@harperfast/harper 5.0.25 → 5.0.26

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Files changed (23) hide show
  1. package/dist/resources/RocksTransactionLogStore.js +44 -26
  2. package/dist/resources/RocksTransactionLogStore.js.map +1 -1
  3. package/dist/resources/Table.js +52 -6
  4. package/dist/resources/Table.js.map +1 -1
  5. package/dist/resources/auditStore.d.ts +11 -0
  6. package/dist/resources/auditStore.js +13 -0
  7. package/dist/resources/auditStore.js.map +1 -1
  8. package/dist/resources/replayLogs.js +19 -0
  9. package/dist/resources/replayLogs.js.map +1 -1
  10. package/package.json +2 -2
  11. package/resources/RocksTransactionLogStore.ts +44 -26
  12. package/resources/Table.ts +60 -11
  13. package/resources/auditStore.ts +13 -0
  14. package/resources/replayLogs.ts +20 -0
  15. package/studio/web/assets/{index-CmtPP0YO.js → index-tpQxqcfB.js} +5 -5
  16. package/studio/web/assets/{index-CmtPP0YO.js.map → index-tpQxqcfB.js.map} +1 -1
  17. package/studio/web/assets/{index.lazy-C8jvGtlu.js → index.lazy-Cr82BZoJ.js} +2 -2
  18. package/studio/web/assets/{index.lazy-C8jvGtlu.js.map → index.lazy-Cr82BZoJ.js.map} +1 -1
  19. package/studio/web/assets/{profile-O0DYlJUv.js → profile-CfwQpiKM.js} +2 -2
  20. package/studio/web/assets/{profile-O0DYlJUv.js.map → profile-CfwQpiKM.js.map} +1 -1
  21. package/studio/web/assets/{status-BIlJkJby.js → status-fDIUHt_X.js} +2 -2
  22. package/studio/web/assets/{status-BIlJkJby.js.map → status-fDIUHt_X.js.map} +1 -1
  23. package/studio/web/index.html +1 -1
package/dist/resources/auditStore.d.ts CHANGED
@@ -1,3 +1,4 @@
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+ import { RocksDatabase } from '@harperfast/rocksdb-js';
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  export type AuditRecord = {
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  version?: number;
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  localTime?: number;
@@ -43,6 +44,16 @@ export declare function openAuditStore(rootStore: any): any;
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  export declare function removeAuditEntry(auditStore: any, auditRecord: AuditRecord): Promise<void>;
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  export declare function getLastRemoved(auditStore: any): number;
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  export declare function setAuditRetention(retentionTime: any, defaultDelay?: number): void;
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+ /**
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+ * One-shot purge of transaction-log files already older than the audit retention window,
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+ * intended to run during startup/recovery before transaction-log replay. The steady-state
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+ * cleanup loop (scheduleAuditCleanup) only starts once a worker reaches steady state, so a node
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+ * that crash-loops during recovery never purges and its aged backlog only grows, enlarging the
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+ * next replay/full-copy. Safe to run before replay: the native purge only deletes log files
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+ * entirely before the last-flushed-to-RocksDB position, so unflushed entries that replay still
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+ * needs are never removed. Returns the names of the purged files. See harper#1115.
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+ */
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+ export declare function purgeAgedLogs(rootStore: RocksDatabase): string[];
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  export declare const ACTION_32_BIT = 14;
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  export declare const ACTION_64_BIT = 15;
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  /** Used to indicate we have received a remote local time update */
package/dist/resources/auditStore.js CHANGED
@@ -38,6 +38,7 @@ exports.openAuditStore = openAuditStore;
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  exports.removeAuditEntry = removeAuditEntry;
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  exports.getLastRemoved = getLastRemoved;
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  exports.setAuditRetention = setAuditRetention;
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+ exports.purgeAgedLogs = purgeAgedLogs;
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  exports.createAuditEntry = createAuditEntry;
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  exports.readAuditEntry = readAuditEntry;
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  const ordered_binary_1 = require("ordered-binary");
@@ -276,6 +277,18 @@ function setAuditRetention(retentionTime, defaultDelay = DEFAULT_AUDIT_CLEANUP_D
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  exports.auditRetention = retentionTime;
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  DEFAULT_AUDIT_CLEANUP_DELAY = defaultDelay;
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  }
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+ /**
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+ * One-shot purge of transaction-log files already older than the audit retention window,
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+ * intended to run during startup/recovery before transaction-log replay. The steady-state
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+ * cleanup loop (scheduleAuditCleanup) only starts once a worker reaches steady state, so a node
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+ * that crash-loops during recovery never purges and its aged backlog only grows, enlarging the
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+ * next replay/full-copy. Safe to run before replay: the native purge only deletes log files
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+ * entirely before the last-flushed-to-RocksDB position, so unflushed entries that replay still
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+ * needs are never removed. Returns the names of the purged files. See harper#1115.
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+ */
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+ function purgeAgedLogs(rootStore) {
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+ return rootStore.purgeLogs({ before: Date.now() - exports.auditRetention });
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+ }
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  const HAS_RECORD = 16;
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  const HAS_PARTIAL_RECORD = 32; // will be used for CRDTs
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  const PUT = 1;
package/dist/resources/auditStore.js.map CHANGED
@@ -1 +1 @@
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package/dist/resources/replayLogs.js CHANGED
@@ -40,6 +40,7 @@ const DatabaseTransaction_ts_1 = require("./DatabaseTransaction.js");
40
40
  const node_worker_threads_1 = require("node:worker_threads");
41
41
  const RequestTarget_ts_1 = require("./RequestTarget.js");
42
42
  const replayLogsGuards_ts_1 = require("./replayLogsGuards.js");
43
+ const auditStore_ts_1 = require("./auditStore.js");
43
44
  let warnedReplayHappening = false;
44
45
  function replayLogs(rootStore, tables) {
45
46
  if (!node_worker_threads_1.isMainThread)
@@ -50,6 +51,24 @@ function replayLogs(rootStore, tables) {
50
51
  });
51
52
  if (!acquired)
52
53
  return;
54
+ // Shed transaction-log files already older than the audit retention window before
55
+ // replaying. A node that crash-loops during recovery never reaches the steady-state
56
+ // cleanup loop, so without this its aged backlog only grows and enlarges each subsequent
57
+ // replay/full-copy. The native purge keeps any file holding unflushed entries, so this
58
+ // never drops data the replay below still needs. See harper#1115.
59
+ // Purging is a non-critical optimization, so a purge failure (filesystem/permission/native
60
+ // error) must never block the critical replay path that follows — especially here, during
61
+ // the recovery this fix is meant to harden.
62
+ let purgedLogs = [];
63
+ try {
64
+ purgedLogs = (0, auditStore_ts_1.purgeAgedLogs)(rootStore);
65
+ }
66
+ catch (error) {
67
+ logger.warn(`Failed to purge aged transaction logs before replay in ${rootStore.databaseName} database`, error);
68
+ }
69
+ if (purgedLogs.length > 0) {
70
+ logger.info(`Purged ${purgedLogs.length} aged transaction-log file(s) before replay in ${rootStore.databaseName} database`);
71
+ }
53
72
  const tableById = new Map();
54
73
  for (const tableName in tables) {
55
74
  const table = tables[tableName];
package/dist/resources/replayLogs.js.map CHANGED
@@ -1 +1 @@
1
- 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package/package.json CHANGED
@@ -1,7 +1,7 @@
1
1
  {
2
2
  "name": "@harperfast/harper",
3
3
  "description": "Harper is an open-source Node.js performance platform that unifies database, cache, application, and messaging layers into one in-memory process.",
4
- "version": "5.0.25",
4
+ "version": "5.0.26",
5
5
  "license": "Apache-2.0",
6
6
  "homepage": "https://harper.fast",
7
7
  "bugs": {
@@ -163,7 +163,7 @@
163
163
  "@fastify/cors": "^11.2.0",
164
164
  "@fastify/static": "^9.1.3",
165
165
  "@harperfast/extended-iterable": "^1.0.1",
166
- "@harperfast/rocksdb-js": "^1.4.1",
166
+ "@harperfast/rocksdb-js": "^1.4.2",
167
167
  "@turf/area": "6.5.0",
168
168
  "@turf/boolean-contains": "6.5.0",
169
169
  "@turf/boolean-disjoint": "6.5.0",
package/resources/RocksTransactionLogStore.ts CHANGED
@@ -236,35 +236,53 @@ export class RocksTransactionLogStore extends EventEmitter {
236
236
 
237
237
  aggregateIterator = {
238
238
  next() {
239
- if (nextEntries.length === 0) {
240
- // on the first iteration and any time we finished all the iterators, we re-retrieve all
241
- // the next entries (in case we are resuming after being done)
242
- updateIterators();
243
- }
244
- let earliest: TransactionEntry;
245
- let earliestIndex = -1;
246
- for (let i = 0; i < nextEntries.length; i++) {
247
- const result = nextEntries[i];
248
- // skip any that are done
249
- if (result.done) {
250
- continue;
239
+ // We get up to two passes: the normal find-earliest pass, plus one retry that
240
+ // forces nextEntries.length = 0 to re-poll every per-log iterator (each picks
241
+ // up new entries when its log file has grown since the last `.next()` returned
242
+ // done) and to let updateIterators pick up any new logs added since the last
243
+ // call (e.g. a peer's log created by replication). Without the retry, a
244
+ // `{ done: true }` slot in nextEntries carried over from a previous call
245
+ // persists across a burst of commits that all coalesce into a single
246
+ // notifyFromTransactionData wake-up — the find-earliest loop keeps skipping
247
+ // the stale done slot, never re-polls the underlying iterator, and the entire
248
+ // burst is silently dropped (no further 'committed' arrives to unstick us).
249
+ // This was the fingerprint of the cloneNode topology bug where peer rows
250
+ // landed in hdb_nodes via system-DB replication but subscribeToNodeUpdates
251
+ // never received the events, so onNodeUpdate never opened replication
252
+ // connections to those peers.
253
+ for (let attempt = 0; attempt < 2; attempt++) {
254
+ if (nextEntries.length === 0) {
255
+ // on the first iteration and any time we finished all the iterators,
256
+ // we re-retrieve all the next entries (in case we are resuming after
257
+ // being done)
258
+ updateIterators();
259
+ }
260
+ let earliest: TransactionEntry;
261
+ let earliestIndex = -1;
262
+ for (let i = 0; i < nextEntries.length; i++) {
263
+ const result = nextEntries[i];
264
+ // skip any that are done
265
+ if (result.done) {
266
+ continue;
267
+ }
268
+ // find the earliest one that is not done
269
+ const next = result.value;
270
+ if (!earliest || earliest.timestamp > next.timestamp) {
271
+ earliest = next;
272
+ earliestIndex = i;
273
+ }
251
274
  }
252
- // find the earliest one that is not done
253
- const next = result.value;
254
- if (!earliest || earliest.timestamp > next.timestamp) {
255
- earliest = next;
256
- earliestIndex = i;
275
+ if (earliestIndex >= 0) {
276
+ // replace the entry with the next one from the iterator we pulled from
277
+ nextEntries[earliestIndex] = iterators[earliestIndex].next();
278
+ return {
279
+ value: onlyKeys ? earliest.timestamp : earliest,
280
+ done: false,
281
+ };
257
282
  }
283
+ // All current entries are done; force the retry pass to re-poll
284
+ nextEntries.length = 0;
258
285
  }
259
- if (earliestIndex >= 0) {
260
- // replace the entry with the next one from the iterator we pulled from
261
- nextEntries[earliestIndex] = iterators[earliestIndex].next();
262
- return {
263
- value: onlyKeys ? earliest.timestamp : earliest,
264
- done: false,
265
- };
266
- } // else we are done
267
- nextEntries.length = 0; // reset so if this iterator is restarted, we can re-query
268
286
  return { value: undefined, done: true };
269
287
  },
270
288
  addLog(logName: string) {
package/resources/Table.ts CHANGED
@@ -100,6 +100,11 @@ const TEST_WRITE_KEY_BUFFER = Buffer.allocUnsafeSlow(8192);
100
100
  const MAX_KEY_BYTES = 1978;
101
101
  const EVENT_HIGH_WATER_MARK = 100;
102
102
  const REPLAY_YIELD_INTERVAL = 100; // yield to the event loop every N records during subscription replay
103
+ // Cap for the out-of-order write reconciliation audit-chain walk in commit(). A pathologically deep
104
+ // audit history (e.g. a replication full-copy of a large-history database) would otherwise walk and
105
+ // buffer the entire backward chain per record, synchronously, on every worker — pinning the JS heap
106
+ // until the worker OOMs (issue #1114). Beyond this depth we fall back to a bounded reconciliation.
107
+ const MAX_OUT_OF_ORDER_AUDIT_DEPTH = 1000;
103
108
  const FULL_PERMISSIONS = {
104
109
  read: true,
105
110
  insert: true,
@@ -1739,8 +1744,18 @@ export function makeTable(options) {
1739
1744
  }
1740
1745
  let addedAuditRef = false;
1741
1746
  let nextRef: { localTime: number; nodeId: number };
1747
+ let walkSteps = 0;
1748
+ let auditWalkCapped = false;
1742
1749
  do {
1743
1750
  while (localTime > txnTime || (auditedVersion >= txnTime && localTime > 0)) {
1751
+ // Bound the walk only for RocksDB, where the OOM was observed (issue #1114): each step
1752
+ // is a transaction-log range scan + msgpackr decode, and the per-node logs can be huge.
1753
+ // LMDB audit entries are keyed by local audit time (not version), so the duplicate
1754
+ // shortcut below would not apply — keep its exact, unbounded reconciliation.
1755
+ if (isRocksDB && ++walkSteps > MAX_OUT_OF_ORDER_AUDIT_DEPTH) {
1756
+ auditWalkCapped = true;
1757
+ break;
1758
+ }
1744
1759
  const auditRecord = auditStore.get(localTime, tableId, id, nodeId);
1745
1760
  if (!auditRecord) break;
1746
1761
  auditedVersion = auditRecord.version;
@@ -1768,8 +1783,11 @@ export function makeTable(options) {
1768
1783
  }
1769
1784
  if (auditRecord.type === 'patch') {
1770
1785
  logger.debug?.('out of order patch will be applied', id, auditRecord);
1771
- // record patches so we can reply in order
1772
- succeedingUpdates.push(auditRecord);
1786
+ // Materialize the patch value now and keep only { version, value } rather than the
1787
+ // audit record itself, so its backing transaction-log buffer and decoders can be
1788
+ // reclaimed immediately. Only these two fields are needed for the ordered fold below;
1789
+ // retaining the full records is what pins the heap on a deep chain (issue #1114).
1790
+ succeedingUpdates.push({ version: auditedVersion, value: auditRecord.getValue(primaryStore) });
1773
1791
  auditRecordToStore = recordUpdate; // use the original update for the audit record
1774
1792
  } else if (auditRecord.type === 'put' || auditRecord.type === 'delete') {
1775
1793
  // There is newer full record update, so this incremental update is completely superseded
@@ -1801,6 +1819,7 @@ export function makeTable(options) {
1801
1819
  nodeId = auditRecord.previousNodeId;
1802
1820
  }
1803
1821
  // Check if we need to scan additional audit refs from this record
1822
+ if (auditWalkCapped) break;
1804
1823
  nextRef = auditRefsToVisit.shift();
1805
1824
  if (nextRef) {
1806
1825
  localTime = auditedVersion = nextRef.localTime;
@@ -1808,7 +1827,7 @@ export function makeTable(options) {
1808
1827
  logger.debug?.('Following additional audit ref to continue scanning', { localTime, nodeId });
1809
1828
  }
1810
1829
  } while (nextRef);
1811
- if (!localTime) {
1830
+ if (!localTime && !auditWalkCapped) {
1812
1831
  // if we reached the end of the audit trail, we can just apply the update
1813
1832
  logger.debug?.(
1814
1833
  'No further audit history, applying incremental updates based on available history',
@@ -1817,15 +1836,45 @@ export function makeTable(options) {
1817
1836
  existingEntry
1818
1837
  );
1819
1838
  }
1820
- succeedingUpdates.sort((a, b) => a.version - b.version); // order the patches
1821
- for (const auditRecord of succeedingUpdates) {
1822
- const newerUpdate = auditRecord.getValue(primaryStore);
1823
- logger.debug?.(
1824
- 'Rebuilding update with future patch:',
1825
- new Date(auditRecord.version),
1826
- newerUpdate,
1827
- auditRecord
1839
+ if (auditWalkCapped) {
1840
+ // The out-of-order audit chain exceeded MAX_OUT_OF_ORDER_AUDIT_DEPTH (a pathologically deep
1841
+ // history, seen during a replication full-copy of a large-history database — issue #1114).
1842
+ // Walking and buffering the whole chain per record OOMs the worker, so we stopped at the cap
1843
+ // and reconcile against only the most recent MAX_OUT_OF_ORDER_AUDIT_DEPTH updates (the fold
1844
+ // below). That is an approximation for histories deeper than the cap — updates older than the
1845
+ // retained window are not layered in — but the authoritative full-copy record restores exact
1846
+ // convergence. Because we stopped before reaching txnTime, the inline duplicate detection in
1847
+ // the walk never ran; full-copy audit-replay re-delivers writes, and re-applying one would
1848
+ // double-apply its commutative ops, so rule that out here with a single O(1) lookup at txnTime
1849
+ // (RocksDB audit logs are keyed by version, and the cap is RocksDB-only).
1850
+ logger.warn?.(
1851
+ 'Out-of-order audit reconciliation exceeded depth cap; reconciling against most recent updates only',
1852
+ {
1853
+ table: tableName,
1854
+ id,
1855
+ depth: walkSteps,
1856
+ }
1828
1857
  );
1858
+ const duplicate = auditStore.get(txnTime, tableId, id, options?.nodeId);
1859
+ if (
1860
+ duplicate &&
1861
+ duplicate.version === txnTime &&
1862
+ precedesExistingVersion(
1863
+ txnTime,
1864
+ { version: txnTime, localTime: txnTime, key: id, nodeId: duplicate.nodeId },
1865
+ options?.nodeId
1866
+ ) === 0
1867
+ ) {
1868
+ write.skipped = true;
1869
+ return; // duplicate write already applied
1870
+ }
1871
+ }
1872
+ // Fold the retained succeeding updates (the full chain, or — when capped — the most recent
1873
+ // window) onto this older write so newer fields win; for a capped walk this layers in only
1874
+ // what we collected before the cap.
1875
+ succeedingUpdates.sort((a, b) => a.version - b.version); // order the patches
1876
+ for (const { version: patchVersion, value: newerUpdate } of succeedingUpdates) {
1877
+ logger.debug?.('Rebuilding update with future patch:', new Date(patchVersion), newerUpdate);
1829
1878
  incrementalUpdateToApply = rebuildUpdateBefore(
1830
1879
  incrementalUpdateToApply ?? recordUpdate,
1831
1880
  newerUpdate,
package/resources/auditStore.ts CHANGED
@@ -259,6 +259,19 @@ export function setAuditRetention(retentionTime, defaultDelay = DEFAULT_AUDIT_CL
259
259
  DEFAULT_AUDIT_CLEANUP_DELAY = defaultDelay;
260
260
  }
261
261
 
262
+ /**
263
+ * One-shot purge of transaction-log files already older than the audit retention window,
264
+ * intended to run during startup/recovery before transaction-log replay. The steady-state
265
+ * cleanup loop (scheduleAuditCleanup) only starts once a worker reaches steady state, so a node
266
+ * that crash-loops during recovery never purges and its aged backlog only grows, enlarging the
267
+ * next replay/full-copy. Safe to run before replay: the native purge only deletes log files
268
+ * entirely before the last-flushed-to-RocksDB position, so unflushed entries that replay still
269
+ * needs are never removed. Returns the names of the purged files. See harper#1115.
270
+ */
271
+ export function purgeAgedLogs(rootStore: RocksDatabase): string[] {
272
+ return rootStore.purgeLogs({ before: Date.now() - auditRetention });
273
+ }
274
+
262
275
  const HAS_RECORD = 16;
263
276
  const HAS_PARTIAL_RECORD = 32; // will be used for CRDTs
264
277
  const PUT = 1;
package/resources/replayLogs.ts CHANGED
@@ -7,6 +7,7 @@ import { RocksTransactionLogStore } from './RocksTransactionLogStore.ts';
7
7
  import { isMainThread } from 'node:worker_threads';
8
8
  import { RequestTarget } from './RequestTarget.ts';
9
9
  import { classifyAuditEntryForReplay } from './replayLogsGuards.ts';
10
+ import { purgeAgedLogs } from './auditStore.ts';
10
11
 
11
12
  let warnedReplayHappening = false;
12
13
  export function replayLogs(rootStore: RocksDatabase, tables: any): Promise<void> {
@@ -16,6 +17,25 @@ export function replayLogs(rootStore: RocksDatabase, tables: any): Promise<void>
16
17
  resolve();
17
18
  });
18
19
  if (!acquired) return;
20
+ // Shed transaction-log files already older than the audit retention window before
21
+ // replaying. A node that crash-loops during recovery never reaches the steady-state
22
+ // cleanup loop, so without this its aged backlog only grows and enlarges each subsequent
23
+ // replay/full-copy. The native purge keeps any file holding unflushed entries, so this
24
+ // never drops data the replay below still needs. See harper#1115.
25
+ // Purging is a non-critical optimization, so a purge failure (filesystem/permission/native
26
+ // error) must never block the critical replay path that follows — especially here, during
27
+ // the recovery this fix is meant to harden.
28
+ let purgedLogs: string[] = [];
29
+ try {
30
+ purgedLogs = purgeAgedLogs(rootStore);
31
+ } catch (error) {
32
+ logger.warn(`Failed to purge aged transaction logs before replay in ${rootStore.databaseName} database`, error);
33
+ }
34
+ if (purgedLogs.length > 0) {
35
+ logger.info(
36
+ `Purged ${purgedLogs.length} aged transaction-log file(s) before replay in ${rootStore.databaseName} database`
37
+ );
38
+ }
19
39
  const tableById = new Map<number, typeof Resource>();
20
40
  for (const tableName in tables) {
21
41
  const table = tables[tableName];