@haniffalab/cherita-react 1.3.0 → 1.3.1-dev.2025-10-29.def77f5f
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +1 -1
- package/dist/cjs/components/controls/Controls.js +38 -30
- package/dist/cjs/components/dotplot/Dotplot.js +85 -57
- package/dist/cjs/components/dotplot/DotplotControls.js +103 -83
- package/dist/cjs/components/full-page/FullPage.js +167 -114
- package/dist/cjs/components/full-page/PlotAlert.js +45 -0
- package/dist/cjs/components/full-page/PlotTypeSelector.js +102 -0
- package/dist/cjs/components/heatmap/Heatmap.js +83 -53
- package/dist/cjs/components/heatmap/HeatmapControls.js +6 -3
- package/dist/cjs/components/icons/DotPlotIcon.js +64 -0
- package/dist/cjs/components/icons/HeatmapIcon.js +45 -0
- package/dist/cjs/components/icons/MatrixPlotIcon.1.js +57 -0
- package/dist/cjs/components/icons/MatrixPlotIcon.js +59 -0
- package/dist/cjs/components/icons/ScatterplotIcon.1.js +164 -0
- package/dist/cjs/components/icons/ScatterplotIcon.js +144 -0
- package/dist/cjs/components/icons/ViolinPlotIcon.js +42 -0
- package/dist/cjs/components/matrixplot/Matrixplot.js +83 -54
- package/dist/cjs/components/matrixplot/MatrixplotControls.js +8 -5
- package/dist/cjs/components/obs-list/ObsItem.js +305 -216
- package/dist/cjs/components/obs-list/ObsList.js +164 -128
- package/dist/cjs/components/obs-list/ObsToolbar.js +2 -3
- package/dist/cjs/components/obsm-list/ObsmList.js +67 -28
- package/dist/cjs/components/offcanvas/index.js +62 -27
- package/dist/cjs/components/pseudospatial/Pseudospatial.js +132 -76
- package/dist/cjs/components/pseudospatial/PseudospatialToolbar.js +122 -74
- package/dist/cjs/components/scatterplot/Scatterplot.js +223 -175
- package/dist/cjs/components/scatterplot/ScatterplotControls.js +45 -31
- package/dist/cjs/components/scatterplot/SpatialControls.js +143 -116
- package/dist/cjs/components/scatterplot/Toolbox.js +41 -30
- package/dist/cjs/components/search-bar/SearchBar.js +176 -120
- package/dist/cjs/components/search-bar/SearchInfo.js +79 -85
- package/dist/cjs/components/search-bar/SearchResults.js +93 -71
- package/dist/cjs/components/toolbar/Toolbar.js +111 -0
- package/dist/cjs/components/var-list/VarItem.js +131 -103
- package/dist/cjs/components/var-list/VarList.js +96 -74
- package/dist/cjs/components/var-list/VarListToolbar.js +59 -54
- package/dist/cjs/components/var-list/VarSet.js +126 -108
- package/dist/cjs/components/violin/Violin.js +124 -81
- package/dist/cjs/components/violin/ViolinControls.js +8 -5
- package/dist/cjs/constants/colorscales.js +19 -19
- package/dist/cjs/constants/constants.js +54 -39
- package/dist/cjs/context/DatasetContext.js +27 -17
- package/dist/cjs/context/FilterContext.js +11 -9
- package/dist/cjs/context/SettingsContext.js +339 -125
- package/dist/cjs/context/ZarrDataContext.js +6 -5
- package/dist/cjs/helpers/color-helper.js +2 -2
- package/dist/cjs/helpers/map-helper.js +2 -1
- package/dist/cjs/helpers/zarr-helper.js +3 -3
- package/dist/cjs/index.js +15 -21
- package/dist/cjs/utils/Filter.js +16 -11
- package/dist/cjs/utils/Histogram.js +35 -33
- package/dist/cjs/utils/ImageViewer.js +11 -8
- package/dist/cjs/utils/Legend.js +37 -30
- package/dist/cjs/utils/LoadingIndicators.js +15 -13
- package/dist/cjs/utils/Resolver.js +213 -0
- package/dist/cjs/utils/Skeleton.js +10 -10
- package/dist/cjs/utils/StyledTooltip.js +44 -0
- package/dist/cjs/utils/VirtualizedList.js +36 -29
- package/dist/cjs/utils/errors.js +15 -15
- package/dist/cjs/utils/requests.js +21 -9
- package/dist/cjs/utils/search.js +4 -4
- package/dist/cjs/utils/string.js +6 -6
- package/dist/cjs/utils/zarrData.js +20 -21
- package/dist/css/cherita.css +188 -65
- package/dist/css/cherita.css.map +1 -1
- package/dist/esm/components/controls/Controls.js +43 -35
- package/dist/esm/components/dotplot/Dotplot.js +93 -64
- package/dist/esm/components/dotplot/DotplotControls.js +106 -85
- package/dist/esm/components/full-page/FullPage.js +180 -124
- package/dist/esm/components/full-page/PlotAlert.js +39 -0
- package/dist/esm/components/full-page/PlotTypeSelector.js +95 -0
- package/dist/esm/components/heatmap/Heatmap.js +91 -60
- package/dist/esm/components/heatmap/HeatmapControls.js +8 -4
- package/dist/esm/components/icons/DotPlotIcon.js +58 -0
- package/dist/esm/components/icons/HeatmapIcon.js +39 -0
- package/dist/esm/components/icons/MatrixPlotIcon.1.js +51 -0
- package/dist/esm/components/icons/MatrixPlotIcon.js +53 -0
- package/dist/esm/components/icons/ScatterplotIcon.1.js +158 -0
- package/dist/esm/components/icons/ScatterplotIcon.js +138 -0
- package/dist/esm/components/icons/ViolinPlotIcon.js +36 -0
- package/dist/esm/components/matrixplot/Matrixplot.js +91 -61
- package/dist/esm/components/matrixplot/MatrixplotControls.js +10 -6
- package/dist/esm/components/obs-list/ObsItem.js +320 -228
- package/dist/esm/components/obs-list/ObsList.js +179 -142
- package/dist/esm/components/obs-list/ObsToolbar.js +3 -3
- package/dist/esm/components/obsm-list/ObsmList.js +71 -32
- package/dist/esm/components/offcanvas/index.js +68 -33
- package/dist/esm/components/pseudospatial/Pseudospatial.js +145 -88
- package/dist/esm/components/pseudospatial/PseudospatialToolbar.js +127 -78
- package/dist/esm/components/scatterplot/Scatterplot.js +243 -194
- package/dist/esm/components/scatterplot/ScatterplotControls.js +50 -35
- package/dist/esm/components/scatterplot/SpatialControls.js +155 -127
- package/dist/esm/components/scatterplot/Toolbox.js +44 -32
- package/dist/esm/components/search-bar/SearchBar.js +187 -130
- package/dist/esm/components/search-bar/SearchInfo.js +86 -91
- package/dist/esm/components/search-bar/SearchResults.js +100 -77
- package/dist/esm/components/toolbar/Toolbar.js +101 -0
- package/dist/esm/components/var-list/VarItem.js +142 -113
- package/dist/esm/components/var-list/VarList.js +108 -88
- package/dist/esm/components/var-list/VarListToolbar.js +64 -58
- package/dist/esm/components/var-list/VarSet.js +134 -115
- package/dist/esm/components/violin/Violin.js +135 -91
- package/dist/esm/components/violin/ViolinControls.js +10 -6
- package/dist/esm/constants/colorscales.js +19 -19
- package/dist/esm/constants/constants.js +53 -38
- package/dist/esm/context/DatasetContext.js +34 -23
- package/dist/esm/context/FilterContext.js +11 -8
- package/dist/esm/context/SettingsContext.js +341 -126
- package/dist/esm/context/ZarrDataContext.js +8 -6
- package/dist/esm/helpers/color-helper.js +5 -5
- package/dist/esm/helpers/map-helper.js +4 -3
- package/dist/esm/helpers/zarr-helper.js +6 -6
- package/dist/esm/index.js +22 -22
- package/dist/esm/utils/Filter.js +22 -17
- package/dist/esm/utils/Histogram.js +39 -37
- package/dist/esm/utils/ImageViewer.js +12 -8
- package/dist/esm/utils/Legend.js +44 -36
- package/dist/esm/utils/LoadingIndicators.js +16 -13
- package/dist/esm/utils/Resolver.js +201 -0
- package/dist/esm/utils/Skeleton.js +11 -10
- package/dist/esm/utils/StyledTooltip.js +38 -0
- package/dist/esm/utils/VirtualizedList.js +37 -29
- package/dist/esm/utils/errors.js +15 -15
- package/dist/esm/utils/requests.js +24 -12
- package/dist/esm/utils/search.js +7 -7
- package/dist/esm/utils/string.js +7 -7
- package/dist/esm/utils/zarrData.js +27 -28
- package/package.json +24 -10
- package/scss/cherita-bootstrap.scss +2 -2
- package/scss/cherita.scss +65 -17
- package/scss/components/accordions.scss +15 -2
- package/scss/components/layouts.scss +116 -30
- package/scss/components/lists.scss +16 -5
- package/scss/components/plotly.scss +40 -23
- package/scss/components/plots.scss +14 -1
- package/dist/cjs/components/full-page/FullPagePseudospatial.js +0 -157
- package/dist/esm/components/full-page/FullPagePseudospatial.js +0 -149
|
@@ -3,10 +3,11 @@ function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t =
|
|
|
3
3
|
function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
|
|
4
4
|
function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == typeof i ? i : i + ""; }
|
|
5
5
|
function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
|
|
6
|
-
import
|
|
7
|
-
import { Button, Form, InputGroup } from
|
|
8
|
-
import { useSettings, useSettingsDispatch } from
|
|
9
|
-
import { ColorscaleSelect, ScaleSelect } from
|
|
6
|
+
import { useEffect, useState } from 'react';
|
|
7
|
+
import { Button, Form, InputGroup } from 'react-bootstrap';
|
|
8
|
+
import { useSettings, useSettingsDispatch } from '../../context/SettingsContext';
|
|
9
|
+
import { ColorscaleSelect, ScaleSelect } from '../controls/Controls';
|
|
10
|
+
import { jsx as _jsx, jsxs as _jsxs, Fragment as _Fragment } from "react/jsx-runtime";
|
|
10
11
|
export function DotplotControls() {
|
|
11
12
|
const settings = useSettings();
|
|
12
13
|
const dispatch = useSettingsDispatch();
|
|
@@ -26,88 +27,108 @@ export function DotplotControls() {
|
|
|
26
27
|
expressionCutoff: settings.controls.expressionCutoff
|
|
27
28
|
}));
|
|
28
29
|
}, [settings.controls.colorAxis.cmin, settings.controls.colorAxis.cmax, settings.controls.expressionCutoff]);
|
|
29
|
-
return /*#__PURE__*/
|
|
30
|
-
|
|
31
|
-
|
|
32
|
-
|
|
33
|
-
|
|
34
|
-
|
|
35
|
-
|
|
36
|
-
|
|
37
|
-
|
|
38
|
-
|
|
39
|
-
|
|
40
|
-
|
|
41
|
-
|
|
42
|
-
|
|
30
|
+
return /*#__PURE__*/_jsx(_Fragment, {
|
|
31
|
+
children: /*#__PURE__*/_jsxs(Form, {
|
|
32
|
+
children: [/*#__PURE__*/_jsx(ColorscaleSelect, {}), /*#__PURE__*/_jsx(Form.Group, {
|
|
33
|
+
className: "mb-2",
|
|
34
|
+
children: /*#__PURE__*/_jsxs(InputGroup, {
|
|
35
|
+
children: [/*#__PURE__*/_jsx(InputGroup.Text, {
|
|
36
|
+
children: "min"
|
|
37
|
+
}), /*#__PURE__*/_jsx(Form.Control, {
|
|
38
|
+
name: "scaleMin",
|
|
39
|
+
size: "sm",
|
|
40
|
+
type: "number",
|
|
41
|
+
value: controls.colorAxis.cmin,
|
|
42
|
+
step: 0.1,
|
|
43
|
+
min: Math.min(settings.controls.colorAxis.dmin, 0.0),
|
|
44
|
+
max: settings.controls.colorAxis.dmax,
|
|
45
|
+
onChange: e => {
|
|
46
|
+
setControls(_objectSpread(_objectSpread({}, controls), {}, {
|
|
47
|
+
colorAxis: _objectSpread(_objectSpread({}, controls.colorAxis), {}, {
|
|
48
|
+
cmin: e.target.value
|
|
49
|
+
})
|
|
50
|
+
}));
|
|
51
|
+
}
|
|
52
|
+
}), /*#__PURE__*/_jsx(InputGroup.Text, {
|
|
53
|
+
children: "max"
|
|
54
|
+
}), /*#__PURE__*/_jsx(Form.Control, {
|
|
55
|
+
name: "scaleMax",
|
|
56
|
+
size: "sm",
|
|
57
|
+
type: "number",
|
|
58
|
+
value: controls.colorAxis.cmax,
|
|
59
|
+
step: 0.1,
|
|
60
|
+
min: controls.colorAxis.cmin,
|
|
61
|
+
max: settings.controls.colorAxis.dmax,
|
|
62
|
+
onChange: e => {
|
|
63
|
+
if (parseFloat(e.target.value) > settings.controls.colorAxis.dmax) {
|
|
64
|
+
e.target.value = settings.controls.colorAxis.dmax.toFixed(1);
|
|
65
|
+
}
|
|
66
|
+
setControls(_objectSpread(_objectSpread({}, controls), {}, {
|
|
67
|
+
colorAxis: _objectSpread(_objectSpread({}, controls.colorAxis), {}, {
|
|
68
|
+
cmax: e.target.value
|
|
69
|
+
})
|
|
70
|
+
}));
|
|
71
|
+
}
|
|
72
|
+
}), /*#__PURE__*/_jsx(Button, {
|
|
73
|
+
variant: "outline-primary",
|
|
74
|
+
onClick: () => dispatch({
|
|
75
|
+
type: 'set.controls.colorAxis.crange',
|
|
76
|
+
cmin: controls.colorAxis.cmin,
|
|
77
|
+
cmax: controls.colorAxis.cmax
|
|
78
|
+
}),
|
|
79
|
+
children: "Apply"
|
|
80
|
+
}), /*#__PURE__*/_jsx(Button, {
|
|
81
|
+
variant: "outline-primary",
|
|
82
|
+
onClick: () => dispatch({
|
|
83
|
+
type: 'set.controls.colorAxis.crange',
|
|
84
|
+
cmin: settings.controls.colorAxis.dmin,
|
|
85
|
+
cmax: settings.controls.colorAxis.dmax
|
|
86
|
+
}),
|
|
87
|
+
children: "Reset"
|
|
88
|
+
})]
|
|
43
89
|
})
|
|
44
|
-
})
|
|
45
|
-
|
|
46
|
-
|
|
47
|
-
|
|
48
|
-
|
|
49
|
-
|
|
50
|
-
|
|
51
|
-
|
|
52
|
-
|
|
53
|
-
|
|
54
|
-
|
|
55
|
-
|
|
56
|
-
|
|
57
|
-
|
|
58
|
-
|
|
59
|
-
|
|
60
|
-
|
|
90
|
+
}), /*#__PURE__*/_jsx(ScaleSelect, {
|
|
91
|
+
plot: "dotplot"
|
|
92
|
+
}), /*#__PURE__*/_jsxs(Form.Group, {
|
|
93
|
+
className: "mb-2",
|
|
94
|
+
children: [/*#__PURE__*/_jsx(Form.Label, {
|
|
95
|
+
children: "Expression Cutoff"
|
|
96
|
+
}), /*#__PURE__*/_jsxs(InputGroup, {
|
|
97
|
+
children: [/*#__PURE__*/_jsx(Form.Control, {
|
|
98
|
+
size: "sm",
|
|
99
|
+
type: "number",
|
|
100
|
+
step: '0.1',
|
|
101
|
+
min: 0.0,
|
|
102
|
+
value: controls.expressionCutoff,
|
|
103
|
+
onChange: e => {
|
|
104
|
+
setControls(_objectSpread(_objectSpread({}, controls), {}, {
|
|
105
|
+
expressionCutoff: e.target.value
|
|
106
|
+
}));
|
|
107
|
+
}
|
|
108
|
+
}), /*#__PURE__*/_jsx(Button, {
|
|
109
|
+
variant: "outline-primary",
|
|
110
|
+
onClick: () => dispatch({
|
|
111
|
+
type: 'set.controls.expressionCutoff',
|
|
112
|
+
expressionCutoff: parseFloat(controls.expressionCutoff)
|
|
113
|
+
}),
|
|
114
|
+
children: "Apply"
|
|
115
|
+
})]
|
|
116
|
+
})]
|
|
117
|
+
}), /*#__PURE__*/_jsx(Form.Group, {
|
|
118
|
+
className: "mb-2",
|
|
119
|
+
children: /*#__PURE__*/_jsx(Form.Check, {
|
|
120
|
+
type: "switch",
|
|
121
|
+
id: "meanOnlyExpressed",
|
|
122
|
+
label: "Average only above cutoff",
|
|
123
|
+
checked: settings.controls.meanOnlyExpressed,
|
|
124
|
+
onChange: () => {
|
|
125
|
+
dispatch({
|
|
126
|
+
type: 'set.controls.meanOnlyExpressed',
|
|
127
|
+
meanOnlyExpressed: !settings.controls.meanOnlyExpressed
|
|
128
|
+
});
|
|
129
|
+
}
|
|
61
130
|
})
|
|
62
|
-
})
|
|
63
|
-
}
|
|
64
|
-
}), /*#__PURE__*/React.createElement(Button, {
|
|
65
|
-
variant: "outline-primary",
|
|
66
|
-
onClick: () => dispatch({
|
|
67
|
-
type: "set.controls.colorAxis.crange",
|
|
68
|
-
cmin: controls.colorAxis.cmin,
|
|
69
|
-
cmax: controls.colorAxis.cmax
|
|
131
|
+
})]
|
|
70
132
|
})
|
|
71
|
-
}
|
|
72
|
-
variant: "outline-primary",
|
|
73
|
-
onClick: () => dispatch({
|
|
74
|
-
type: "set.controls.colorAxis.crange",
|
|
75
|
-
cmin: settings.controls.colorAxis.dmin,
|
|
76
|
-
cmax: settings.controls.colorAxis.dmax
|
|
77
|
-
})
|
|
78
|
-
}, "Reset"))), /*#__PURE__*/React.createElement(ScaleSelect, {
|
|
79
|
-
plot: "dotplot"
|
|
80
|
-
}), /*#__PURE__*/React.createElement(Form.Group, {
|
|
81
|
-
className: "mb-2"
|
|
82
|
-
}, /*#__PURE__*/React.createElement(Form.Label, null, "Expression Cutoff"), /*#__PURE__*/React.createElement(InputGroup, null, /*#__PURE__*/React.createElement(Form.Control, {
|
|
83
|
-
size: "sm",
|
|
84
|
-
type: "number",
|
|
85
|
-
step: "0.1",
|
|
86
|
-
min: 0.0,
|
|
87
|
-
value: controls.expressionCutoff,
|
|
88
|
-
onChange: e => {
|
|
89
|
-
setControls(_objectSpread(_objectSpread({}, controls), {}, {
|
|
90
|
-
expressionCutoff: e.target.value
|
|
91
|
-
}));
|
|
92
|
-
}
|
|
93
|
-
}), /*#__PURE__*/React.createElement(Button, {
|
|
94
|
-
variant: "outline-primary",
|
|
95
|
-
onClick: () => dispatch({
|
|
96
|
-
type: "set.controls.expressionCutoff",
|
|
97
|
-
expressionCutoff: parseFloat(controls.expressionCutoff)
|
|
98
|
-
})
|
|
99
|
-
}, "Apply"))), /*#__PURE__*/React.createElement(Form.Group, {
|
|
100
|
-
className: "mb-2"
|
|
101
|
-
}, /*#__PURE__*/React.createElement(Form.Check, {
|
|
102
|
-
type: "switch",
|
|
103
|
-
id: "meanOnlyExpressed",
|
|
104
|
-
label: "Average only above cutoff",
|
|
105
|
-
checked: settings.controls.meanOnlyExpressed,
|
|
106
|
-
onChange: () => {
|
|
107
|
-
dispatch({
|
|
108
|
-
type: "set.controls.meanOnlyExpressed",
|
|
109
|
-
meanOnlyExpressed: !settings.controls.meanOnlyExpressed
|
|
110
|
-
});
|
|
111
|
-
}
|
|
112
|
-
}))));
|
|
133
|
+
});
|
|
113
134
|
}
|
|
@@ -1,140 +1,196 @@
|
|
|
1
|
-
const _excluded = ["
|
|
2
|
-
function
|
|
1
|
+
const _excluded = ["searchDiseases", "defaultPlotType"];
|
|
2
|
+
function ownKeys(e, r) { var t = Object.keys(e); if (Object.getOwnPropertySymbols) { var o = Object.getOwnPropertySymbols(e); r && (o = o.filter(function (r) { return Object.getOwnPropertyDescriptor(e, r).enumerable; })), t.push.apply(t, o); } return t; }
|
|
3
|
+
function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t = null != arguments[r] ? arguments[r] : {}; r % 2 ? ownKeys(Object(t), !0).forEach(function (r) { _defineProperty(e, r, t[r]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(e, Object.getOwnPropertyDescriptors(t)) : ownKeys(Object(t)).forEach(function (r) { Object.defineProperty(e, r, Object.getOwnPropertyDescriptor(t, r)); }); } return e; }
|
|
4
|
+
function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
|
|
5
|
+
function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == typeof i ? i : i + ""; }
|
|
6
|
+
function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
|
|
3
7
|
function _objectWithoutProperties(e, t) { if (null == e) return {}; var o, r, i = _objectWithoutPropertiesLoose(e, t); if (Object.getOwnPropertySymbols) { var n = Object.getOwnPropertySymbols(e); for (r = 0; r < n.length; r++) o = n[r], -1 === t.indexOf(o) && {}.propertyIsEnumerable.call(e, o) && (i[o] = e[o]); } return i; }
|
|
4
8
|
function _objectWithoutPropertiesLoose(r, e) { if (null == r) return {}; var t = {}; for (var n in r) if ({}.hasOwnProperty.call(r, n)) { if (-1 !== e.indexOf(n)) continue; t[n] = r[n]; } return t; }
|
|
5
|
-
import
|
|
6
|
-
import {
|
|
7
|
-
import {
|
|
8
|
-
import {
|
|
9
|
-
import {
|
|
10
|
-
import {
|
|
11
|
-
import {
|
|
12
|
-
import {
|
|
13
|
-
import {
|
|
14
|
-
import {
|
|
15
|
-
import {
|
|
16
|
-
import {
|
|
17
|
-
import {
|
|
18
|
-
import {
|
|
9
|
+
import { useEffect, useMemo, useState } from 'react';
|
|
10
|
+
import { useMediaQuery } from '@mui/material';
|
|
11
|
+
import { Card, Container, Modal } from 'react-bootstrap';
|
|
12
|
+
import { BREAKPOINTS, PLOT_TYPES, SELECTION_MODES, VIOLIN_MODES } from '../../constants/constants';
|
|
13
|
+
import { DatasetProvider } from '../../context/DatasetContext';
|
|
14
|
+
import { Dotplot } from '../dotplot/Dotplot';
|
|
15
|
+
import { DotplotControls } from '../dotplot/DotplotControls';
|
|
16
|
+
import { Heatmap } from '../heatmap/Heatmap';
|
|
17
|
+
import { HeatmapControls } from '../heatmap/HeatmapControls';
|
|
18
|
+
import { Matrixplot } from '../matrixplot/Matrixplot';
|
|
19
|
+
import { MatrixplotControls } from '../matrixplot/MatrixplotControls';
|
|
20
|
+
import { ObsColsList } from '../obs-list/ObsList';
|
|
21
|
+
import { OffcanvasControls, OffcanvasObs, OffcanvasObsm, OffcanvasVars } from '../offcanvas';
|
|
22
|
+
import { PlotTypeSelector } from './PlotTypeSelector';
|
|
23
|
+
import { Pseudospatial } from '../pseudospatial/Pseudospatial';
|
|
24
|
+
import { PseudospatialToolbar } from '../pseudospatial/PseudospatialToolbar';
|
|
25
|
+
import { Scatterplot } from '../scatterplot/Scatterplot';
|
|
26
|
+
import { ScatterplotControls } from '../scatterplot/ScatterplotControls';
|
|
27
|
+
import { SearchBar } from '../search-bar/SearchBar';
|
|
28
|
+
import { VarNamesList } from '../var-list/VarList';
|
|
29
|
+
import { Violin } from '../violin/Violin';
|
|
30
|
+
import { ViolinControls } from '../violin/ViolinControls';
|
|
31
|
+
import { jsx as _jsx, Fragment as _Fragment, jsxs as _jsxs } from "react/jsx-runtime";
|
|
19
32
|
export function FullPage(_ref) {
|
|
20
33
|
let {
|
|
21
|
-
|
|
22
|
-
|
|
23
|
-
searchDiseases = false
|
|
34
|
+
searchDiseases = true,
|
|
35
|
+
defaultPlotType = PLOT_TYPES.SCATTERPLOT
|
|
24
36
|
} = _ref,
|
|
25
37
|
props = _objectWithoutProperties(_ref, _excluded);
|
|
26
|
-
const appRef = useRef();
|
|
27
|
-
const [appDimensions, setAppDimensions] = useState({
|
|
28
|
-
width: 0,
|
|
29
|
-
height: 0
|
|
30
|
-
});
|
|
31
38
|
const [showObs, setShowObs] = useState(false);
|
|
32
39
|
const [showObsm, setShowObsm] = useState(false);
|
|
33
40
|
const [showVars, setShowVars] = useState(false);
|
|
34
41
|
const [showControls, setShowControls] = useState(false);
|
|
35
42
|
const [showModal, setShowModal] = useState(false);
|
|
43
|
+
const [plotType, setPlotType] = useState(defaultPlotType || PLOT_TYPES.SCATTERPLOT);
|
|
44
|
+
const [showPseudospatialControls, setShowPseudospatialControls] = useState(false);
|
|
45
|
+
const [pseudospatialPlotType, setpseudospatialPlotType] = useState(null);
|
|
46
|
+
const {
|
|
47
|
+
isPseudospatial = false
|
|
48
|
+
} = props;
|
|
36
49
|
useEffect(() => {
|
|
37
|
-
|
|
38
|
-
|
|
39
|
-
|
|
40
|
-
|
|
41
|
-
|
|
42
|
-
|
|
43
|
-
|
|
44
|
-
|
|
45
|
-
|
|
46
|
-
|
|
47
|
-
|
|
48
|
-
|
|
49
|
-
|
|
50
|
-
|
|
51
|
-
|
|
52
|
-
}
|
|
53
|
-
|
|
54
|
-
|
|
55
|
-
|
|
56
|
-
|
|
57
|
-
|
|
58
|
-
|
|
59
|
-
|
|
60
|
-
|
|
61
|
-
|
|
62
|
-
}
|
|
63
|
-
|
|
64
|
-
|
|
65
|
-
|
|
66
|
-
|
|
67
|
-
|
|
50
|
+
setPlotType(defaultPlotType || PLOT_TYPES.SCATTERPLOT);
|
|
51
|
+
}, [defaultPlotType]);
|
|
52
|
+
const LgBreakpoint = useMediaQuery(BREAKPOINTS.LG);
|
|
53
|
+
const XlBreakpoint = useMediaQuery(BREAKPOINTS.XL);
|
|
54
|
+
const showObsBtn = LgBreakpoint;
|
|
55
|
+
const showVarsBtn = XlBreakpoint;
|
|
56
|
+
const {
|
|
57
|
+
plotControls,
|
|
58
|
+
varMode,
|
|
59
|
+
showSelectedAsActive
|
|
60
|
+
} = {
|
|
61
|
+
[PLOT_TYPES.SCATTERPLOT]: {
|
|
62
|
+
plotControls: ScatterplotControls,
|
|
63
|
+
varMode: SELECTION_MODES.SINGLE,
|
|
64
|
+
showSelectedAsActive: false
|
|
65
|
+
},
|
|
66
|
+
[PLOT_TYPES.DOTPLOT]: {
|
|
67
|
+
plotControls: DotplotControls,
|
|
68
|
+
varMode: SELECTION_MODES.MULTIPLE,
|
|
69
|
+
showSelectedAsActive: true
|
|
70
|
+
},
|
|
71
|
+
[PLOT_TYPES.MATRIXPLOT]: {
|
|
72
|
+
plotControls: MatrixplotControls,
|
|
73
|
+
varMode: SELECTION_MODES.MULTIPLE,
|
|
74
|
+
showSelectedAsActive: true
|
|
75
|
+
},
|
|
76
|
+
[PLOT_TYPES.HEATMAP]: {
|
|
77
|
+
plotControls: HeatmapControls,
|
|
78
|
+
varMode: SELECTION_MODES.MULTIPLE,
|
|
79
|
+
showSelectedAsActive: true
|
|
80
|
+
},
|
|
81
|
+
[PLOT_TYPES.VIOLINPLOT]: {
|
|
82
|
+
plotControls: ViolinControls,
|
|
83
|
+
varMode: SELECTION_MODES.MULTIPLE,
|
|
84
|
+
showSelectedAsActive: false
|
|
68
85
|
}
|
|
69
|
-
}
|
|
70
|
-
|
|
71
|
-
|
|
72
|
-
|
|
73
|
-
|
|
74
|
-
|
|
75
|
-
|
|
76
|
-
})), /*#__PURE__*/React.createElement("div", {
|
|
77
|
-
className: "cherita-app-sidebar p-3"
|
|
78
|
-
}, /*#__PURE__*/React.createElement(Card, null, /*#__PURE__*/React.createElement(Card.Body, {
|
|
79
|
-
className: "d-flex flex-column p-0"
|
|
80
|
-
}, /*#__PURE__*/React.createElement("div", {
|
|
81
|
-
className: "sidebar-features modern-scrollbars"
|
|
82
|
-
}, /*#__PURE__*/React.createElement(SearchBar, {
|
|
83
|
-
searchDiseases: searchDiseases,
|
|
84
|
-
searchVar: true
|
|
85
|
-
}), /*#__PURE__*/React.createElement(VarNamesList, {
|
|
86
|
-
mode: varMode
|
|
87
|
-
})))))), /*#__PURE__*/React.createElement("div", null, /*#__PURE__*/React.createElement(Modal, {
|
|
88
|
-
show: showModal,
|
|
89
|
-
onHide: () => setShowModal(false),
|
|
90
|
-
centered: true
|
|
91
|
-
}, /*#__PURE__*/React.createElement(Modal.Header, {
|
|
92
|
-
closeButton: true
|
|
93
|
-
}), /*#__PURE__*/React.createElement(Modal.Body, null)), /*#__PURE__*/React.createElement(OffcanvasObs, {
|
|
94
|
-
show: showObs,
|
|
95
|
-
handleClose: () => setShowObs(false)
|
|
96
|
-
}), /*#__PURE__*/React.createElement(OffcanvasVars, {
|
|
97
|
-
show: showVars,
|
|
98
|
-
handleClose: () => setShowVars(false),
|
|
99
|
-
mode: varMode
|
|
100
|
-
}), /*#__PURE__*/React.createElement(OffcanvasControls, {
|
|
101
|
-
show: showControls,
|
|
102
|
-
handleClose: () => setShowControls(false),
|
|
103
|
-
Controls: ScatterplotControls
|
|
104
|
-
}), /*#__PURE__*/React.createElement(OffcanvasObsm, {
|
|
105
|
-
show: showObsm,
|
|
106
|
-
handleClose: () => setShowObsm(false)
|
|
107
|
-
}))));
|
|
108
|
-
}
|
|
109
|
-
export function FullPageScatterplot(props) {
|
|
110
|
-
return /*#__PURE__*/React.createElement(FullPage, _extends({}, props, {
|
|
111
|
-
varMode: SELECTION_MODES.SINGLE
|
|
112
|
-
}), _ref2 => {
|
|
113
|
-
let {
|
|
86
|
+
}[plotType];
|
|
87
|
+
const plot = useMemo(() => {
|
|
88
|
+
const commonProps = {
|
|
89
|
+
showObsBtn,
|
|
90
|
+
showVarsBtn,
|
|
91
|
+
showCtrlsBtn: true,
|
|
92
|
+
plotType,
|
|
114
93
|
setShowObs,
|
|
115
|
-
setShowVars
|
|
116
|
-
|
|
117
|
-
|
|
118
|
-
|
|
119
|
-
|
|
120
|
-
|
|
121
|
-
|
|
94
|
+
setShowVars,
|
|
95
|
+
setShowControls,
|
|
96
|
+
setPlotType
|
|
97
|
+
};
|
|
98
|
+
switch (plotType) {
|
|
99
|
+
case PLOT_TYPES.DOTPLOT:
|
|
100
|
+
return /*#__PURE__*/_jsx(Dotplot, _objectSpread({}, commonProps));
|
|
101
|
+
case PLOT_TYPES.MATRIXPLOT:
|
|
102
|
+
return /*#__PURE__*/_jsx(Matrixplot, _objectSpread({}, commonProps));
|
|
103
|
+
case PLOT_TYPES.HEATMAP:
|
|
104
|
+
return /*#__PURE__*/_jsx(Heatmap, _objectSpread({}, commonProps));
|
|
105
|
+
case PLOT_TYPES.VIOLINPLOT:
|
|
106
|
+
return /*#__PURE__*/_jsx(Violin, _objectSpread({
|
|
107
|
+
mode: VIOLIN_MODES.MULTIKEY
|
|
108
|
+
}, commonProps));
|
|
109
|
+
case PLOT_TYPES.SCATTERPLOT:
|
|
110
|
+
default:
|
|
111
|
+
return /*#__PURE__*/_jsx(Scatterplot, _objectSpread(_objectSpread({}, commonProps), {}, {
|
|
112
|
+
isFullscreen: true
|
|
113
|
+
}));
|
|
114
|
+
}
|
|
115
|
+
}, [plotType, showObsBtn, showVarsBtn]);
|
|
116
|
+
return /*#__PURE__*/_jsx("div", {
|
|
117
|
+
className: "cherita-app",
|
|
118
|
+
children: /*#__PURE__*/_jsxs(DatasetProvider, _objectSpread(_objectSpread({}, props), {}, {
|
|
119
|
+
children: [/*#__PURE__*/_jsxs(Container, {
|
|
120
|
+
fluid: true,
|
|
121
|
+
className: "cherita-app-container",
|
|
122
|
+
children: [/*#__PURE__*/_jsx("div", {
|
|
123
|
+
className: "cherita-app-obs modern-scrollbars border-end h-100",
|
|
124
|
+
children: /*#__PURE__*/_jsx(ObsColsList, _objectSpread(_objectSpread({}, props), {}, {
|
|
125
|
+
showSelectedAsActive: showSelectedAsActive,
|
|
126
|
+
showHistograms: varMode === SELECTION_MODES.SINGLE,
|
|
127
|
+
showColor: varMode === SELECTION_MODES.SINGLE
|
|
128
|
+
}))
|
|
129
|
+
}), /*#__PURE__*/_jsx("div", {
|
|
130
|
+
className: "cherita-app-canvas",
|
|
131
|
+
children: plot
|
|
132
|
+
}), /*#__PURE__*/_jsx("div", {
|
|
133
|
+
className: "cherita-app-sidebar p-3",
|
|
134
|
+
children: /*#__PURE__*/_jsx(Card, {
|
|
135
|
+
children: /*#__PURE__*/_jsxs(Card.Body, {
|
|
136
|
+
children: [/*#__PURE__*/_jsx("div", {
|
|
137
|
+
className: "plotselector",
|
|
138
|
+
children: /*#__PURE__*/_jsx(PlotTypeSelector, {
|
|
139
|
+
currentType: plotType,
|
|
140
|
+
onChange: type => setPlotType(type)
|
|
141
|
+
})
|
|
142
|
+
}), plotType === PLOT_TYPES.SCATTERPLOT && isPseudospatial ? /*#__PURE__*/_jsx("div", {
|
|
143
|
+
className: "sidebar-pseudospatial",
|
|
144
|
+
children: /*#__PURE__*/_jsx(Pseudospatial, {
|
|
145
|
+
plotType: pseudospatialPlotType,
|
|
146
|
+
setPlotType: setpseudospatialPlotType,
|
|
147
|
+
setShowControls: setShowPseudospatialControls
|
|
148
|
+
})
|
|
149
|
+
}) : /*#__PURE__*/_jsx(_Fragment, {}), /*#__PURE__*/_jsxs("div", {
|
|
150
|
+
className: "sidebar-features",
|
|
151
|
+
children: [/*#__PURE__*/_jsx(SearchBar, {
|
|
152
|
+
searchDiseases: searchDiseases,
|
|
153
|
+
searchVar: true
|
|
154
|
+
}), /*#__PURE__*/_jsx("div", {
|
|
155
|
+
className: "sidebar-features-list",
|
|
156
|
+
children: /*#__PURE__*/_jsx(VarNamesList, {
|
|
157
|
+
mode: varMode
|
|
158
|
+
})
|
|
159
|
+
})]
|
|
160
|
+
})]
|
|
161
|
+
})
|
|
162
|
+
})
|
|
163
|
+
})]
|
|
164
|
+
}), /*#__PURE__*/_jsxs("div", {
|
|
165
|
+
children: [/*#__PURE__*/_jsxs(Modal, {
|
|
166
|
+
show: showModal,
|
|
167
|
+
onHide: () => setShowModal(false),
|
|
168
|
+
centered: true,
|
|
169
|
+
children: [/*#__PURE__*/_jsx(Modal.Header, {
|
|
170
|
+
closeButton: true
|
|
171
|
+
}), /*#__PURE__*/_jsx(Modal.Body, {})]
|
|
172
|
+
}), /*#__PURE__*/_jsx(OffcanvasObs, _objectSpread(_objectSpread({}, props), {}, {
|
|
173
|
+
showSelectedAsActive: showSelectedAsActive,
|
|
174
|
+
show: showObs,
|
|
175
|
+
handleClose: () => setShowObs(false)
|
|
176
|
+
})), /*#__PURE__*/_jsx(OffcanvasVars, {
|
|
177
|
+
show: showVars,
|
|
178
|
+
handleClose: () => setShowVars(false),
|
|
179
|
+
mode: varMode
|
|
180
|
+
}), plotControls && /*#__PURE__*/_jsx(OffcanvasControls, {
|
|
181
|
+
show: showControls,
|
|
182
|
+
handleClose: () => setShowControls(false),
|
|
183
|
+
Controls: plotControls
|
|
184
|
+
}), /*#__PURE__*/_jsx(OffcanvasObsm, {
|
|
185
|
+
show: showObsm,
|
|
186
|
+
handleClose: () => setShowObsm(false)
|
|
187
|
+
}), /*#__PURE__*/_jsx(OffcanvasControls, {
|
|
188
|
+
show: showPseudospatialControls,
|
|
189
|
+
handleClose: () => setShowPseudospatialControls(false),
|
|
190
|
+
Controls: PseudospatialToolbar,
|
|
191
|
+
plotType: pseudospatialPlotType
|
|
192
|
+
})]
|
|
193
|
+
})]
|
|
194
|
+
}))
|
|
122
195
|
});
|
|
123
|
-
}
|
|
124
|
-
export function FullPagePlots(props) {
|
|
125
|
-
return /*#__PURE__*/React.createElement(FullPage, _extends({}, props, {
|
|
126
|
-
varMode: SELECTION_MODES.MULTIPLE
|
|
127
|
-
}), /*#__PURE__*/React.createElement("div", {
|
|
128
|
-
className: "container-fluid w-100 h-100 d-flex flex-column overflow-y-auto"
|
|
129
|
-
}, /*#__PURE__*/React.createElement("div", {
|
|
130
|
-
className: "row flex-grow-1"
|
|
131
|
-
}, /*#__PURE__*/React.createElement(Heatmap, null)), /*#__PURE__*/React.createElement("div", {
|
|
132
|
-
className: "row flex-grow-1"
|
|
133
|
-
}, /*#__PURE__*/React.createElement(Matrixplot, null)), /*#__PURE__*/React.createElement("div", {
|
|
134
|
-
className: "row flex-grow-1"
|
|
135
|
-
}, /*#__PURE__*/React.createElement(Dotplot, null)), /*#__PURE__*/React.createElement("div", {
|
|
136
|
-
className: "row flex-grow-1"
|
|
137
|
-
}, /*#__PURE__*/React.createElement(Violin, {
|
|
138
|
-
mode: VIOLIN_MODES.GROUPBY
|
|
139
|
-
}))));
|
|
140
196
|
}
|
|
@@ -0,0 +1,39 @@
|
|
|
1
|
+
import { useMediaQuery } from '@mui/material';
|
|
2
|
+
import { Alert } from 'react-bootstrap';
|
|
3
|
+
import { PlotTypeSelector } from './PlotTypeSelector';
|
|
4
|
+
import { BREAKPOINTS, PLOT_TYPES } from '../../constants/constants';
|
|
5
|
+
import { jsx as _jsx, jsxs as _jsxs, Fragment as _Fragment } from "react/jsx-runtime";
|
|
6
|
+
export function PlotAlert(_ref) {
|
|
7
|
+
let {
|
|
8
|
+
variant = 'warning',
|
|
9
|
+
plotType = PLOT_TYPES.SCATTERPLOT,
|
|
10
|
+
setPlotType,
|
|
11
|
+
heading,
|
|
12
|
+
children
|
|
13
|
+
} = _ref;
|
|
14
|
+
const XlBreakpoint = useMediaQuery(BREAKPOINTS.XL);
|
|
15
|
+
const showPlotSelector = XlBreakpoint;
|
|
16
|
+
return /*#__PURE__*/_jsxs(_Fragment, {
|
|
17
|
+
children: [showPlotSelector && /*#__PURE__*/_jsx("div", {
|
|
18
|
+
className: "plotselector",
|
|
19
|
+
children: /*#__PURE__*/_jsx(PlotTypeSelector, {
|
|
20
|
+
currentType: plotType,
|
|
21
|
+
onChange: type => {
|
|
22
|
+
if (setPlotType) setPlotType(type);
|
|
23
|
+
}
|
|
24
|
+
})
|
|
25
|
+
}), /*#__PURE__*/_jsx("div", {
|
|
26
|
+
className: "cherita-plot-alert h-100",
|
|
27
|
+
children: /*#__PURE__*/_jsx("div", {
|
|
28
|
+
className: "w-100 h-100 d-flex justify-content-center align-items-center",
|
|
29
|
+
children: /*#__PURE__*/_jsxs(Alert, {
|
|
30
|
+
variant: variant,
|
|
31
|
+
className: "m-0 w-75 w-lg-50 text-center",
|
|
32
|
+
children: [heading && /*#__PURE__*/_jsx(Alert.Heading, {
|
|
33
|
+
children: heading
|
|
34
|
+
}), " ", children]
|
|
35
|
+
})
|
|
36
|
+
})
|
|
37
|
+
})]
|
|
38
|
+
});
|
|
39
|
+
}
|