@haniffalab/cherita-react 1.5.0 → 2.0.0-dev.2026-04-27.sha-2acdfe23

package/dist/cjs/components/dotplot/Dotplot.js

@@ -15,7 +15,8 @@ var _SettingsContext = require("../../context/SettingsContext");
 var _LoadingIndicators = require("../../utils/LoadingIndicators");
 var _requests = require("../../utils/requests");
 var _Resolver = require("../../utils/Resolver");
-var _PlotAlert = require("../full-page/PlotAlert");
+var _usePlotVisibility = _interopRequireDefault(require("../../utils/usePlotVisibility"));
+var _PlotAlert = require("../plot/PlotAlert");
 var _Toolbar = require("../toolbar/Toolbar");
 var _jsxRuntime = require("react/jsx-runtime");
 function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
@@ -26,14 +27,11 @@ function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol"
 function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
 function Dotplot(_ref) {
   let {
-    showObsBtn = false,
-    showVarsBtn = false,
-    showCtrlsBtn = false,
-    setShowObs,
-    setShowVars,
+    setShowCategories,
+    setShowSearch,
     setShowControls,
-    plotType,
-    setPlotType
+    setPlotType,
+    isFullscreen = false
   } = _ref;
   const ENDPOINT = 'dotplot';
   const dataset = (0, _DatasetContext.useDataset)();
@@ -49,6 +47,10 @@ function Dotplot(_ref) {
   const [hasSelections, setHasSelections] = (0, _react.useState)(false);
   const selectedObs = (0, _Resolver.useSelectedObs)();
   const selectedMultiVar = (0, _Resolver.useSelectedMultiVar)();
+  const {
+    showCategoriesBtn,
+    showSearchBtn
+  } = (0, _usePlotVisibility.default)(isFullscreen);
   const params = (0, _react.useMemo)(() => {
     var _selectedObs$omit;
     return {
@@ -125,19 +127,21 @@ function Dotplot(_ref) {
       });
     });
   }, [settings.controls.colorAxis.cmin, settings.controls.colorAxis.cmax]);
-  const customModeBarButtons = _lodash.default.compact([showObsBtn && (0, _Toolbar.ObsPlotlyToolbar)({
-    onClick: setShowObs
-  }), showVarsBtn && (0, _Toolbar.VarPlotlyToolbar)({
-    onClick: setShowVars
-  }), showCtrlsBtn && (0, _Toolbar.ControlsPlotlyToolbar)({
+  const modeBarButtons = [_lodash.default.compact([(0, _Toolbar.PlotlyModebarControls)({
     onClick: setShowControls
-  })]);
-  const modeBarButtons = customModeBarButtons.length ? [customModeBarButtons, _constants.PLOTLY_MODEBAR_BUTTONS] : [_constants.PLOTLY_MODEBAR_BUTTONS];
+  }), ..._constants.PLOTLY_MODEBAR_BUTTONS])];
   if (!serverError) {
     if (hasSelections) {
       return /*#__PURE__*/(0, _jsxRuntime.jsxs)("div", {
         className: "cherita-plot cherita-dotplot position-relative",
-        children: [isPending && /*#__PURE__*/(0, _jsxRuntime.jsx)(_LoadingIndicators.LoadingSpinner, {}), /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactPlotly.default, {
+        children: [/*#__PURE__*/(0, _jsxRuntime.jsx)("div", {
+          className: "plotly-toolbar",
+          children: /*#__PURE__*/(0, _jsxRuntime.jsx)(_Toolbar.PlotlyToolbar, {
+            setShowCategories: setShowCategories,
+            setShowSearch: setShowSearch,
+            isFullscreen: isFullscreen
+          })
+        }), isPending && /*#__PURE__*/(0, _jsxRuntime.jsx)(_LoadingIndicators.LoadingSpinner, {}), /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactPlotly.default, {
           data: data,
           layout: layout,
           useResizeHandler: true,
@@ -155,19 +159,19 @@ function Dotplot(_ref) {
     return /*#__PURE__*/(0, _jsxRuntime.jsx)(_PlotAlert.PlotAlert, {
       variant: "info",
       heading: "Set up your dotplot",
-      plotType: plotType,
+      plotType: _constants.PLOT_TYPES.DOTPLOT,
       setPlotType: setPlotType,
       children: /*#__PURE__*/(0, _jsxRuntime.jsxs)("p", {
         className: "p-0 m-0",
-        children: ["Select one or more", ' ', showVarsBtn ? /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.Button, {
+        children: ["Select one or more", ' ', showSearchBtn ? /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.Button, {
           variant: "link",
           className: "border-0 p-0 align-baseline",
-          onClick: setShowVars,
-          children: "features"
-        }) : 'features', ' ', "to display their expression across groups, then choose a", ' ', showObsBtn ? /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.Button, {
+          onClick: setShowSearch,
+          children: dataset.varLabel.plural
+        }) : dataset.varLabel.plural, ' ', "to display their ", dataset.valueLabel, " across groups, then choose a", ' ', showCategoriesBtn ? /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.Button, {
           variant: "link",
           className: "border-0 p-0 align-baseline",
-          onClick: setShowObs,
+          onClick: setShowCategories,
           children: "category"
         }) : 'category', ' ', "to group observations in the dotplot."]
       })
@@ -176,7 +180,7 @@ function Dotplot(_ref) {
     return /*#__PURE__*/(0, _jsxRuntime.jsx)(_PlotAlert.PlotAlert, {
       variant: "danger",
       heading: "Error displaying the dotplot",
-      plotType: plotType,
+      plotType: _constants.PLOT_TYPES.DOTPLOT,
       setPlotType: setPlotType,
       children: serverError.message || 'An unexpected error occurred while generating the plot.'
     });

package/dist/cjs/components/dotplot/DotplotControls.js

@@ -5,10 +5,13 @@ Object.defineProperty(exports, "__esModule", {
 });
 exports.DotplotControls = DotplotControls;
 var _react = require("react");
+var _lodash = _interopRequireDefault(require("lodash"));
 var _reactBootstrap = require("react-bootstrap");
+var _DatasetContext = require("../../context/DatasetContext");
 var _SettingsContext = require("../../context/SettingsContext");
 var _Controls = require("../controls/Controls");
 var _jsxRuntime = require("react/jsx-runtime");
+function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
 function ownKeys(e, r) { var t = Object.keys(e); if (Object.getOwnPropertySymbols) { var o = Object.getOwnPropertySymbols(e); r && (o = o.filter(function (r) { return Object.getOwnPropertyDescriptor(e, r).enumerable; })), t.push.apply(t, o); } return t; }
 function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t = null != arguments[r] ? arguments[r] : {}; r % 2 ? ownKeys(Object(t), !0).forEach(function (r) { _defineProperty(e, r, t[r]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(e, Object.getOwnPropertyDescriptors(t)) : ownKeys(Object(t)).forEach(function (r) { Object.defineProperty(e, r, Object.getOwnPropertyDescriptor(t, r)); }); } return e; }
 function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
@@ -17,6 +20,7 @@ function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e =
 function DotplotControls() {
   const settings = (0, _SettingsContext.useSettings)();
   const dispatch = (0, _SettingsContext.useSettingsDispatch)();
+  const dataset = (0, _DatasetContext.useDataset)();
   const [controls, setControls] = (0, _react.useState)({
     expressionCutoff: settings.controls.expressionCutoff,
     colorAxis: {
@@ -97,8 +101,8 @@ function DotplotControls() {
         plot: "dotplot"
       }), /*#__PURE__*/(0, _jsxRuntime.jsxs)(_reactBootstrap.Form.Group, {
         className: "mb-2",
-        children: [/*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.Form.Label, {
-          children: "Expression Cutoff"
+        children: [/*#__PURE__*/(0, _jsxRuntime.jsxs)(_reactBootstrap.Form.Label, {
+          children: [_lodash.default.capitalize(dataset.valueLabel), " Cutoff"]
         }), /*#__PURE__*/(0, _jsxRuntime.jsxs)(_reactBootstrap.InputGroup, {
           children: [/*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.Form.Control, {
             size: "sm",
@@ -125,7 +129,7 @@ function DotplotControls() {
         children: /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.Form.Check, {
           type: "switch",
           id: "meanOnlyExpressed",
-          label: "Average only above cutoff",
+          label: "Average only above ".concat(dataset.valueLabel, " cutoff"),
           checked: settings.controls.meanOnlyExpressed,
           onChange: () => {
             dispatch({

package/dist/cjs/components/heatmap/Heatmap.js

@@ -15,7 +15,8 @@ var _SettingsContext = require("../../context/SettingsContext");
 var _LoadingIndicators = require("../../utils/LoadingIndicators");
 var _requests = require("../../utils/requests");
 var _Resolver = require("../../utils/Resolver");
-var _PlotAlert = require("../full-page/PlotAlert");
+var _usePlotVisibility = _interopRequireDefault(require("../../utils/usePlotVisibility"));
+var _PlotAlert = require("../plot/PlotAlert");
 var _Toolbar = require("../toolbar/Toolbar");
 var _jsxRuntime = require("react/jsx-runtime");
 function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
@@ -26,14 +27,11 @@ function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol"
 function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
 function Heatmap(_ref) {
   let {
-    showObsBtn = false,
-    showVarsBtn = false,
-    showCtrlsBtn = false,
-    setShowObs,
-    setShowVars,
+    setShowCategories,
+    setShowSearch,
     setShowControls,
-    plotType,
-    setPlotType
+    setPlotType,
+    isFullscreen = false
   } = _ref;
   const ENDPOINT = 'heatmap';
   const dataset = (0, _DatasetContext.useDataset)();
@@ -48,6 +46,10 @@ function Heatmap(_ref) {
   const [hasSelections, setHasSelections] = (0, _react.useState)(false);
   const selectedObs = (0, _Resolver.useSelectedObs)();
   const selectedMultiVar = (0, _Resolver.useSelectedMultiVar)();
+  const {
+    showCategoriesBtn,
+    showSearchBtn
+  } = (0, _usePlotVisibility.default)(isFullscreen);
   const params = (0, _react.useMemo)(() => {
     var _selectedObs$omit;
     return {
@@ -99,19 +101,21 @@ function Heatmap(_ref) {
     colorscale.current = settings.controls.colorScale;
     updateColorscale(colorscale.current);
   }, [settings.controls.colorScale, updateColorscale]);
-  const customModeBarButtons = _lodash.default.compact([showObsBtn && (0, _Toolbar.ObsPlotlyToolbar)({
-    onClick: setShowObs
-  }), showVarsBtn && (0, _Toolbar.VarPlotlyToolbar)({
-    onClick: setShowVars
-  }), showCtrlsBtn && (0, _Toolbar.ControlsPlotlyToolbar)({
+  const modeBarButtons = [_lodash.default.compact([(0, _Toolbar.PlotlyModebarControls)({
     onClick: setShowControls
-  })]);
-  const modeBarButtons = customModeBarButtons.length ? [customModeBarButtons, _constants.PLOTLY_MODEBAR_BUTTONS] : [_constants.PLOTLY_MODEBAR_BUTTONS];
+  }), ..._constants.PLOTLY_MODEBAR_BUTTONS])];
   if (!serverError) {
     if (hasSelections) {
       return /*#__PURE__*/(0, _jsxRuntime.jsxs)("div", {
         className: "cherita-plot cherita-heatmap position-relative",
-        children: [isPending && /*#__PURE__*/(0, _jsxRuntime.jsx)(_LoadingIndicators.LoadingSpinner, {}), /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactPlotly.default, {
+        children: [/*#__PURE__*/(0, _jsxRuntime.jsx)("div", {
+          className: "plotly-toolbar",
+          children: /*#__PURE__*/(0, _jsxRuntime.jsx)(_Toolbar.PlotlyToolbar, {
+            setShowCategories: setShowCategories,
+            setShowSearch: setShowSearch,
+            isFullscreen: isFullscreen
+          })
+        }), isPending && /*#__PURE__*/(0, _jsxRuntime.jsx)(_LoadingIndicators.LoadingSpinner, {}), /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactPlotly.default, {
           data: data,
           layout: layout,
           useResizeHandler: true,
@@ -129,19 +133,19 @@ function Heatmap(_ref) {
     return /*#__PURE__*/(0, _jsxRuntime.jsx)(_PlotAlert.PlotAlert, {
       variant: "info",
       heading: "Set up your heatmap",
-      plotType: plotType,
+      plotType: _constants.PLOT_TYPES.HEATMAP,
       setPlotType: setPlotType,
       children: /*#__PURE__*/(0, _jsxRuntime.jsxs)("p", {
         className: "p-0 m-0",
-        children: ["Select one or more", ' ', showVarsBtn ? /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.Button, {
+        children: ["Select one or more", ' ', showSearchBtn ? /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.Button, {
           variant: "link",
           className: "border-0 p-0 align-baseline",
-          onClick: setShowVars,
-          children: "features"
-        }) : 'features', ' ', "to display their expression, then choose a", ' ', showObsBtn ? /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.Button, {
+          onClick: setShowSearch,
+          children: dataset.varLabel.plural
+        }) : dataset.varLabel.plural, ' ', "to display their ", dataset.valueLabel, ", then choose a", ' ', showCategoriesBtn ? /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.Button, {
           variant: "link",
           className: "border-0 p-0 align-baseline",
-          onClick: setShowObs,
+          onClick: setShowCategories,
           children: "category"
         }) : 'category', ' ', "to group observations in the heatmap."]
       })
@@ -150,7 +154,7 @@ function Heatmap(_ref) {
     return /*#__PURE__*/(0, _jsxRuntime.jsx)(_PlotAlert.PlotAlert, {
       variant: "danger",
       heading: "Error displaying the heatmap",
-      plotType: plotType,
+      plotType: _constants.PLOT_TYPES.HEATMAP,
       setPlotType: setPlotType,
       children: serverError.message || 'An unexpected error occurred while generating the plot.'
     });

package/dist/cjs/components/icons/HeatmapIcon.js

@@ -20,8 +20,8 @@ function HeatmapIcon(_ref) {
       gap = 1
     } = _ref,
     props = _objectWithoutProperties(_ref, _excluded);
-  const rows = 6; // genes
-  const cols = 8; // cells
+  const rows = 6; // features
+  const cols = 8; // observations
 
   // Example expression pattern for visual clusters
   const expressionLevels = [[1, 0.8, 0.2, 0.2, 0.5, 0.9, 1, 0.7], [0.9, 0.7, 0.1, 0.2, 0.4, 0.8, 0.9, 0.6], [0.1, 0.2, 0.8, 0.9, 0.7, 0.2, 0.1, 0.3], [0.2, 0.3, 0.9, 1, 0.8, 0.3, 0.2, 0.4], [0.5, 0.6, 0.2, 0.1, 0.9, 0.7, 0.6, 0.8], [0.6, 0.7, 0.3, 0.2, 0.8, 0.6, 0.7, 0.9]];

package/dist/cjs/components/matrixplot/Matrixplot.js

@@ -15,7 +15,8 @@ var _SettingsContext = require("../../context/SettingsContext");
 var _LoadingIndicators = require("../../utils/LoadingIndicators");
 var _requests = require("../../utils/requests");
 var _Resolver = require("../../utils/Resolver");
-var _PlotAlert = require("../full-page/PlotAlert");
+var _usePlotVisibility = _interopRequireDefault(require("../../utils/usePlotVisibility"));
+var _PlotAlert = require("../plot/PlotAlert");
 var _Toolbar = require("../toolbar/Toolbar");
 var _jsxRuntime = require("react/jsx-runtime");
 function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
@@ -26,14 +27,11 @@ function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol"
 function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
 function Matrixplot(_ref) {
   let {
-    showObsBtn = false,
-    showVarsBtn = false,
-    showCtrlsBtn = false,
-    setShowObs,
-    setShowVars,
+    setShowCategories,
+    setShowSearch,
     setShowControls,
-    plotType,
-    setPlotType
+    setPlotType,
+    isFullscreen = false
   } = _ref;
   const ENDPOINT = 'matrixplot';
   const dataset = (0, _DatasetContext.useDataset)();
@@ -48,6 +46,10 @@ function Matrixplot(_ref) {
   const [hasSelections, setHasSelections] = (0, _react.useState)(false);
   const selectedObs = (0, _Resolver.useSelectedObs)();
   const selectedMultiVar = (0, _Resolver.useSelectedMultiVar)();
+  const {
+    showCategoriesBtn,
+    showSearchBtn
+  } = (0, _usePlotVisibility.default)(isFullscreen);
   const params = (0, _react.useMemo)(() => {
     var _selectedObs$omit;
     return {
@@ -100,19 +102,21 @@ function Matrixplot(_ref) {
     colorscale.current = settings.controls.colorScale;
     updateColorscale(colorscale.current);
   }, [settings.controls.colorScale, updateColorscale]);
-  const customModeBarButtons = _lodash.default.compact([showObsBtn && (0, _Toolbar.ObsPlotlyToolbar)({
-    onClick: setShowObs
-  }), showVarsBtn && (0, _Toolbar.VarPlotlyToolbar)({
-    onClick: setShowVars
-  }), showCtrlsBtn && (0, _Toolbar.ControlsPlotlyToolbar)({
+  const modeBarButtons = [_lodash.default.compact([(0, _Toolbar.PlotlyModebarControls)({
     onClick: setShowControls
-  })]);
-  const modeBarButtons = customModeBarButtons.length ? [customModeBarButtons, _constants.PLOTLY_MODEBAR_BUTTONS] : [_constants.PLOTLY_MODEBAR_BUTTONS];
+  }), ..._constants.PLOTLY_MODEBAR_BUTTONS])];
   if (!serverError) {
     if (hasSelections) {
       return /*#__PURE__*/(0, _jsxRuntime.jsxs)("div", {
         className: "cherita-plot cherita-matrixplot position-relative",
-        children: [isPending && /*#__PURE__*/(0, _jsxRuntime.jsx)(_LoadingIndicators.LoadingSpinner, {}), /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactPlotly.default, {
+        children: [/*#__PURE__*/(0, _jsxRuntime.jsx)("div", {
+          className: "plotly-toolbar",
+          children: /*#__PURE__*/(0, _jsxRuntime.jsx)(_Toolbar.PlotlyToolbar, {
+            setShowCategories: setShowCategories,
+            setShowSearch: setShowSearch,
+            isFullscreen: isFullscreen
+          })
+        }), isPending && /*#__PURE__*/(0, _jsxRuntime.jsx)(_LoadingIndicators.LoadingSpinner, {}), /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactPlotly.default, {
           data: data,
           layout: layout,
           useResizeHandler: true,
@@ -130,28 +134,28 @@ function Matrixplot(_ref) {
     return /*#__PURE__*/(0, _jsxRuntime.jsx)(_PlotAlert.PlotAlert, {
       variant: "info",
       heading: "Set up your matrix plot",
-      plotType: plotType,
+      plotType: _constants.PLOT_TYPES.MATRIXPLOT,
       setPlotType: setPlotType,
       children: /*#__PURE__*/(0, _jsxRuntime.jsxs)("p", {
         className: "p-0 m-0",
-        children: ["Select a", ' ', showObsBtn ? /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.Button, {
+        children: ["Select a", ' ', showCategoriesBtn ? /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.Button, {
           variant: "link",
           className: "border-0 p-0 align-baseline",
-          onClick: setShowObs,
+          onClick: setShowCategories,
           children: "category"
-        }) : 'category', ' ', "to group observations, then choose one or more", ' ', showVarsBtn ? /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.Button, {
+        }) : 'category', ' ', "to group observations, then choose one or more", ' ', showSearchBtn ? /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.Button, {
           variant: "link",
           className: "border-0 p-0 align-baseline",
-          onClick: setShowVars,
-          children: "features"
-        }) : 'features', ' ', "to display the matrix plot."]
+          onClick: setShowSearch,
+          children: dataset.varLabel.plural
+        }) : dataset.varLabel.plural, ' ', "to display the matrix plot."]
       })
     });
   } else {
     return /*#__PURE__*/(0, _jsxRuntime.jsx)(_PlotAlert.PlotAlert, {
       variant: "danger",
       heading: "Error displaying the matrix plot",
-      plotType: plotType,
+      plotType: _constants.PLOT_TYPES.MATRIXPLOT,
       setPlotType: setPlotType,
       children: serverError.message || 'An unexpected error occurred while generating the plot.'
     });

package/dist/cjs/components/obs-list/ObsItem.js

@@ -165,7 +165,7 @@ function CategoricalItem(_ref2) {
     getColor
   } = (0, _colorHelper.useColor)();
   return /*#__PURE__*/(0, _jsxRuntime.jsx)("div", {
-    className: "virtualized-list-wrapper",
+    className: "virtualized-list-wrapper ps-1",
     children: /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.ListGroup.Item, {
       className: "obs-item",
       children: /*#__PURE__*/(0, _jsxRuntime.jsxs)("div", {
@@ -275,7 +275,7 @@ function CategoricalItem(_ref2) {
         })]
       })
     }, value)
-  });
+  }, value);
 }
 function CategoricalObs(_ref3) {
   let {

package/dist/cjs/components/offcanvas/{index.js → OffCanvas.js}

@@ -5,17 +5,21 @@ Object.defineProperty(exports, "__esModule", {
 });
 exports.OffcanvasControls = OffcanvasControls;
 exports.OffcanvasObs = OffcanvasObs;
+exports.OffcanvasObsExplorer = OffcanvasObsExplorer;
 exports.OffcanvasObsm = OffcanvasObsm;
 exports.OffcanvasVars = OffcanvasVars;
 var _Offcanvas = _interopRequireDefault(require("react-bootstrap/Offcanvas"));
 var _constants = require("../../constants/constants");
+var _DatasetContext = require("../../context/DatasetContext");
+var _ObsExplorer = require("../../views/PerturbationMap/ObsExplorer");
 var _ObsList = require("../obs-list/ObsList");
 var _ObsmList = require("../obsm-list/ObsmList");
 var _SearchBar = require("../search-bar/SearchBar");
 var _VarList = require("../var-list/VarList");
 var _jsxRuntime = require("react/jsx-runtime");
 const _excluded = ["show", "handleClose"],
-  _excluded2 = ["show", "handleClose", "Controls"];
+  _excluded2 = ["show", "handleClose", "Controls"],
+  _excluded3 = ["show", "handleClose"];
 function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
 function ownKeys(e, r) { var t = Object.keys(e); if (Object.getOwnPropertySymbols) { var o = Object.getOwnPropertySymbols(e); r && (o = o.filter(function (r) { return Object.getOwnPropertyDescriptor(e, r).enumerable; })), t.push.apply(t, o); } return t; }
 function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t = null != arguments[r] ? arguments[r] : {}; r % 2 ? ownKeys(Object(t), !0).forEach(function (r) { _defineProperty(e, r, t[r]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(e, Object.getOwnPropertyDescriptors(t)) : ownKeys(Object(t)).forEach(function (r) { Object.defineProperty(e, r, Object.getOwnPropertyDescriptor(t, r)); }); } return e; }
@@ -69,14 +73,15 @@ function OffcanvasVars(_ref3) {
     handleClose,
     mode = _constants.SELECTION_MODES.MULTIPLE
   } = _ref3;
+  const dataset = (0, _DatasetContext.useDataset)();
   return /*#__PURE__*/(0, _jsxRuntime.jsxs)(_Offcanvas.default, {
     show: show,
     onHide: handleClose,
     className: "offcanvas-vars",
     children: [/*#__PURE__*/(0, _jsxRuntime.jsx)(_Offcanvas.default.Header, {
       closeButton: true,
-      children: /*#__PURE__*/(0, _jsxRuntime.jsx)(_Offcanvas.default.Title, {
-        children: "Features"
+      children: /*#__PURE__*/(0, _jsxRuntime.jsxs)(_Offcanvas.default.Title, {
+        children: ["Search for ", dataset.varLabel.plural]
       })
     }), /*#__PURE__*/(0, _jsxRuntime.jsx)(_Offcanvas.default.Body, {
       children: /*#__PURE__*/(0, _jsxRuntime.jsxs)("div", {
@@ -112,4 +117,35 @@ function OffcanvasControls(_ref4) {
       children: /*#__PURE__*/(0, _jsxRuntime.jsx)(Controls, _objectSpread({}, props))
     })]
   });
+}
+function OffcanvasObsExplorer(_ref5) {
+  let {
+      show,
+      handleClose
+    } = _ref5,
+    props = _objectWithoutProperties(_ref5, _excluded3);
+  const dataset = (0, _DatasetContext.useDataset)();
+  return /*#__PURE__*/(0, _jsxRuntime.jsxs)(_Offcanvas.default, {
+    show: show,
+    onHide: handleClose,
+    children: [/*#__PURE__*/(0, _jsxRuntime.jsx)(_Offcanvas.default.Header, {
+      closeButton: true,
+      children: /*#__PURE__*/(0, _jsxRuntime.jsxs)(_Offcanvas.default.Title, {
+        children: ["Search for ", dataset.obsLabel.plural]
+      })
+    }), /*#__PURE__*/(0, _jsxRuntime.jsx)(_Offcanvas.default.Body, {
+      className: "p-1",
+      children: /*#__PURE__*/(0, _jsxRuntime.jsxs)("div", {
+        className: "sidebar-features",
+        children: [/*#__PURE__*/(0, _jsxRuntime.jsx)(_SearchBar.SearchBar, {
+          searchDiseases: false,
+          searchVar: false,
+          searchObs: true
+        }), /*#__PURE__*/(0, _jsxRuntime.jsx)("div", {
+          className: "sidebar-features-list",
+          children: /*#__PURE__*/(0, _jsxRuntime.jsx)(_ObsExplorer.ObsExplorer, _objectSpread({}, props))
+        })]
+      })
+    })]
+  });
 }

package/dist/cjs/components/{full-page → plot}/PlotAlert.js

@@ -34,7 +34,7 @@ function PlotAlert(_ref) {
         className: "w-100 h-100 d-flex justify-content-center align-items-center",
         children: /*#__PURE__*/(0, _jsxRuntime.jsxs)(_reactBootstrap.Alert, {
           variant: variant,
-          className: "m-0 w-75 w-lg-50 text-center",
+          className: "m-0 my-3 w-75 w-lg-50 text-center",
           children: [heading && /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.Alert.Heading, {
             children: heading
           }), " ", children]

package/dist/cjs/components/{full-page → plot}/PlotTypeSelector.js

@@ -6,6 +6,7 @@ Object.defineProperty(exports, "__esModule", {
 exports.PlotTypeSelector = PlotTypeSelector;
 var _react = require("react");
 var _constants = require("../../constants/constants");
+var _DatasetContext = require("../../context/DatasetContext");
 var _StyledTooltip = require("../../utils/StyledTooltip");
 var _DotPlotIcon = _interopRequireDefault(require("../icons/DotPlotIcon"));
 var _HeatmapIcon = _interopRequireDefault(require("../icons/HeatmapIcon"));
@@ -23,33 +24,67 @@ const plotTypes = [{
   type: _constants.PLOT_TYPES.SCATTERPLOT,
   icon: _ScatterplotIcon.default,
   name: 'Scatterplot',
-  description: 'Displays cells in 2D based on dimensionality reduction.'
+  description: _ref => {
+    let {
+      obsLabel
+    } = _ref;
+    return "Displays ".concat(obsLabel.plural, " in 2D based on dimensionality reduction.");
+  }
 }, {
   type: _constants.PLOT_TYPES.MATRIXPLOT,
   icon: _MatrixPlotIcon.default,
   name: 'Matrix Plot',
-  description: 'Shows expression values of genes across categories.'
+  description: _ref2 => {
+    let {
+      varLabel,
+      valueLabel
+    } = _ref2;
+    return "Shows ".concat(valueLabel, " values of ").concat(varLabel.plural, " across categories.");
+  }
 }, {
   type: _constants.PLOT_TYPES.DOTPLOT,
   icon: _DotPlotIcon.default,
   name: 'Dot Plot',
-  description: 'Shows proportion and expression of genes across groups.'
+  description: _ref3 => {
+    let {
+      varLabel,
+      valueLabel
+    } = _ref3;
+    return "Shows proportion and ".concat(valueLabel, " of ").concat(varLabel.plural, " across groups.");
+  }
 }, {
   type: _constants.PLOT_TYPES.HEATMAP,
   icon: _HeatmapIcon.default,
   name: 'Heatmap',
-  description: 'Visualises gene expression or feature activity as a colour-coded matrix.'
+  description: _ref4 => {
+    let {
+      varLabel,
+      valueLabel
+    } = _ref4;
+    return "Visualises ".concat(valueLabel, " of ").concat(varLabel.plural, " as a colour-coded matrix.");
+  }
 }, {
   type: _constants.PLOT_TYPES.VIOLINPLOT,
   icon: _ViolinPlotIcon.default,
   name: 'Violin Plot',
-  description: 'Displays distribution of gene expression across categories.'
+  description: _ref5 => {
+    let {
+      obsLabel,
+      valueLabel
+    } = _ref5;
+    return "Displays distribution of ".concat(valueLabel, " across ").concat(obsLabel.plural, ".");
+  }
 }];
-function PlotTypeSelector(_ref) {
+function PlotTypeSelector(_ref6) {
   let {
     currentType,
     onChange
-  } = _ref;
+  } = _ref6;
+  const {
+    obsLabel,
+    varLabel,
+    valueLabel
+  } = (0, _DatasetContext.useDataset)();
   const [hoveredMap, setHoveredMap] = (0, _react.useState)({});
   const handleMouseEnter = type => setHoveredMap(prev => _objectSpread(_objectSpread({}, prev), {}, {
     [type]: true
@@ -59,13 +94,13 @@ function PlotTypeSelector(_ref) {
   }));
   return /*#__PURE__*/(0, _jsxRuntime.jsx)("div", {
     className: "d-flex gap-2 justify-content-between",
-    children: plotTypes.map(_ref2 => {
+    children: plotTypes.map(_ref7 => {
       let {
         type,
         icon: Icon,
         name,
         description
-      } = _ref2;
+      } = _ref7;
       const isActive = currentType === type;
       const hovered = hoveredMap[type] || false;
       const colour = isActive ? '#005a86' : hovered ? '#0071a7' : '#000';
@@ -73,7 +108,11 @@ function PlotTypeSelector(_ref) {
         title: /*#__PURE__*/(0, _jsxRuntime.jsxs)(_jsxRuntime.Fragment, {
           children: [/*#__PURE__*/(0, _jsxRuntime.jsx)("strong", {
             children: name
-          }), /*#__PURE__*/(0, _jsxRuntime.jsx)("br", {}), description]
+          }), /*#__PURE__*/(0, _jsxRuntime.jsx)("br", {}), description({
+            obsLabel,
+            varLabel,
+            valueLabel
+          })]
         }),
         placement: "bottom",
         slotProps: {

package/dist/cjs/components/pseudospatial/Pseudospatial.js

@@ -93,7 +93,8 @@ function Pseudospatial(_ref) {
     setPlotType
   } = _ref;
   const {
-    imageUrl
+    imageUrl,
+    valueLabel
   } = (0, _DatasetContext.useDataset)();
   const settings = (0, _SettingsContext.useSettings)();
   const dispatch = (0, _SettingsContext.useSettingsDispatch)();
@@ -279,7 +280,7 @@ function Pseudospatial(_ref) {
         }), hasSelections && showLegend && /*#__PURE__*/(0, _jsxRuntime.jsx)(_Legend.Legend, {
           min: layout === null || layout === void 0 || (_layout$coloraxis5 = layout.coloraxis) === null || _layout$coloraxis5 === void 0 ? void 0 : _layout$coloraxis5.cmin,
           max: layout === null || layout === void 0 || (_layout$coloraxis6 = layout.coloraxis) === null || _layout$coloraxis6 === void 0 ? void 0 : _layout$coloraxis6.cmax,
-          addText: plotType === _constants.PSEUDOSPATIAL_PLOT_TYPES.GENE ? ' - Mean expression' : plotType === _constants.PSEUDOSPATIAL_PLOT_TYPES.CATEGORICAL ? ' - %' : plotType === _constants.PSEUDOSPATIAL_PLOT_TYPES.CONTINUOUS ? ' - Mean value' : ''
+          addText: plotType === _constants.PSEUDOSPATIAL_PLOT_TYPES.GENE ? " - Mean ".concat(valueLabel) : plotType === _constants.PSEUDOSPATIAL_PLOT_TYPES.CATEGORICAL ? ' - %' : plotType === _constants.PSEUDOSPATIAL_PLOT_TYPES.CONTINUOUS ? ' - Mean value' : ''
         })]
       })
     });