@hardkas/query-store 0.2.2-alpha → 0.3.0-alpha

package/dist/indexer.js

@@ -1,146 +1,365 @@
 import fs from "node:fs";
 import path from "node:path";
-import { calculateContentHash } from "@hardkas/artifacts";
-import { validateEventEnvelope } from "@hardkas/core";
+import { createRequire } from "node:module";
+const require = createRequire(import.meta.url);
+const { DatabaseSync } = require("node:sqlite");
+import { calculateContentHash, verifyArtifactIntegrity } from "@hardkas/artifacts";
+import { validateEventEnvelope, formatCorruptionIssue } from "@hardkas/core";
 export class HardkasIndexer {
     db;
     hardkasDir;
+    strict;
     constructor(db, options = {}) {
         this.db = db;
         this.hardkasDir = path.join(options.cwd || process.cwd(), ".hardkas");
+        this.strict = options.strict || false;
     }
-    sync() {
-        if (!fs.existsSync(this.hardkasDir))
-            return;
+    /**
+     * Performs an incremental sync of the index.
+     * Transactional.
+     */
+    async sync() {
+        const result = {
+            schema: "hardkas.queryRebuild.v1",
+            ok: true,
+            artifacts: { scanned: 0, indexed: 0, duplicates: 0, corrupted: 0 },
+            events: { scanned: 0, indexed: 0, duplicates: 0, corrupted: 0 },
+            warnings: [],
+            errors: [],
+            issues: []
+        };
+        if (!fs.existsSync(this.hardkasDir)) {
+            return result;
+        }
+        // HardKAS Policy: Do not nest transactions.
+        // Sync handles its own transaction.
         this.db.exec("BEGIN TRANSACTION;");
         try {
-            this.syncArtifacts();
-            this.syncEvents();
-            this.syncTraces();
+            await this._syncInternal(result);
             this.db.exec("COMMIT;");
         }
         catch (e) {
             this.db.exec("ROLLBACK;");
-            throw e;
+            result.ok = false;
+            result.errors.push(`Sync failed: ${e.message}`);
+            if (this.strict)
+                throw e;
         }
+        return result;
     }
-    syncArtifacts() {
-        const walk = (dir) => {
-            let results = [];
-            if (!fs.existsSync(dir))
-                return results;
-            const list = fs.readdirSync(dir);
-            for (const file of list) {
-                const filePath = path.join(dir, file);
-                const stat = fs.statSync(filePath);
-                if (stat.isDirectory()) {
-                    results = results.concat(walk(filePath));
-                }
-                else if (file.endsWith(".json") && !file.endsWith("events.jsonl") && file !== "state.json") {
-                    results.push(filePath);
-                }
+    /**
+     * Internal indexing logic without transaction management.
+     */
+    async _syncInternal(result) {
+        await this.syncArtifacts(result);
+        this.syncEvents(result);
+        this.syncTraces();
+        this.cleanupZombies();
+        // Mark last sync
+        this.db.prepare("INSERT OR REPLACE INTO metadata (key, value) VALUES (?, ?)")
+            .run("last_indexed_at", new Date().toISOString());
+    }
+    /**
+     * Complete wipe and rebuild of the index.
+     */
+    /**
+     * Complete wipe and rebuild of the index.
+     * Atomic across wipe and first sync.
+     */
+    async rebuild() {
+        const result = {
+            schema: "hardkas.queryRebuild.v1",
+            ok: true,
+            artifacts: { scanned: 0, indexed: 0, duplicates: 0, corrupted: 0 },
+            events: { scanned: 0, indexed: 0, duplicates: 0, corrupted: 0 },
+            warnings: [],
+            errors: [],
+            issues: []
+        };
+        this.db.exec("BEGIN TRANSACTION;");
+        try {
+            // 1. Wipe
+            this._wipeInternal();
+            // 2. Full Sync (using internal logic to avoid nested transaction)
+            if (fs.existsSync(this.hardkasDir)) {
+                await this._syncInternal(result);
             }
-            return results;
+            this.db.exec("COMMIT;");
+        }
+        catch (e) {
+            this.db.exec("ROLLBACK;");
+            result.ok = false;
+            result.errors.push(`Rebuild failed: ${e.message}`);
+            if (this.strict)
+                throw e;
+        }
+        return result;
+    }
+    _wipeInternal() {
+        this.db.exec("DELETE FROM traces;");
+        this.db.exec("DELETE FROM events;");
+        this.db.exec("DELETE FROM lineage_edges;");
+        this.db.exec("DELETE FROM artifacts;");
+        this.db.exec("DELETE FROM metadata WHERE key = 'last_indexed_at';");
+    }
+    /**
+     * Diagnostic check of the index integrity and freshness.
+     */
+    doctor() {
+        const report = {
+            ok: true,
+            staleArtifacts: 0,
+            zombieArtifacts: 0,
+            corruptedFiles: [],
+            orphanEdges: 0,
+            lastIndexedAt: null
         };
-        const files = walk(this.hardkasDir);
-        const insertArtifact = this.db.prepare(`
-      INSERT OR IGNORE INTO artifacts 
-      (artifact_id, content_hash, schema, version, kind, network_id, tx_id, created_at, raw_json)
-      VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?)
+        // 1. Check last indexed
+        const lastIdx = this.db.prepare("SELECT value FROM metadata WHERE key = 'last_indexed_at'").get();
+        report.lastIndexedAt = lastIdx?.value || null;
+        // 2. Check for zombie rows (rows with no file or mismatched mtime)
+        const rows = this.db.prepare("SELECT artifact_id, file_path, file_mtime_ms FROM artifacts").all();
+        for (const row of rows) {
+            if (!row.file_path || !fs.existsSync(row.file_path)) {
+                report.zombieArtifacts++;
+            }
+            else {
+                const stat = fs.statSync(row.file_path);
+                if (stat.mtimeMs !== row.file_mtime_ms) {
+                    report.staleArtifacts++;
+                }
+            }
+        }
+        // 3. Check for orphan edges
+        const orphans = this.db.prepare(`
+      SELECT COUNT(*) as count FROM lineage_edges 
+      WHERE parent_artifact_id NOT IN (SELECT artifact_id FROM artifacts)
+      OR child_artifact_id NOT IN (SELECT artifact_id FROM artifacts)
+    `).get();
+        report.orphanEdges = orphans.count;
+        report.ok = report.staleArtifacts === 0 && report.zombieArtifacts === 0 && report.orphanEdges === 0;
+        return report;
+    }
+    async syncArtifacts(result) {
+        // Sort files to ensure deterministic indexing order
+        const files = this.walk(this.hardkasDir).sort();
+        const indexedAt = new Date().toISOString();
+        const upsertArtifact = this.db.prepare(`
+      INSERT INTO artifacts 
+      (artifact_id, content_hash, schema, version, kind, mode, network_id, tx_id, created_at, raw_json, file_path, file_mtime_ms, indexed_at)
+      VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)
+      ON CONFLICT(artifact_id) DO UPDATE SET
+        content_hash = excluded.content_hash,
+        schema = excluded.schema,
+        version = excluded.version,
+        kind = excluded.kind,
+        mode = excluded.mode,
+        network_id = excluded.network_id,
+        tx_id = excluded.tx_id,
+        created_at = excluded.created_at,
+        raw_json = excluded.raw_json,
+        file_path = excluded.file_path,
+        file_mtime_ms = excluded.file_mtime_ms,
+        indexed_at = excluded.indexed_at
     `);
-        const insertEdge = this.db.prepare(`
-      INSERT OR IGNORE INTO lineage_edges (lineage_id, parent_artifact_id, child_artifact_id, edge_kind, created_at)
-      VALUES (?, ?, ?, ?, ?)
+        const insertEdge = this.db.prepare(`
+      INSERT OR REPLACE INTO lineage_edges (lineage_id, parent_artifact_id, child_artifact_id, edge_kind, created_at)
+      VALUES (?, ?, ?, ?, ?)
     `);
-        const artifactsWithLineage = [];
-        // Pass 1: Index Artifacts
+        const artifactsToLink = [];
         for (const file of files) {
-            const content = fs.readFileSync(file, "utf-8");
+            result.artifacts.scanned++;
+            const stat = fs.statSync(file);
             try {
+                const verification = await verifyArtifactIntegrity(file);
+                if (!verification.ok) {
+                    result.artifacts.corrupted++;
+                    verification.issues.forEach(issue => {
+                        const corruptionIssue = {
+                            code: issue.code,
+                            severity: issue.severity === "warning" ? "warning" : "error",
+                            message: issue.message,
+                            path: file
+                        };
+                        result.issues.push(corruptionIssue);
+                        result.warnings.push(formatCorruptionIssue(corruptionIssue));
+                    });
+                    if (this.strict) {
+                        throw new Error(`Strict mode: corrupted artifact in ${file}`);
+                    }
+                    continue; // Skip corrupted artifact
+                }
+                const content = fs.readFileSync(file, "utf-8");
                 const parsed = JSON.parse(content);
-                if (!parsed.schema || !parsed.version || !parsed.artifactId)
-                    continue;
+                // Artifact ID is required for indexing
+                const artifactId = parsed.artifactId || parsed.contentHash || calculateContentHash(parsed);
                 const hash = parsed.contentHash || calculateContentHash(parsed);
-                insertArtifact.run(parsed.artifactId, hash, parsed.schema, parsed.version, parsed.kind || parsed.schema, parsed.networkId || "unknown", parsed.txId || null, parsed.createdAt || null, content);
+                upsertArtifact.run(artifactId, hash, parsed.schema, parsed.version, parsed.kind || parsed.schema, parsed.mode || "unknown", parsed.networkId || "unknown", parsed.txId || null, parsed.createdAt || null, content, file, stat.mtimeMs, indexedAt);
+                result.artifacts.indexed++;
                 if (parsed.lineage && parsed.lineage.parentArtifactId) {
-                    artifactsWithLineage.push(parsed);
+                    artifactsToLink.push(parsed);
                 }
             }
             catch (e) {
-                // Skip invalid JSON
+                result.artifacts.corrupted++;
+                const code = e instanceof SyntaxError ? "ARTIFACT_JSON_INVALID" : "ARTIFACT_ID_INVALID";
+                const corruptionIssue = {
+                    code: code,
+                    severity: "error",
+                    message: e.message,
+                    path: file
+                };
+                result.issues.push(corruptionIssue);
+                if (this.strict)
+                    throw e;
+                result.warnings.push(formatCorruptionIssue(corruptionIssue));
             }
         }
-        // Pass 2: Index Lineage Edges (after artifacts are present)
-        for (const parsed of artifactsWithLineage) {
+        // Pass 2: Lineage Edges (Now all artifact IDs exist)
+        for (const parsed of artifactsToLink) {
             try {
-                insertEdge.run(parsed.lineage.lineageId || "legacy-lineage", parsed.lineage.parentArtifactId, parsed.artifactId, "derived", parsed.createdAt || null);
+                insertEdge.run(parsed.lineage.lineageId || "legacy-lineage", parsed.lineage.parentArtifactId, parsed.artifactId || parsed.contentHash, "derived", parsed.createdAt || null);
             }
             catch (e) {
-                // Ignore edge errors (e.g. FK violation if parent missing from disk)
+                result.warnings.push(`Failed to link lineage for ${parsed.artifactId}: ${e.message}`);
             }
         }
     }
-    syncEvents() {
+    syncEvents(result) {
         const eventsPath = path.join(this.hardkasDir, "events.jsonl");
         if (!fs.existsSync(eventsPath))
             return;
+        const stat = fs.statSync(eventsPath);
+        const indexedAt = new Date().toISOString();
         const content = fs.readFileSync(eventsPath, "utf-8");
-        const lines = content.split("\n").filter(l => l.trim() !== "");
-        const stmt = this.db.prepare("SELECT COUNT(*) as count FROM events");
-        const result = stmt.get();
-        const existingCount = result.count;
-        if (lines.length <= existingCount)
-            return;
-        const newLines = lines.slice(existingCount);
-        const insertEvent = this.db.prepare(`
-      INSERT OR IGNORE INTO events 
-      (event_id, kind, domain, timestamp, workflow_id, correlation_id, causation_id, tx_id, artifact_id, network_id, raw_json)
-      VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)
+        const lines = content.split("\n");
+        const upsertEvent = this.db.prepare(`
+      INSERT INTO events 
+      (event_id, kind, domain, timestamp, workflow_id, correlation_id, causation_id, tx_id, artifact_id, network_id, raw_json, file_path, file_mtime_ms, indexed_at)
+      VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)
+      ON CONFLICT(event_id) DO UPDATE SET
+        kind = excluded.kind,
+        domain = excluded.domain,
+        timestamp = excluded.timestamp,
+        workflow_id = excluded.workflow_id,
+        correlation_id = excluded.correlation_id,
+        causation_id = excluded.causation_id,
+        tx_id = excluded.tx_id,
+        artifact_id = excluded.artifact_id,
+        network_id = excluded.network_id,
+        raw_json = excluded.raw_json,
+        file_path = excluded.file_path,
+        file_mtime_ms = excluded.file_mtime_ms,
+        indexed_at = excluded.indexed_at
     `);
-        for (const line of newLines) {
+        for (let i = 0; i < lines.length; i++) {
+            const line = lines[i].trim();
+            if (line === "")
+                continue;
+            result.events.scanned++;
+            const lineNum = i + 1;
             try {
                 const parsed = JSON.parse(line);
-                if (!validateEventEnvelope(parsed))
+                if (!validateEventEnvelope(parsed)) {
+                    const issue = {
+                        code: "EVENT_SCHEMA_INVALID",
+                        severity: "error",
+                        message: "Invalid event envelope structure",
+                        path: eventsPath,
+                        lineNumber: lineNum
+                    };
+                    result.issues.push(issue);
+                    result.events.corrupted++;
+                    if (this.strict)
+                        throw new Error(formatCorruptionIssue(issue));
+                    result.warnings.push(formatCorruptionIssue(issue));
                     continue;
-                insertEvent.run(parsed.eventId, parsed.kind, parsed.domain, parsed.timestamp || null, parsed.workflowId, parsed.correlationId, parsed.causationId || null, parsed.txId || null, parsed.artifactId || null, parsed.networkId, line);
+                }
+                upsertEvent.run(parsed.eventId, parsed.kind, parsed.domain, parsed.timestamp || null, parsed.workflowId, parsed.correlationId, parsed.causationId || null, parsed.txId || null, parsed.artifactId || null, parsed.networkId, line, eventsPath, stat.mtimeMs, indexedAt);
+                result.events.indexed++;
             }
             catch (e) {
-                // Skip invalid line
+                result.events.corrupted++;
+                const issue = {
+                    code: e instanceof SyntaxError ? "EVENT_JSON_INVALID" : "EVENT_LINE_CORRUPT",
+                    severity: "error",
+                    message: e.message,
+                    path: eventsPath,
+                    lineNumber: lineNum
+                };
+                result.issues.push(issue);
+                if (this.strict) {
+                    throw new Error(formatCorruptionIssue(issue));
+                }
+                result.warnings.push(formatCorruptionIssue(issue));
             }
         }
     }
     syncTraces() {
-        const upsertTrace = this.db.prepare(`
-      INSERT INTO traces (trace_id, workflow_id, root_event_id, status, started_at, ended_at)
-      SELECT 
-        'trace-' || workflow_id as trace_id,
-        workflow_id,
-        event_id as root_event_id,
-        CASE 
-          WHEN kind = 'workflow.completed' THEN 'completed'
-          WHEN kind = 'workflow.failed' THEN 'failed'
-          ELSE 'running'
-        END as status,
-        timestamp as started_at,
-        CASE 
-          WHEN kind IN ('workflow.completed', 'workflow.failed') THEN timestamp
-          ELSE NULL
-        END as ended_at
-      FROM events
-      WHERE kind LIKE 'workflow.%'
-      ON CONFLICT(workflow_id) DO UPDATE SET
-        status = CASE 
-          WHEN excluded.status IN ('completed', 'failed') THEN excluded.status
-          ELSE traces.status
-        END,
-        ended_at = CASE 
-          WHEN excluded.status IN ('completed', 'failed') THEN excluded.ended_at
-          ELSE traces.ended_at
-        END,
-        root_event_id = COALESCE(traces.root_event_id, excluded.root_event_id),
-        started_at = COALESCE(traces.started_at, excluded.started_at)
+        const upsertTrace = this.db.prepare(`
+      INSERT INTO traces (trace_id, workflow_id, root_event_id, status, started_at, ended_at)
+      SELECT 
+        'trace-' || workflow_id as trace_id,
+        workflow_id,
+        event_id as root_event_id,
+        CASE 
+          WHEN kind = 'workflow.completed' THEN 'completed'
+          WHEN kind = 'workflow.failed' THEN 'failed'
+          ELSE 'running'
+        END as status,
+        timestamp as started_at,
+        CASE 
+          WHEN kind IN ('workflow.completed', 'workflow.failed') THEN timestamp
+          ELSE NULL
+        END as ended_at
+      FROM events
+      WHERE kind LIKE 'workflow.%'
+      ON CONFLICT(workflow_id) DO UPDATE SET
+        status = CASE 
+          WHEN excluded.status IN ('completed', 'failed') THEN excluded.status
+          ELSE traces.status
+        END,
+        ended_at = CASE 
+          WHEN excluded.status IN ('completed', 'failed') THEN excluded.ended_at
+          ELSE traces.ended_at
+        END,
+        root_event_id = COALESCE(traces.root_event_id, excluded.root_event_id),
+        started_at = COALESCE(traces.started_at, excluded.started_at)
     `);
         upsertTrace.run();
     }
+    cleanupZombies() {
+        const rows = this.db.prepare("SELECT artifact_id, file_path FROM artifacts").all();
+        const deleteArtifact = this.db.prepare("DELETE FROM artifacts WHERE artifact_id = ?");
+        for (const row of rows) {
+            if (!row.file_path || !fs.existsSync(row.file_path)) {
+                deleteArtifact.run(row.artifact_id);
+            }
+        }
+        // Events cleanup (if file gone, all events gone)
+        const eventsPath = path.join(this.hardkasDir, "events.jsonl");
+        if (!fs.existsSync(eventsPath)) {
+            this.db.exec("DELETE FROM events;");
+        }
+    }
+    walk(dir) {
+        let results = [];
+        if (!fs.existsSync(dir))
+            return results;
+        const list = fs.readdirSync(dir);
+        for (const file of list) {
+            const filePath = path.join(dir, file);
+            const stat = fs.statSync(filePath);
+            if (stat.isDirectory()) {
+                if (file === "node_modules" || file === ".git")
+                    continue;
+                results = results.concat(this.walk(filePath));
+            }
+            else if (file.endsWith(".json") && !file.endsWith("events.jsonl") && file !== "state.json") {
+                results.push(filePath);
+            }
+        }
+        return results;
+    }
 }
 //# sourceMappingURL=indexer.js.map

package/dist/indexer.js.map

@@ -1 +1 @@
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package/dist/migrations.d.ts

@@ -0,0 +1,42 @@
+export interface Migration {
+    version: number;
+    name: string;
+    checksum: string;
+    up(db: any): void;
+}
+export interface MigrationHistoryEntry {
+    version: number;
+    name: string;
+    checksum: string;
+    applied_at: string;
+}
+export declare class MigrationRunner {
+    private db;
+    constructor(db: any);
+    /**
+     * Ensures the migration history table exists.
+     */
+    ensureHistoryTable(): void;
+    /**
+     * Fetches all applied migrations from the history table.
+     */
+    getAppliedMigrations(): MigrationHistoryEntry[];
+    /**
+     * Applies pending migrations in order.
+     */
+    migrate(migrations: Migration[]): {
+        applied: number;
+        status: "ok" | "bootstrapped" | "failed";
+    };
+    /**
+     * Legacy bootstrap: if the DB is in a known state but has no migration history,
+     * we inject the history without running the 'up' logic.
+     */
+    bootstrapLegacy(knownVersion: number, migrations: Migration[]): boolean;
+}
+/**
+ * Registry of all query-store migrations.
+ * Version 1: Initial schema (Baseline v0.2-alpha).
+ */
+export declare const MIGRATIONS: Migration[];
+//# sourceMappingURL=migrations.d.ts.map

package/dist/migrations.d.ts.map

@@ -0,0 +1 @@
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