@haniffalab/cherita-react 0.2.0-dev.2025-01-17.f9a0f419 → 0.2.0-dev.2025-01-28.7a60aa67
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +5 -0
- package/dist/components/dotplot/Dotplot.js +19 -26
- package/dist/components/dotplot/DotplotControls.js +106 -147
- package/dist/components/full-page/FullPage.js +99 -153
- package/dist/components/heatmap/Heatmap.js +19 -26
- package/dist/components/heatmap/HeatmapControls.js +7 -13
- package/dist/components/matrixplot/Matrixplot.js +19 -26
- package/dist/components/matrixplot/MatrixplotControls.js +14 -35
- package/dist/components/obs-list/ObsItem.js +182 -239
- package/dist/components/obs-list/ObsList.js +40 -49
- package/dist/components/obs-list/ObsToolbar.js +44 -55
- package/dist/components/obsm-list/ObsmList.js +15 -23
- package/dist/components/offcanvas/index.js +45 -75
- package/dist/components/pseudospatial/Pseudospatial.js +26 -34
- package/dist/components/pseudospatial/PseudospatialControls.js +1 -2
- package/dist/components/pseudospatial/PseudospatialToolbar.js +37 -65
- package/dist/components/scatterplot/Scatterplot.js +74 -89
- package/dist/components/scatterplot/ScatterplotControls.js +28 -39
- package/dist/components/scatterplot/SpatialControls.js +94 -117
- package/dist/components/scatterplot/Toolbox.js +16 -24
- package/dist/components/search-bar/SearchBar.js +45 -54
- package/dist/components/search-bar/SearchResults.js +36 -49
- package/dist/components/var-list/VarItem.js +114 -161
- package/dist/components/var-list/VarList.js +83 -127
- package/dist/components/var-list/VarListToolbar.js +48 -59
- package/dist/components/var-list/VarSet.js +95 -120
- package/dist/components/violin/Violin.js +31 -46
- package/dist/components/violin/ViolinControls.js +8 -22
- package/dist/context/DatasetContext.js +17 -27
- package/dist/context/FilterContext.js +8 -12
- package/dist/context/ZarrDataContext.js +6 -9
- package/dist/helpers/color-helper.js +11 -12
- package/dist/helpers/map-helper.js +7 -8
- package/dist/helpers/zarr-helper.js +9 -15
- package/dist/utils/Histogram.js +34 -41
- package/dist/utils/ImageViewer.js +9 -14
- package/dist/utils/Legend.js +30 -40
- package/dist/utils/LoadingIndicators.js +16 -19
- package/dist/utils/VirtualizedList.js +32 -39
- package/dist/utils/requests.js +15 -25
- package/dist/utils/string.js +4 -9
- package/dist/utils/zarrData.js +2 -8
- package/package.json +40 -34
|
@@ -11,65 +11,54 @@ var _lodash = _interopRequireDefault(require("lodash"));
|
|
|
11
11
|
var _reactBootstrap = require("react-bootstrap");
|
|
12
12
|
var _constants = require("../../constants/constants");
|
|
13
13
|
var _DatasetContext = require("../../context/DatasetContext");
|
|
14
|
-
var _jsxRuntime = require("react/jsx-runtime");
|
|
15
14
|
function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
|
|
16
|
-
function ObsToolbar(
|
|
17
|
-
|
|
18
|
-
|
|
19
|
-
|
|
20
|
-
|
|
21
|
-
|
|
22
|
-
|
|
23
|
-
|
|
24
|
-
|
|
25
|
-
|
|
26
|
-
|
|
27
|
-
} = _ref;
|
|
15
|
+
function ObsToolbar({
|
|
16
|
+
item,
|
|
17
|
+
showToggleAllObs = true,
|
|
18
|
+
showLabel = true,
|
|
19
|
+
showSlice = true,
|
|
20
|
+
showColor = true,
|
|
21
|
+
onToggleAllObs,
|
|
22
|
+
onToggleLabel,
|
|
23
|
+
onToggleSlice,
|
|
24
|
+
onToggleColor
|
|
25
|
+
}) {
|
|
28
26
|
const dataset = (0, _DatasetContext.useDataset)();
|
|
29
27
|
const allToggledOn = !item.omit.length;
|
|
30
28
|
const inLabelObs = _lodash.default.some(dataset.labelObs, i => i.name === item.name);
|
|
31
29
|
const inSliceObs = dataset.sliceBy.obs && dataset.selectedObs?.name === item.name;
|
|
32
30
|
const isColorEncoding = dataset.colorEncoding === _constants.COLOR_ENCODINGS.OBS && dataset.selectedObs?.name === item.name;
|
|
33
|
-
return /*#__PURE__*/
|
|
34
|
-
className: "d-flex"
|
|
35
|
-
|
|
36
|
-
|
|
37
|
-
|
|
38
|
-
|
|
39
|
-
|
|
40
|
-
|
|
41
|
-
|
|
42
|
-
|
|
43
|
-
|
|
44
|
-
|
|
45
|
-
|
|
46
|
-
|
|
47
|
-
|
|
48
|
-
|
|
49
|
-
|
|
50
|
-
|
|
51
|
-
|
|
52
|
-
|
|
53
|
-
|
|
54
|
-
|
|
55
|
-
|
|
56
|
-
|
|
57
|
-
|
|
58
|
-
|
|
59
|
-
|
|
60
|
-
|
|
61
|
-
|
|
62
|
-
|
|
63
|
-
|
|
64
|
-
|
|
65
|
-
|
|
66
|
-
onClick: onToggleColor,
|
|
67
|
-
title: "Set as color encoding",
|
|
68
|
-
children: /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactFontawesome.FontAwesomeIcon, {
|
|
69
|
-
icon: _freeSolidSvgIcons.faDroplet
|
|
70
|
-
})
|
|
71
|
-
})]
|
|
72
|
-
})
|
|
73
|
-
})]
|
|
74
|
-
});
|
|
31
|
+
return /*#__PURE__*/_react.default.createElement("div", {
|
|
32
|
+
className: "d-flex"
|
|
33
|
+
}, /*#__PURE__*/_react.default.createElement("div", {
|
|
34
|
+
className: "flex-grow-1"
|
|
35
|
+
}, showToggleAllObs && /*#__PURE__*/_react.default.createElement(_reactBootstrap.Form.Check, {
|
|
36
|
+
// prettier-ignore
|
|
37
|
+
type: "switch",
|
|
38
|
+
id: "custom-switch",
|
|
39
|
+
label: "Toggle all",
|
|
40
|
+
checked: allToggledOn,
|
|
41
|
+
onChange: onToggleAllObs
|
|
42
|
+
})), /*#__PURE__*/_react.default.createElement("div", null, /*#__PURE__*/_react.default.createElement(_reactBootstrap.ButtonGroup, null, showLabel && /*#__PURE__*/_react.default.createElement(_reactBootstrap.Button, {
|
|
43
|
+
variant: inLabelObs ? "primary" : "outline-primary",
|
|
44
|
+
size: "sm",
|
|
45
|
+
onClick: onToggleLabel,
|
|
46
|
+
title: "Add to tooltip"
|
|
47
|
+
}, /*#__PURE__*/_react.default.createElement(_reactFontawesome.FontAwesomeIcon, {
|
|
48
|
+
icon: _freeSolidSvgIcons.faFont
|
|
49
|
+
})), showSlice && /*#__PURE__*/_react.default.createElement(_reactBootstrap.Button, {
|
|
50
|
+
variant: inSliceObs ? "primary" : "outline-primary",
|
|
51
|
+
size: "sm",
|
|
52
|
+
onClick: onToggleSlice,
|
|
53
|
+
title: "Slice to selected"
|
|
54
|
+
}, /*#__PURE__*/_react.default.createElement(_reactFontawesome.FontAwesomeIcon, {
|
|
55
|
+
icon: _freeSolidSvgIcons.faEye
|
|
56
|
+
})), showColor && /*#__PURE__*/_react.default.createElement(_reactBootstrap.Button, {
|
|
57
|
+
variant: isColorEncoding ? "primary" : "outline-primary",
|
|
58
|
+
size: "sm",
|
|
59
|
+
onClick: onToggleColor,
|
|
60
|
+
title: "Set as color encoding"
|
|
61
|
+
}, /*#__PURE__*/_react.default.createElement(_reactFontawesome.FontAwesomeIcon, {
|
|
62
|
+
icon: _freeSolidSvgIcons.faDroplet
|
|
63
|
+
})))));
|
|
75
64
|
}
|
|
@@ -9,7 +9,6 @@ var _reactBootstrap = require("react-bootstrap");
|
|
|
9
9
|
var _DatasetContext = require("../../context/DatasetContext");
|
|
10
10
|
var _LoadingIndicators = require("../../utils/LoadingIndicators");
|
|
11
11
|
var _requests = require("../../utils/requests");
|
|
12
|
-
var _jsxRuntime = require("react/jsx-runtime");
|
|
13
12
|
function _getRequireWildcardCache(e) { if ("function" != typeof WeakMap) return null; var r = new WeakMap(), t = new WeakMap(); return (_getRequireWildcardCache = function (e) { return e ? t : r; })(e); }
|
|
14
13
|
function _interopRequireWildcard(e, r) { if (!r && e && e.__esModule) return e; if (null === e || "object" != typeof e && "function" != typeof e) return { default: e }; var t = _getRequireWildcardCache(r); if (t && t.has(e)) return t.get(e); var n = { __proto__: null }, a = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var u in e) if ("default" !== u && {}.hasOwnProperty.call(e, u)) { var i = a ? Object.getOwnPropertyDescriptor(e, u) : null; i && (i.get || i.set) ? Object.defineProperty(n, u, i) : n[u] = e[u]; } return n.default = e, t && t.set(e, n), n; }
|
|
15
14
|
function ObsmKeysList() {
|
|
@@ -47,42 +46,35 @@ function ObsmKeysList() {
|
|
|
47
46
|
}
|
|
48
47
|
}, [dataset.selectedObsm]);
|
|
49
48
|
const obsmList = obsmKeysList.map(item => {
|
|
50
|
-
return /*#__PURE__*/
|
|
49
|
+
return /*#__PURE__*/_react.default.createElement(_reactBootstrap.Dropdown.Item, {
|
|
50
|
+
key: item,
|
|
51
51
|
className: `custom ${active === item && "active"}`,
|
|
52
52
|
onClick: () => {
|
|
53
53
|
dispatch({
|
|
54
54
|
type: "select.obsm",
|
|
55
55
|
obsm: item
|
|
56
56
|
});
|
|
57
|
-
}
|
|
58
|
-
children: item
|
|
57
|
+
}
|
|
59
58
|
}, item);
|
|
60
59
|
});
|
|
61
60
|
if (!serverError) {
|
|
62
|
-
return /*#__PURE__*/(
|
|
63
|
-
|
|
64
|
-
|
|
65
|
-
|
|
66
|
-
|
|
67
|
-
|
|
68
|
-
|
|
69
|
-
children: obsmList
|
|
70
|
-
})]
|
|
71
|
-
});
|
|
61
|
+
return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, isPending && /*#__PURE__*/_react.default.createElement(_LoadingIndicators.LoadingSpinner, null), /*#__PURE__*/_react.default.createElement(_reactBootstrap.DropdownButton, {
|
|
62
|
+
as: _reactBootstrap.ButtonGroup,
|
|
63
|
+
title: dataset.selectedObsm || "Select an embedding",
|
|
64
|
+
variant: dataset.selectedObsm ? "primary" : "outline-primary",
|
|
65
|
+
id: "bg-nested-dropdown",
|
|
66
|
+
size: "sm"
|
|
67
|
+
}, obsmList));
|
|
72
68
|
} else {
|
|
73
|
-
return /*#__PURE__*/
|
|
69
|
+
return /*#__PURE__*/_react.default.createElement(_reactBootstrap.OverlayTrigger, {
|
|
74
70
|
placement: "top",
|
|
75
71
|
delay: {
|
|
76
72
|
show: 100,
|
|
77
73
|
hide: 200
|
|
78
74
|
},
|
|
79
|
-
overlay: /*#__PURE__*/
|
|
80
|
-
|
|
81
|
-
|
|
82
|
-
|
|
83
|
-
variant: "danger",
|
|
84
|
-
children: "Error"
|
|
85
|
-
})
|
|
86
|
-
});
|
|
75
|
+
overlay: /*#__PURE__*/_react.default.createElement(_reactBootstrap.Tooltip, null, serverError.message)
|
|
76
|
+
}, /*#__PURE__*/_react.default.createElement(_reactBootstrap.Button, {
|
|
77
|
+
variant: "danger"
|
|
78
|
+
}, "Error"));
|
|
87
79
|
}
|
|
88
80
|
}
|
|
@@ -14,89 +14,59 @@ var _ObsList = require("../obs-list/ObsList");
|
|
|
14
14
|
var _ObsmList = require("../obsm-list/ObsmList");
|
|
15
15
|
var _SearchBar = require("../search-bar/SearchBar");
|
|
16
16
|
var _VarList = require("../var-list/VarList");
|
|
17
|
-
var _jsxRuntime = require("react/jsx-runtime");
|
|
18
17
|
function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
|
|
19
|
-
function OffcanvasObs(
|
|
20
|
-
|
|
21
|
-
|
|
22
|
-
|
|
23
|
-
|
|
24
|
-
|
|
25
|
-
return /*#__PURE__*/(0, _jsxRuntime.jsxs)(_Offcanvas.default, {
|
|
18
|
+
function OffcanvasObs({
|
|
19
|
+
show,
|
|
20
|
+
handleClose,
|
|
21
|
+
...props
|
|
22
|
+
}) {
|
|
23
|
+
return /*#__PURE__*/_react.React.createElement(_Offcanvas.default, {
|
|
26
24
|
show: show,
|
|
27
25
|
onHide: handleClose,
|
|
28
26
|
scroll: true,
|
|
29
|
-
backdrop: false
|
|
30
|
-
|
|
31
|
-
|
|
32
|
-
|
|
33
|
-
|
|
34
|
-
|
|
35
|
-
}), /*#__PURE__*/(0, _jsxRuntime.jsx)(_Offcanvas.default.Body, {
|
|
36
|
-
className: "p-0",
|
|
37
|
-
children: /*#__PURE__*/(0, _jsxRuntime.jsx)(_ObsList.ObsColsList, {
|
|
38
|
-
...props
|
|
39
|
-
})
|
|
40
|
-
})]
|
|
41
|
-
});
|
|
27
|
+
backdrop: false
|
|
28
|
+
}, /*#__PURE__*/_react.React.createElement(_Offcanvas.default.Header, {
|
|
29
|
+
closeButton: true
|
|
30
|
+
}, /*#__PURE__*/_react.React.createElement(_Offcanvas.default.Title, null, "Categories")), /*#__PURE__*/_react.React.createElement(_Offcanvas.default.Body, {
|
|
31
|
+
className: "p-0"
|
|
32
|
+
}, /*#__PURE__*/_react.React.createElement(_ObsList.ObsColsList, props)));
|
|
42
33
|
}
|
|
43
|
-
function OffcanvasObsm(
|
|
44
|
-
|
|
45
|
-
|
|
46
|
-
|
|
47
|
-
|
|
48
|
-
return /*#__PURE__*/(0, _jsxRuntime.jsxs)(_Offcanvas.default, {
|
|
34
|
+
function OffcanvasObsm({
|
|
35
|
+
show,
|
|
36
|
+
handleClose
|
|
37
|
+
}) {
|
|
38
|
+
return /*#__PURE__*/_react.React.createElement(_Offcanvas.default, {
|
|
49
39
|
show: show,
|
|
50
|
-
onHide: handleClose
|
|
51
|
-
|
|
52
|
-
|
|
53
|
-
|
|
54
|
-
children: "Embedding space"
|
|
55
|
-
})
|
|
56
|
-
}), /*#__PURE__*/(0, _jsxRuntime.jsx)(_Offcanvas.default.Body, {
|
|
57
|
-
children: /*#__PURE__*/(0, _jsxRuntime.jsx)(_ObsmList.ObsmKeysList, {})
|
|
58
|
-
})]
|
|
59
|
-
});
|
|
40
|
+
onHide: handleClose
|
|
41
|
+
}, /*#__PURE__*/_react.React.createElement(_Offcanvas.default.Header, {
|
|
42
|
+
closeButton: true
|
|
43
|
+
}, /*#__PURE__*/_react.React.createElement(_Offcanvas.default.Title, null, "Embedding space")), /*#__PURE__*/_react.React.createElement(_Offcanvas.default.Body, null, /*#__PURE__*/_react.React.createElement(_ObsmList.ObsmKeysList, null)));
|
|
60
44
|
}
|
|
61
|
-
function OffcanvasVars(
|
|
62
|
-
|
|
63
|
-
|
|
64
|
-
|
|
65
|
-
|
|
66
|
-
|
|
67
|
-
return /*#__PURE__*/(0, _jsxRuntime.jsxs)(_Offcanvas.default, {
|
|
45
|
+
function OffcanvasVars({
|
|
46
|
+
show,
|
|
47
|
+
handleClose,
|
|
48
|
+
mode = _constants.SELECTION_MODES.MULTIPLE
|
|
49
|
+
}) {
|
|
50
|
+
return /*#__PURE__*/_react.React.createElement(_Offcanvas.default, {
|
|
68
51
|
show: show,
|
|
69
|
-
onHide: handleClose
|
|
70
|
-
|
|
71
|
-
|
|
72
|
-
|
|
73
|
-
|
|
74
|
-
|
|
75
|
-
|
|
76
|
-
|
|
77
|
-
searchDiseases: true
|
|
78
|
-
}), /*#__PURE__*/(0, _jsxRuntime.jsx)(_VarList.VarNamesList, {
|
|
79
|
-
mode: mode
|
|
80
|
-
})]
|
|
81
|
-
})]
|
|
82
|
-
});
|
|
52
|
+
onHide: handleClose
|
|
53
|
+
}, /*#__PURE__*/_react.React.createElement(_Offcanvas.default.Header, {
|
|
54
|
+
closeButton: true
|
|
55
|
+
}, /*#__PURE__*/_react.React.createElement(_Offcanvas.default.Title, null, "Features")), /*#__PURE__*/_react.React.createElement(_Offcanvas.default.Body, null, /*#__PURE__*/_react.React.createElement(_SearchBar.SearchBar, {
|
|
56
|
+
searchDiseases: true
|
|
57
|
+
}), /*#__PURE__*/_react.React.createElement(_VarList.VarNamesList, {
|
|
58
|
+
mode: mode
|
|
59
|
+
})));
|
|
83
60
|
}
|
|
84
|
-
function OffcanvasControls(
|
|
85
|
-
|
|
86
|
-
|
|
87
|
-
|
|
88
|
-
|
|
89
|
-
|
|
90
|
-
return /*#__PURE__*/(0, _jsxRuntime.jsxs)(_Offcanvas.default, {
|
|
61
|
+
function OffcanvasControls({
|
|
62
|
+
show,
|
|
63
|
+
handleClose,
|
|
64
|
+
Controls
|
|
65
|
+
}) {
|
|
66
|
+
return /*#__PURE__*/_react.React.createElement(_Offcanvas.default, {
|
|
91
67
|
show: show,
|
|
92
|
-
onHide: handleClose
|
|
93
|
-
|
|
94
|
-
|
|
95
|
-
|
|
96
|
-
children: "Controls"
|
|
97
|
-
})
|
|
98
|
-
}), /*#__PURE__*/(0, _jsxRuntime.jsx)(_Offcanvas.default.Body, {
|
|
99
|
-
children: /*#__PURE__*/(0, _jsxRuntime.jsx)(Controls, {})
|
|
100
|
-
})]
|
|
101
|
-
});
|
|
68
|
+
onHide: handleClose
|
|
69
|
+
}, /*#__PURE__*/_react.React.createElement(_Offcanvas.default.Header, {
|
|
70
|
+
closeButton: true
|
|
71
|
+
}, /*#__PURE__*/_react.React.createElement(_Offcanvas.default.Title, null, "Controls")), /*#__PURE__*/_react.React.createElement(_Offcanvas.default.Body, null, /*#__PURE__*/_react.React.createElement(Controls, null)));
|
|
102
72
|
}
|
|
@@ -18,7 +18,6 @@ var _ImageViewer = require("../../utils/ImageViewer");
|
|
|
18
18
|
var _Legend = require("../../utils/Legend");
|
|
19
19
|
var _LoadingIndicators = require("../../utils/LoadingIndicators");
|
|
20
20
|
var _requests = require("../../utils/requests");
|
|
21
|
-
var _jsxRuntime = require("react/jsx-runtime");
|
|
22
21
|
function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
|
|
23
22
|
function _getRequireWildcardCache(e) { if ("function" != typeof WeakMap) return null; var r = new WeakMap(), t = new WeakMap(); return (_getRequireWildcardCache = function (e) { return e ? t : r; })(e); }
|
|
24
23
|
function _interopRequireWildcard(e, r) { if (!r && e && e.__esModule) return e; if (null === e || "object" != typeof e && "function" != typeof e) return { default: e }; var t = _getRequireWildcardCache(r); if (t && t.has(e)) return t.get(e); var n = { __proto__: null }, a = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var u in e) if ("default" !== u && {}.hasOwnProperty.call(e, u)) { var i = a ? Object.getOwnPropertyDescriptor(e, u) : null; i && (i.get || i.set) ? Object.defineProperty(n, u, i) : n[u] = e[u]; } return n.default = e, t && t.set(e, n), n; }
|
|
@@ -75,11 +74,10 @@ function usePseudospatialData(plotType) {
|
|
|
75
74
|
enabled: !!plotType && !!dataset.pseudospatial.maskSet
|
|
76
75
|
});
|
|
77
76
|
}
|
|
78
|
-
function Pseudospatial(
|
|
79
|
-
|
|
80
|
-
|
|
81
|
-
|
|
82
|
-
} = _ref;
|
|
77
|
+
function Pseudospatial({
|
|
78
|
+
showLegend = true,
|
|
79
|
+
sharedScaleRange = false
|
|
80
|
+
}) {
|
|
83
81
|
const dataset = (0, _DatasetContext.useDataset)();
|
|
84
82
|
const [data, setData] = (0, _react.useState)([]);
|
|
85
83
|
const [layout, setLayout] = (0, _react.useState)({});
|
|
@@ -178,33 +176,27 @@ function Pseudospatial(_ref) {
|
|
|
178
176
|
}, [dataset.controls.range, dataset.controls.valueMax, dataset.controls.valueMin, dataset.controls.valueRange, getColor, sharedScaleRange]);
|
|
179
177
|
const hasSelections = !!plotType && !!dataset.pseudospatial.maskSet;
|
|
180
178
|
if (!serverError) {
|
|
181
|
-
return /*#__PURE__*/
|
|
182
|
-
className: "cherita-pseudospatial position-relative"
|
|
183
|
-
|
|
184
|
-
|
|
185
|
-
|
|
186
|
-
|
|
187
|
-
|
|
188
|
-
|
|
189
|
-
|
|
190
|
-
|
|
191
|
-
|
|
192
|
-
|
|
193
|
-
|
|
194
|
-
|
|
195
|
-
|
|
196
|
-
|
|
197
|
-
|
|
198
|
-
})]
|
|
199
|
-
})]
|
|
200
|
-
});
|
|
179
|
+
return /*#__PURE__*/_react.default.createElement("div", {
|
|
180
|
+
className: "cherita-pseudospatial position-relative"
|
|
181
|
+
}, /*#__PURE__*/_react.default.createElement(_PseudospatialToolbar.PseudospatialToolbar, {
|
|
182
|
+
plotType: plotType
|
|
183
|
+
}), /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, hasSelections && isPending && /*#__PURE__*/_react.default.createElement(_LoadingIndicators.LoadingSpinner, null), hasSelections && /*#__PURE__*/_react.default.createElement(_reactPlotly.default, {
|
|
184
|
+
data: data,
|
|
185
|
+
layout: layout,
|
|
186
|
+
useResizeHandler: true,
|
|
187
|
+
className: "cherita-pseudospatial-plot",
|
|
188
|
+
config: {
|
|
189
|
+
displaylogo: false
|
|
190
|
+
}
|
|
191
|
+
}), hasSelections && showLegend && /*#__PURE__*/_react.default.createElement(_Legend.Legend, {
|
|
192
|
+
min: layout?.coloraxis?.cmin,
|
|
193
|
+
max: layout?.coloraxis?.cmax,
|
|
194
|
+
addText: plotType === _constants.PSEUDOSPATIAL_PLOT_TYPES.GENE ? " - Mean expression" : plotType === _constants.PSEUDOSPATIAL_PLOT_TYPES.CATEGORICAL ? " - %" : plotType === _constants.PSEUDOSPATIAL_PLOT_TYPES.CONTINUOUS ? " - Mean value" : ""
|
|
195
|
+
})));
|
|
201
196
|
} else {
|
|
202
|
-
return /*#__PURE__*/(
|
|
203
|
-
|
|
204
|
-
|
|
205
|
-
children: serverError.message
|
|
206
|
-
})
|
|
207
|
-
});
|
|
197
|
+
return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, /*#__PURE__*/_react.default.createElement(_reactBootstrap.Alert, {
|
|
198
|
+
variant: "danger"
|
|
199
|
+
}, serverError.message));
|
|
208
200
|
}
|
|
209
201
|
}
|
|
210
202
|
|
|
@@ -212,11 +204,11 @@ function Pseudospatial(_ref) {
|
|
|
212
204
|
function PseudospatialImage() {
|
|
213
205
|
const dataset = (0, _DatasetContext.useDataset)();
|
|
214
206
|
if (dataset.imageUrl) {
|
|
215
|
-
return /*#__PURE__*/
|
|
207
|
+
return /*#__PURE__*/_react.default.createElement(_ImageViewer.ImageViewer, {
|
|
216
208
|
src: dataset.imageUrl,
|
|
217
209
|
alt: "Pseudospatial reference image"
|
|
218
210
|
});
|
|
219
211
|
} else {
|
|
220
|
-
return /*#__PURE__*/
|
|
212
|
+
return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null);
|
|
221
213
|
}
|
|
222
214
|
}
|
|
@@ -5,8 +5,7 @@ Object.defineProperty(exports, "__esModule", {
|
|
|
5
5
|
});
|
|
6
6
|
exports.PseudospatialControls = PseudospatialControls;
|
|
7
7
|
var _react = _interopRequireDefault(require("react"));
|
|
8
|
-
var _jsxRuntime = require("react/jsx-runtime");
|
|
9
8
|
function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
|
|
10
9
|
function PseudospatialControls() {
|
|
11
|
-
return /*#__PURE__*/
|
|
10
|
+
return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null);
|
|
12
11
|
}
|
|
@@ -10,34 +10,28 @@ var _reactBootstrap = require("react-bootstrap");
|
|
|
10
10
|
var _constants = require("../../constants/constants");
|
|
11
11
|
var _DatasetContext = require("../../context/DatasetContext");
|
|
12
12
|
var _requests = require("../../utils/requests");
|
|
13
|
-
var _jsxRuntime = require("react/jsx-runtime");
|
|
14
13
|
function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e }; }
|
|
15
14
|
function _getRequireWildcardCache(e) { if ("function" != typeof WeakMap) return null; var r = new WeakMap(), t = new WeakMap(); return (_getRequireWildcardCache = function (e) { return e ? t : r; })(e); }
|
|
16
15
|
function _interopRequireWildcard(e, r) { if (!r && e && e.__esModule) return e; if (null === e || "object" != typeof e && "function" != typeof e) return { default: e }; var t = _getRequireWildcardCache(r); if (t && t.has(e)) return t.get(e); var n = { __proto__: null }, a = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var u in e) if ("default" !== u && {}.hasOwnProperty.call(e, u)) { var i = a ? Object.getOwnPropertyDescriptor(e, u) : null; i && (i.get || i.set) ? Object.defineProperty(n, u, i) : n[u] = e[u]; } return n.default = e, t && t.set(e, n), n; }
|
|
17
16
|
function CategoricalMode() {
|
|
18
17
|
const dataset = (0, _DatasetContext.useDataset)();
|
|
19
18
|
const dispatch = (0, _DatasetContext.useDatasetDispatch)();
|
|
20
|
-
const modeList = _lodash.default.map(_constants.PSEUDOSPATIAL_CATEGORICAL_MODES, (m, key) => /*#__PURE__*/
|
|
19
|
+
const modeList = _lodash.default.map(_constants.PSEUDOSPATIAL_CATEGORICAL_MODES, (m, key) => /*#__PURE__*/_react.default.createElement(_reactBootstrap.Dropdown.Item, {
|
|
20
|
+
key: key,
|
|
21
21
|
active: dataset.pseudospatial.categoricalMode === m,
|
|
22
22
|
onClick: () => {
|
|
23
23
|
dispatch({
|
|
24
24
|
type: "set.pseudospatial.categoricalMode",
|
|
25
25
|
categoricalMode: m.value
|
|
26
26
|
});
|
|
27
|
-
}
|
|
28
|
-
|
|
29
|
-
}, key));
|
|
27
|
+
}
|
|
28
|
+
}, _lodash.default.capitalize(m.name)));
|
|
30
29
|
const mode = _lodash.default.find(_constants.PSEUDOSPATIAL_CATEGORICAL_MODES, {
|
|
31
30
|
value: dataset.pseudospatial.categoricalMode
|
|
32
31
|
});
|
|
33
|
-
return /*#__PURE__*/(
|
|
34
|
-
|
|
35
|
-
|
|
36
|
-
children: _lodash.default.capitalize(mode.name)
|
|
37
|
-
}), /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.Dropdown.Menu, {
|
|
38
|
-
children: modeList
|
|
39
|
-
})]
|
|
40
|
-
});
|
|
32
|
+
return /*#__PURE__*/_react.default.createElement(_reactBootstrap.Dropdown, null, /*#__PURE__*/_react.default.createElement(_reactBootstrap.Dropdown.Toggle, {
|
|
33
|
+
variant: "light"
|
|
34
|
+
}, _lodash.default.capitalize(mode.name)), /*#__PURE__*/_react.default.createElement(_reactBootstrap.Dropdown.Menu, null, modeList));
|
|
41
35
|
}
|
|
42
36
|
function MaskSet() {
|
|
43
37
|
const ENDPOINT = "masks";
|
|
@@ -67,16 +61,16 @@ function MaskSet() {
|
|
|
67
61
|
setMaskSets(fetchedData);
|
|
68
62
|
}
|
|
69
63
|
}, [fetchedData, isPending, serverError]);
|
|
70
|
-
const maskSetList = _lodash.default.map(maskSets, (ms, key) => /*#__PURE__*/
|
|
64
|
+
const maskSetList = _lodash.default.map(maskSets, (ms, key) => /*#__PURE__*/_react.default.createElement(_reactBootstrap.Dropdown.Item, {
|
|
65
|
+
key: key,
|
|
71
66
|
active: dataset.pseudospatial.maskSet === key,
|
|
72
67
|
onClick: () => {
|
|
73
68
|
dispatch({
|
|
74
69
|
type: "set.pseudospatial.maskSet",
|
|
75
70
|
maskSet: key
|
|
76
71
|
});
|
|
77
|
-
}
|
|
78
|
-
|
|
79
|
-
}, key));
|
|
72
|
+
}
|
|
73
|
+
}, _lodash.default.capitalize(key)));
|
|
80
74
|
const handleMaskChange = mask => {
|
|
81
75
|
let newMasks = dataset.pseudospatial.maskValues || maskSets?.[dataset.pseudospatial?.maskSet];
|
|
82
76
|
newMasks = newMasks.includes(mask) ? newMasks.filter(m => m !== mask) : [...newMasks, mask];
|
|
@@ -101,57 +95,35 @@ function MaskSet() {
|
|
|
101
95
|
});
|
|
102
96
|
}
|
|
103
97
|
};
|
|
104
|
-
const masksList = _lodash.default.map(maskSets?.[dataset.pseudospatial?.maskSet], mask => /*#__PURE__*/
|
|
105
|
-
|
|
106
|
-
|
|
107
|
-
|
|
108
|
-
|
|
109
|
-
|
|
110
|
-
|
|
111
|
-
}
|
|
98
|
+
const masksList = _lodash.default.map(maskSets?.[dataset.pseudospatial?.maskSet], mask => /*#__PURE__*/_react.default.createElement(_reactBootstrap.Dropdown.ItemText, {
|
|
99
|
+
key: mask
|
|
100
|
+
}, /*#__PURE__*/_react.default.createElement(_reactBootstrap.Form.Check, {
|
|
101
|
+
type: "checkbox",
|
|
102
|
+
label: mask,
|
|
103
|
+
checked: !dataset.pseudospatial.maskValues || dataset.pseudospatial.maskValues.includes(mask),
|
|
104
|
+
onChange: () => handleMaskChange(mask)
|
|
105
|
+
})));
|
|
112
106
|
const nMasks = dataset.pseudospatial.maskValues ? dataset.pseudospatial.maskValues?.length : maskSets?.[dataset.pseudospatial?.maskSet]?.length || "No";
|
|
113
107
|
const toggleAllChecked = !dataset.pseudospatial.maskValues || dataset.pseudospatial.maskValues?.length === maskSets?.[dataset.pseudospatial?.maskSet]?.length;
|
|
114
|
-
return /*#__PURE__*/(
|
|
115
|
-
|
|
116
|
-
|
|
117
|
-
|
|
118
|
-
|
|
119
|
-
|
|
120
|
-
|
|
121
|
-
|
|
122
|
-
|
|
123
|
-
|
|
124
|
-
|
|
125
|
-
|
|
126
|
-
variant: "light",
|
|
127
|
-
children: [nMasks, " masks selected"]
|
|
128
|
-
}), /*#__PURE__*/(0, _jsxRuntime.jsxs)(_reactBootstrap.Dropdown.Menu, {
|
|
129
|
-
children: [/*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.Dropdown.Header, {
|
|
130
|
-
children: "Masks"
|
|
131
|
-
}), /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.Dropdown.ItemText, {
|
|
132
|
-
children: /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.Form.Check, {
|
|
133
|
-
type: "checkbox",
|
|
134
|
-
label: "Toggle all",
|
|
135
|
-
checked: toggleAllChecked,
|
|
136
|
-
onChange: toggleMasks
|
|
137
|
-
})
|
|
138
|
-
}, "toggle-all"), masksList]
|
|
139
|
-
})]
|
|
140
|
-
})]
|
|
141
|
-
});
|
|
108
|
+
return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, /*#__PURE__*/_react.default.createElement(_reactBootstrap.Dropdown, null, /*#__PURE__*/_react.default.createElement(_reactBootstrap.Dropdown.Toggle, {
|
|
109
|
+
variant: "light"
|
|
110
|
+
}, _lodash.default.capitalize(dataset.pseudospatial.maskSet || "Select a mask set")), /*#__PURE__*/_react.default.createElement(_reactBootstrap.Dropdown.Menu, null, /*#__PURE__*/_react.default.createElement(_reactBootstrap.Dropdown.Header, null, "Mask set"), maskSetList)), /*#__PURE__*/_react.default.createElement(_reactBootstrap.Dropdown, null, /*#__PURE__*/_react.default.createElement(_reactBootstrap.Dropdown.Toggle, {
|
|
111
|
+
variant: "light"
|
|
112
|
+
}, nMasks, " masks selected"), /*#__PURE__*/_react.default.createElement(_reactBootstrap.Dropdown.Menu, null, /*#__PURE__*/_react.default.createElement(_reactBootstrap.Dropdown.Header, null, "Masks"), /*#__PURE__*/_react.default.createElement(_reactBootstrap.Dropdown.ItemText, {
|
|
113
|
+
key: "toggle-all"
|
|
114
|
+
}, /*#__PURE__*/_react.default.createElement(_reactBootstrap.Form.Check, {
|
|
115
|
+
type: "checkbox",
|
|
116
|
+
label: "Toggle all",
|
|
117
|
+
checked: toggleAllChecked,
|
|
118
|
+
onChange: toggleMasks
|
|
119
|
+
})), masksList)));
|
|
142
120
|
}
|
|
143
121
|
|
|
144
122
|
// @TODO: add colormap, colorbar slider
|
|
145
|
-
function PseudospatialToolbar(
|
|
146
|
-
|
|
147
|
-
|
|
148
|
-
|
|
149
|
-
|
|
150
|
-
|
|
151
|
-
children: [/*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.ButtonGroup, {
|
|
152
|
-
children: /*#__PURE__*/(0, _jsxRuntime.jsx)(MaskSet, {})
|
|
153
|
-
}), /*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.ButtonGroup, {
|
|
154
|
-
children: plotType === _constants.PSEUDOSPATIAL_PLOT_TYPES.CATEGORICAL && /*#__PURE__*/(0, _jsxRuntime.jsx)(CategoricalMode, {})
|
|
155
|
-
})]
|
|
156
|
-
});
|
|
123
|
+
function PseudospatialToolbar({
|
|
124
|
+
plotType
|
|
125
|
+
}) {
|
|
126
|
+
return /*#__PURE__*/_react.default.createElement("div", {
|
|
127
|
+
className: "cherita-pseudospatial-toolbar"
|
|
128
|
+
}, /*#__PURE__*/_react.default.createElement(_reactBootstrap.ButtonGroup, null, /*#__PURE__*/_react.default.createElement(MaskSet, null)), /*#__PURE__*/_react.default.createElement(_reactBootstrap.ButtonGroup, null, plotType === _constants.PSEUDOSPATIAL_PLOT_TYPES.CATEGORICAL && /*#__PURE__*/_react.default.createElement(CategoricalMode, null)));
|
|
157
129
|
}
|