@haniffalab/cherita-react 1.3.0 → 1.3.1-dev.2025-10-29.6de4119f

package/dist/cjs/components/heatmap/Heatmap.js

@@ -4,25 +4,38 @@ Object.defineProperty(exports, "__esModule", {
   value: true
 });
 exports.Heatmap = Heatmap;
-var _react = _interopRequireWildcard(require("react"));
+var _react = require("react");
 var _lodash = _interopRequireDefault(require("lodash"));
 var _reactBootstrap = require("react-bootstrap");
 var _reactPlotly = _interopRequireDefault(require("react-plotly.js"));
+var _constants = require("../../constants/constants");
 var _DatasetContext = require("../../context/DatasetContext");
 var _FilterContext = require("../../context/FilterContext");
 var _SettingsContext = require("../../context/SettingsContext");
 var _LoadingIndicators = require("../../utils/LoadingIndicators");
 var _requests = require("../../utils/requests");
+var _Resolver = require("../../utils/Resolver");
+var _PlotAlert = require("../full-page/PlotAlert");
+var _Toolbar = require("../toolbar/Toolbar");
+var _jsxRuntime = require("react/jsx-runtime");
 function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
-function _interopRequireWildcard(e, t) { if ("function" == typeof WeakMap) var r = new WeakMap(), n = new WeakMap(); return (_interopRequireWildcard = function (e, t) { if (!t && e && e.__esModule) return e; var o, i, f = { __proto__: null, default: e }; if (null === e || "object" != typeof e && "function" != typeof e) return f; if (o = t ? n : r) { if (o.has(e)) return o.get(e); o.set(e, f); } for (const t in e) "default" !== t && {}.hasOwnProperty.call(e, t) && ((i = (o = Object.defineProperty) && Object.getOwnPropertyDescriptor(e, t)) && (i.get || i.set) ? o(f, t, i) : f[t] = e[t]); return f; })(e, t); }
 function ownKeys(e, r) { var t = Object.keys(e); if (Object.getOwnPropertySymbols) { var o = Object.getOwnPropertySymbols(e); r && (o = o.filter(function (r) { return Object.getOwnPropertyDescriptor(e, r).enumerable; })), t.push.apply(t, o); } return t; }
 function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t = null != arguments[r] ? arguments[r] : {}; r % 2 ? ownKeys(Object(t), !0).forEach(function (r) { _defineProperty(e, r, t[r]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(e, Object.getOwnPropertyDescriptors(t)) : ownKeys(Object(t)).forEach(function (r) { Object.defineProperty(e, r, Object.getOwnPropertyDescriptor(t, r)); }); } return e; }
 function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
 function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == typeof i ? i : i + ""; }
 function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
-function Heatmap() {
-  var _settings$selectedObs, _settings$selectedObs2, _settings$selectedObs3;
-  const ENDPOINT = "heatmap";
+function Heatmap(_ref) {
+  let {
+    showObsBtn = false,
+    showVarsBtn = false,
+    showCtrlsBtn = false,
+    setShowObs,
+    setShowVars,
+    setShowControls,
+    plotType,
+    setPlotType
+  } = _ref;
+  const ENDPOINT = 'heatmap';
   const dataset = (0, _DatasetContext.useDataset)();
   const settings = (0, _SettingsContext.useSettings)();
   const {
@@ -33,44 +46,26 @@ function Heatmap() {
   const [data, setData] = (0, _react.useState)([]);
   const [layout, setLayout] = (0, _react.useState)({});
   const [hasSelections, setHasSelections] = (0, _react.useState)(false);
-  const [params, setParams] = (0, _react.useState)({
+  const selectedObs = (0, _Resolver.useSelectedObs)();
+  const selectedMultiVar = (0, _Resolver.useSelectedMultiVar)();
+  const params = (0, _react.useMemo)(() => ({
     url: dataset.url,
-    obsCol: settings.selectedObs,
-    obsValues: !((_settings$selectedObs = settings.selectedObs) !== null && _settings$selectedObs !== void 0 && _settings$selectedObs.omit.length) ? null : _lodash.default.difference(_lodash.default.values((_settings$selectedObs2 = settings.selectedObs) === null || _settings$selectedObs2 === void 0 ? void 0 : _settings$selectedObs2.codes), (_settings$selectedObs3 = settings.selectedObs) === null || _settings$selectedObs3 === void 0 ? void 0 : _settings$selectedObs3.omit).map(c => {
-      var _settings$selectedObs4;
-      return (_settings$selectedObs4 = settings.selectedObs) === null || _settings$selectedObs4 === void 0 ? void 0 : _settings$selectedObs4.codesMap[c];
-    }),
-    varKeys: settings.selectedMultiVar.map(i => i.isSet ? {
+    obsCol: selectedObs,
+    obsValues: !(selectedObs !== null && selectedObs !== void 0 && selectedObs.omit.length) ? null : _lodash.default.difference(selectedObs === null || selectedObs === void 0 ? void 0 : selectedObs.values, selectedObs === null || selectedObs === void 0 ? void 0 : selectedObs.omit),
+    varKeys: selectedMultiVar.map(i => i.isSet ? {
       name: i.name,
       indices: i.vars.map(v => v.index)
     } : i.index),
     obsIndices: isSliced ? [...(obsIndices || [])] : null,
     varNamesCol: dataset.varNamesCol
-  });
+  }), [dataset.url, dataset.varNamesCol, isSliced, obsIndices, selectedMultiVar, selectedObs]);
   (0, _react.useEffect)(() => {
-    if (settings.selectedObs && settings.selectedMultiVar.length) {
+    if (selectedObs && selectedMultiVar.length) {
       setHasSelections(true);
     } else {
       setHasSelections(false);
     }
-    setParams(p => {
-      var _settings$selectedObs5, _settings$selectedObs6, _settings$selectedObs7;
-      return _objectSpread(_objectSpread({}, p), {}, {
-        url: dataset.url,
-        obsCol: settings.selectedObs,
-        obsValues: !((_settings$selectedObs5 = settings.selectedObs) !== null && _settings$selectedObs5 !== void 0 && _settings$selectedObs5.omit.length) ? null : _lodash.default.difference(_lodash.default.values((_settings$selectedObs6 = settings.selectedObs) === null || _settings$selectedObs6 === void 0 ? void 0 : _settings$selectedObs6.codes), (_settings$selectedObs7 = settings.selectedObs) === null || _settings$selectedObs7 === void 0 ? void 0 : _settings$selectedObs7.omit).map(c => {
-          var _settings$selectedObs8;
-          return (_settings$selectedObs8 = settings.selectedObs) === null || _settings$selectedObs8 === void 0 ? void 0 : _settings$selectedObs8.codesMap[c];
-        }),
-        varKeys: settings.selectedMultiVar.map(i => i.isSet ? {
-          name: i.name,
-          indices: i.vars.map(v => v.index)
-        } : i.index),
-        obsIndices: isSliced ? [...(obsIndices || [])] : null,
-        varNamesCol: dataset.varNamesCol
-      });
-    });
-  }, [settings.selectedMultiVar, settings.selectedObs, dataset.url, dataset.varNamesCol, obsIndices, isSliced]);
+  }, [selectedMultiVar, selectedObs, dataset.url, dataset.varNamesCol, obsIndices, isSliced]);
   const updateColorscale = (0, _react.useCallback)(colorscale => {
     setLayout(l => {
       return _objectSpread(_objectSpread({}, l), {}, {
@@ -85,41 +80,76 @@ function Heatmap() {
     isPending,
     serverError
   } = (0, _requests.useDebouncedFetch)(ENDPOINT, params, 500, {
-    enabled: !!params.obsCol && !!params.varKeys.length
+    isEnabled: params => !!params.obsCol && !!params.varKeys.length
   });
   (0, _react.useEffect)(() => {
-    if (hasSelections && !isPending && !serverError) {
+    if (hasSelections && !!fetchedData && !isPending && !serverError) {
       setData(fetchedData.data);
       setLayout(fetchedData.layout);
       updateColorscale(colorscale.current);
+    } else {
+      setData([]);
+      setLayout({});
     }
   }, [fetchedData, hasSelections, isPending, serverError, updateColorscale]);
   (0, _react.useEffect)(() => {
     colorscale.current = settings.controls.colorScale;
     updateColorscale(colorscale.current);
   }, [settings.controls.colorScale, updateColorscale]);
+  const customModeBarButtons = _lodash.default.compact([showObsBtn && (0, _Toolbar.ObsPlotlyToolbar)({
+    onClick: setShowObs
+  }), showVarsBtn && (0, _Toolbar.VarPlotlyToolbar)({
+    onClick: setShowVars
+  }), showCtrlsBtn && (0, _Toolbar.ControlsPlotlyToolbar)({
+    onClick: setShowControls
+  })]);
+  const modeBarButtons = customModeBarButtons.length ? [customModeBarButtons, _constants.PLOTLY_MODEBAR_BUTTONS] : [_constants.PLOTLY_MODEBAR_BUTTONS];
   if (!serverError) {
     if (hasSelections) {
-      return /*#__PURE__*/_react.default.createElement("div", {
-        className: "cherita-heatmap position-relative"
-      }, isPending && /*#__PURE__*/_react.default.createElement(_LoadingIndicators.LoadingSpinner, null), /*#__PURE__*/_react.default.createElement(_reactPlotly.default, {
-        data: data,
-        layout: layout,
-        useResizeHandler: true,
-        style: {
-          maxWidth: "100%",
-          maxHeight: "100%"
-        }
-      }));
+      return /*#__PURE__*/(0, _jsxRuntime.jsxs)("div", {
+        className: "cherita-plot cherita-heatmap position-relative",
+        children: [isPending && /*#__PURE__*/(0, _jsxRuntime.jsx)(_LoadingIndicators.LoadingSpinner, {}), /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactPlotly.default, {
+          data: data,
+          layout: layout,
+          useResizeHandler: true,
+          style: {
+            width: '100%',
+            height: '100%'
+          },
+          config: {
+            displaylogo: false,
+            modeBarButtons: modeBarButtons
+          }
+        })]
+      });
     }
-    return /*#__PURE__*/_react.default.createElement("div", {
-      className: "cherita-heatmap"
-    }, /*#__PURE__*/_react.default.createElement(_reactBootstrap.Alert, {
-      variant: "light"
-    }, "Select features and a category"));
+    return /*#__PURE__*/(0, _jsxRuntime.jsx)(_PlotAlert.PlotAlert, {
+      variant: "info",
+      heading: "Set up your heatmap",
+      plotType: plotType,
+      setPlotType: setPlotType,
+      children: /*#__PURE__*/(0, _jsxRuntime.jsxs)("p", {
+        className: "p-0 m-0",
+        children: ["Select one or more", ' ', showVarsBtn ? /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.Button, {
+          variant: "link",
+          className: "border-0 p-0 align-baseline",
+          onClick: setShowVars,
+          children: "features"
+        }) : 'features', ' ', "to display their expression, then choose a", ' ', showObsBtn ? /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.Button, {
+          variant: "link",
+          className: "border-0 p-0 align-baseline",
+          onClick: setShowObs,
+          children: "category"
+        }) : 'category', ' ', "to group observations in the heatmap."]
+      })
+    });
   } else {
-    return /*#__PURE__*/_react.default.createElement("div", null, /*#__PURE__*/_react.default.createElement(_reactBootstrap.Alert, {
-      variant: "danger"
-    }, serverError.message));
+    return /*#__PURE__*/(0, _jsxRuntime.jsx)(_PlotAlert.PlotAlert, {
+      variant: "danger",
+      heading: "Error displaying the heatmap",
+      plotType: plotType,
+      setPlotType: setPlotType,
+      children: serverError.message || 'An unexpected error occurred while generating the plot.'
+    });
   }
 }

package/dist/cjs/components/heatmap/HeatmapControls.js

@@ -4,10 +4,13 @@ Object.defineProperty(exports, "__esModule", {
   value: true
 });
 exports.HeatmapControls = HeatmapControls;
-var _react = _interopRequireDefault(require("react"));
 var _reactBootstrap = require("react-bootstrap");
 var _Controls = require("../controls/Controls");
-function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
+var _jsxRuntime = require("react/jsx-runtime");
 function HeatmapControls() {
-  return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, /*#__PURE__*/_react.default.createElement(_reactBootstrap.Form, null, /*#__PURE__*/_react.default.createElement(_Controls.ColorscaleSelect, null)));
+  return /*#__PURE__*/(0, _jsxRuntime.jsx)(_jsxRuntime.Fragment, {
+    children: /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.Form, {
+      children: /*#__PURE__*/(0, _jsxRuntime.jsx)(_Controls.ColorscaleSelect, {})
+    })
+  });
 }

package/dist/cjs/components/icons/DotPlotIcon.js

@@ -0,0 +1,64 @@
+"use strict";
+
+Object.defineProperty(exports, "__esModule", {
+  value: true
+});
+exports.default = DotPlotIcon;
+var _jsxRuntime = require("react/jsx-runtime");
+const _excluded = ["size", "colour", "gap"];
+function ownKeys(e, r) { var t = Object.keys(e); if (Object.getOwnPropertySymbols) { var o = Object.getOwnPropertySymbols(e); r && (o = o.filter(function (r) { return Object.getOwnPropertyDescriptor(e, r).enumerable; })), t.push.apply(t, o); } return t; }
+function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t = null != arguments[r] ? arguments[r] : {}; r % 2 ? ownKeys(Object(t), !0).forEach(function (r) { _defineProperty(e, r, t[r]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(e, Object.getOwnPropertyDescriptors(t)) : ownKeys(Object(t)).forEach(function (r) { Object.defineProperty(e, r, Object.getOwnPropertyDescriptor(t, r)); }); } return e; }
+function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
+function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == typeof i ? i : i + ""; }
+function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
+function _objectWithoutProperties(e, t) { if (null == e) return {}; var o, r, i = _objectWithoutPropertiesLoose(e, t); if (Object.getOwnPropertySymbols) { var n = Object.getOwnPropertySymbols(e); for (r = 0; r < n.length; r++) o = n[r], -1 === t.indexOf(o) && {}.propertyIsEnumerable.call(e, o) && (i[o] = e[o]); } return i; }
+function _objectWithoutPropertiesLoose(r, e) { if (null == r) return {}; var t = {}; for (var n in r) if ({}.hasOwnProperty.call(r, n)) { if (-1 !== e.indexOf(n)) continue; t[n] = r[n]; } return t; }
+function DotPlotIcon(_ref) {
+  let {
+      size = 40,
+      colour = '#000',
+      gap = 20
+    } = _ref,
+    props = _objectWithoutProperties(_ref, _excluded);
+  const rows = 3;
+  const cols = 3;
+
+  // Define two radii: small and large
+  const smallR = 10;
+  const largeR = 16;
+
+  // Indices for large circles
+  const largeIndices = [1, 4, 5, 6, 7];
+
+  // Indices for semi-transparent circles
+  const semiTransparentIndices = [0, 4, 8];
+  const circles = [];
+  for (let row = 0; row < rows; row++) {
+    for (let col = 0; col < cols; col++) {
+      const index = row * cols + col;
+      const r = largeIndices.includes(index) ? largeR : smallR;
+      circles.push({
+        cx: col * (2 * largeR + gap) + largeR,
+        cy: row * (2 * largeR + gap) + largeR,
+        r,
+        fill: colour,
+        fillOpacity: semiTransparentIndices.includes(index) ? 0.5 : 1
+      });
+    }
+  }
+  const viewBoxSize = (cols - 1) * (2 * largeR + gap) + 2 * largeR;
+  return /*#__PURE__*/(0, _jsxRuntime.jsx)("svg", _objectSpread(_objectSpread({
+    width: size,
+    height: size,
+    viewBox: "0 0 ".concat(viewBoxSize, " ").concat(viewBoxSize),
+    xmlns: "http://www.w3.org/2000/svg"
+  }, props), {}, {
+    children: circles.map((circle, i) => /*#__PURE__*/(0, _jsxRuntime.jsx)("circle", {
+      cx: circle.cx,
+      cy: circle.cy,
+      r: circle.r,
+      fill: circle.fill,
+      fillOpacity: circle.fillOpacity
+    }, i))
+  }));
+}

package/dist/cjs/components/icons/HeatmapIcon.js

@@ -0,0 +1,45 @@
+"use strict";
+
+Object.defineProperty(exports, "__esModule", {
+  value: true
+});
+exports.default = HeatmapIcon;
+var _jsxRuntime = require("react/jsx-runtime");
+const _excluded = ["size", "colour", "gap"];
+function ownKeys(e, r) { var t = Object.keys(e); if (Object.getOwnPropertySymbols) { var o = Object.getOwnPropertySymbols(e); r && (o = o.filter(function (r) { return Object.getOwnPropertyDescriptor(e, r).enumerable; })), t.push.apply(t, o); } return t; }
+function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t = null != arguments[r] ? arguments[r] : {}; r % 2 ? ownKeys(Object(t), !0).forEach(function (r) { _defineProperty(e, r, t[r]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(e, Object.getOwnPropertyDescriptors(t)) : ownKeys(Object(t)).forEach(function (r) { Object.defineProperty(e, r, Object.getOwnPropertyDescriptor(t, r)); }); } return e; }
+function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
+function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == typeof i ? i : i + ""; }
+function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
+function _objectWithoutProperties(e, t) { if (null == e) return {}; var o, r, i = _objectWithoutPropertiesLoose(e, t); if (Object.getOwnPropertySymbols) { var n = Object.getOwnPropertySymbols(e); for (r = 0; r < n.length; r++) o = n[r], -1 === t.indexOf(o) && {}.propertyIsEnumerable.call(e, o) && (i[o] = e[o]); } return i; }
+function _objectWithoutPropertiesLoose(r, e) { if (null == r) return {}; var t = {}; for (var n in r) if ({}.hasOwnProperty.call(r, n)) { if (-1 !== e.indexOf(n)) continue; t[n] = r[n]; } return t; }
+function HeatmapIcon(_ref) {
+  let {
+      size = 40,
+      colour = '#000',
+      gap = 1
+    } = _ref,
+    props = _objectWithoutProperties(_ref, _excluded);
+  const rows = 6; // genes
+  const cols = 8; // cells
+
+  // Example expression pattern for visual clusters
+  const expressionLevels = [[1, 0.8, 0.2, 0.2, 0.5, 0.9, 1, 0.7], [0.9, 0.7, 0.1, 0.2, 0.4, 0.8, 0.9, 0.6], [0.1, 0.2, 0.8, 0.9, 0.7, 0.2, 0.1, 0.3], [0.2, 0.3, 0.9, 1, 0.8, 0.3, 0.2, 0.4], [0.5, 0.6, 0.2, 0.1, 0.9, 0.7, 0.6, 0.8], [0.6, 0.7, 0.3, 0.2, 0.8, 0.6, 0.7, 0.9]];
+  const cellWidth = (size - (cols - 1) * gap) / cols;
+  const cellHeight = (size - (rows - 1) * gap) / rows;
+  return /*#__PURE__*/(0, _jsxRuntime.jsx)("svg", _objectSpread(_objectSpread({
+    width: size,
+    height: size,
+    viewBox: "0 0 ".concat(size, " ").concat(size),
+    xmlns: "http://www.w3.org/2000/svg"
+  }, props), {}, {
+    children: expressionLevels.map((row, rowIndex) => row.map((value, colIndex) => /*#__PURE__*/(0, _jsxRuntime.jsx)("rect", {
+      x: colIndex * (cellWidth + gap),
+      y: rowIndex * (cellHeight + gap),
+      width: cellWidth,
+      height: cellHeight,
+      fill: colour,
+      fillOpacity: value
+    }, "".concat(rowIndex, "-").concat(colIndex))))
+  }));
+}

package/dist/cjs/components/icons/MatrixPlotIcon.1.js

@@ -0,0 +1,57 @@
+"use strict";
+
+Object.defineProperty(exports, "__esModule", {
+  value: true
+});
+exports.default = MatrixPlotIcon;
+var _jsxRuntime = require("react/jsx-runtime");
+const _excluded = ["size", "colour", "gap"];
+function ownKeys(e, r) { var t = Object.keys(e); if (Object.getOwnPropertySymbols) { var o = Object.getOwnPropertySymbols(e); r && (o = o.filter(function (r) { return Object.getOwnPropertyDescriptor(e, r).enumerable; })), t.push.apply(t, o); } return t; }
+function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t = null != arguments[r] ? arguments[r] : {}; r % 2 ? ownKeys(Object(t), !0).forEach(function (r) { _defineProperty(e, r, t[r]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(e, Object.getOwnPropertyDescriptors(t)) : ownKeys(Object(t)).forEach(function (r) { Object.defineProperty(e, r, Object.getOwnPropertyDescriptor(t, r)); }); } return e; }
+function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
+function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == typeof i ? i : i + ""; }
+function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
+function _objectWithoutProperties(e, t) { if (null == e) return {}; var o, r, i = _objectWithoutPropertiesLoose(e, t); if (Object.getOwnPropertySymbols) { var n = Object.getOwnPropertySymbols(e); for (r = 0; r < n.length; r++) o = n[r], -1 === t.indexOf(o) && {}.propertyIsEnumerable.call(e, o) && (i[o] = e[o]); } return i; }
+function _objectWithoutPropertiesLoose(r, e) { if (null == r) return {}; var t = {}; for (var n in r) if ({}.hasOwnProperty.call(r, n)) { if (-1 !== e.indexOf(n)) continue; t[n] = r[n]; } return t; }
+function MatrixPlotIcon(_ref) {
+  let {
+      size = 40,
+      colour = '#000',
+      gap = 2
+    } = _ref,
+    props = _objectWithoutProperties(_ref, _excluded);
+  const rows = 4;
+  const cols = 4;
+  const squareSize = (size - gap * (cols - 1)) / cols;
+  const squares = [];
+  for (let row = 0; row < rows; row++) {
+    for (let col = 0; col < cols; col++) {
+      squares.push({
+        x: col * (squareSize + gap),
+        y: row * (squareSize + gap)
+      });
+    }
+  }
+  const semiTransparentSquares = [0, 5, 10, 15];
+  return /*#__PURE__*/(0, _jsxRuntime.jsx)("svg", _objectSpread(_objectSpread({
+    width: size,
+    height: size,
+    viewBox: "0 0 ".concat(size, " ").concat(size),
+    xmlns: "http://www.w3.org/2000/svg"
+  }, props), {}, {
+    children: squares.map((_ref2, i) => {
+      let {
+        x,
+        y
+      } = _ref2;
+      return /*#__PURE__*/(0, _jsxRuntime.jsx)("rect", {
+        x: x,
+        y: y,
+        width: squareSize,
+        height: squareSize,
+        fill: colour,
+        fillOpacity: semiTransparentSquares.includes(i) ? 0.5 : 1
+      }, i);
+    })
+  }));
+}

package/dist/cjs/components/icons/MatrixPlotIcon.js

@@ -0,0 +1,59 @@
+"use strict";
+
+Object.defineProperty(exports, "__esModule", {
+  value: true
+});
+exports.default = MatrixPlotIcon;
+var _jsxRuntime = require("react/jsx-runtime");
+const _excluded = ["size", "colour", "gap"];
+function ownKeys(e, r) { var t = Object.keys(e); if (Object.getOwnPropertySymbols) { var o = Object.getOwnPropertySymbols(e); r && (o = o.filter(function (r) { return Object.getOwnPropertyDescriptor(e, r).enumerable; })), t.push.apply(t, o); } return t; }
+function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t = null != arguments[r] ? arguments[r] : {}; r % 2 ? ownKeys(Object(t), !0).forEach(function (r) { _defineProperty(e, r, t[r]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(e, Object.getOwnPropertyDescriptors(t)) : ownKeys(Object(t)).forEach(function (r) { Object.defineProperty(e, r, Object.getOwnPropertyDescriptor(t, r)); }); } return e; }
+function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
+function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == typeof i ? i : i + ""; }
+function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
+function _objectWithoutProperties(e, t) { if (null == e) return {}; var o, r, i = _objectWithoutPropertiesLoose(e, t); if (Object.getOwnPropertySymbols) { var n = Object.getOwnPropertySymbols(e); for (r = 0; r < n.length; r++) o = n[r], -1 === t.indexOf(o) && {}.propertyIsEnumerable.call(e, o) && (i[o] = e[o]); } return i; }
+function _objectWithoutPropertiesLoose(r, e) { if (null == r) return {}; var t = {}; for (var n in r) if ({}.hasOwnProperty.call(r, n)) { if (-1 !== e.indexOf(n)) continue; t[n] = r[n]; } return t; }
+function MatrixPlotIcon(_ref) {
+  let {
+      size = 40,
+      colour = '#000',
+      gap = 2
+    } = _ref,
+    props = _objectWithoutProperties(_ref, _excluded);
+  const rows = 3;
+  const cols = 3;
+  const squareSize = (size - gap * (cols - 1)) / cols;
+  const squares = [];
+  for (let row = 0; row < rows; row++) {
+    for (let col = 0; col < cols; col++) {
+      squares.push({
+        x: col * (squareSize + gap),
+        y: row * (squareSize + gap)
+      });
+    }
+  }
+
+  // Example: corners semi-transparent
+  const semiTransparentSquares = [0, 2, 6, 8];
+  return /*#__PURE__*/(0, _jsxRuntime.jsx)("svg", _objectSpread(_objectSpread({
+    width: size,
+    height: size,
+    viewBox: "0 0 ".concat(size, " ").concat(size),
+    xmlns: "http://www.w3.org/2000/svg"
+  }, props), {}, {
+    children: squares.map((_ref2, i) => {
+      let {
+        x,
+        y
+      } = _ref2;
+      return /*#__PURE__*/(0, _jsxRuntime.jsx)("rect", {
+        x: x,
+        y: y,
+        width: squareSize,
+        height: squareSize,
+        fill: colour,
+        fillOpacity: semiTransparentSquares.includes(i) ? 0.5 : 1
+      }, i);
+    })
+  }));
+}

package/dist/cjs/components/icons/ScatterplotIcon.1.js

@@ -0,0 +1,164 @@
+"use strict";
+
+Object.defineProperty(exports, "__esModule", {
+  value: true
+});
+exports.default = ScatterplotIcon;
+var _jsxRuntime = require("react/jsx-runtime");
+const _excluded = ["size", "colour"];
+function ownKeys(e, r) { var t = Object.keys(e); if (Object.getOwnPropertySymbols) { var o = Object.getOwnPropertySymbols(e); r && (o = o.filter(function (r) { return Object.getOwnPropertyDescriptor(e, r).enumerable; })), t.push.apply(t, o); } return t; }
+function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t = null != arguments[r] ? arguments[r] : {}; r % 2 ? ownKeys(Object(t), !0).forEach(function (r) { _defineProperty(e, r, t[r]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(e, Object.getOwnPropertyDescriptors(t)) : ownKeys(Object(t)).forEach(function (r) { Object.defineProperty(e, r, Object.getOwnPropertyDescriptor(t, r)); }); } return e; }
+function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
+function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == typeof i ? i : i + ""; }
+function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
+function _objectWithoutProperties(e, t) { if (null == e) return {}; var o, r, i = _objectWithoutPropertiesLoose(e, t); if (Object.getOwnPropertySymbols) { var n = Object.getOwnPropertySymbols(e); for (r = 0; r < n.length; r++) o = n[r], -1 === t.indexOf(o) && {}.propertyIsEnumerable.call(e, o) && (i[o] = e[o]); } return i; }
+function _objectWithoutPropertiesLoose(r, e) { if (null == r) return {}; var t = {}; for (var n in r) if ({}.hasOwnProperty.call(r, n)) { if (-1 !== e.indexOf(n)) continue; t[n] = r[n]; } return t; }
+function ScatterplotIcon(_ref) {
+  let {
+      size = 40,
+      colour = '#000'
+    } = _ref,
+    props = _objectWithoutProperties(_ref, _excluded);
+  // Points with cluster assignments
+  const points = [
+  // Cluster 0
+  {
+    x: 15.2,
+    y: 35.9,
+    cluster: 0
+  }, {
+    x: 10.0,
+    y: 38.0,
+    cluster: 0
+  }, {
+    x: 12.3,
+    y: 40.7,
+    cluster: 0
+  }, {
+    x: 15.7,
+    y: 39.9,
+    cluster: 0
+  }, {
+    x: 8.1,
+    y: 42.2,
+    cluster: 0
+  }, {
+    x: 10.8,
+    y: 44.5,
+    cluster: 0
+  }, {
+    x: 14.3,
+    y: 44.6,
+    cluster: 0
+  }, {
+    x: 7.4,
+    y: 46.7,
+    cluster: 0
+  }, {
+    x: 11.1,
+    y: 48.8,
+    cluster: 0
+  }, {
+    x: 14.8,
+    y: 48.5,
+    cluster: 0
+  }, {
+    x: 12.6,
+    y: 52.1,
+    cluster: 0
+  },
+  // Cluster 1
+  {
+    x: 29.4,
+    y: 37.0,
+    cluster: 1
+  }, {
+    x: 26.1,
+    y: 40.2,
+    cluster: 1
+  }, {
+    x: 29.8,
+    y: 42.0,
+    cluster: 1
+  }, {
+    x: 33.0,
+    y: 39.5,
+    cluster: 1
+  }, {
+    x: 34.9,
+    y: 43.6,
+    cluster: 1
+  }, {
+    x: 31.5,
+    y: 46.2,
+    cluster: 1
+  }, {
+    x: 29.3,
+    y: 49.5,
+    cluster: 1
+  }, {
+    x: 26.7,
+    y: 45.2,
+    cluster: 1
+  },
+  // Cluster 2
+  {
+    x: 21.6,
+    y: 53.1,
+    cluster: 2
+  }, {
+    x: 25.3,
+    y: 53.9,
+    cluster: 2
+  }, {
+    x: 25.8,
+    y: 57.9,
+    cluster: 2
+  }, {
+    x: 22.1,
+    y: 57.4,
+    cluster: 2
+  }, {
+    x: 18.4,
+    y: 56.0,
+    cluster: 2
+  }, {
+    x: 18.6,
+    y: 59.8,
+    cluster: 2
+  }, {
+    x: 22.5,
+    y: 61.7,
+    cluster: 2
+  }];
+  const radius = 1.8;
+  const opacity = 1.0; // uniform expression
+
+  // Compute viewBox dynamically
+  const xs = points.map(p => p.x);
+  const ys = points.map(p => p.y);
+  const minX = Math.min(...xs) - radius;
+  const minY = Math.min(...ys) - radius;
+  const maxX = Math.max(...xs) + radius;
+  const maxY = Math.max(...ys) + radius;
+  return /*#__PURE__*/(0, _jsxRuntime.jsx)("svg", _objectSpread(_objectSpread({
+    width: size,
+    height: size,
+    viewBox: "".concat(minX, " ").concat(minY, " ").concat(maxX - minX, " ").concat(maxY - minY),
+    xmlns: "http://www.w3.org/2000/svg"
+  }, props), {}, {
+    children: points.map((_ref2, i) => {
+      let {
+        x,
+        y
+      } = _ref2;
+      return /*#__PURE__*/(0, _jsxRuntime.jsx)("circle", {
+        cx: x,
+        cy: y,
+        r: radius,
+        fill: colour,
+        opacity: opacity
+      }, i);
+    })
+  }));
+}