@haniffalab/cherita-react 1.2.0-dev.2025-05-21.e8f5ce54 → 1.2.0-dev.2025-05-21.6154c7e3

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Files changed (83) hide show
  1. package/dist/cjs/components/controls/Controls.js +60 -0
  2. package/dist/cjs/components/dotplot/Dotplot.js +29 -22
  3. package/dist/cjs/components/dotplot/DotplotControls.js +62 -99
  4. package/dist/cjs/components/full-page/FullPage.js +9 -7
  5. package/dist/cjs/components/full-page/FullPagePseudospatial.js +9 -7
  6. package/dist/cjs/components/heatmap/Heatmap.js +22 -13
  7. package/dist/cjs/components/heatmap/HeatmapControls.js +2 -19
  8. package/dist/cjs/components/matrixplot/Matrixplot.js +25 -16
  9. package/dist/cjs/components/matrixplot/MatrixplotControls.js +4 -34
  10. package/dist/cjs/components/obs-list/ObsItem.js +37 -29
  11. package/dist/cjs/components/obs-list/ObsList.js +47 -44
  12. package/dist/cjs/components/obsm-list/ObsmList.js +9 -6
  13. package/dist/cjs/components/offcanvas/index.js +13 -9
  14. package/dist/cjs/components/pseudospatial/Pseudospatial.js +61 -53
  15. package/dist/cjs/components/pseudospatial/PseudospatialToolbar.js +17 -11
  16. package/dist/cjs/components/scatterplot/Scatterplot.js +52 -52
  17. package/dist/cjs/components/scatterplot/ScatterplotControls.js +11 -24
  18. package/dist/cjs/components/scatterplot/SpatialControls.js +4 -4
  19. package/dist/cjs/components/search-bar/SearchBar.js +12 -10
  20. package/dist/cjs/components/search-bar/SearchInfo.js +14 -13
  21. package/dist/cjs/components/search-bar/SearchResults.js +16 -14
  22. package/dist/cjs/components/var-list/VarItem.js +10 -7
  23. package/dist/cjs/components/var-list/VarList.js +14 -9
  24. package/dist/cjs/components/var-list/VarListToolbar.js +1 -2
  25. package/dist/cjs/components/var-list/VarSet.js +1 -2
  26. package/dist/cjs/components/violin/Violin.js +48 -39
  27. package/dist/cjs/components/violin/ViolinControls.js +4 -20
  28. package/dist/cjs/context/DatasetContext.js +17 -11
  29. package/dist/cjs/context/FilterContext.js +9 -8
  30. package/dist/cjs/context/SettingsContext.js +172 -240
  31. package/dist/cjs/context/ZarrDataContext.js +1 -2
  32. package/dist/cjs/helpers/color-helper.js +3 -3
  33. package/dist/cjs/helpers/zarr-helper.js +15 -12
  34. package/dist/cjs/utils/Filter.js +13 -9
  35. package/dist/cjs/utils/Histogram.js +4 -3
  36. package/dist/cjs/utils/ImageViewer.js +1 -2
  37. package/dist/cjs/utils/Legend.js +3 -3
  38. package/dist/cjs/utils/LoadingIndicators.js +1 -1
  39. package/dist/cjs/utils/VirtualizedList.js +16 -13
  40. package/dist/cjs/utils/errors.js +20 -22
  41. package/dist/cjs/utils/requests.js +13 -10
  42. package/dist/cjs/utils/zarrData.js +12 -8
  43. package/dist/css/cherita.css +13 -9
  44. package/dist/css/cherita.css.map +1 -1
  45. package/dist/esm/components/controls/Controls.js +51 -0
  46. package/dist/esm/components/dotplot/Dotplot.js +28 -20
  47. package/dist/esm/components/dotplot/DotplotControls.js +62 -97
  48. package/dist/esm/components/full-page/FullPage.js +8 -5
  49. package/dist/esm/components/full-page/FullPagePseudospatial.js +8 -5
  50. package/dist/esm/components/heatmap/Heatmap.js +21 -11
  51. package/dist/esm/components/heatmap/HeatmapControls.js +3 -20
  52. package/dist/esm/components/matrixplot/Matrixplot.js +24 -14
  53. package/dist/esm/components/matrixplot/MatrixplotControls.js +5 -35
  54. package/dist/esm/components/obs-list/ObsItem.js +36 -27
  55. package/dist/esm/components/obs-list/ObsList.js +46 -42
  56. package/dist/esm/components/obsm-list/ObsmList.js +8 -4
  57. package/dist/esm/components/offcanvas/index.js +13 -9
  58. package/dist/esm/components/pseudospatial/Pseudospatial.js +60 -51
  59. package/dist/esm/components/pseudospatial/PseudospatialToolbar.js +16 -9
  60. package/dist/esm/components/scatterplot/Scatterplot.js +51 -50
  61. package/dist/esm/components/scatterplot/ScatterplotControls.js +11 -22
  62. package/dist/esm/components/scatterplot/SpatialControls.js +3 -2
  63. package/dist/esm/components/search-bar/SearchBar.js +11 -8
  64. package/dist/esm/components/search-bar/SearchInfo.js +13 -11
  65. package/dist/esm/components/search-bar/SearchResults.js +15 -12
  66. package/dist/esm/components/var-list/VarItem.js +9 -5
  67. package/dist/esm/components/var-list/VarList.js +13 -7
  68. package/dist/esm/components/violin/Violin.js +47 -37
  69. package/dist/esm/components/violin/ViolinControls.js +5 -21
  70. package/dist/esm/context/DatasetContext.js +16 -9
  71. package/dist/esm/context/FilterContext.js +8 -6
  72. package/dist/esm/context/SettingsContext.js +171 -238
  73. package/dist/esm/helpers/color-helper.js +3 -3
  74. package/dist/esm/helpers/zarr-helper.js +15 -12
  75. package/dist/esm/utils/Filter.js +13 -9
  76. package/dist/esm/utils/Histogram.js +4 -3
  77. package/dist/esm/utils/Legend.js +2 -1
  78. package/dist/esm/utils/LoadingIndicators.js +1 -1
  79. package/dist/esm/utils/VirtualizedList.js +15 -11
  80. package/dist/esm/utils/errors.js +20 -22
  81. package/dist/esm/utils/requests.js +13 -10
  82. package/dist/esm/utils/zarrData.js +12 -8
  83. package/package.json +4 -2
@@ -19,9 +19,9 @@ var _offcanvas = require("../offcanvas");
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  var _ScatterplotControls = require("./ScatterplotControls");
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  var _SettingsContext = require("../../context/SettingsContext");
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  function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
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- function _getRequireWildcardCache(e) { if ("function" != typeof WeakMap) return null; var r = new WeakMap(), t = new WeakMap(); return (_getRequireWildcardCache = function (e) { return e ? t : r; })(e); }
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- function _interopRequireWildcard(e, r) { if (!r && e && e.__esModule) return e; if (null === e || "object" != typeof e && "function" != typeof e) return { default: e }; var t = _getRequireWildcardCache(r); if (t && t.has(e)) return t.get(e); var n = { __proto__: null }, a = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var u in e) if ("default" !== u && {}.hasOwnProperty.call(e, u)) { var i = a ? Object.getOwnPropertyDescriptor(e, u) : null; i && (i.get || i.set) ? Object.defineProperty(n, u, i) : n[u] = e[u]; } return n.default = e, t && t.set(e, n), n; }
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+ function _interopRequireWildcard(e, t) { if ("function" == typeof WeakMap) var r = new WeakMap(), n = new WeakMap(); return (_interopRequireWildcard = function (e, t) { if (!t && e && e.__esModule) return e; var o, i, f = { __proto__: null, default: e }; if (null === e || "object" != typeof e && "function" != typeof e) return f; if (o = t ? n : r) { if (o.has(e)) return o.get(e); o.set(e, f); } for (const t in e) "default" !== t && {}.hasOwnProperty.call(e, t) && ((i = (o = Object.defineProperty) && Object.getOwnPropertyDescriptor(e, t)) && (i.get || i.set) ? o(f, t, i) : f[t] = e[t]); return f; })(e, t); }
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  function SpatialControls(_ref) {
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+ var _features$features;
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  let {
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  mode,
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  setMode,
@@ -149,7 +149,7 @@ function SpatialControls(_ref) {
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  onSelect: onSelect
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  }, /*#__PURE__*/_react.default.createElement(_Dropdown.default.Toggle, {
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  id: "dropdown-autoclose-outside",
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- className: `caret-off ${mode === _editModes.DrawPolygonByDraggingMode || mode === _editModes.ModifyMode ? "active" : ""}`
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+ className: "caret-off ".concat(mode === _editModes.DrawPolygonByDraggingMode || mode === _editModes.ModifyMode ? "active" : "")
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  }, /*#__PURE__*/_react.default.createElement(_reactFontawesome.FontAwesomeIcon, {
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  icon: _freeSolidSvgIcons.faDrawPolygon
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  })), /*#__PURE__*/_react.default.createElement(_Dropdown.default.Menu, null, /*#__PURE__*/_react.default.createElement(_Dropdown.default.Header, null, "Polygon tools"), /*#__PURE__*/_react.default.createElement(_Dropdown.default.Item, {
@@ -167,7 +167,7 @@ function SpatialControls(_ref) {
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  }, /*#__PURE__*/_react.default.createElement(_reactFontawesome.FontAwesomeIcon, {
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  icon: _freeSolidSvgIcons.faTrash,
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  className: "nav-icon"
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- }), "Delete polygons"))), !!features?.features?.length && polygonControls, /*#__PURE__*/_react.default.createElement(_Button.default, {
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+ }), "Delete polygons"))), !!(features !== null && features !== void 0 && (_features$features = features.features) !== null && _features$features !== void 0 && _features$features.length) && polygonControls, /*#__PURE__*/_react.default.createElement(_Button.default, {
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  onClick: handleShowControls
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  }, /*#__PURE__*/_react.default.createElement(_reactFontawesome.FontAwesomeIcon, {
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  icon: _freeSolidSvgIcons.faSliders
@@ -18,8 +18,12 @@ var _SearchInfo = require("./SearchInfo");
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  var _SearchResults = require("./SearchResults");
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  var _constants = require("../../constants/constants");
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  function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
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- function _getRequireWildcardCache(e) { if ("function" != typeof WeakMap) return null; var r = new WeakMap(), t = new WeakMap(); return (_getRequireWildcardCache = function (e) { return e ? t : r; })(e); }
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- function _interopRequireWildcard(e, r) { if (!r && e && e.__esModule) return e; if (null === e || "object" != typeof e && "function" != typeof e) return { default: e }; var t = _getRequireWildcardCache(r); if (t && t.has(e)) return t.get(e); var n = { __proto__: null }, a = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var u in e) if ("default" !== u && {}.hasOwnProperty.call(e, u)) { var i = a ? Object.getOwnPropertyDescriptor(e, u) : null; i && (i.get || i.set) ? Object.defineProperty(n, u, i) : n[u] = e[u]; } return n.default = e, t && t.set(e, n), n; }
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+ function _interopRequireWildcard(e, t) { if ("function" == typeof WeakMap) var r = new WeakMap(), n = new WeakMap(); return (_interopRequireWildcard = function (e, t) { if (!t && e && e.__esModule) return e; var o, i, f = { __proto__: null, default: e }; if (null === e || "object" != typeof e && "function" != typeof e) return f; if (o = t ? n : r) { if (o.has(e)) return o.get(e); o.set(e, f); } for (const t in e) "default" !== t && {}.hasOwnProperty.call(e, t) && ((i = (o = Object.defineProperty) && Object.getOwnPropertyDescriptor(e, t)) && (i.get || i.set) ? o(f, t, i) : f[t] = e[t]); return f; })(e, t); }
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+ function ownKeys(e, r) { var t = Object.keys(e); if (Object.getOwnPropertySymbols) { var o = Object.getOwnPropertySymbols(e); r && (o = o.filter(function (r) { return Object.getOwnPropertyDescriptor(e, r).enumerable; })), t.push.apply(t, o); } return t; }
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+ function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t = null != arguments[r] ? arguments[r] : {}; r % 2 ? ownKeys(Object(t), !0).forEach(function (r) { _defineProperty(e, r, t[r]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(e, Object.getOwnPropertyDescriptors(t)) : ownKeys(Object(t)).forEach(function (r) { Object.defineProperty(e, r, Object.getOwnPropertyDescriptor(t, r)); }); } return e; }
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+ function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
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+ function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == typeof i ? i : i + ""; }
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+ function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
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  function onVarSelect(dispatch, item) {
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  dispatch({
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  type: "select.var",
@@ -121,9 +125,9 @@ function SearchModal(_ref2) {
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  className: "flex-column"
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  }, searchVar && /*#__PURE__*/_react.default.createElement(_Nav.default.Item, null, /*#__PURE__*/_react.default.createElement(_Nav.default.Link, {
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  eventKey: FEATURE_TYPE.VAR
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- }, "Genes", " ", !!varResultsLength && `(${varResultsLength})`)), searchDiseases && /*#__PURE__*/_react.default.createElement(_Nav.default.Item, null, /*#__PURE__*/_react.default.createElement(_Nav.default.Link, {
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+ }, "Genes", " ", !!varResultsLength && "(".concat(varResultsLength, ")"))), searchDiseases && /*#__PURE__*/_react.default.createElement(_Nav.default.Item, null, /*#__PURE__*/_react.default.createElement(_Nav.default.Link, {
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  eventKey: FEATURE_TYPE.DISEASE
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- }, "Diseases", " ", !!diseaseResultsLength && `(${diseaseResultsLength})`)))), /*#__PURE__*/_react.default.createElement(_Col.default, {
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+ }, "Diseases", " ", !!diseaseResultsLength && "(".concat(diseaseResultsLength, ")"))))), /*#__PURE__*/_react.default.createElement(_Col.default, {
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  sm: 9,
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  className: "py-3"
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  }, /*#__PURE__*/_react.default.createElement(_Tab.default.Content, null, searchVar && /*#__PURE__*/_react.default.createElement(_Tab.default.Pane, {
@@ -133,10 +137,9 @@ function SearchModal(_ref2) {
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  handleSelect: handleSelect,
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  selectedResult: selectedResult.var,
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  setSelectedResult: item => setSelectedResult(prev => {
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- return {
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- ...prev,
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+ return _objectSpread(_objectSpread({}, prev), {}, {
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  var: item
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- };
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+ });
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  }),
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  setResultsLength: setVarResultsLength
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  })), searchDiseases && /*#__PURE__*/_react.default.createElement(_Tab.default.Pane, {
@@ -145,10 +148,9 @@ function SearchModal(_ref2) {
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  text: text,
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  selectedResult: selectedResult.disease,
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  setSelectedResult: item => setSelectedResult(prev => {
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- return {
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- ...prev,
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+ return _objectSpread(_objectSpread({}, prev), {}, {
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  disease: item
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- };
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+ });
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  }),
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  setResultsLength: setDiseaseResultsLength
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  }))))))), /*#__PURE__*/_react.default.createElement(_Col.default, {
@@ -16,8 +16,12 @@ var _SettingsContext = require("../../context/SettingsContext");
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  var _requests = require("../../utils/requests");
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  var _VarItem = require("../var-list/VarItem");
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  function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
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- function _getRequireWildcardCache(e) { if ("function" != typeof WeakMap) return null; var r = new WeakMap(), t = new WeakMap(); return (_getRequireWildcardCache = function (e) { return e ? t : r; })(e); }
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- function _interopRequireWildcard(e, r) { if (!r && e && e.__esModule) return e; if (null === e || "object" != typeof e && "function" != typeof e) return { default: e }; var t = _getRequireWildcardCache(r); if (t && t.has(e)) return t.get(e); var n = { __proto__: null }, a = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var u in e) if ("default" !== u && {}.hasOwnProperty.call(e, u)) { var i = a ? Object.getOwnPropertyDescriptor(e, u) : null; i && (i.get || i.set) ? Object.defineProperty(n, u, i) : n[u] = e[u]; } return n.default = e, t && t.set(e, n), n; }
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+ function _interopRequireWildcard(e, t) { if ("function" == typeof WeakMap) var r = new WeakMap(), n = new WeakMap(); return (_interopRequireWildcard = function (e, t) { if (!t && e && e.__esModule) return e; var o, i, f = { __proto__: null, default: e }; if (null === e || "object" != typeof e && "function" != typeof e) return f; if (o = t ? n : r) { if (o.has(e)) return o.get(e); o.set(e, f); } for (const t in e) "default" !== t && {}.hasOwnProperty.call(e, t) && ((i = (o = Object.defineProperty) && Object.getOwnPropertyDescriptor(e, t)) && (i.get || i.set) ? o(f, t, i) : f[t] = e[t]); return f; })(e, t); }
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+ function ownKeys(e, r) { var t = Object.keys(e); if (Object.getOwnPropertySymbols) { var o = Object.getOwnPropertySymbols(e); r && (o = o.filter(function (r) { return Object.getOwnPropertyDescriptor(e, r).enumerable; })), t.push.apply(t, o); } return t; }
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+ function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t = null != arguments[r] ? arguments[r] : {}; r % 2 ? ownKeys(Object(t), !0).forEach(function (r) { _defineProperty(e, r, t[r]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(e, Object.getOwnPropertyDescriptors(t)) : ownKeys(Object(t)).forEach(function (r) { Object.defineProperty(e, r, Object.getOwnPropertyDescriptor(t, r)); }); } return e; }
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+ function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
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+ function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == typeof i ? i : i + ""; }
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+ function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
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  function VarInfo(_ref) {
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  let {
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  varItem
@@ -30,10 +34,9 @@ function VarInfo(_ref) {
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  });
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  (0, _react.useEffect)(() => {
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  setParams(p => {
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- return {
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- ...p,
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+ return _objectSpread(_objectSpread({}, p), {}, {
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  geneName: varItem.name
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- };
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+ });
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  });
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  }, [varItem.name]);
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  const {
@@ -44,7 +47,7 @@ function VarInfo(_ref) {
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  refetchOnMount: false,
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  enabled: !!dataset.diseaseDatasets.length
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  });
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- const hasDiseaseInfo = !isPending && !serverError && !!fetchedData?.length;
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+ const hasDiseaseInfo = !isPending && !serverError && !!(fetchedData !== null && fetchedData !== void 0 && fetchedData.length);
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  return /*#__PURE__*/_react.default.createElement("div", null, /*#__PURE__*/_react.default.createElement("h5", null, varItem.name), !!dataset.diseaseDatasets.length && isPending && /*#__PURE__*/_react.default.createElement("p", null, "Loading..."), hasDiseaseInfo && /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, /*#__PURE__*/_react.default.createElement("h6", null, "Associated diseases"), /*#__PURE__*/_react.default.createElement(_VarItem.VarDiseaseInfo, {
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  data: fetchedData
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  })));
@@ -64,13 +67,12 @@ const useVarMean = function (varKeys) {
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  });
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  (0, _react.useEffect)(() => {
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  setParams(p => {
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- return {
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- ...p,
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+ return _objectSpread(_objectSpread({}, p), {}, {
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  varKeys: _lodash.default.map(varKeys, v => v.isSet ? {
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  name: v.name,
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  indices: v.vars.map(v => v.index)
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  } : v.index)
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- };
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+ });
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  });
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  }, [varKeys]);
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  return (0, _requests.useFetch)(ENDPOINT, params, {
@@ -103,10 +105,9 @@ function DiseaseInfo(_ref2) {
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  });
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  (0, _react.useEffect)(() => {
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  setParams(p => {
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- return {
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- ...p,
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+ return _objectSpread(_objectSpread({}, p), {}, {
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  diseaseId: disease.id
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- };
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+ });
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  });
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  }, [disease]);
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  const diseaseData = (0, _requests.useFetch)(ENDPOINT, params, {
@@ -118,7 +119,7 @@ function DiseaseInfo(_ref2) {
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  setDiseaseVars(diseaseData.fetchedData);
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  }
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  }, [diseaseData.fetchedData, diseaseData.isPending, diseaseData.serverError]);
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- const varMeans = useVarMean(diseaseVars, !!diseaseVars?.length && settings.varSort.disease.sort === _constants.VAR_SORT.MATRIX);
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+ const varMeans = useVarMean(diseaseVars, !!(diseaseVars !== null && diseaseVars !== void 0 && diseaseVars.length) && settings.varSort.disease.sort === _constants.VAR_SORT.MATRIX);
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  if (settings.varSort.disease.sort === _constants.VAR_SORT.MATRIX) {
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  if (!varMeans.isPending && !varMeans.serverError) {
@@ -14,8 +14,12 @@ var _SettingsContext = require("../../context/SettingsContext");
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  var _search = require("../../utils/search");
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  var _VirtualizedList = require("../../utils/VirtualizedList");
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  function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
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- function _getRequireWildcardCache(e) { if ("function" != typeof WeakMap) return null; var r = new WeakMap(), t = new WeakMap(); return (_getRequireWildcardCache = function (e) { return e ? t : r; })(e); }
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- function _interopRequireWildcard(e, r) { if (!r && e && e.__esModule) return e; if (null === e || "object" != typeof e && "function" != typeof e) return { default: e }; var t = _getRequireWildcardCache(r); if (t && t.has(e)) return t.get(e); var n = { __proto__: null }, a = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var u in e) if ("default" !== u && {}.hasOwnProperty.call(e, u)) { var i = a ? Object.getOwnPropertyDescriptor(e, u) : null; i && (i.get || i.set) ? Object.defineProperty(n, u, i) : n[u] = e[u]; } return n.default = e, t && t.set(e, n), n; }
17
+ function _interopRequireWildcard(e, t) { if ("function" == typeof WeakMap) var r = new WeakMap(), n = new WeakMap(); return (_interopRequireWildcard = function (e, t) { if (!t && e && e.__esModule) return e; var o, i, f = { __proto__: null, default: e }; if (null === e || "object" != typeof e && "function" != typeof e) return f; if (o = t ? n : r) { if (o.has(e)) return o.get(e); o.set(e, f); } for (const t in e) "default" !== t && {}.hasOwnProperty.call(e, t) && ((i = (o = Object.defineProperty) && Object.getOwnPropertyDescriptor(e, t)) && (i.get || i.set) ? o(f, t, i) : f[t] = e[t]); return f; })(e, t); }
18
+ function ownKeys(e, r) { var t = Object.keys(e); if (Object.getOwnPropertySymbols) { var o = Object.getOwnPropertySymbols(e); r && (o = o.filter(function (r) { return Object.getOwnPropertyDescriptor(e, r).enumerable; })), t.push.apply(t, o); } return t; }
19
+ function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t = null != arguments[r] ? arguments[r] : {}; r % 2 ? ownKeys(Object(t), !0).forEach(function (r) { _defineProperty(e, r, t[r]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(e, Object.getOwnPropertyDescriptors(t)) : ownKeys(Object(t)).forEach(function (r) { Object.defineProperty(e, r, Object.getOwnPropertyDescriptor(t, r)); }); } return e; }
20
+ function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
21
+ function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == typeof i ? i : i + ""; }
22
+ function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
19
23
  function VarSearchResults(_ref) {
20
24
  let {
21
25
  text,
@@ -40,10 +44,9 @@ function VarSearchResults(_ref) {
40
44
  const setData = text => {
41
45
  if (text.length) {
42
46
  setParams(p => {
43
- return {
44
- ...p,
47
+ return _objectSpread(_objectSpread({}, p), {}, {
45
48
  text: text
46
- };
49
+ });
47
50
  });
48
51
  } else {
49
52
  setSuggestions([]);
@@ -57,7 +60,7 @@ function VarSearchResults(_ref) {
57
60
  (0, _react.useEffect)(() => {
58
61
  if (!isPending && !serverError) {
59
62
  setSuggestions(fetchedData);
60
- setResultsLength(fetchedData?.length);
63
+ setResultsLength(fetchedData === null || fetchedData === void 0 ? void 0 : fetchedData.length);
61
64
  }
62
65
  }, [fetchedData, isPending, serverError, setResultsLength]);
63
66
  const getDataAtIndex = index => deferredData[index];
@@ -68,7 +71,7 @@ function VarSearchResults(_ref) {
68
71
  onClick: () => {
69
72
  setSelectedResult(item);
70
73
  },
71
- active: selectedResult?.index === item.index
74
+ active: (selectedResult === null || selectedResult === void 0 ? void 0 : selectedResult.index) === item.index
72
75
  }, /*#__PURE__*/_react.default.createElement("div", {
73
76
  className: "d-flex justify-content-between align-items-center w-100"
74
77
  }, /*#__PURE__*/_react.default.createElement("div", null, item.name), /*#__PURE__*/_react.default.createElement("div", {
@@ -90,7 +93,7 @@ function VarSearchResults(_ref) {
90
93
  }, /*#__PURE__*/_react.default.createElement(_reactBootstrap.ListGroup, {
91
94
  variant: "flush",
92
95
  className: "cherita-list"
93
- }, deferredData?.length ? /*#__PURE__*/_react.default.createElement(_VirtualizedList.VirtualizedList, {
96
+ }, deferredData !== null && deferredData !== void 0 && deferredData.length ? /*#__PURE__*/_react.default.createElement(_VirtualizedList.VirtualizedList, {
94
97
  getDataAtIndex: getDataAtIndex,
95
98
  count: deferredData.length,
96
99
  ItemComponent: ItemComponent,
@@ -125,10 +128,9 @@ function DiseasesSearchResults(_ref2) {
125
128
  const setData = text => {
126
129
  if (text.length) {
127
130
  setParams(p => {
128
- return {
129
- ...p,
131
+ return _objectSpread(_objectSpread({}, p), {}, {
130
132
  text: text
131
- };
133
+ });
132
134
  });
133
135
  } else {
134
136
  setSuggestions([]);
@@ -142,7 +144,7 @@ function DiseasesSearchResults(_ref2) {
142
144
  (0, _react.useEffect)(() => {
143
145
  if (!isPending && !serverError) {
144
146
  setSuggestions(fetchedData);
145
- setResultsLength(fetchedData?.length);
147
+ setResultsLength(fetchedData === null || fetchedData === void 0 ? void 0 : fetchedData.length);
146
148
  }
147
149
  }, [fetchedData, isPending, serverError, setResultsLength]);
148
150
  const getDataAtIndex = index => deferredData[index];
@@ -153,7 +155,7 @@ function DiseasesSearchResults(_ref2) {
153
155
  onClick: () => {
154
156
  setSelectedResult(item);
155
157
  },
156
- active: selectedResult?.id === item.id
158
+ active: (selectedResult === null || selectedResult === void 0 ? void 0 : selectedResult.id) === item.id
157
159
  }, /*#__PURE__*/_react.default.createElement("div", {
158
160
  className: "d-flex justify-content-between align-items-center w-100"
159
161
  }, /*#__PURE__*/_react.default.createElement("div", null, item.disease_name)))));
@@ -162,7 +164,7 @@ function DiseasesSearchResults(_ref2) {
162
164
  }, /*#__PURE__*/_react.default.createElement(_reactBootstrap.ListGroup, {
163
165
  variant: "flush",
164
166
  className: "cherita-list"
165
- }, deferredData?.length ? /*#__PURE__*/_react.default.createElement(_VirtualizedList.VirtualizedList, {
167
+ }, deferredData !== null && deferredData !== void 0 && deferredData.length ? /*#__PURE__*/_react.default.createElement(_VirtualizedList.VirtualizedList, {
166
168
  getDataAtIndex: getDataAtIndex,
167
169
  count: deferredData.length,
168
170
  ItemComponent: ItemComponent,
@@ -19,9 +19,13 @@ var _SettingsContext = require("../../context/SettingsContext");
19
19
  var _Histogram = require("../../utils/Histogram");
20
20
  var _requests = require("../../utils/requests");
21
21
  function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
22
- function _getRequireWildcardCache(e) { if ("function" != typeof WeakMap) return null; var r = new WeakMap(), t = new WeakMap(); return (_getRequireWildcardCache = function (e) { return e ? t : r; })(e); }
23
- function _interopRequireWildcard(e, r) { if (!r && e && e.__esModule) return e; if (null === e || "object" != typeof e && "function" != typeof e) return { default: e }; var t = _getRequireWildcardCache(r); if (t && t.has(e)) return t.get(e); var n = { __proto__: null }, a = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var u in e) if ("default" !== u && {}.hasOwnProperty.call(e, u)) { var i = a ? Object.getOwnPropertyDescriptor(e, u) : null; i && (i.get || i.set) ? Object.defineProperty(n, u, i) : n[u] = e[u]; } return n.default = e, t && t.set(e, n), n; }
22
+ function _interopRequireWildcard(e, t) { if ("function" == typeof WeakMap) var r = new WeakMap(), n = new WeakMap(); return (_interopRequireWildcard = function (e, t) { if (!t && e && e.__esModule) return e; var o, i, f = { __proto__: null, default: e }; if (null === e || "object" != typeof e && "function" != typeof e) return f; if (o = t ? n : r) { if (o.has(e)) return o.get(e); o.set(e, f); } for (const t in e) "default" !== t && {}.hasOwnProperty.call(e, t) && ((i = (o = Object.defineProperty) && Object.getOwnPropertyDescriptor(e, t)) && (i.get || i.set) ? o(f, t, i) : f[t] = e[t]); return f; })(e, t); }
24
23
  function _extends() { return _extends = Object.assign ? Object.assign.bind() : function (n) { for (var e = 1; e < arguments.length; e++) { var t = arguments[e]; for (var r in t) ({}).hasOwnProperty.call(t, r) && (n[r] = t[r]); } return n; }, _extends.apply(null, arguments); }
24
+ function ownKeys(e, r) { var t = Object.keys(e); if (Object.getOwnPropertySymbols) { var o = Object.getOwnPropertySymbols(e); r && (o = o.filter(function (r) { return Object.getOwnPropertyDescriptor(e, r).enumerable; })), t.push.apply(t, o); } return t; }
25
+ function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t = null != arguments[r] ? arguments[r] : {}; r % 2 ? ownKeys(Object(t), !0).forEach(function (r) { _defineProperty(e, r, t[r]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(e, Object.getOwnPropertyDescriptors(t)) : ownKeys(Object(t)).forEach(function (r) { Object.defineProperty(e, r, Object.getOwnPropertyDescriptor(t, r)); }); } return e; }
26
+ function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
27
+ function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == typeof i ? i : i + ""; }
28
+ function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
25
29
  function VarHistogram(_ref) {
26
30
  let {
27
31
  item
@@ -42,10 +46,9 @@ function VarHistogram(_ref) {
42
46
  });
43
47
  (0, _react.useEffect)(() => {
44
48
  setParams(p => {
45
- return {
46
- ...p,
49
+ return _objectSpread(_objectSpread({}, p), {}, {
47
50
  obsIndices: isSliced ? [...(obsIndices || [])] : null
48
- };
51
+ });
49
52
  });
50
53
  }, [obsIndices, isSliced]);
51
54
  const {
@@ -118,9 +121,9 @@ function SelectionItem(_ref3) {
118
121
  refetchOnMount: false,
119
122
  enabled: !!dataset.diseaseDatasets.length
120
123
  });
121
- const hasDiseaseInfo = !isPending && !serverError && !!fetchedData?.length;
124
+ const hasDiseaseInfo = !isPending && !serverError && !!(fetchedData !== null && fetchedData !== void 0 && fetchedData.length);
122
125
  return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, /*#__PURE__*/_react.default.createElement("div", {
123
- className: `d-flex justify-content-between ${hasDiseaseInfo ? "cursor-pointer" : ""}`,
126
+ className: "d-flex justify-content-between ".concat(hasDiseaseInfo ? "cursor-pointer" : ""),
124
127
  onClick: () => {
125
128
  setOpenInfo(o => !o);
126
129
  }
@@ -19,8 +19,12 @@ var _SettingsContext = require("../../context/SettingsContext");
19
19
  var _LoadingIndicators = require("../../utils/LoadingIndicators");
20
20
  var _requests = require("../../utils/requests");
21
21
  function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
22
- function _getRequireWildcardCache(e) { if ("function" != typeof WeakMap) return null; var r = new WeakMap(), t = new WeakMap(); return (_getRequireWildcardCache = function (e) { return e ? t : r; })(e); }
23
- function _interopRequireWildcard(e, r) { if (!r && e && e.__esModule) return e; if (null === e || "object" != typeof e && "function" != typeof e) return { default: e }; var t = _getRequireWildcardCache(r); if (t && t.has(e)) return t.get(e); var n = { __proto__: null }, a = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var u in e) if ("default" !== u && {}.hasOwnProperty.call(e, u)) { var i = a ? Object.getOwnPropertyDescriptor(e, u) : null; i && (i.get || i.set) ? Object.defineProperty(n, u, i) : n[u] = e[u]; } return n.default = e, t && t.set(e, n), n; }
22
+ function _interopRequireWildcard(e, t) { if ("function" == typeof WeakMap) var r = new WeakMap(), n = new WeakMap(); return (_interopRequireWildcard = function (e, t) { if (!t && e && e.__esModule) return e; var o, i, f = { __proto__: null, default: e }; if (null === e || "object" != typeof e && "function" != typeof e) return f; if (o = t ? n : r) { if (o.has(e)) return o.get(e); o.set(e, f); } for (const t in e) "default" !== t && {}.hasOwnProperty.call(e, t) && ((i = (o = Object.defineProperty) && Object.getOwnPropertyDescriptor(e, t)) && (i.get || i.set) ? o(f, t, i) : f[t] = e[t]); return f; })(e, t); }
23
+ function ownKeys(e, r) { var t = Object.keys(e); if (Object.getOwnPropertySymbols) { var o = Object.getOwnPropertySymbols(e); r && (o = o.filter(function (r) { return Object.getOwnPropertyDescriptor(e, r).enumerable; })), t.push.apply(t, o); } return t; }
24
+ function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t = null != arguments[r] ? arguments[r] : {}; r % 2 ? ownKeys(Object(t), !0).forEach(function (r) { _defineProperty(e, r, t[r]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(e, Object.getOwnPropertyDescriptors(t)) : ownKeys(Object(t)).forEach(function (r) { Object.defineProperty(e, r, Object.getOwnPropertyDescriptor(t, r)); }); } return e; }
25
+ function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
26
+ function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == typeof i ? i : i + ""; }
27
+ function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
24
28
  const useVarMean = function (varKeys) {
25
29
  let enabled = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : false;
26
30
  const ENDPOINT = "matrix/mean";
@@ -36,13 +40,12 @@ const useVarMean = function (varKeys) {
36
40
  });
37
41
  (0, _react.useEffect)(() => {
38
42
  setParams(p => {
39
- return {
40
- ...p,
43
+ return _objectSpread(_objectSpread({}, p), {}, {
41
44
  varKeys: _lodash.default.map(varKeys, v => v.isSet ? {
42
45
  name: v.name,
43
46
  indices: v.vars.map(v => v.index)
44
47
  } : v.index)
45
- };
48
+ });
46
49
  });
47
50
  }, [varKeys]);
48
51
  return (0, _requests.useFetch)(ENDPOINT, params, {
@@ -56,17 +59,19 @@ const sortMeans = (i, means) => {
56
59
  return means[i.name] || _lodash.default.min(_lodash.default.values(means)) - 1;
57
60
  };
58
61
  function VarNamesList(_ref) {
62
+ var _settings$selectedVar, _settings$selectedVar2;
59
63
  let {
60
64
  mode = _constants.SELECTION_MODES.SINGLE,
61
65
  displayName = "genes"
62
66
  } = _ref;
63
67
  const settings = (0, _SettingsContext.useSettings)();
64
68
  const dispatch = (0, _SettingsContext.useSettingsDispatch)();
65
- const [active, setActive] = (0, _react.useState)(mode === _constants.SELECTION_MODES.SINGLE ? settings.selectedVar?.matrix_index || settings.selectedVar?.name : settings.selectedMultiVar.map(i => i.matrix_index || i.name));
69
+ const [active, setActive] = (0, _react.useState)(mode === _constants.SELECTION_MODES.SINGLE ? ((_settings$selectedVar = settings.selectedVar) === null || _settings$selectedVar === void 0 ? void 0 : _settings$selectedVar.matrix_index) || ((_settings$selectedVar2 = settings.selectedVar) === null || _settings$selectedVar2 === void 0 ? void 0 : _settings$selectedVar2.name) : settings.selectedMultiVar.map(i => i.matrix_index || i.name));
66
70
  const [sortedVars, setSortedVars] = (0, _react.useState)([]);
67
71
  (0, _react.useEffect)(() => {
68
72
  if (mode === _constants.SELECTION_MODES.SINGLE) {
69
- setActive(settings.selectedVar?.matrix_index || settings.selectedVar?.name);
73
+ var _settings$selectedVar3, _settings$selectedVar4;
74
+ setActive(((_settings$selectedVar3 = settings.selectedVar) === null || _settings$selectedVar3 === void 0 ? void 0 : _settings$selectedVar3.matrix_index) || ((_settings$selectedVar4 = settings.selectedVar) === null || _settings$selectedVar4 === void 0 ? void 0 : _settings$selectedVar4.name));
70
75
  }
71
76
  }, [mode, settings.selectedVar]);
72
77
  (0, _react.useEffect)(() => {
@@ -117,13 +122,13 @@ function VarNamesList(_ref) {
117
122
  });
118
123
  const newSetName = () => {
119
124
  let n = 1;
120
- let setName = `Set ${n}`;
125
+ let setName = "Set ".concat(n);
121
126
  const nameExists = name => {
122
127
  return settings.vars.some(v => v.name === name);
123
128
  };
124
129
  while (nameExists(setName)) {
125
130
  n++;
126
- setName = `Set ${n}`;
131
+ setName = "Set ".concat(n);
127
132
  }
128
133
  return setName;
129
134
  };
@@ -10,8 +10,7 @@ var _reactFontawesome = require("@fortawesome/react-fontawesome");
10
10
  var _reactBootstrap = require("react-bootstrap");
11
11
  var _constants = require("../../constants/constants");
12
12
  var _SettingsContext = require("../../context/SettingsContext");
13
- function _getRequireWildcardCache(e) { if ("function" != typeof WeakMap) return null; var r = new WeakMap(), t = new WeakMap(); return (_getRequireWildcardCache = function (e) { return e ? t : r; })(e); }
14
- function _interopRequireWildcard(e, r) { if (!r && e && e.__esModule) return e; if (null === e || "object" != typeof e && "function" != typeof e) return { default: e }; var t = _getRequireWildcardCache(r); if (t && t.has(e)) return t.get(e); var n = { __proto__: null }, a = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var u in e) if ("default" !== u && {}.hasOwnProperty.call(e, u)) { var i = a ? Object.getOwnPropertyDescriptor(e, u) : null; i && (i.get || i.set) ? Object.defineProperty(n, u, i) : n[u] = e[u]; } return n.default = e, t && t.set(e, n), n; }
13
+ function _interopRequireWildcard(e, t) { if ("function" == typeof WeakMap) var r = new WeakMap(), n = new WeakMap(); return (_interopRequireWildcard = function (e, t) { if (!t && e && e.__esModule) return e; var o, i, f = { __proto__: null, default: e }; if (null === e || "object" != typeof e && "function" != typeof e) return f; if (o = t ? n : r) { if (o.has(e)) return o.get(e); o.set(e, f); } for (const t in e) "default" !== t && {}.hasOwnProperty.call(e, t) && ((i = (o = Object.defineProperty) && Object.getOwnPropertyDescriptor(e, t)) && (i.get || i.set) ? o(f, t, i) : f[t] = e[t]); return f; })(e, t); }
15
14
  // @TODO: set option for "var" and "disease"
16
15
  function VarListToolbar(_ref) {
17
16
  let {
@@ -14,8 +14,7 @@ var _constants = require("../../constants/constants");
14
14
  var _SettingsContext = require("../../context/SettingsContext");
15
15
  var _SearchBar = require("../search-bar/SearchBar");
16
16
  function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
17
- function _getRequireWildcardCache(e) { if ("function" != typeof WeakMap) return null; var r = new WeakMap(), t = new WeakMap(); return (_getRequireWildcardCache = function (e) { return e ? t : r; })(e); }
18
- function _interopRequireWildcard(e, r) { if (!r && e && e.__esModule) return e; if (null === e || "object" != typeof e && "function" != typeof e) return { default: e }; var t = _getRequireWildcardCache(r); if (t && t.has(e)) return t.get(e); var n = { __proto__: null }, a = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var u in e) if ("default" !== u && {}.hasOwnProperty.call(e, u)) { var i = a ? Object.getOwnPropertyDescriptor(e, u) : null; i && (i.get || i.set) ? Object.defineProperty(n, u, i) : n[u] = e[u]; } return n.default = e, t && t.set(e, n), n; }
17
+ function _interopRequireWildcard(e, t) { if ("function" == typeof WeakMap) var r = new WeakMap(), n = new WeakMap(); return (_interopRequireWildcard = function (e, t) { if (!t && e && e.__esModule) return e; var o, i, f = { __proto__: null, default: e }; if (null === e || "object" != typeof e && "function" != typeof e) return f; if (o = t ? n : r) { if (o.has(e)) return o.get(e); o.set(e, f); } for (const t in e) "default" !== t && {}.hasOwnProperty.call(e, t) && ((i = (o = Object.defineProperty) && Object.getOwnPropertyDescriptor(e, t)) && (i.get || i.set) ? o(f, t, i) : f[t] = e[t]); return f; })(e, t); }
19
18
  // @TODO: add button to score genes and plot
20
19
 
21
20
  const addVarToSet = (dispatch, set, v) => {
@@ -17,9 +17,14 @@ var _SettingsContext = require("../../context/SettingsContext");
17
17
  var _LoadingIndicators = require("../../utils/LoadingIndicators");
18
18
  var _requests = require("../../utils/requests");
19
19
  function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
20
- function _getRequireWildcardCache(e) { if ("function" != typeof WeakMap) return null; var r = new WeakMap(), t = new WeakMap(); return (_getRequireWildcardCache = function (e) { return e ? t : r; })(e); }
21
- function _interopRequireWildcard(e, r) { if (!r && e && e.__esModule) return e; if (null === e || "object" != typeof e && "function" != typeof e) return { default: e }; var t = _getRequireWildcardCache(r); if (t && t.has(e)) return t.get(e); var n = { __proto__: null }, a = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var u in e) if ("default" !== u && {}.hasOwnProperty.call(e, u)) { var i = a ? Object.getOwnPropertyDescriptor(e, u) : null; i && (i.get || i.set) ? Object.defineProperty(n, u, i) : n[u] = e[u]; } return n.default = e, t && t.set(e, n), n; }
20
+ function _interopRequireWildcard(e, t) { if ("function" == typeof WeakMap) var r = new WeakMap(), n = new WeakMap(); return (_interopRequireWildcard = function (e, t) { if (!t && e && e.__esModule) return e; var o, i, f = { __proto__: null, default: e }; if (null === e || "object" != typeof e && "function" != typeof e) return f; if (o = t ? n : r) { if (o.has(e)) return o.get(e); o.set(e, f); } for (const t in e) "default" !== t && {}.hasOwnProperty.call(e, t) && ((i = (o = Object.defineProperty) && Object.getOwnPropertyDescriptor(e, t)) && (i.get || i.set) ? o(f, t, i) : f[t] = e[t]); return f; })(e, t); }
21
+ function ownKeys(e, r) { var t = Object.keys(e); if (Object.getOwnPropertySymbols) { var o = Object.getOwnPropertySymbols(e); r && (o = o.filter(function (r) { return Object.getOwnPropertyDescriptor(e, r).enumerable; })), t.push.apply(t, o); } return t; }
22
+ function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t = null != arguments[r] ? arguments[r] : {}; r % 2 ? ownKeys(Object(t), !0).forEach(function (r) { _defineProperty(e, r, t[r]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(e, Object.getOwnPropertyDescriptors(t)) : ownKeys(Object(t)).forEach(function (r) { Object.defineProperty(e, r, Object.getOwnPropertyDescriptor(t, r)); }); } return e; }
23
+ function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
24
+ function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == typeof i ? i : i + ""; }
25
+ function _toPrimitive(t, r) { if ("object" != typeof t || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != typeof i) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
22
26
  function Violin(_ref) {
27
+ var _settings$selectedVar, _settings$selectedVar2, _settings$selectedVar3, _settings$selectedVar4, _settings$selectedObs, _settings$selectedObs2, _settings$selectedObs3;
23
28
  let {
24
29
  mode = _constants.VIOLIN_MODES.MULTIKEY
25
30
  } = _ref;
@@ -33,30 +38,32 @@ function Violin(_ref) {
33
38
  const [data, setData] = (0, _react.useState)([]);
34
39
  const [layout, setLayout] = (0, _react.useState)({});
35
40
  const [hasSelections, setHasSelections] = (0, _react.useState)(false);
36
- const [params, setParams] = (0, _react.useState)({
41
+ const [params, setParams] = (0, _react.useState)(_objectSpread({
37
42
  url: dataset.url,
38
43
  mode: mode,
39
- scale: settings.controls.scale.violinplot.value,
40
- varNamesCol: dataset.varNamesCol,
41
- ...{
42
- [_constants.VIOLIN_MODES.MULTIKEY]: {
43
- varKeys: settings.selectedMultiVar.map(i => i.isSet ? {
44
- name: i.name,
45
- indices: i.vars.map(v => v.index)
46
- } : i.index),
47
- obsKeys: [] // @TODO: implement
48
- },
49
- [_constants.VIOLIN_MODES.GROUPBY]: {
50
- varKey: settings.selectedVar?.isSet ? {
51
- name: settings.selectedVar?.name,
52
- indices: settings.selectedVar?.vars.map(v => v.index)
53
- } : settings.selectedVar?.index,
54
- obsCol: settings.selectedObs,
55
- obsValues: !settings.selectedObs?.omit.length ? null : _lodash.default.difference(_lodash.default.values(settings.selectedObs?.codes), settings.selectedObs?.omit).map(c => settings.selectedObs?.codesMap[c]),
56
- obsIndices: isSliced ? [...(obsIndices || [])] : null
57
- }
58
- }[mode]
59
- });
44
+ scale: settings.controls.scale.violinplot,
45
+ varNamesCol: dataset.varNamesCol
46
+ }, {
47
+ [_constants.VIOLIN_MODES.MULTIKEY]: {
48
+ varKeys: settings.selectedMultiVar.map(i => i.isSet ? {
49
+ name: i.name,
50
+ indices: i.vars.map(v => v.index)
51
+ } : i.index),
52
+ obsKeys: [] // @TODO: implement
53
+ },
54
+ [_constants.VIOLIN_MODES.GROUPBY]: {
55
+ varKey: (_settings$selectedVar = settings.selectedVar) !== null && _settings$selectedVar !== void 0 && _settings$selectedVar.isSet ? {
56
+ name: (_settings$selectedVar2 = settings.selectedVar) === null || _settings$selectedVar2 === void 0 ? void 0 : _settings$selectedVar2.name,
57
+ indices: (_settings$selectedVar3 = settings.selectedVar) === null || _settings$selectedVar3 === void 0 ? void 0 : _settings$selectedVar3.vars.map(v => v.index)
58
+ } : (_settings$selectedVar4 = settings.selectedVar) === null || _settings$selectedVar4 === void 0 ? void 0 : _settings$selectedVar4.index,
59
+ obsCol: settings.selectedObs,
60
+ obsValues: !((_settings$selectedObs = settings.selectedObs) !== null && _settings$selectedObs !== void 0 && _settings$selectedObs.omit.length) ? null : _lodash.default.difference(_lodash.default.values((_settings$selectedObs2 = settings.selectedObs) === null || _settings$selectedObs2 === void 0 ? void 0 : _settings$selectedObs2.codes), (_settings$selectedObs3 = settings.selectedObs) === null || _settings$selectedObs3 === void 0 ? void 0 : _settings$selectedObs3.omit).map(c => {
61
+ var _settings$selectedObs4;
62
+ return (_settings$selectedObs4 = settings.selectedObs) === null || _settings$selectedObs4 === void 0 ? void 0 : _settings$selectedObs4.codesMap[c];
63
+ }),
64
+ obsIndices: isSliced ? [...(obsIndices || [])] : null
65
+ }
66
+ }[mode]));
60
67
  // @TODO: set default scale
61
68
 
62
69
  (0, _react.useEffect)(() => {
@@ -67,17 +74,16 @@ function Violin(_ref) {
67
74
  setHasSelections(false);
68
75
  }
69
76
  setParams(p => {
70
- return {
71
- ...p,
77
+ return _objectSpread(_objectSpread({}, p), {}, {
72
78
  url: dataset.url,
73
79
  mode: mode,
74
80
  varKeys: settings.selectedMultiVar.map(i => i.isSet ? {
75
81
  name: i.name,
76
82
  indices: i.vars.map(v => v.index)
77
83
  } : i.index),
78
- scale: settings.controls.scale.violinplot.value,
84
+ scale: settings.controls.scale.violinplot,
79
85
  varNamesCol: dataset.varNamesCol
80
- };
86
+ });
81
87
  });
82
88
  } else if (mode === _constants.VIOLIN_MODES.GROUPBY) {
83
89
  if (settings.selectedObs && settings.selectedVar) {
@@ -86,23 +92,26 @@ function Violin(_ref) {
86
92
  setHasSelections(false);
87
93
  }
88
94
  setParams(p => {
89
- return {
90
- ...p,
95
+ var _settings$selectedVar5, _settings$selectedVar6, _settings$selectedVar7, _settings$selectedVar8, _settings$selectedObs5, _settings$selectedObs6, _settings$selectedObs7;
96
+ return _objectSpread(_objectSpread({}, p), {}, {
91
97
  url: dataset.url,
92
98
  mode: mode,
93
- varKey: settings.selectedVar?.isSet ? {
94
- name: settings.selectedVar?.name,
95
- indices: settings.selectedVar?.vars.map(v => v.index)
96
- } : settings.selectedVar?.index,
99
+ varKey: (_settings$selectedVar5 = settings.selectedVar) !== null && _settings$selectedVar5 !== void 0 && _settings$selectedVar5.isSet ? {
100
+ name: (_settings$selectedVar6 = settings.selectedVar) === null || _settings$selectedVar6 === void 0 ? void 0 : _settings$selectedVar6.name,
101
+ indices: (_settings$selectedVar7 = settings.selectedVar) === null || _settings$selectedVar7 === void 0 ? void 0 : _settings$selectedVar7.vars.map(v => v.index)
102
+ } : (_settings$selectedVar8 = settings.selectedVar) === null || _settings$selectedVar8 === void 0 ? void 0 : _settings$selectedVar8.index,
97
103
  obsCol: settings.selectedObs,
98
- obsValues: !settings.selectedObs?.omit.length ? null : _lodash.default.difference(_lodash.default.values(settings.selectedObs?.codes), settings.selectedObs?.omit).map(c => settings.selectedObs?.codesMap[c]),
104
+ obsValues: !((_settings$selectedObs5 = settings.selectedObs) !== null && _settings$selectedObs5 !== void 0 && _settings$selectedObs5.omit.length) ? null : _lodash.default.difference(_lodash.default.values((_settings$selectedObs6 = settings.selectedObs) === null || _settings$selectedObs6 === void 0 ? void 0 : _settings$selectedObs6.codes), (_settings$selectedObs7 = settings.selectedObs) === null || _settings$selectedObs7 === void 0 ? void 0 : _settings$selectedObs7.omit).map(c => {
105
+ var _settings$selectedObs8;
106
+ return (_settings$selectedObs8 = settings.selectedObs) === null || _settings$selectedObs8 === void 0 ? void 0 : _settings$selectedObs8.codesMap[c];
107
+ }),
99
108
  obsIndices: isSliced ? [...(obsIndices || [])] : null,
100
- scale: settings.controls.scale.violinplot.value,
109
+ scale: settings.controls.scale.violinplot,
101
110
  varNamesCol: dataset.varNamesCol
102
- };
111
+ });
103
112
  });
104
113
  }
105
- }, [settings.controls.scale.violinplot.value, settings.selectedMultiVar, settings.selectedObs, settings.selectedVar, dataset.url, dataset.varNamesCol, obsIndices, isSliced, mode]);
114
+ }, [settings.controls.scale.violinplot, settings.selectedMultiVar, settings.selectedObs, settings.selectedVar, dataset.url, dataset.varNamesCol, obsIndices, isSliced, mode]);
106
115
  const {
107
116
  fetchedData,
108
117
  isPending,
@@ -128,7 +137,7 @@ function Violin(_ref) {
128
137
  maxWidth: "100%",
129
138
  maxHeight: "100%"
130
139
  }
131
- }), fetchedData?.resampled && /*#__PURE__*/_react.default.createElement(_reactBootstrap.Alert, {
140
+ }), (fetchedData === null || fetchedData === void 0 ? void 0 : fetchedData.resampled) && /*#__PURE__*/_react.default.createElement(_reactBootstrap.Alert, {
132
141
  variant: "warning"
133
142
  }, /*#__PURE__*/_react.default.createElement("b", null, "Warning:"), " For performance reasons this plot was generated with resampled data. It will not be exactly the same as one produced with the entire dataset. \xA0", /*#__PURE__*/_react.default.createElement(_reactBootstrap.OverlayTrigger, {
134
143
  placement: "top",
@@ -5,27 +5,11 @@ Object.defineProperty(exports, "__esModule", {
5
5
  });
6
6
  exports.ViolinControls = ViolinControls;
7
7
  var _react = _interopRequireDefault(require("react"));
8
- var _lodash = _interopRequireDefault(require("lodash"));
9
8
  var _reactBootstrap = require("react-bootstrap");
10
- var _constants = require("../../constants/constants");
11
- var _SettingsContext = require("../../context/SettingsContext");
9
+ var _Controls = require("../controls/Controls");
12
10
  function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
13
11
  function ViolinControls() {
14
- const settings = (0, _SettingsContext.useSettings)();
15
- const dispatch = (0, _SettingsContext.useSettingsDispatch)();
16
- const scaleList = _lodash.default.values(_constants.VIOLINPLOT_SCALES).map(scale => /*#__PURE__*/_react.default.createElement(_reactBootstrap.Dropdown.Item, {
17
- key: scale.value,
18
- active: settings.controls.scale.violinplot === scale,
19
- onClick: () => {
20
- dispatch({
21
- type: "set.controls.scale",
22
- plot: "violinplot",
23
- scale: scale
24
- });
25
- }
26
- }, scale.name));
27
- return /*#__PURE__*/_react.default.createElement(_reactBootstrap.ButtonToolbar, null, /*#__PURE__*/_react.default.createElement(_reactBootstrap.ButtonGroup, null, /*#__PURE__*/_react.default.createElement(_reactBootstrap.InputGroup, null, /*#__PURE__*/_react.default.createElement(_reactBootstrap.InputGroup.Text, null, "Scale"), /*#__PURE__*/_react.default.createElement(_reactBootstrap.Dropdown, null, /*#__PURE__*/_react.default.createElement(_reactBootstrap.Dropdown.Toggle, {
28
- id: "dropdownStandardScale",
29
- variant: "light"
30
- }, settings.controls.scale.violinplot.name), /*#__PURE__*/_react.default.createElement(_reactBootstrap.Dropdown.Menu, null, scaleList)))));
12
+ return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, /*#__PURE__*/_react.default.createElement(_reactBootstrap.Form, null, /*#__PURE__*/_react.default.createElement(_Controls.ScaleSelect, {
13
+ plot: "violinplot"
14
+ })));
31
15
  }