@harperfast/harper 5.2.1 → 5.2.2

package/dist/utility/lmdb/environmentUtility.js.map

@@ -1 +1 @@
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package/npm-shrinkwrap.json

@@ -1,12 +1,12 @@
 {
   "name": "harper",
-  "version": "5.2.1",
+  "version": "5.2.2",
   "lockfileVersion": 3,
   "requires": true,
   "packages": {
     "": {
       "name": "harper",
-      "version": "5.2.1",
+      "version": "5.2.2",
       "license": "Apache-2.0",
       "dependencies": {
         "@aws-sdk/client-s3": "^3.1012.0",
@@ -30,7 +30,7 @@
         "@turf/length": "6.5.0",
         "alasql": "4.17.3",
         "amaro": "^1.1.8",
-        "argon2": "0.44.0",
+        "argon2": "0.45.1",
         "asn1js": "3.0.10",
         "busboy": "^1.6.0",
         "cbor-x": "1.6.4",
@@ -1937,13 +1937,15 @@
       }
     },
     "node_modules/argon2": {
-      "version": "0.44.0",
+      "version": "0.45.1",
+      "resolved": "https://registry.npmjs.org/argon2/-/argon2-0.45.1.tgz",
+      "integrity": "sha512-skm+/WCjkGqCQxF7FG1LuZXM5yvbFjgbfiCGsud2oLgaDhh6b6dbH0b1EkghbM+xx4Bj8Ape+KKgixoIlWZicQ==",
       "hasInstallScript": true,
       "license": "MIT",
       "dependencies": {
         "@phc/format": "^1.0.0",
-        "cross-env": "^10.0.0",
-        "node-addon-api": "^8.5.0",
+        "cross-env": "^10.1.0",
+        "node-addon-api": "^8.9.0",
         "node-gyp-build": "^4.8.4"
       },
       "engines": {
@@ -1952,6 +1954,8 @@
     },
     "node_modules/argon2/node_modules/node-gyp-build": {
       "version": "4.8.4",
+      "resolved": "https://registry.npmjs.org/node-gyp-build/-/node-gyp-build-4.8.4.tgz",
+      "integrity": "sha512-LA4ZjwlnUblHVgq0oBF3Jl/6h/Nvs5fzBLwdEF4nuxnFdsfajde4WfxtJr3CaiH+F6ewcIB/q4jQ4UzPyid+CQ==",
       "license": "MIT",
       "bin": {
         "node-gyp-build": "bin.js",
@@ -4082,7 +4086,9 @@
       }
     },
     "node_modules/node-addon-api": {
-      "version": "8.6.0",
+      "version": "8.9.1",
+      "resolved": "https://registry.npmjs.org/node-addon-api/-/node-addon-api-8.9.1.tgz",
+      "integrity": "sha512-4eUQWVPCUUUiBjLnHS3cXWeC6ryoPUc0U3rP7IuzapoGbzMqd/r6KKO0clr0b+snQhsrueFEhCZDdK+LK7hxKg==",
       "license": "MIT",
       "engines": {
         "node": "^18 || ^20 || >= 21"

package/package.json

@@ -1,7 +1,7 @@
 {
 	"name": "@harperfast/harper",
 	"description": "Harper is an open-source Node.js performance platform that unifies database, cache, application, and messaging layers into one in-memory process.",
-	"version": "5.2.1",
+	"version": "5.2.2",
 	"license": "Apache-2.0",
 	"homepage": "https://harper.fast",
 	"bugs": {
@@ -192,7 +192,7 @@
 		"@turf/length": "6.5.0",
 		"alasql": "4.17.3",
 		"amaro": "^1.1.8",
-		"argon2": "0.44.0",
+		"argon2": "0.45.1",
 		"asn1js": "3.0.10",
 		"busboy": "^1.6.0",
 		"cbor-x": "1.6.4",

package/resources/DESIGN.md

@@ -94,6 +94,7 @@ One giant `makeTable()` factory that returns a `TableResource extends Resource`
 | How does a URL path map to a Resource?                                | `Resources.ts → getMatch` (exact/prefix fast path) then `matchParamRoute` (parameterised routes); see "Path routing" below                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              |
 | How does HNSW keep the graph connected on delete?                     | `indexes/HierarchicalNavigableSmallWorld.ts → index()` delete path: zero-degree orphans reindexed via `needsReindexing`; severed multi-node islands detected and reconnected by `repairSeveredNeighbors` (#1712)                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        |
 | How is a filter applied _during_ a vector search?                     | Predicate-aware traversal (#1241): `search.ts → executeConditions` composes companion AND conditions with request `vectorFilter` / `rowFilter` predicates into one `(primaryKey) => boolean` (`composeRecordFilter`) and passes it to `HierarchicalNavigableSmallWorld.search(cond, ctx, filter)`. The filter gates result admission at layer 0 only (routing ignores it, ACORN-style); a visit budget (`filterExpansion`) bounds the under-filled/selective case. Very selective _condition_ filters are instead diverted to the exact brute-force path by the query planner's `estimateCountAsSort` ordering.                                                                                                                                         |
+| How does post-ordering resolve vector distances safely?               | Each comparator owns its `Sort`, passes it directly to the custom-index resolver, and caches distances by that immutable per-query sort object.                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         |
 | How is application row filtering applied?                             | Authorization admission happens in the resource operation before query work. The legacy `allow*` hook, when armed by the protocol, is evaluated once with its historical receiver semantics; overriding it never changes its scope. An operation override may add indexed conditions and/or attach the JavaScript-only synchronous `target.rowFilter(record, context)`. `Table.search` composes it with query filters and rechecks the final materialized cache/source record. `SubscriptionRequest.rowFilter` covers full-row events; `eventFilter(event, context)` explicitly handles tombstones/messages/raw events. Prefer indexed conditions because an opaque predicate may inspect every admitted candidate and `limit` applies after filtering. |
 
 **QUERY admission uses the body projection.** `Resource.transactional` resolves an asynchronous HTTP QUERY body before resource resolution, recursively clones away client-supplied `checkPermission`, and copies the body's `select` onto the operation admission target before `allowRead`. After authorization, `Resource.query` transfers only the narrowed projection to the body target. This ensures a body-only relationship select is checked before `Table.search`; permission-control fields from QUERY data must never reach a search target.

package/resources/DatabaseTransaction.ts

@@ -335,6 +335,7 @@ export class DatabaseTransaction implements Transaction {
 	// link with no writes that is being read in a loop would otherwise masquerade as write activity and
 	// keep a write-holding head immortal.
 	declare writeTimeout: number;
+	timeoutBudget = 0;
 	validated = 0;
 	timestamp = 0;
 	retries = 0;
@@ -385,7 +386,7 @@ export class DatabaseTransaction implements Transaction {
 		// `writes`/`next` are checked inline first: this is a hot path and the dominant case is a
 		// single-store transaction that has never written.
 		if ((this.writes.length === 0 && !this.next) || this.open !== TRANSACTION_STATE.OPEN || !this.hasPendingWrites()) {
-			this.timeout = txnExpiration;
+			this.timeout = Math.max(txnExpiration, this.timeoutBudget);
 		}
 		if (this.transaction) {
 			if ((this.transaction as any).openTimer) (this.transaction as any).openTimer = 0;
@@ -578,10 +579,10 @@ export class DatabaseTransaction implements Transaction {
 		// A write is activity: it re-arms the idle limit on this link even though the reads it
 		// performs no longer do (see getReadTxn), so a transaction that keeps writing stays alive
 		// and only an idle one holding write intents is reaped.
-		this.timeout = txnExpiration;
+		this.timeout = Math.max(txnExpiration, this.timeoutBudget ?? 0);
 		// Independent write-recency signal for chainStillActive (see the field comment) — reads never
 		// touch this, only writes do.
-		this.writeTimeout = txnExpiration;
+		this.writeTimeout = this.timeout;
 		this.linkWrite(operation);
 		this.writes.push(operation);
 		if (!operation.deferSave) {
@@ -1107,6 +1108,7 @@ export interface CommitResolution {
 	next?: CommitResolution;
 }
 export interface Transaction {
+	timeoutBudget?: number;
 	commit(options): MaybePromise<CommitResolution>;
 	abort?(): any;
 }
@@ -1190,7 +1192,7 @@ function startMonitoringTxns() {
 					// receives them, and a multi-store transaction can be writing database B while this
 					// head only reads A). The logical transaction is still active, so re-arm this link
 					// rather than aborting the whole chain out from under it.
-					txn.timeout = txnExpiration;
+					txn.timeout = Math.max(txnExpiration, txn.timeoutBudget ?? 0);
 				} else if (txn.hasPendingWrites() && !txn.sourceApply && !txn.isReplay) {
 					// Abort and surface an error rather than force-committing a partial write set: silently
 					// committing on the application's behalf breaks atomicity and can leave orphaned
@@ -1226,7 +1228,7 @@ function startMonitoringTxns() {
 					} catch (error) {
 						harperLogger.debug?.(`Error committing timed out transaction: ${error.message}`);
 					}
-					txn.timeout = txnExpiration;
+					txn.timeout = Math.max(txnExpiration, txn.timeoutBudget ?? 0);
 				}
 			} else {
 				txn.timeout -= txnExpiration;

package/resources/Table.ts

@@ -389,6 +389,7 @@ export function makeTable(options) {
 	if (!attributes) attributes = [];
 	if (!properties) properties = projectAttributesToProperties(attributes);
 	const updateRecord = recordUpdater(primaryStore, tableId, auditStore);
+	let warnedNullSourcePut = false; // latched: one warn per table per worker (see _writeUpdate)
 	let sourceLoad: any; // if a source has a load function (replicator), record it here
 	let hasSourceGet: any;
 	let primaryKeyAttribute: Attribute | undefined;
@@ -2236,6 +2237,22 @@ export function makeTable(options) {
 			const context = this.getContext();
 			const transaction = txnForContext(context);
 			checkValidId(id);
+			if (fullUpdate && recordUpdate == null && options?.isNotification) {
+				// A source/replication-applied put must carry the record; these applies skip record
+				// validation, so this is the one path a nullish full update reaches (isNotification scopes
+				// this to the apply dispatcher, not instance flows that fill from #changes). Applying it
+				// stores nothing and mints an audit-only entry misrepresenting the write (#2153) — skip it;
+				// a redelivery re-skips and a later real write supersedes.
+				logger.trace?.('Skipped valueless source put', tableName, id, options?.nodeId);
+				if (!warnedNullSourcePut) {
+					warnedNullSourcePut = true;
+					logger.warn?.(
+						`Skipping a source-applied put with no record content for ${tableName} id ${id} from node ${options?.nodeId}`,
+						new Error('valueless source put')
+					);
+				}
+				return;
+			}
 			const entry = this.#entry ?? primaryStore.getEntry(id, { transaction: transaction.getReadTxn() });
 			const writeToSource = () => {
 				if (!(this.constructor as any).source || (context as any)?.source) return;
@@ -3346,6 +3363,11 @@ export function makeTable(options) {
 			const operator = target.operator;
 			if (conditions.length > 0 || operator) conditions = prepareConditions(conditions, operator);
 			const sort = typeof target.sort === 'object' && target.sort;
+			for (let order = sort; order; order = order.next) {
+				if (typeof order.attribute !== 'string') continue;
+				const customIndex = indices[order.attribute]?.customIndex;
+				if (customIndex?.exactDistance) customIndex.exactDistance(order, null);
+			}
 			let postOrdering;
 			if (sort) {
 				// TODO: Support index-assisted sorts of unions, which will require potentially recursively adding/modifying an order aligned condition and be able to recursively undo it if necessary
@@ -3393,9 +3415,12 @@ export function makeTable(options) {
 					if (sort.next) {
 						postOrdering = {
 							dbOrderedAttribute: sort.attribute,
+							dbOrderedSort: sort,
 							attribute: sort.next.attribute,
 							descending: sort.next.descending,
 							next: sort.next.next,
+							target: (sort.next as any).target,
+							distance: (sort.next as any).distance,
 						};
 					}
 				} else {
@@ -3477,7 +3502,8 @@ export function makeTable(options) {
 				ensure_loaded,
 				true,
 				boundRowFilter,
-				includeExpired
+				includeExpired,
+				postOrdering
 			);
 			let results = TableResource.transformToOrderedSelect(
 				entries,
@@ -3538,10 +3564,9 @@ export function makeTable(options) {
 					function createComparator(order: Sort) {
 						const nextComparator = order.next && createComparator(order.next);
 						const descending = order.descending;
-						(context as any).sort = order; // make sure this is set to the current sort order
 						return (entryA, entryB) => {
-							const a = getAttributeValue(entryA, order.attribute, context);
-							const b = getAttributeValue(entryB, order.attribute, context);
+							const a = getAttributeValue(entryA, order.attribute, context, order);
+							const b = getAttributeValue(entryB, order.attribute, context, order);
 							const diff = descending
 								? compareKeys(convertToComparableKeys(b), convertToComparableKeys(a))
 								: compareKeys(convertToComparableKeys(a), convertToComparableKeys(b));
@@ -3582,7 +3607,12 @@ export function makeTable(options) {
 									// if the index has already provided the first order of sorting, we only need to sort
 									// within each grouping
 									if (dbOrderedAttribute) {
-										const groupingValue = getAttributeValue(entry, dbOrderedAttribute, context);
+										const groupingValue = getAttributeValue(
+											entry,
+											dbOrderedAttribute,
+											context,
+											(sort as any).dbOrderedSort
+										);
 										if (firstEntry) {
 											firstEntry = false;
 											lastGroupingValue = groupingValue;
@@ -3681,6 +3711,7 @@ export function makeTable(options) {
 		 * authorization verdict can't be made on bytes that differ from what the caller receives.
 		 * @param includeExpired when true, a row past its TTL but not yet swept is treated as a live
 		 * match rather than gone (used by the SQL engine's UPDATE/DELETE row-finder).
+		 * @param sort post-ordering owned by this selection
 		 * @returns
 		 */
 		static transformEntryForSelect(
@@ -3691,7 +3722,8 @@ export function makeTable(options) {
 			ensure_loaded?,
 			canSkip?,
 			rowFilter?,
-			includeExpired?
+			includeExpired?,
+			sort?
 		) {
 			let checkLoaded;
 			if (
@@ -3767,7 +3799,7 @@ export function makeTable(options) {
 						swrResource.setRecord(record);
 						const loadingFromSource = ensureLoadedFromSource(source, entry.key ?? entry, entry, context, swrResource);
 						if (loadingFromSource?.then) {
-							return loadingFromSource.then(transform);
+							return loadingFromSource.then(transform.bind(this));
 						}
 					}
 				}
@@ -3797,7 +3829,7 @@ export function makeTable(options) {
 									value = filterMap.fromRecord?.(record);
 								}
 							} else {
-								value = resolver(record, context, entry, true);
+								value = resolver(record, context, entry, true, sort);
 							}
 							const handleResolvedValue = (value: any) => {
 								if (resolver.directReturn) return callback(value, attribute_name);
@@ -3819,7 +3851,11 @@ export function makeTable(options) {
 											context,
 											targetReadTxn,
 											filterMap,
-											ensure_loaded
+											ensure_loaded,
+											undefined,
+											undefined,
+											undefined,
+											typeof attribute.sort === 'object' && attribute.sort
 										));
 									if (Array.isArray(value)) {
 										const results = [];
@@ -4871,8 +4907,24 @@ export function makeTable(options) {
 				$updatedTime: (object, context, entry) => entry.version,
 				$expiresAt: (object, context, entry) => entry.expiresAt,
 				$record: (object, context, entry) => (entry ? { value: object } : object),
-				$distance: (object, context, entry) => {
-					return entry && (entry.distance ?? context?.vectorDistances?.get(entry));
+				$distance: (object, context, entry, returnEntry, sort) => {
+					if (!entry) return;
+					if (entry.distance !== undefined) return entry.distance;
+					let distanceSort = sort;
+					while (
+						distanceSort &&
+						(typeof distanceSort.attribute !== 'string' ||
+							!Array.isArray(distanceSort.target) ||
+							!indices[distanceSort.attribute]?.customIndex?.propertyResolver)
+					)
+						distanceSort = distanceSort.next;
+					if (!distanceSort) return;
+					const customIndex = indices[distanceSort.attribute].customIndex;
+					const vector = object[distanceSort.attribute];
+					const distanceCache = context?.vectorDistanceCaches?.get(distanceSort);
+					const cachedDistance = distanceCache?.get(entry) ?? distanceCache?.get(vector);
+					if (cachedDistance !== undefined) return cachedDistance;
+					return customIndex.propertyResolver(vector, context, entry, distanceSort);
 				},
 			};
 			for (const attribute of this.attributes) {
@@ -5020,9 +5072,14 @@ export function makeTable(options) {
 					attribute.resolve.directReturn = true;
 				} else if (indices[attribute.name]?.customIndex?.propertyResolver) {
 					const customIndex = indices[attribute.name].customIndex;
-					propertyResolvers[attribute.name] = (object, context, entry) => {
+					propertyResolvers[attribute.name] = (object, context, entry, returnEntry, sort, comparing) => {
 						const value = object[attribute.name];
-						return customIndex.propertyResolver(value, context, entry);
+						const sortAttribute = sort?.attribute;
+						const resolvesSort =
+							comparing === true &&
+							(sortAttribute === attribute.name ||
+								(Array.isArray(sortAttribute) && sortAttribute[sortAttribute.length - 1] === attribute.name));
+						return customIndex.propertyResolver(value, context, entry, resolvesSort ? sort : undefined);
 					};
 					propertyResolvers[attribute.name].directReturn = true;
 				}
@@ -5557,6 +5614,7 @@ export function makeTable(options) {
 					// Inherit never-drop-on-conflict so a source-applied multi-store transaction doesn't
 					// drop the canonical write when a secondary store hits a transient conflict.
 					transaction.next.sourceApply = transaction.sourceApply;
+					transaction.next.timeoutBudget = transaction.timeoutBudget;
 					// Inherit the replay marker so a multi-table replay transaction skips validation on
 					// every store, not just the first (harper#1316).
 					transaction.next.isReplay = transaction.isReplay;
@@ -5588,7 +5646,7 @@ export function makeTable(options) {
 			return transaction;
 		}
 	}
-	function getAttributeValue(entry, attribute_name, context) {
+	function getAttributeValue(entry, attribute_name, context, sort?) {
 		if (!entry) {
 			return;
 		}
@@ -5600,14 +5658,17 @@ export function makeTable(options) {
 			for (let i = 0, l = attribute_name.length; i < l; i++) {
 				const attribute = attribute_name[i];
 				const resolver = resolvers?.[attribute];
-				value = resolver && value ? resolver(value, context, entry) : value?.[attribute];
+				value =
+					resolver && value
+						? resolver(value, context, entry, false, i === l - 1 ? sort : undefined, true)
+						: value?.[attribute];
 				entry = null; // can't use this in the nested object
 				resolvers = resolver?.definition?.tableClass?.propertyResolvers;
 			}
 			return value;
 		}
 		const resolver = propertyResolvers[attribute_name];
-		return resolver ? resolver(record, context, entry) : record[attribute_name];
+		return resolver ? resolver(record, context, entry, false, sort, true) : record[attribute_name];
 	}
 	function transformToEntries(ids, select, context, readTxn, filters?) {
 		// TODO: Test and ensure that we break out of these loops when a connection is lost

package/resources/auditStore.ts

@@ -111,6 +111,10 @@ const MAX_DELETES_PER_CLEANUP = 1000;
 // setTimeout silently falls back to 1ms for delays past this, which would turn the backoff into the
 // hot loop it is meant to avoid — a `logging.auditRetention` over ~248 days reaches it via retention/10
 const MAX_CLEANUP_DELAY = 2 ** 31 - 1;
+// separate mint/read latches so a legacy-entry read warn can't mask the still-minting signal;
+// mint latch keyed per (table, type) so one entry type can't silence another's producer stack
+const warnedBodylessMints = new Set<string>();
+const warnedBodylessTables = new Set<number>();
 const FLOAT_TARGET = new Float64Array(1);
 const FLOAT_BUFFER = new Uint8Array(FLOAT_TARGET.buffer);
 let DEFAULT_AUDIT_CLEANUP_DELAY = 10000; // default delay of 10 seconds
@@ -416,10 +420,24 @@ export function createAuditEntry(auditRecord: AuditRecord, start = 0) {
 		originatingOperation,
 		previousAdditionalAuditRefs,
 	} = auditRecord;
-	const action = EVENT_TYPES[type];
+	let action = EVENT_TYPES[type];
 	if (!action) {
 		throw new Error(`Invalid audit entry type ${type}`);
 	}
+	if (action & (HAS_RECORD | HAS_PARTIAL_RECORD) && !encodedRecord?.length) {
+		// Readers decode the remainder whenever HAS_RECORD is set, so an audit-only commit minted with
+		// no body must not advertise one (#2153). HAS_PARTIAL_RECORD is kept: it also drives
+		// record-history reconstruction, and the read path tolerates the empty body.
+		if (!warnedBodylessMints.has(`${tableId}:${type}`)) {
+			warnedBodylessMints.add(`${tableId}:${type}`);
+			// the Error's stack identifies which write path delivered the missing value
+			harperLogger.warn(
+				`Audit entry (${type}) for record ${recordId} in table ${tableId} has no record body`,
+				new Error('bodyless audit mint')
+			);
+		}
+		action &= ~HAS_RECORD;
+	}
 	let position = start + 1;
 	if (previousVersion) {
 		if (previousVersion > 1) ENTRY_DATAVIEW.setFloat64(start, previousVersion);
@@ -621,6 +639,19 @@ export function readAuditEntry(buffer: Uint8Array, start = 0, end = undefined):
 			},
 			getValue(store, fullRecord?, auditTime?) {
 				if (action & HAS_RECORD || (action & HAS_PARTIAL_RECORD && !fullRecord)) {
+					if (decoder.position >= (end ?? buffer.byteLength)) {
+						// Entry advertises a record but has no body (minted before #2153): nothing to decode, and
+						// return undefined rather than falling through — this branch means the caller asked for the
+						// entry's own content (full-record consumers with an auditTime never enter it for partials
+						// and still reconstruct below). Warn latched per table: this getter runs inside range scans.
+						if (!warnedBodylessTables.has(tableId)) {
+							warnedBodylessTables.add(tableId);
+							harperLogger.warn(
+								`Audit entry (${EVENT_TYPES[action & 0xf]}) for table ${tableId} advertises a record but has no body; treating as having no record`
+							);
+						}
+						return;
+					}
 					if (!value) {
 						value = decodeFromDatabase(
 							// the audit value has no on-disk timestamp/metadata prefix (the audit entry carries