@harperfast/harper-pro 5.0.2 → 5.0.3

package/dist/core/bin/copyDb.js

@@ -38,10 +38,12 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.compactOnStart = compactOnStart;
 exports.copyDb = copyDb;
+exports.migrateOnStart = migrateOnStart;
 const databases_ts_1 = require("../resources/databases.js");
 const lmdb_1 = require("lmdb");
 const path_1 = require("path");
 const fs_extra_1 = require("fs-extra");
+const node_fs_1 = require("node:fs");
 const environmentManager_js_1 = require("../utility/environment/environmentManager.js");
 const OpenEnvironmentObject_js_1 = __importDefault(require("../utility/lmdb/OpenEnvironmentObject.js"));
 const OpenDBIObject_js_1 = require("../utility/lmdb/OpenDBIObject.js");
@@ -51,6 +53,8 @@ const auditStore_ts_1 = require("../resources/auditStore.js");
 const schemaDescribe_js_1 = require("../dataLayer/schemaDescribe.js");
 const configUtils_js_1 = require("../config/configUtils.js");
 const hdbLogger = __importStar(require("../utility/logging/harper_logger.js"));
+const rocksdb_js_1 = require("@harperfast/rocksdb-js");
+const RocksIndexStore_ts_1 = require("../resources/RocksIndexStore.js");
 async function compactOnStart() {
     hdbLogger.notify('Running compact on start');
     console.log('Running compact on start');
@@ -295,4 +299,197 @@ async function copyDb(sourceDatabase, targetDatabasePath) {
         targetEnv.close();
     }
 }
+function openRocksDb(path, options = {}) {
+    options.disableWAL ??= false;
+    if (!(0, node_fs_1.existsSync)(path)) {
+        (0, node_fs_1.mkdirSync)(path, { recursive: true });
+    }
+    let db;
+    if (options.dupSort) {
+        db = rocksdb_js_1.RocksDatabase.open(new RocksIndexStore_ts_1.RocksIndexStore(path, options));
+    }
+    else {
+        db = rocksdb_js_1.RocksDatabase.open(path, options);
+        db.encoder.name = options.name;
+    }
+    return db;
+}
+async function migrateOnStart() {
+    hdbLogger.notify('Running migrate on start (LMDB to RocksDB)');
+    console.log('Running migrate on start (LMDB to RocksDB)');
+    const rootPath = (0, environmentManager_js_1.get)(hdbTerms_ts_1.CONFIG_PARAMS.ROOTPATH);
+    const databases = (0, databases_ts_1.getDatabases)();
+    (0, configUtils_js_1.updateConfigValue)(hdbTerms_ts_1.CONFIG_PARAMS.STORAGE_MIGRATEONSTART, false);
+    try {
+        for (const databaseName in databases) {
+            if (databaseName === 'system')
+                continue;
+            if (databaseName.endsWith('-copy'))
+                continue;
+            let rootStore;
+            for (const tableName in databases[databaseName]) {
+                const table = databases[databaseName][tableName];
+                table.primaryStore.put = noop;
+                table.primaryStore.remove = noop;
+                for (const attributeName in table.indices) {
+                    const index = table.indices[attributeName];
+                    index.put = noop;
+                    index.remove = noop;
+                }
+                if (table.auditStore) {
+                    table.auditStore.put = noop;
+                    table.auditStore.remove = noop;
+                }
+                rootStore = table.primaryStore.rootStore;
+            }
+            if (!rootStore) {
+                console.log("Couldn't find any tables in database", databaseName);
+                continue;
+            }
+            if (rootStore instanceof rocksdb_js_1.RocksDatabase) {
+                console.log('Database', databaseName, 'is already RocksDB, skipping');
+                continue;
+            }
+            const targetPath = (0, path_1.join)(rootPath, hdbTerms_ts_1.DATABASES_DIR_NAME, databaseName);
+            const lmdbPath = rootStore.path;
+            const backupDest = (0, path_1.join)(rootPath, 'backup', databaseName + '.mdb');
+            console.log('Migrating', databaseName, 'from LMDB to RocksDB at', targetPath);
+            await copyDbToRocks(rootStore, databaseName, targetPath);
+            // Back up the original LMDB file
+            console.log('Backing up LMDB', databaseName, 'to', backupDest);
+            try {
+                await (0, fs_extra_1.move)(lmdbPath, backupDest, { overwrite: true });
+            }
+            catch (error) {
+                console.log('Error moving database', lmdbPath, 'to', backupDest, error);
+            }
+            // Remove the lock file
+            try {
+                await (0, fs_extra_1.remove)(lmdbPath + '-lock');
+            }
+            catch {
+                // lock file may not exist
+            }
+        }
+        try {
+            (0, databases_ts_1.resetDatabases)();
+        }
+        catch (err) {
+            hdbLogger.error('Error resetting databases after migration', err);
+            console.error('Error resetting databases after migration', err);
+        }
+    }
+    catch (err) {
+        hdbLogger.error('Error migrating database', err);
+        console.error('Error migrating database', err);
+        throw err;
+    }
+}
+async function copyDbToRocks(sourceRootStore, sourceDatabase, targetPath) {
+    console.log(`Migrating database ${sourceDatabase} to RocksDB at ${targetPath}`);
+    const sourceDbisDb = sourceRootStore.dbisDb;
+    const targetRootStore = openRocksDb(targetPath, { disableWAL: false });
+    const targetDbisDb = openRocksDb(targetPath, {
+        disableWAL: false,
+        name: terms_js_1.INTERNAL_DBIS_NAME,
+    });
+    let written;
+    let outstandingWrites = 0;
+    const transaction = sourceDbisDb.useReadTransaction();
+    try {
+        for (const { key, value: attribute } of sourceDbisDb.getRange({ transaction })) {
+            const isPrimary = attribute.isPrimaryKey;
+            targetDbisDb.put(key, attribute);
+            if (!(isPrimary || attribute.indexed))
+                continue;
+            // Open source LMDB dbi with default encoding so values are decoded
+            const dbiInit = new OpenDBIObject_js_1.OpenDBIObject(!isPrimary, isPrimary);
+            const sourceDbi = sourceRootStore.openDB(key, dbiInit);
+            let targetDbi;
+            if (!isPrimary) {
+                targetDbi = openRocksDb(targetPath, { dupSort: true, name: key });
+            }
+            else {
+                targetDbi = openRocksDb(targetPath, { name: key });
+            }
+            console.log('migrating', key, 'from', sourceDatabase, 'to RocksDB');
+            await copyDbiToRocks(sourceDbi, targetDbi, isPrimary, transaction);
+        }
+        // Note: audit store is not migrated because LMDB and RocksDB use fundamentally different
+        // audit store formats (LMDB uses a custom binary encoding in a regular DB, RocksDB uses TransactionLog).
+        // A new audit store will be created automatically when the RocksDB database is opened.
+        await written;
+        console.log('migrated database ' + sourceDatabase + ' to RocksDB');
+    }
+    finally {
+        transaction.done();
+        targetRootStore.close();
+    }
+    async function copyDbiToRocks(sourceDbi, targetDbi, isPrimary, transaction) {
+        let recordsCopied = 0;
+        let skippedRecord = 0;
+        let retries = 1000000;
+        let start = null;
+        while (retries-- > 0) {
+            try {
+                if (isPrimary) {
+                    for (const { key, value, version } of sourceDbi.getRange({ start, transaction, versions: true })) {
+                        try {
+                            start = key;
+                            if (value == null) {
+                                skippedRecord++;
+                                continue;
+                            }
+                            written = targetDbi.put(key, value, version);
+                            recordsCopied++;
+                            if (transaction.openTimer)
+                                transaction.openTimer = 0;
+                            if (outstandingWrites++ > 5000) {
+                                await written;
+                                console.log('migrated', recordsCopied, 'entries, skipped', skippedRecord, 'delete records');
+                                outstandingWrites = 0;
+                            }
+                        }
+                        catch (error) {
+                            console.error('Error migrating record', typeof key === 'symbol' ? 'symbol' : key, 'from', sourceDatabase, error);
+                        }
+                    }
+                }
+                else {
+                    for (const { key, value } of sourceDbi.getRange({ start, transaction })) {
+                        try {
+                            start = key;
+                            written = targetDbi.put(key, value);
+                            recordsCopied++;
+                            if (transaction.openTimer)
+                                transaction.openTimer = 0;
+                            if (outstandingWrites++ > 5000) {
+                                await written;
+                                console.log('migrated', recordsCopied, 'index entries');
+                                outstandingWrites = 0;
+                            }
+                        }
+                        catch (error) {
+                            console.error('Error migrating index record', typeof key === 'symbol' ? 'symbol' : key, 'from', sourceDatabase, error);
+                        }
+                    }
+                }
+                console.log('finish migrating, copied', recordsCopied, 'entries, skipped', skippedRecord, 'delete records');
+                return;
+            }
+            catch {
+                if (typeof start === 'string') {
+                    if (start === 'z') {
+                        return console.error('Reached end of dbi', start, 'for', sourceDatabase);
+                    }
+                    start = start.slice(0, -2) + 'z';
+                }
+                else if (typeof start === 'number')
+                    start++;
+                else
+                    return console.error('Unknown key type', start, 'for', sourceDatabase);
+            }
+        }
+    }
+}
 //# sourceMappingURL=copyDb.js.map

package/dist/core/bin/copyDb.js.map

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package/dist/core/bin/restart.js

@@ -53,12 +53,6 @@ async function restart(req) {
         hdbLogger.notify(RESTART_RESPONSE);
         if (envMgr.get(hdbTerms.CONFIG_PARAMS.STORAGE_COMPACTONSTART))
             await compactOnStart();
-        if (process.env.HARPER_EXIT_ON_RESTART) {
-            // use this to exit the process so that it will be restarted by the
-            // PM/container/orchestrator.
-            hdbLogger.warn('Exiting Harper Pro process to trigger a container restart');
-            process.exit(0);
-        }
         setTimeout(async () => {
             // It seems like you should just be able to start the other process and kill this process and everything should
             // be cleaned up, however that doesn't work for some reason; the socket listening fds somehow get transferred to the
@@ -71,9 +65,16 @@ async function restart(req) {
             // remove pid file so it doesn't trip up the launch
             await unlinkSync(path.join(envMgr.get(hdbTerms.CONFIG_PARAMS.ROOTPATH), hdbTerms.HDB_PID_FILE), `${process.pid}`);
             hdbLogger.debug('Starting new process...');
+            if (process.env.HARPER_EXIT_ON_RESTART) {
+                // use this to exit the process so that it will be restarted by the
+                // PM/container/orchestrator.
+                hdbLogger.warn('Exiting Harper Pro process to trigger a container restart');
+                process.exit(0);
+            }
             // now launch the new process and exit this process
             require('./run.js').launch(true);
-        }, 50); // can't await this because it is going to do an exit()
+        }, 50); // can't await this because it is going to do an exit(), but wait for 50ms so we give the HTTP thread a
+        // chance to return a response
     }
     else {
         // Post msg to main parent thread requesting it restart (so the main thread can process.exit())

package/dist/core/bin/restart.js.map

@@ -1 +1 @@
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package/dist/core/bin/run.js

@@ -17,7 +17,7 @@ const installation = require("../utility/installation.js");
 const configUtils = require('../config/configUtils.js');
 const assignCMDENVVariables = require('../utility/assignCmdEnvVariables.js');
 const upgrade = require('./upgrade.js');
-const { compactOnStart } = require("./copyDb.js");
+const { compactOnStart, migrateOnStart } = require("./copyDb.js");
 const minimist = require('minimist');
 const keys = require('../security/keys.js');
 const { startHTTPThreads } = require("../server/threads/socketRouter.js");
@@ -173,6 +173,8 @@ async function main(calledByInstall = false) {
         await initialize(calledByInstall, true);
         if (env.get(terms.CONFIG_PARAMS.STORAGE_COMPACTONSTART))
             await compactOnStart();
+        if (env.get(terms.CONFIG_PARAMS.STORAGE_MIGRATEONSTART))
+            await migrateOnStart();
         const isScripted = process.env.IS_SCRIPTED_SERVICE && !cmdArgs.service;
         await startHTTPThreads(process.env.DEV_MODE
             ? 1

package/dist/core/bin/run.js.map

@@ -1 +1 @@
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package/dist/core/resources/DatabaseTransaction.js

@@ -43,6 +43,7 @@ const envMngr = __importStar(require("../utility/environment/environmentManager.
 const hdbTerms_ts_1 = require("../utility/hdbTerms.js");
 const common_utils_js_1 = require("../utility/common_utils.js");
 const when_ts_1 = require("../utility/when.js");
+const promises_1 = require("node:timers/promises");
 const rocksdb_js_1 = require("@harperfast/rocksdb-js");
 const trackedTxns = new Set();
 const MAX_OUTSTANDING_TXN_DURATION = (0, common_utils_js_1.convertToMS)(envMngr.get(hdbTerms_ts_1.CONFIG_PARAMS.STORAGE_MAXTRANSACTIONQUEUETIME)) || 45000; // Allow write transactions to be queued for up to 25 seconds before we start rejecting them
@@ -52,6 +53,7 @@ exports.TRANSACTION_STATE = {
     OPEN: 1, // the transaction is open and can be used for reads and writes
     LINGERING: 2, // the transaction has completed a read, but can be used for immediate writes
 };
+const MAX_RETRIES = 40;
 let outstandingCommit, outstandingCommitStart;
 let confirmReplication;
 function replicationConfirmation(callback) {
@@ -147,7 +149,10 @@ class DatabaseTransaction {
         transaction ??= this.transaction;
         let immediateCommit = false;
         if (!transaction) {
-            transaction = new rocksdb_js_1.Transaction(this.db.store);
+            transaction = new rocksdb_js_1.Transaction(operation.store.store);
+            if (operation.store.rootStore !== this.db.rootStore) {
+                harperLogger.warn?.('Created new transaction in save, but the store does match existing store', transaction.id);
+            }
             if (this.open === exports.TRANSACTION_STATE.OPEN) {
                 this.transaction = transaction;
             }
@@ -159,8 +164,10 @@ class DatabaseTransaction {
                 transaction.setTimestamp(txnTime);
             }
         }
+        else {
+        }
         if (this.retries > 0) {
-            // this is marks the rocks transaction as a retry so we don't write the transaction log again
+            // This marks the Rocks transaction as a retry so we don't write the transaction log again
             transaction.isRetry = true;
         }
         if (!txnTime)
@@ -283,6 +290,14 @@ class DatabaseTransaction {
                         // if the transaction failed due to concurrent changes, we need to retry. First record this as an increased risk of contention/retry
                         // for future transactions
                         this.retries++;
+                        harperLogger.debug?.('retrying', transaction.id, this.retries);
+                        if (this.retries > 2) {
+                            if (this.retries > MAX_RETRIES) {
+                                throw new hdbError_js_1.ServerError(`After ${MAX_RETRIES} retries, unable to commit transaction, transaction is in conflict with ongoing writes`);
+                            }
+                            // start delaying, back off to try to space out transactions and avoid excessive conflicts
+                            return (0, promises_1.setTimeout)(this.retries * this.retries).then(() => this.commit({ transaction }));
+                        }
                         return this.commit({ transaction }); // try again
                     }
                     else

package/dist/core/resources/DatabaseTransaction.js.map

@@ -1 +1 @@
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package/dist/core/resources/RecordEncoder.js

@@ -688,13 +688,13 @@ function recordUpdater(store, tableId, auditStore) {
 function setAdditionalAuditRefs(refs) {
     additionalAuditRefsNextEncoding = refs;
 }
-function removeEntry(store, entry, existingVersion) {
+function removeEntry(store, entry, options) {
     if (!entry)
         return;
     if (entry.value && entry.metadataFlags & auditStore_ts_1.HAS_BLOBS) {
         // if it used to have blobs, we need to delete the old blobs
         (0, blob_ts_1.deleteBlobsInObject)(entry.value);
     }
-    return store.remove(entry.key, existingVersion);
+    return store.remove(entry.key, options);
 }
 //# sourceMappingURL=RecordEncoder.js.map