/index.js.map

@@ -0,0 +1 @@
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package/lib/parserv2/index.d.ts

@@ -0,0 +1,2 @@
+import { ExpressionAST } from "./types.js";
+export default function parse(expression: string): ExpressionAST;