@haniffalab/cherita-react 1.2.0-dev.2025-05-21.e8f5ce54 → 1.2.0-dev.2025-05-21.6154c7e3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/cjs/components/controls/Controls.js +60 -0
- package/dist/cjs/components/dotplot/Dotplot.js +29 -22
- package/dist/cjs/components/dotplot/DotplotControls.js +62 -99
- package/dist/cjs/components/full-page/FullPage.js +9 -7
- package/dist/cjs/components/full-page/FullPagePseudospatial.js +9 -7
- package/dist/cjs/components/heatmap/Heatmap.js +22 -13
- package/dist/cjs/components/heatmap/HeatmapControls.js +2 -19
- package/dist/cjs/components/matrixplot/Matrixplot.js +25 -16
- package/dist/cjs/components/matrixplot/MatrixplotControls.js +4 -34
- package/dist/cjs/components/obs-list/ObsItem.js +37 -29
- package/dist/cjs/components/obs-list/ObsList.js +47 -44
- package/dist/cjs/components/obsm-list/ObsmList.js +9 -6
- package/dist/cjs/components/offcanvas/index.js +13 -9
- package/dist/cjs/components/pseudospatial/Pseudospatial.js +61 -53
- package/dist/cjs/components/pseudospatial/PseudospatialToolbar.js +17 -11
- package/dist/cjs/components/scatterplot/Scatterplot.js +52 -52
- package/dist/cjs/components/scatterplot/ScatterplotControls.js +11 -24
- package/dist/cjs/components/scatterplot/SpatialControls.js +4 -4
- package/dist/cjs/components/search-bar/SearchBar.js +12 -10
- package/dist/cjs/components/search-bar/SearchInfo.js +14 -13
- package/dist/cjs/components/search-bar/SearchResults.js +16 -14
- package/dist/cjs/components/var-list/VarItem.js +10 -7
- package/dist/cjs/components/var-list/VarList.js +14 -9
- package/dist/cjs/components/var-list/VarListToolbar.js +1 -2
- package/dist/cjs/components/var-list/VarSet.js +1 -2
- package/dist/cjs/components/violin/Violin.js +48 -39
- package/dist/cjs/components/violin/ViolinControls.js +4 -20
- package/dist/cjs/context/DatasetContext.js +17 -11
- package/dist/cjs/context/FilterContext.js +9 -8
- package/dist/cjs/context/SettingsContext.js +172 -240
- package/dist/cjs/context/ZarrDataContext.js +1 -2
- package/dist/cjs/helpers/color-helper.js +3 -3
- package/dist/cjs/helpers/zarr-helper.js +15 -12
- package/dist/cjs/utils/Filter.js +13 -9
- package/dist/cjs/utils/Histogram.js +4 -3
- package/dist/cjs/utils/ImageViewer.js +1 -2
- package/dist/cjs/utils/Legend.js +3 -3
- package/dist/cjs/utils/LoadingIndicators.js +1 -1
- package/dist/cjs/utils/VirtualizedList.js +16 -13
- package/dist/cjs/utils/errors.js +20 -22
- package/dist/cjs/utils/requests.js +13 -10
- package/dist/cjs/utils/zarrData.js +12 -8
- package/dist/css/cherita.css +13 -9
- package/dist/css/cherita.css.map +1 -1
- package/dist/esm/components/controls/Controls.js +51 -0
- package/dist/esm/components/dotplot/Dotplot.js +28 -20
- package/dist/esm/components/dotplot/DotplotControls.js +62 -97
- package/dist/esm/components/full-page/FullPage.js +8 -5
- package/dist/esm/components/full-page/FullPagePseudospatial.js +8 -5
- package/dist/esm/components/heatmap/Heatmap.js +21 -11
- package/dist/esm/components/heatmap/HeatmapControls.js +3 -20
- package/dist/esm/components/matrixplot/Matrixplot.js +24 -14
- package/dist/esm/components/matrixplot/MatrixplotControls.js +5 -35
- package/dist/esm/components/obs-list/ObsItem.js +36 -27
- package/dist/esm/components/obs-list/ObsList.js +46 -42
- package/dist/esm/components/obsm-list/ObsmList.js +8 -4
- package/dist/esm/components/offcanvas/index.js +13 -9
- package/dist/esm/components/pseudospatial/Pseudospatial.js +60 -51
- package/dist/esm/components/pseudospatial/PseudospatialToolbar.js +16 -9
- package/dist/esm/components/scatterplot/Scatterplot.js +51 -50
- package/dist/esm/components/scatterplot/ScatterplotControls.js +11 -22
- package/dist/esm/components/scatterplot/SpatialControls.js +3 -2
- package/dist/esm/components/search-bar/SearchBar.js +11 -8
- package/dist/esm/components/search-bar/SearchInfo.js +13 -11
- package/dist/esm/components/search-bar/SearchResults.js +15 -12
- package/dist/esm/components/var-list/VarItem.js +9 -5
- package/dist/esm/components/var-list/VarList.js +13 -7
- package/dist/esm/components/violin/Violin.js +47 -37
- package/dist/esm/components/violin/ViolinControls.js +5 -21
- package/dist/esm/context/DatasetContext.js +16 -9
- package/dist/esm/context/FilterContext.js +8 -6
- package/dist/esm/context/SettingsContext.js +171 -238
- package/dist/esm/helpers/color-helper.js +3 -3
- package/dist/esm/helpers/zarr-helper.js +15 -12
- package/dist/esm/utils/Filter.js +13 -9
- package/dist/esm/utils/Histogram.js +4 -3
- package/dist/esm/utils/Legend.js +2 -1
- package/dist/esm/utils/LoadingIndicators.js +1 -1
- package/dist/esm/utils/VirtualizedList.js +15 -11
- package/dist/esm/utils/errors.js +20 -22
- package/dist/esm/utils/requests.js +13 -10
- package/dist/esm/utils/zarrData.js +12 -8
- package/package.json +4 -2
|
@@ -19,9 +19,9 @@ var _offcanvas = require("../offcanvas");
|
|
|
19
19
|
var _ScatterplotControls = require("./ScatterplotControls");
|
|
20
20
|
var _SettingsContext = require("../../context/SettingsContext");
|
|
21
21
|
function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
|
|
22
|
-
function
|
|
23
|
-
function _interopRequireWildcard(e, r) { if (!r && e && e.__esModule) return e; if (null === e || "object" != typeof e && "function" != typeof e) return { default: e }; var t = _getRequireWildcardCache(r); if (t && t.has(e)) return t.get(e); var n = { __proto__: null }, a = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var u in e) if ("default" !== u && {}.hasOwnProperty.call(e, u)) { var i = a ? Object.getOwnPropertyDescriptor(e, u) : null; i && (i.get || i.set) ? Object.defineProperty(n, u, i) : n[u] = e[u]; } return n.default = e, t && t.set(e, n), n; }
|
|
22
|
+
function _interopRequireWildcard(e, t) { if ("function" == typeof WeakMap) var r = new WeakMap(), n = new WeakMap(); return (_interopRequireWildcard = function (e, t) { if (!t && e && e.__esModule) return e; var o, i, f = { __proto__: null, default: e }; if (null === e || "object" != typeof e && "function" != typeof e) return f; if (o = t ? n : r) { if (o.has(e)) return o.get(e); o.set(e, f); } for (const t in e) "default" !== t && {}.hasOwnProperty.call(e, t) && ((i = (o = Object.defineProperty) && Object.getOwnPropertyDescriptor(e, t)) && (i.get || i.set) ? o(f, t, i) : f[t] = e[t]); return f; })(e, t); }
|
|
24
23
|
function SpatialControls(_ref) {
|
|
24
|
+
var _features$features;
|
|
25
25
|
let {
|
|
26
26
|
mode,
|
|
27
27
|
setMode,
|
|
@@ -149,7 +149,7 @@ function SpatialControls(_ref) {
|
|
|
149
149
|
onSelect: onSelect
|
|
150
150
|
}, /*#__PURE__*/_react.default.createElement(_Dropdown.default.Toggle, {
|
|
151
151
|
id: "dropdown-autoclose-outside",
|
|
152
|
-
className:
|
|
152
|
+
className: "caret-off ".concat(mode === _editModes.DrawPolygonByDraggingMode || mode === _editModes.ModifyMode ? "active" : "")
|
|
153
153
|
}, /*#__PURE__*/_react.default.createElement(_reactFontawesome.FontAwesomeIcon, {
|
|
154
154
|
icon: _freeSolidSvgIcons.faDrawPolygon
|
|
155
155
|
})), /*#__PURE__*/_react.default.createElement(_Dropdown.default.Menu, null, /*#__PURE__*/_react.default.createElement(_Dropdown.default.Header, null, "Polygon tools"), /*#__PURE__*/_react.default.createElement(_Dropdown.default.Item, {
|
|
@@ -167,7 +167,7 @@ function SpatialControls(_ref) {
|
|
|
167
167
|
}, /*#__PURE__*/_react.default.createElement(_reactFontawesome.FontAwesomeIcon, {
|
|
168
168
|
icon: _freeSolidSvgIcons.faTrash,
|
|
169
169
|
className: "nav-icon"
|
|
170
|
-
}), "Delete polygons"))), !!features
|
|
170
|
+
}), "Delete polygons"))), !!(features !== null && features !== void 0 && (_features$features = features.features) !== null && _features$features !== void 0 && _features$features.length) && polygonControls, /*#__PURE__*/_react.default.createElement(_Button.default, {
|
|
171
171
|
onClick: handleShowControls
|
|
172
172
|
}, /*#__PURE__*/_react.default.createElement(_reactFontawesome.FontAwesomeIcon, {
|
|
173
173
|
icon: _freeSolidSvgIcons.faSliders
|
|
@@ -18,8 +18,12 @@ var _SearchInfo = require("./SearchInfo");
|
|
|
18
18
|
var _SearchResults = require("./SearchResults");
|
|
19
19
|
var _constants = require("../../constants/constants");
|
|
20
20
|
function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
|
|
21
|
-
function
|
|
22
|
-
function
|
|
21
|
+
function _interopRequireWildcard(e, t) { if ("function" == typeof WeakMap) var r = new WeakMap(), n = new WeakMap(); return (_interopRequireWildcard = function (e, t) { if (!t && e && e.__esModule) return e; var o, i, f = { __proto__: null, default: e }; if (null === e || "object" != typeof e && "function" != typeof e) return f; if (o = t ? n : r) { if (o.has(e)) return o.get(e); o.set(e, f); } for (const t in e) "default" !== t && {}.hasOwnProperty.call(e, t) && ((i = (o = Object.defineProperty) && Object.getOwnPropertyDescriptor(e, t)) && (i.get || i.set) ? o(f, t, i) : f[t] = e[t]); return f; })(e, t); }
|
|
22
|
+
function ownKeys(e, r) { var t = Object.keys(e); if (Object.getOwnPropertySymbols) { var o = Object.getOwnPropertySymbols(e); r && (o = o.filter(function (r) { return Object.getOwnPropertyDescriptor(e, r).enumerable; })), t.push.apply(t, o); } return t; }
|
|
23
|
+
function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t = null != arguments[r] ? arguments[r] : {}; r % 2 ? ownKeys(Object(t), !0).forEach(function (r) { _defineProperty(e, r, t[r]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(e, Object.getOwnPropertyDescriptors(t)) : ownKeys(Object(t)).forEach(function (r) { Object.defineProperty(e, r, Object.getOwnPropertyDescriptor(t, r)); }); } return e; }
|
|
24
|
+
function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
|
|
25
|
+
function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == typeof i ? i : i + ""; }
|
|
26
|
+
function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
|
|
23
27
|
function onVarSelect(dispatch, item) {
|
|
24
28
|
dispatch({
|
|
25
29
|
type: "select.var",
|
|
@@ -121,9 +125,9 @@ function SearchModal(_ref2) {
|
|
|
121
125
|
className: "flex-column"
|
|
122
126
|
}, searchVar && /*#__PURE__*/_react.default.createElement(_Nav.default.Item, null, /*#__PURE__*/_react.default.createElement(_Nav.default.Link, {
|
|
123
127
|
eventKey: FEATURE_TYPE.VAR
|
|
124
|
-
}, "Genes", " ", !!varResultsLength &&
|
|
128
|
+
}, "Genes", " ", !!varResultsLength && "(".concat(varResultsLength, ")"))), searchDiseases && /*#__PURE__*/_react.default.createElement(_Nav.default.Item, null, /*#__PURE__*/_react.default.createElement(_Nav.default.Link, {
|
|
125
129
|
eventKey: FEATURE_TYPE.DISEASE
|
|
126
|
-
}, "Diseases", " ", !!diseaseResultsLength &&
|
|
130
|
+
}, "Diseases", " ", !!diseaseResultsLength && "(".concat(diseaseResultsLength, ")"))))), /*#__PURE__*/_react.default.createElement(_Col.default, {
|
|
127
131
|
sm: 9,
|
|
128
132
|
className: "py-3"
|
|
129
133
|
}, /*#__PURE__*/_react.default.createElement(_Tab.default.Content, null, searchVar && /*#__PURE__*/_react.default.createElement(_Tab.default.Pane, {
|
|
@@ -133,10 +137,9 @@ function SearchModal(_ref2) {
|
|
|
133
137
|
handleSelect: handleSelect,
|
|
134
138
|
selectedResult: selectedResult.var,
|
|
135
139
|
setSelectedResult: item => setSelectedResult(prev => {
|
|
136
|
-
return {
|
|
137
|
-
...prev,
|
|
140
|
+
return _objectSpread(_objectSpread({}, prev), {}, {
|
|
138
141
|
var: item
|
|
139
|
-
};
|
|
142
|
+
});
|
|
140
143
|
}),
|
|
141
144
|
setResultsLength: setVarResultsLength
|
|
142
145
|
})), searchDiseases && /*#__PURE__*/_react.default.createElement(_Tab.default.Pane, {
|
|
@@ -145,10 +148,9 @@ function SearchModal(_ref2) {
|
|
|
145
148
|
text: text,
|
|
146
149
|
selectedResult: selectedResult.disease,
|
|
147
150
|
setSelectedResult: item => setSelectedResult(prev => {
|
|
148
|
-
return {
|
|
149
|
-
...prev,
|
|
151
|
+
return _objectSpread(_objectSpread({}, prev), {}, {
|
|
150
152
|
disease: item
|
|
151
|
-
};
|
|
153
|
+
});
|
|
152
154
|
}),
|
|
153
155
|
setResultsLength: setDiseaseResultsLength
|
|
154
156
|
}))))))), /*#__PURE__*/_react.default.createElement(_Col.default, {
|
|
@@ -16,8 +16,12 @@ var _SettingsContext = require("../../context/SettingsContext");
|
|
|
16
16
|
var _requests = require("../../utils/requests");
|
|
17
17
|
var _VarItem = require("../var-list/VarItem");
|
|
18
18
|
function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
|
|
19
|
-
function
|
|
20
|
-
function
|
|
19
|
+
function _interopRequireWildcard(e, t) { if ("function" == typeof WeakMap) var r = new WeakMap(), n = new WeakMap(); return (_interopRequireWildcard = function (e, t) { if (!t && e && e.__esModule) return e; var o, i, f = { __proto__: null, default: e }; if (null === e || "object" != typeof e && "function" != typeof e) return f; if (o = t ? n : r) { if (o.has(e)) return o.get(e); o.set(e, f); } for (const t in e) "default" !== t && {}.hasOwnProperty.call(e, t) && ((i = (o = Object.defineProperty) && Object.getOwnPropertyDescriptor(e, t)) && (i.get || i.set) ? o(f, t, i) : f[t] = e[t]); return f; })(e, t); }
|
|
20
|
+
function ownKeys(e, r) { var t = Object.keys(e); if (Object.getOwnPropertySymbols) { var o = Object.getOwnPropertySymbols(e); r && (o = o.filter(function (r) { return Object.getOwnPropertyDescriptor(e, r).enumerable; })), t.push.apply(t, o); } return t; }
|
|
21
|
+
function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t = null != arguments[r] ? arguments[r] : {}; r % 2 ? ownKeys(Object(t), !0).forEach(function (r) { _defineProperty(e, r, t[r]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(e, Object.getOwnPropertyDescriptors(t)) : ownKeys(Object(t)).forEach(function (r) { Object.defineProperty(e, r, Object.getOwnPropertyDescriptor(t, r)); }); } return e; }
|
|
22
|
+
function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
|
|
23
|
+
function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == typeof i ? i : i + ""; }
|
|
24
|
+
function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
|
|
21
25
|
function VarInfo(_ref) {
|
|
22
26
|
let {
|
|
23
27
|
varItem
|
|
@@ -30,10 +34,9 @@ function VarInfo(_ref) {
|
|
|
30
34
|
});
|
|
31
35
|
(0, _react.useEffect)(() => {
|
|
32
36
|
setParams(p => {
|
|
33
|
-
return {
|
|
34
|
-
...p,
|
|
37
|
+
return _objectSpread(_objectSpread({}, p), {}, {
|
|
35
38
|
geneName: varItem.name
|
|
36
|
-
};
|
|
39
|
+
});
|
|
37
40
|
});
|
|
38
41
|
}, [varItem.name]);
|
|
39
42
|
const {
|
|
@@ -44,7 +47,7 @@ function VarInfo(_ref) {
|
|
|
44
47
|
refetchOnMount: false,
|
|
45
48
|
enabled: !!dataset.diseaseDatasets.length
|
|
46
49
|
});
|
|
47
|
-
const hasDiseaseInfo = !isPending && !serverError && !!fetchedData
|
|
50
|
+
const hasDiseaseInfo = !isPending && !serverError && !!(fetchedData !== null && fetchedData !== void 0 && fetchedData.length);
|
|
48
51
|
return /*#__PURE__*/_react.default.createElement("div", null, /*#__PURE__*/_react.default.createElement("h5", null, varItem.name), !!dataset.diseaseDatasets.length && isPending && /*#__PURE__*/_react.default.createElement("p", null, "Loading..."), hasDiseaseInfo && /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, /*#__PURE__*/_react.default.createElement("h6", null, "Associated diseases"), /*#__PURE__*/_react.default.createElement(_VarItem.VarDiseaseInfo, {
|
|
49
52
|
data: fetchedData
|
|
50
53
|
})));
|
|
@@ -64,13 +67,12 @@ const useVarMean = function (varKeys) {
|
|
|
64
67
|
});
|
|
65
68
|
(0, _react.useEffect)(() => {
|
|
66
69
|
setParams(p => {
|
|
67
|
-
return {
|
|
68
|
-
...p,
|
|
70
|
+
return _objectSpread(_objectSpread({}, p), {}, {
|
|
69
71
|
varKeys: _lodash.default.map(varKeys, v => v.isSet ? {
|
|
70
72
|
name: v.name,
|
|
71
73
|
indices: v.vars.map(v => v.index)
|
|
72
74
|
} : v.index)
|
|
73
|
-
};
|
|
75
|
+
});
|
|
74
76
|
});
|
|
75
77
|
}, [varKeys]);
|
|
76
78
|
return (0, _requests.useFetch)(ENDPOINT, params, {
|
|
@@ -103,10 +105,9 @@ function DiseaseInfo(_ref2) {
|
|
|
103
105
|
});
|
|
104
106
|
(0, _react.useEffect)(() => {
|
|
105
107
|
setParams(p => {
|
|
106
|
-
return {
|
|
107
|
-
...p,
|
|
108
|
+
return _objectSpread(_objectSpread({}, p), {}, {
|
|
108
109
|
diseaseId: disease.id
|
|
109
|
-
};
|
|
110
|
+
});
|
|
110
111
|
});
|
|
111
112
|
}, [disease]);
|
|
112
113
|
const diseaseData = (0, _requests.useFetch)(ENDPOINT, params, {
|
|
@@ -118,7 +119,7 @@ function DiseaseInfo(_ref2) {
|
|
|
118
119
|
setDiseaseVars(diseaseData.fetchedData);
|
|
119
120
|
}
|
|
120
121
|
}, [diseaseData.fetchedData, diseaseData.isPending, diseaseData.serverError]);
|
|
121
|
-
const varMeans = useVarMean(diseaseVars, !!diseaseVars
|
|
122
|
+
const varMeans = useVarMean(diseaseVars, !!(diseaseVars !== null && diseaseVars !== void 0 && diseaseVars.length) && settings.varSort.disease.sort === _constants.VAR_SORT.MATRIX);
|
|
122
123
|
(0, _react.useEffect)(() => {
|
|
123
124
|
if (settings.varSort.disease.sort === _constants.VAR_SORT.MATRIX) {
|
|
124
125
|
if (!varMeans.isPending && !varMeans.serverError) {
|
|
@@ -14,8 +14,12 @@ var _SettingsContext = require("../../context/SettingsContext");
|
|
|
14
14
|
var _search = require("../../utils/search");
|
|
15
15
|
var _VirtualizedList = require("../../utils/VirtualizedList");
|
|
16
16
|
function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
|
|
17
|
-
function
|
|
18
|
-
function
|
|
17
|
+
function _interopRequireWildcard(e, t) { if ("function" == typeof WeakMap) var r = new WeakMap(), n = new WeakMap(); return (_interopRequireWildcard = function (e, t) { if (!t && e && e.__esModule) return e; var o, i, f = { __proto__: null, default: e }; if (null === e || "object" != typeof e && "function" != typeof e) return f; if (o = t ? n : r) { if (o.has(e)) return o.get(e); o.set(e, f); } for (const t in e) "default" !== t && {}.hasOwnProperty.call(e, t) && ((i = (o = Object.defineProperty) && Object.getOwnPropertyDescriptor(e, t)) && (i.get || i.set) ? o(f, t, i) : f[t] = e[t]); return f; })(e, t); }
|
|
18
|
+
function ownKeys(e, r) { var t = Object.keys(e); if (Object.getOwnPropertySymbols) { var o = Object.getOwnPropertySymbols(e); r && (o = o.filter(function (r) { return Object.getOwnPropertyDescriptor(e, r).enumerable; })), t.push.apply(t, o); } return t; }
|
|
19
|
+
function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t = null != arguments[r] ? arguments[r] : {}; r % 2 ? ownKeys(Object(t), !0).forEach(function (r) { _defineProperty(e, r, t[r]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(e, Object.getOwnPropertyDescriptors(t)) : ownKeys(Object(t)).forEach(function (r) { Object.defineProperty(e, r, Object.getOwnPropertyDescriptor(t, r)); }); } return e; }
|
|
20
|
+
function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
|
|
21
|
+
function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == typeof i ? i : i + ""; }
|
|
22
|
+
function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
|
|
19
23
|
function VarSearchResults(_ref) {
|
|
20
24
|
let {
|
|
21
25
|
text,
|
|
@@ -40,10 +44,9 @@ function VarSearchResults(_ref) {
|
|
|
40
44
|
const setData = text => {
|
|
41
45
|
if (text.length) {
|
|
42
46
|
setParams(p => {
|
|
43
|
-
return {
|
|
44
|
-
...p,
|
|
47
|
+
return _objectSpread(_objectSpread({}, p), {}, {
|
|
45
48
|
text: text
|
|
46
|
-
};
|
|
49
|
+
});
|
|
47
50
|
});
|
|
48
51
|
} else {
|
|
49
52
|
setSuggestions([]);
|
|
@@ -57,7 +60,7 @@ function VarSearchResults(_ref) {
|
|
|
57
60
|
(0, _react.useEffect)(() => {
|
|
58
61
|
if (!isPending && !serverError) {
|
|
59
62
|
setSuggestions(fetchedData);
|
|
60
|
-
setResultsLength(fetchedData
|
|
63
|
+
setResultsLength(fetchedData === null || fetchedData === void 0 ? void 0 : fetchedData.length);
|
|
61
64
|
}
|
|
62
65
|
}, [fetchedData, isPending, serverError, setResultsLength]);
|
|
63
66
|
const getDataAtIndex = index => deferredData[index];
|
|
@@ -68,7 +71,7 @@ function VarSearchResults(_ref) {
|
|
|
68
71
|
onClick: () => {
|
|
69
72
|
setSelectedResult(item);
|
|
70
73
|
},
|
|
71
|
-
active: selectedResult
|
|
74
|
+
active: (selectedResult === null || selectedResult === void 0 ? void 0 : selectedResult.index) === item.index
|
|
72
75
|
}, /*#__PURE__*/_react.default.createElement("div", {
|
|
73
76
|
className: "d-flex justify-content-between align-items-center w-100"
|
|
74
77
|
}, /*#__PURE__*/_react.default.createElement("div", null, item.name), /*#__PURE__*/_react.default.createElement("div", {
|
|
@@ -90,7 +93,7 @@ function VarSearchResults(_ref) {
|
|
|
90
93
|
}, /*#__PURE__*/_react.default.createElement(_reactBootstrap.ListGroup, {
|
|
91
94
|
variant: "flush",
|
|
92
95
|
className: "cherita-list"
|
|
93
|
-
}, deferredData
|
|
96
|
+
}, deferredData !== null && deferredData !== void 0 && deferredData.length ? /*#__PURE__*/_react.default.createElement(_VirtualizedList.VirtualizedList, {
|
|
94
97
|
getDataAtIndex: getDataAtIndex,
|
|
95
98
|
count: deferredData.length,
|
|
96
99
|
ItemComponent: ItemComponent,
|
|
@@ -125,10 +128,9 @@ function DiseasesSearchResults(_ref2) {
|
|
|
125
128
|
const setData = text => {
|
|
126
129
|
if (text.length) {
|
|
127
130
|
setParams(p => {
|
|
128
|
-
return {
|
|
129
|
-
...p,
|
|
131
|
+
return _objectSpread(_objectSpread({}, p), {}, {
|
|
130
132
|
text: text
|
|
131
|
-
};
|
|
133
|
+
});
|
|
132
134
|
});
|
|
133
135
|
} else {
|
|
134
136
|
setSuggestions([]);
|
|
@@ -142,7 +144,7 @@ function DiseasesSearchResults(_ref2) {
|
|
|
142
144
|
(0, _react.useEffect)(() => {
|
|
143
145
|
if (!isPending && !serverError) {
|
|
144
146
|
setSuggestions(fetchedData);
|
|
145
|
-
setResultsLength(fetchedData
|
|
147
|
+
setResultsLength(fetchedData === null || fetchedData === void 0 ? void 0 : fetchedData.length);
|
|
146
148
|
}
|
|
147
149
|
}, [fetchedData, isPending, serverError, setResultsLength]);
|
|
148
150
|
const getDataAtIndex = index => deferredData[index];
|
|
@@ -153,7 +155,7 @@ function DiseasesSearchResults(_ref2) {
|
|
|
153
155
|
onClick: () => {
|
|
154
156
|
setSelectedResult(item);
|
|
155
157
|
},
|
|
156
|
-
active: selectedResult
|
|
158
|
+
active: (selectedResult === null || selectedResult === void 0 ? void 0 : selectedResult.id) === item.id
|
|
157
159
|
}, /*#__PURE__*/_react.default.createElement("div", {
|
|
158
160
|
className: "d-flex justify-content-between align-items-center w-100"
|
|
159
161
|
}, /*#__PURE__*/_react.default.createElement("div", null, item.disease_name)))));
|
|
@@ -162,7 +164,7 @@ function DiseasesSearchResults(_ref2) {
|
|
|
162
164
|
}, /*#__PURE__*/_react.default.createElement(_reactBootstrap.ListGroup, {
|
|
163
165
|
variant: "flush",
|
|
164
166
|
className: "cherita-list"
|
|
165
|
-
}, deferredData
|
|
167
|
+
}, deferredData !== null && deferredData !== void 0 && deferredData.length ? /*#__PURE__*/_react.default.createElement(_VirtualizedList.VirtualizedList, {
|
|
166
168
|
getDataAtIndex: getDataAtIndex,
|
|
167
169
|
count: deferredData.length,
|
|
168
170
|
ItemComponent: ItemComponent,
|
|
@@ -19,9 +19,13 @@ var _SettingsContext = require("../../context/SettingsContext");
|
|
|
19
19
|
var _Histogram = require("../../utils/Histogram");
|
|
20
20
|
var _requests = require("../../utils/requests");
|
|
21
21
|
function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
|
|
22
|
-
function
|
|
23
|
-
function _interopRequireWildcard(e, r) { if (!r && e && e.__esModule) return e; if (null === e || "object" != typeof e && "function" != typeof e) return { default: e }; var t = _getRequireWildcardCache(r); if (t && t.has(e)) return t.get(e); var n = { __proto__: null }, a = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var u in e) if ("default" !== u && {}.hasOwnProperty.call(e, u)) { var i = a ? Object.getOwnPropertyDescriptor(e, u) : null; i && (i.get || i.set) ? Object.defineProperty(n, u, i) : n[u] = e[u]; } return n.default = e, t && t.set(e, n), n; }
|
|
22
|
+
function _interopRequireWildcard(e, t) { if ("function" == typeof WeakMap) var r = new WeakMap(), n = new WeakMap(); return (_interopRequireWildcard = function (e, t) { if (!t && e && e.__esModule) return e; var o, i, f = { __proto__: null, default: e }; if (null === e || "object" != typeof e && "function" != typeof e) return f; if (o = t ? n : r) { if (o.has(e)) return o.get(e); o.set(e, f); } for (const t in e) "default" !== t && {}.hasOwnProperty.call(e, t) && ((i = (o = Object.defineProperty) && Object.getOwnPropertyDescriptor(e, t)) && (i.get || i.set) ? o(f, t, i) : f[t] = e[t]); return f; })(e, t); }
|
|
24
23
|
function _extends() { return _extends = Object.assign ? Object.assign.bind() : function (n) { for (var e = 1; e < arguments.length; e++) { var t = arguments[e]; for (var r in t) ({}).hasOwnProperty.call(t, r) && (n[r] = t[r]); } return n; }, _extends.apply(null, arguments); }
|
|
24
|
+
function ownKeys(e, r) { var t = Object.keys(e); if (Object.getOwnPropertySymbols) { var o = Object.getOwnPropertySymbols(e); r && (o = o.filter(function (r) { return Object.getOwnPropertyDescriptor(e, r).enumerable; })), t.push.apply(t, o); } return t; }
|
|
25
|
+
function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t = null != arguments[r] ? arguments[r] : {}; r % 2 ? ownKeys(Object(t), !0).forEach(function (r) { _defineProperty(e, r, t[r]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(e, Object.getOwnPropertyDescriptors(t)) : ownKeys(Object(t)).forEach(function (r) { Object.defineProperty(e, r, Object.getOwnPropertyDescriptor(t, r)); }); } return e; }
|
|
26
|
+
function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
|
|
27
|
+
function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == typeof i ? i : i + ""; }
|
|
28
|
+
function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
|
|
25
29
|
function VarHistogram(_ref) {
|
|
26
30
|
let {
|
|
27
31
|
item
|
|
@@ -42,10 +46,9 @@ function VarHistogram(_ref) {
|
|
|
42
46
|
});
|
|
43
47
|
(0, _react.useEffect)(() => {
|
|
44
48
|
setParams(p => {
|
|
45
|
-
return {
|
|
46
|
-
...p,
|
|
49
|
+
return _objectSpread(_objectSpread({}, p), {}, {
|
|
47
50
|
obsIndices: isSliced ? [...(obsIndices || [])] : null
|
|
48
|
-
};
|
|
51
|
+
});
|
|
49
52
|
});
|
|
50
53
|
}, [obsIndices, isSliced]);
|
|
51
54
|
const {
|
|
@@ -118,9 +121,9 @@ function SelectionItem(_ref3) {
|
|
|
118
121
|
refetchOnMount: false,
|
|
119
122
|
enabled: !!dataset.diseaseDatasets.length
|
|
120
123
|
});
|
|
121
|
-
const hasDiseaseInfo = !isPending && !serverError && !!fetchedData
|
|
124
|
+
const hasDiseaseInfo = !isPending && !serverError && !!(fetchedData !== null && fetchedData !== void 0 && fetchedData.length);
|
|
122
125
|
return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, /*#__PURE__*/_react.default.createElement("div", {
|
|
123
|
-
className:
|
|
126
|
+
className: "d-flex justify-content-between ".concat(hasDiseaseInfo ? "cursor-pointer" : ""),
|
|
124
127
|
onClick: () => {
|
|
125
128
|
setOpenInfo(o => !o);
|
|
126
129
|
}
|
|
@@ -19,8 +19,12 @@ var _SettingsContext = require("../../context/SettingsContext");
|
|
|
19
19
|
var _LoadingIndicators = require("../../utils/LoadingIndicators");
|
|
20
20
|
var _requests = require("../../utils/requests");
|
|
21
21
|
function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
|
|
22
|
-
function
|
|
23
|
-
function
|
|
22
|
+
function _interopRequireWildcard(e, t) { if ("function" == typeof WeakMap) var r = new WeakMap(), n = new WeakMap(); return (_interopRequireWildcard = function (e, t) { if (!t && e && e.__esModule) return e; var o, i, f = { __proto__: null, default: e }; if (null === e || "object" != typeof e && "function" != typeof e) return f; if (o = t ? n : r) { if (o.has(e)) return o.get(e); o.set(e, f); } for (const t in e) "default" !== t && {}.hasOwnProperty.call(e, t) && ((i = (o = Object.defineProperty) && Object.getOwnPropertyDescriptor(e, t)) && (i.get || i.set) ? o(f, t, i) : f[t] = e[t]); return f; })(e, t); }
|
|
23
|
+
function ownKeys(e, r) { var t = Object.keys(e); if (Object.getOwnPropertySymbols) { var o = Object.getOwnPropertySymbols(e); r && (o = o.filter(function (r) { return Object.getOwnPropertyDescriptor(e, r).enumerable; })), t.push.apply(t, o); } return t; }
|
|
24
|
+
function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t = null != arguments[r] ? arguments[r] : {}; r % 2 ? ownKeys(Object(t), !0).forEach(function (r) { _defineProperty(e, r, t[r]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(e, Object.getOwnPropertyDescriptors(t)) : ownKeys(Object(t)).forEach(function (r) { Object.defineProperty(e, r, Object.getOwnPropertyDescriptor(t, r)); }); } return e; }
|
|
25
|
+
function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
|
|
26
|
+
function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == typeof i ? i : i + ""; }
|
|
27
|
+
function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
|
|
24
28
|
const useVarMean = function (varKeys) {
|
|
25
29
|
let enabled = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : false;
|
|
26
30
|
const ENDPOINT = "matrix/mean";
|
|
@@ -36,13 +40,12 @@ const useVarMean = function (varKeys) {
|
|
|
36
40
|
});
|
|
37
41
|
(0, _react.useEffect)(() => {
|
|
38
42
|
setParams(p => {
|
|
39
|
-
return {
|
|
40
|
-
...p,
|
|
43
|
+
return _objectSpread(_objectSpread({}, p), {}, {
|
|
41
44
|
varKeys: _lodash.default.map(varKeys, v => v.isSet ? {
|
|
42
45
|
name: v.name,
|
|
43
46
|
indices: v.vars.map(v => v.index)
|
|
44
47
|
} : v.index)
|
|
45
|
-
};
|
|
48
|
+
});
|
|
46
49
|
});
|
|
47
50
|
}, [varKeys]);
|
|
48
51
|
return (0, _requests.useFetch)(ENDPOINT, params, {
|
|
@@ -56,17 +59,19 @@ const sortMeans = (i, means) => {
|
|
|
56
59
|
return means[i.name] || _lodash.default.min(_lodash.default.values(means)) - 1;
|
|
57
60
|
};
|
|
58
61
|
function VarNamesList(_ref) {
|
|
62
|
+
var _settings$selectedVar, _settings$selectedVar2;
|
|
59
63
|
let {
|
|
60
64
|
mode = _constants.SELECTION_MODES.SINGLE,
|
|
61
65
|
displayName = "genes"
|
|
62
66
|
} = _ref;
|
|
63
67
|
const settings = (0, _SettingsContext.useSettings)();
|
|
64
68
|
const dispatch = (0, _SettingsContext.useSettingsDispatch)();
|
|
65
|
-
const [active, setActive] = (0, _react.useState)(mode === _constants.SELECTION_MODES.SINGLE ? settings.selectedVar
|
|
69
|
+
const [active, setActive] = (0, _react.useState)(mode === _constants.SELECTION_MODES.SINGLE ? ((_settings$selectedVar = settings.selectedVar) === null || _settings$selectedVar === void 0 ? void 0 : _settings$selectedVar.matrix_index) || ((_settings$selectedVar2 = settings.selectedVar) === null || _settings$selectedVar2 === void 0 ? void 0 : _settings$selectedVar2.name) : settings.selectedMultiVar.map(i => i.matrix_index || i.name));
|
|
66
70
|
const [sortedVars, setSortedVars] = (0, _react.useState)([]);
|
|
67
71
|
(0, _react.useEffect)(() => {
|
|
68
72
|
if (mode === _constants.SELECTION_MODES.SINGLE) {
|
|
69
|
-
|
|
73
|
+
var _settings$selectedVar3, _settings$selectedVar4;
|
|
74
|
+
setActive(((_settings$selectedVar3 = settings.selectedVar) === null || _settings$selectedVar3 === void 0 ? void 0 : _settings$selectedVar3.matrix_index) || ((_settings$selectedVar4 = settings.selectedVar) === null || _settings$selectedVar4 === void 0 ? void 0 : _settings$selectedVar4.name));
|
|
70
75
|
}
|
|
71
76
|
}, [mode, settings.selectedVar]);
|
|
72
77
|
(0, _react.useEffect)(() => {
|
|
@@ -117,13 +122,13 @@ function VarNamesList(_ref) {
|
|
|
117
122
|
});
|
|
118
123
|
const newSetName = () => {
|
|
119
124
|
let n = 1;
|
|
120
|
-
let setName =
|
|
125
|
+
let setName = "Set ".concat(n);
|
|
121
126
|
const nameExists = name => {
|
|
122
127
|
return settings.vars.some(v => v.name === name);
|
|
123
128
|
};
|
|
124
129
|
while (nameExists(setName)) {
|
|
125
130
|
n++;
|
|
126
|
-
setName =
|
|
131
|
+
setName = "Set ".concat(n);
|
|
127
132
|
}
|
|
128
133
|
return setName;
|
|
129
134
|
};
|
|
@@ -10,8 +10,7 @@ var _reactFontawesome = require("@fortawesome/react-fontawesome");
|
|
|
10
10
|
var _reactBootstrap = require("react-bootstrap");
|
|
11
11
|
var _constants = require("../../constants/constants");
|
|
12
12
|
var _SettingsContext = require("../../context/SettingsContext");
|
|
13
|
-
function
|
|
14
|
-
function _interopRequireWildcard(e, r) { if (!r && e && e.__esModule) return e; if (null === e || "object" != typeof e && "function" != typeof e) return { default: e }; var t = _getRequireWildcardCache(r); if (t && t.has(e)) return t.get(e); var n = { __proto__: null }, a = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var u in e) if ("default" !== u && {}.hasOwnProperty.call(e, u)) { var i = a ? Object.getOwnPropertyDescriptor(e, u) : null; i && (i.get || i.set) ? Object.defineProperty(n, u, i) : n[u] = e[u]; } return n.default = e, t && t.set(e, n), n; }
|
|
13
|
+
function _interopRequireWildcard(e, t) { if ("function" == typeof WeakMap) var r = new WeakMap(), n = new WeakMap(); return (_interopRequireWildcard = function (e, t) { if (!t && e && e.__esModule) return e; var o, i, f = { __proto__: null, default: e }; if (null === e || "object" != typeof e && "function" != typeof e) return f; if (o = t ? n : r) { if (o.has(e)) return o.get(e); o.set(e, f); } for (const t in e) "default" !== t && {}.hasOwnProperty.call(e, t) && ((i = (o = Object.defineProperty) && Object.getOwnPropertyDescriptor(e, t)) && (i.get || i.set) ? o(f, t, i) : f[t] = e[t]); return f; })(e, t); }
|
|
15
14
|
// @TODO: set option for "var" and "disease"
|
|
16
15
|
function VarListToolbar(_ref) {
|
|
17
16
|
let {
|
|
@@ -14,8 +14,7 @@ var _constants = require("../../constants/constants");
|
|
|
14
14
|
var _SettingsContext = require("../../context/SettingsContext");
|
|
15
15
|
var _SearchBar = require("../search-bar/SearchBar");
|
|
16
16
|
function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
|
|
17
|
-
function
|
|
18
|
-
function _interopRequireWildcard(e, r) { if (!r && e && e.__esModule) return e; if (null === e || "object" != typeof e && "function" != typeof e) return { default: e }; var t = _getRequireWildcardCache(r); if (t && t.has(e)) return t.get(e); var n = { __proto__: null }, a = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var u in e) if ("default" !== u && {}.hasOwnProperty.call(e, u)) { var i = a ? Object.getOwnPropertyDescriptor(e, u) : null; i && (i.get || i.set) ? Object.defineProperty(n, u, i) : n[u] = e[u]; } return n.default = e, t && t.set(e, n), n; }
|
|
17
|
+
function _interopRequireWildcard(e, t) { if ("function" == typeof WeakMap) var r = new WeakMap(), n = new WeakMap(); return (_interopRequireWildcard = function (e, t) { if (!t && e && e.__esModule) return e; var o, i, f = { __proto__: null, default: e }; if (null === e || "object" != typeof e && "function" != typeof e) return f; if (o = t ? n : r) { if (o.has(e)) return o.get(e); o.set(e, f); } for (const t in e) "default" !== t && {}.hasOwnProperty.call(e, t) && ((i = (o = Object.defineProperty) && Object.getOwnPropertyDescriptor(e, t)) && (i.get || i.set) ? o(f, t, i) : f[t] = e[t]); return f; })(e, t); }
|
|
19
18
|
// @TODO: add button to score genes and plot
|
|
20
19
|
|
|
21
20
|
const addVarToSet = (dispatch, set, v) => {
|
|
@@ -17,9 +17,14 @@ var _SettingsContext = require("../../context/SettingsContext");
|
|
|
17
17
|
var _LoadingIndicators = require("../../utils/LoadingIndicators");
|
|
18
18
|
var _requests = require("../../utils/requests");
|
|
19
19
|
function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
|
|
20
|
-
function
|
|
21
|
-
function
|
|
20
|
+
function _interopRequireWildcard(e, t) { if ("function" == typeof WeakMap) var r = new WeakMap(), n = new WeakMap(); return (_interopRequireWildcard = function (e, t) { if (!t && e && e.__esModule) return e; var o, i, f = { __proto__: null, default: e }; if (null === e || "object" != typeof e && "function" != typeof e) return f; if (o = t ? n : r) { if (o.has(e)) return o.get(e); o.set(e, f); } for (const t in e) "default" !== t && {}.hasOwnProperty.call(e, t) && ((i = (o = Object.defineProperty) && Object.getOwnPropertyDescriptor(e, t)) && (i.get || i.set) ? o(f, t, i) : f[t] = e[t]); return f; })(e, t); }
|
|
21
|
+
function ownKeys(e, r) { var t = Object.keys(e); if (Object.getOwnPropertySymbols) { var o = Object.getOwnPropertySymbols(e); r && (o = o.filter(function (r) { return Object.getOwnPropertyDescriptor(e, r).enumerable; })), t.push.apply(t, o); } return t; }
|
|
22
|
+
function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t = null != arguments[r] ? arguments[r] : {}; r % 2 ? ownKeys(Object(t), !0).forEach(function (r) { _defineProperty(e, r, t[r]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(e, Object.getOwnPropertyDescriptors(t)) : ownKeys(Object(t)).forEach(function (r) { Object.defineProperty(e, r, Object.getOwnPropertyDescriptor(t, r)); }); } return e; }
|
|
23
|
+
function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
|
|
24
|
+
function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == typeof i ? i : i + ""; }
|
|
25
|
+
function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
|
|
22
26
|
function Violin(_ref) {
|
|
27
|
+
var _settings$selectedVar, _settings$selectedVar2, _settings$selectedVar3, _settings$selectedVar4, _settings$selectedObs, _settings$selectedObs2, _settings$selectedObs3;
|
|
23
28
|
let {
|
|
24
29
|
mode = _constants.VIOLIN_MODES.MULTIKEY
|
|
25
30
|
} = _ref;
|
|
@@ -33,30 +38,32 @@ function Violin(_ref) {
|
|
|
33
38
|
const [data, setData] = (0, _react.useState)([]);
|
|
34
39
|
const [layout, setLayout] = (0, _react.useState)({});
|
|
35
40
|
const [hasSelections, setHasSelections] = (0, _react.useState)(false);
|
|
36
|
-
const [params, setParams] = (0, _react.useState)({
|
|
41
|
+
const [params, setParams] = (0, _react.useState)(_objectSpread({
|
|
37
42
|
url: dataset.url,
|
|
38
43
|
mode: mode,
|
|
39
|
-
scale: settings.controls.scale.violinplot
|
|
40
|
-
varNamesCol: dataset.varNamesCol
|
|
41
|
-
|
|
42
|
-
|
|
43
|
-
|
|
44
|
-
|
|
45
|
-
|
|
46
|
-
|
|
47
|
-
|
|
48
|
-
|
|
49
|
-
|
|
50
|
-
|
|
51
|
-
|
|
52
|
-
|
|
53
|
-
|
|
54
|
-
|
|
55
|
-
|
|
56
|
-
|
|
57
|
-
|
|
58
|
-
|
|
59
|
-
|
|
44
|
+
scale: settings.controls.scale.violinplot,
|
|
45
|
+
varNamesCol: dataset.varNamesCol
|
|
46
|
+
}, {
|
|
47
|
+
[_constants.VIOLIN_MODES.MULTIKEY]: {
|
|
48
|
+
varKeys: settings.selectedMultiVar.map(i => i.isSet ? {
|
|
49
|
+
name: i.name,
|
|
50
|
+
indices: i.vars.map(v => v.index)
|
|
51
|
+
} : i.index),
|
|
52
|
+
obsKeys: [] // @TODO: implement
|
|
53
|
+
},
|
|
54
|
+
[_constants.VIOLIN_MODES.GROUPBY]: {
|
|
55
|
+
varKey: (_settings$selectedVar = settings.selectedVar) !== null && _settings$selectedVar !== void 0 && _settings$selectedVar.isSet ? {
|
|
56
|
+
name: (_settings$selectedVar2 = settings.selectedVar) === null || _settings$selectedVar2 === void 0 ? void 0 : _settings$selectedVar2.name,
|
|
57
|
+
indices: (_settings$selectedVar3 = settings.selectedVar) === null || _settings$selectedVar3 === void 0 ? void 0 : _settings$selectedVar3.vars.map(v => v.index)
|
|
58
|
+
} : (_settings$selectedVar4 = settings.selectedVar) === null || _settings$selectedVar4 === void 0 ? void 0 : _settings$selectedVar4.index,
|
|
59
|
+
obsCol: settings.selectedObs,
|
|
60
|
+
obsValues: !((_settings$selectedObs = settings.selectedObs) !== null && _settings$selectedObs !== void 0 && _settings$selectedObs.omit.length) ? null : _lodash.default.difference(_lodash.default.values((_settings$selectedObs2 = settings.selectedObs) === null || _settings$selectedObs2 === void 0 ? void 0 : _settings$selectedObs2.codes), (_settings$selectedObs3 = settings.selectedObs) === null || _settings$selectedObs3 === void 0 ? void 0 : _settings$selectedObs3.omit).map(c => {
|
|
61
|
+
var _settings$selectedObs4;
|
|
62
|
+
return (_settings$selectedObs4 = settings.selectedObs) === null || _settings$selectedObs4 === void 0 ? void 0 : _settings$selectedObs4.codesMap[c];
|
|
63
|
+
}),
|
|
64
|
+
obsIndices: isSliced ? [...(obsIndices || [])] : null
|
|
65
|
+
}
|
|
66
|
+
}[mode]));
|
|
60
67
|
// @TODO: set default scale
|
|
61
68
|
|
|
62
69
|
(0, _react.useEffect)(() => {
|
|
@@ -67,17 +74,16 @@ function Violin(_ref) {
|
|
|
67
74
|
setHasSelections(false);
|
|
68
75
|
}
|
|
69
76
|
setParams(p => {
|
|
70
|
-
return {
|
|
71
|
-
...p,
|
|
77
|
+
return _objectSpread(_objectSpread({}, p), {}, {
|
|
72
78
|
url: dataset.url,
|
|
73
79
|
mode: mode,
|
|
74
80
|
varKeys: settings.selectedMultiVar.map(i => i.isSet ? {
|
|
75
81
|
name: i.name,
|
|
76
82
|
indices: i.vars.map(v => v.index)
|
|
77
83
|
} : i.index),
|
|
78
|
-
scale: settings.controls.scale.violinplot
|
|
84
|
+
scale: settings.controls.scale.violinplot,
|
|
79
85
|
varNamesCol: dataset.varNamesCol
|
|
80
|
-
};
|
|
86
|
+
});
|
|
81
87
|
});
|
|
82
88
|
} else if (mode === _constants.VIOLIN_MODES.GROUPBY) {
|
|
83
89
|
if (settings.selectedObs && settings.selectedVar) {
|
|
@@ -86,23 +92,26 @@ function Violin(_ref) {
|
|
|
86
92
|
setHasSelections(false);
|
|
87
93
|
}
|
|
88
94
|
setParams(p => {
|
|
89
|
-
|
|
90
|
-
|
|
95
|
+
var _settings$selectedVar5, _settings$selectedVar6, _settings$selectedVar7, _settings$selectedVar8, _settings$selectedObs5, _settings$selectedObs6, _settings$selectedObs7;
|
|
96
|
+
return _objectSpread(_objectSpread({}, p), {}, {
|
|
91
97
|
url: dataset.url,
|
|
92
98
|
mode: mode,
|
|
93
|
-
varKey: settings.selectedVar
|
|
94
|
-
name: settings.selectedVar
|
|
95
|
-
indices: settings.selectedVar
|
|
96
|
-
} : settings.selectedVar
|
|
99
|
+
varKey: (_settings$selectedVar5 = settings.selectedVar) !== null && _settings$selectedVar5 !== void 0 && _settings$selectedVar5.isSet ? {
|
|
100
|
+
name: (_settings$selectedVar6 = settings.selectedVar) === null || _settings$selectedVar6 === void 0 ? void 0 : _settings$selectedVar6.name,
|
|
101
|
+
indices: (_settings$selectedVar7 = settings.selectedVar) === null || _settings$selectedVar7 === void 0 ? void 0 : _settings$selectedVar7.vars.map(v => v.index)
|
|
102
|
+
} : (_settings$selectedVar8 = settings.selectedVar) === null || _settings$selectedVar8 === void 0 ? void 0 : _settings$selectedVar8.index,
|
|
97
103
|
obsCol: settings.selectedObs,
|
|
98
|
-
obsValues: !settings.selectedObs
|
|
104
|
+
obsValues: !((_settings$selectedObs5 = settings.selectedObs) !== null && _settings$selectedObs5 !== void 0 && _settings$selectedObs5.omit.length) ? null : _lodash.default.difference(_lodash.default.values((_settings$selectedObs6 = settings.selectedObs) === null || _settings$selectedObs6 === void 0 ? void 0 : _settings$selectedObs6.codes), (_settings$selectedObs7 = settings.selectedObs) === null || _settings$selectedObs7 === void 0 ? void 0 : _settings$selectedObs7.omit).map(c => {
|
|
105
|
+
var _settings$selectedObs8;
|
|
106
|
+
return (_settings$selectedObs8 = settings.selectedObs) === null || _settings$selectedObs8 === void 0 ? void 0 : _settings$selectedObs8.codesMap[c];
|
|
107
|
+
}),
|
|
99
108
|
obsIndices: isSliced ? [...(obsIndices || [])] : null,
|
|
100
|
-
scale: settings.controls.scale.violinplot
|
|
109
|
+
scale: settings.controls.scale.violinplot,
|
|
101
110
|
varNamesCol: dataset.varNamesCol
|
|
102
|
-
};
|
|
111
|
+
});
|
|
103
112
|
});
|
|
104
113
|
}
|
|
105
|
-
}, [settings.controls.scale.violinplot
|
|
114
|
+
}, [settings.controls.scale.violinplot, settings.selectedMultiVar, settings.selectedObs, settings.selectedVar, dataset.url, dataset.varNamesCol, obsIndices, isSliced, mode]);
|
|
106
115
|
const {
|
|
107
116
|
fetchedData,
|
|
108
117
|
isPending,
|
|
@@ -128,7 +137,7 @@ function Violin(_ref) {
|
|
|
128
137
|
maxWidth: "100%",
|
|
129
138
|
maxHeight: "100%"
|
|
130
139
|
}
|
|
131
|
-
}), fetchedData
|
|
140
|
+
}), (fetchedData === null || fetchedData === void 0 ? void 0 : fetchedData.resampled) && /*#__PURE__*/_react.default.createElement(_reactBootstrap.Alert, {
|
|
132
141
|
variant: "warning"
|
|
133
142
|
}, /*#__PURE__*/_react.default.createElement("b", null, "Warning:"), " For performance reasons this plot was generated with resampled data. It will not be exactly the same as one produced with the entire dataset. \xA0", /*#__PURE__*/_react.default.createElement(_reactBootstrap.OverlayTrigger, {
|
|
134
143
|
placement: "top",
|
|
@@ -5,27 +5,11 @@ Object.defineProperty(exports, "__esModule", {
|
|
|
5
5
|
});
|
|
6
6
|
exports.ViolinControls = ViolinControls;
|
|
7
7
|
var _react = _interopRequireDefault(require("react"));
|
|
8
|
-
var _lodash = _interopRequireDefault(require("lodash"));
|
|
9
8
|
var _reactBootstrap = require("react-bootstrap");
|
|
10
|
-
var
|
|
11
|
-
var _SettingsContext = require("../../context/SettingsContext");
|
|
9
|
+
var _Controls = require("../controls/Controls");
|
|
12
10
|
function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
|
|
13
11
|
function ViolinControls() {
|
|
14
|
-
|
|
15
|
-
|
|
16
|
-
|
|
17
|
-
key: scale.value,
|
|
18
|
-
active: settings.controls.scale.violinplot === scale,
|
|
19
|
-
onClick: () => {
|
|
20
|
-
dispatch({
|
|
21
|
-
type: "set.controls.scale",
|
|
22
|
-
plot: "violinplot",
|
|
23
|
-
scale: scale
|
|
24
|
-
});
|
|
25
|
-
}
|
|
26
|
-
}, scale.name));
|
|
27
|
-
return /*#__PURE__*/_react.default.createElement(_reactBootstrap.ButtonToolbar, null, /*#__PURE__*/_react.default.createElement(_reactBootstrap.ButtonGroup, null, /*#__PURE__*/_react.default.createElement(_reactBootstrap.InputGroup, null, /*#__PURE__*/_react.default.createElement(_reactBootstrap.InputGroup.Text, null, "Scale"), /*#__PURE__*/_react.default.createElement(_reactBootstrap.Dropdown, null, /*#__PURE__*/_react.default.createElement(_reactBootstrap.Dropdown.Toggle, {
|
|
28
|
-
id: "dropdownStandardScale",
|
|
29
|
-
variant: "light"
|
|
30
|
-
}, settings.controls.scale.violinplot.name), /*#__PURE__*/_react.default.createElement(_reactBootstrap.Dropdown.Menu, null, scaleList)))));
|
|
12
|
+
return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, /*#__PURE__*/_react.default.createElement(_reactBootstrap.Form, null, /*#__PURE__*/_react.default.createElement(_Controls.ScaleSelect, {
|
|
13
|
+
plot: "violinplot"
|
|
14
|
+
})));
|
|
31
15
|
}
|