@haniffalab/cherita-react 0.2.0-dev.2024-09-26.775b9a06 → 0.2.0-dev.2024-09-26.d9293c4c
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/App.scss +77 -8
- package/dist/components/Offcanvas/index.js +6 -2
- package/dist/components/dotplot/Dotplot.js +11 -0
- package/dist/components/heatmap/Heatmap.js +11 -0
- package/dist/components/matrixplot/Matrixplot.js +11 -0
- package/dist/components/obs-list/ObsItem.js +394 -0
- package/dist/components/obs-list/ObsList.js +116 -299
- package/dist/components/obs-list/ObsToolbar.js +76 -0
- package/dist/components/scatterplot/Legend.js +4 -3
- package/dist/components/scatterplot/Scatterplot.js +99 -39
- package/dist/components/scatterplot/Toolbox.js +3 -2
- package/dist/components/var-list/VarItem.js +313 -0
- package/dist/components/var-list/VarList.js +50 -148
- package/dist/components/violin/Violin.js +18 -1
- package/dist/constants/constants.js +2 -1
- package/dist/context/DatasetContext.js +10 -2
- package/dist/context/FilterContext.js +76 -0
- package/dist/helpers/map-helper.js +20 -15
- package/dist/index.js +7 -0
- package/dist/utils/VirtualizedList.js +69 -0
- package/dist/utils/requests.js +2 -2
- package/dist/utils/string.js +18 -0
- package/package.json +3 -2
- package/dist/components/obs-list/ObsValueList.js +0 -101
package/dist/App.scss
CHANGED
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@@ -1,6 +1,11 @@
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// Theme CSS
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$accordion-button-active-bg: #e7edf0;
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@import "bootstrap/scss/bootstrap";
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-
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input[type="checkbox"], .cursor-pointer {
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cursor: pointer;
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}
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.loading-spinner {
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@extend .bg-light;
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@@ -78,12 +83,6 @@
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height: 100%;
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}
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-
.cherita-alert {
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position: absolute;
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z-index: 10;
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bottom: 40px;
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left: 20px;
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}
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.cherita-spatial-controls {
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position: absolute;
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z-index: 10;
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@@ -110,6 +109,15 @@
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}
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}
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.cherita-toolbox-footer {
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display: flex;
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flex-direction: column;
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}
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.cherita-toolbox-footer .alert {
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width: fit-content;
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}
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.cherita-toolbox {
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order: 1;
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}
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@@ -126,7 +134,7 @@
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}
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.cherita-accordion-active .accordion-button {
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background-color:
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background-color: rgb(204, 227, 237)
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}
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.obs-value-list-check {
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@@ -187,4 +195,65 @@
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.cm-small {
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height: 15px;
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width: 15px;
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}
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.obs-distribution {
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width: 100%;
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height: 4rem;
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}
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.obs-continuous-stats {
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font-weight: lighter;
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margin: 0;
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}
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.value-count-badge {
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color: black !important;
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background-color: rgb(222, 222, 222) !important;
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}
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.value-pct-gauge-container {
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width: 1.5rem;
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height: 1.5rem;
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padding: 0.2rem;
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}
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.feature-histogram-container {
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height: 1.25rem;
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width: 5rem;
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display: flex;
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align-items: center;
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}
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.feature-histogram {
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@extend .feature-histogram-container;
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background-color: rgb(222, 222, 222);
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}
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.feature-histogram-tooltip .MuiChartsTooltip-markCell,.MuiChartsTooltip-labelCell {
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display: none;
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}
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.feature-histogram-tooltip .MuiChartsTooltip-valueCell {
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padding: 0.5rem !important;
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}
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.feature-histogram-tooltip .MuiChartsTooltip-valueCell > p {
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font-size: 0.85rem !important;
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}
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.feature-histogram-tooltip td > p {
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font-size: 0.85rem !important;
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}
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.feature-disease-info {
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font-weight: lighter;
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border-top: 1px solid var(list-group-border-color);
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border-right: 0;
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border-left: 0;
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border-bottom: 0;
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}
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.feature-disease-info table {
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margin: 0;
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}
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@@ -20,7 +20,8 @@ function _interopRequireDefault(e) { return e && e.__esModule ? e : { default: e
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function OffcanvasObs(_ref) {
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let {
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show,
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handleClose
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handleClose,
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...props
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} = _ref;
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return /*#__PURE__*/(0, _jsxRuntime.jsxs)(_Offcanvas.default, {
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show: show,
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@@ -33,7 +34,10 @@ function OffcanvasObs(_ref) {
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children: "Categories"
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})
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}), /*#__PURE__*/(0, _jsxRuntime.jsx)(_Offcanvas.default.Body, {
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className: "p-0",
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children: /*#__PURE__*/(0, _jsxRuntime.jsx)(_ObsList.ObsColsList, {
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...props
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})
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})]
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});
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}
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@@ -5,6 +5,7 @@ Object.defineProperty(exports, "__esModule", {
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});
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exports.Dotplot = Dotplot;
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var _react = _interopRequireWildcard(require("react"));
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var _lodash = _interopRequireDefault(require("lodash"));
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var _reactBootstrap = require("react-bootstrap");
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var _reactPlotly = _interopRequireDefault(require("react-plotly.js"));
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var _DatasetContext = require("../../context/DatasetContext");
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function _getRequireWildcardCache(e) { if ("function" != typeof WeakMap) return null; var r = new WeakMap(), t = new WeakMap(); return (_getRequireWildcardCache = function (e) { return e ? t : r; })(e); }
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function _interopRequireWildcard(e, r) { if (!r && e && e.__esModule) return e; if (null === e || "object" != typeof e && "function" != typeof e) return { default: e }; var t = _getRequireWildcardCache(r); if (t && t.has(e)) return t.get(e); var n = { __proto__: null }, a = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var u in e) if ("default" !== u && {}.hasOwnProperty.call(e, u)) { var i = a ? Object.getOwnPropertyDescriptor(e, u) : null; i && (i.get || i.set) ? Object.defineProperty(n, u, i) : n[u] = e[u]; } return n.default = e, t && t.set(e, n), n; }
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function Dotplot() {
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var _dataset$selectedObs, _dataset$selectedObs2, _dataset$selectedObs3;
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const ENDPOINT = "dotplot";
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const dataset = (0, _DatasetContext.useDataset)();
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const dispatch = (0, _DatasetContext.useDatasetDispatch)();
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const [params, setParams] = (0, _react.useState)({
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url: dataset.url,
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selectedObs: dataset.selectedObs,
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obsValues: !((_dataset$selectedObs = dataset.selectedObs) !== null && _dataset$selectedObs !== void 0 && _dataset$selectedObs.omit.length) ? null : _lodash.default.difference(_lodash.default.values((_dataset$selectedObs2 = dataset.selectedObs) === null || _dataset$selectedObs2 === void 0 ? void 0 : _dataset$selectedObs2.codes), (_dataset$selectedObs3 = dataset.selectedObs) === null || _dataset$selectedObs3 === void 0 ? void 0 : _dataset$selectedObs3.omit).map(c => {
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var _dataset$selectedObs4;
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return (_dataset$selectedObs4 = dataset.selectedObs) === null || _dataset$selectedObs4 === void 0 ? void 0 : _dataset$selectedObs4.codesMap[c];
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}),
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selectedMultiVar: dataset.selectedMultiVar.map(i => i.index),
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standardScale: dataset.controls.standardScale,
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meanOnlyExpressed: dataset.controls.meanOnlyExpressed,
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setHasSelections(false);
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}
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setParams(p => {
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var _dataset$selectedObs5, _dataset$selectedObs6, _dataset$selectedObs7;
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return {
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...p,
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url: dataset.url,
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selectedObs: dataset.selectedObs,
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obsValues: !((_dataset$selectedObs5 = dataset.selectedObs) !== null && _dataset$selectedObs5 !== void 0 && _dataset$selectedObs5.omit.length) ? null : _lodash.default.difference(_lodash.default.values((_dataset$selectedObs6 = dataset.selectedObs) === null || _dataset$selectedObs6 === void 0 ? void 0 : _dataset$selectedObs6.codes), (_dataset$selectedObs7 = dataset.selectedObs) === null || _dataset$selectedObs7 === void 0 ? void 0 : _dataset$selectedObs7.omit).map(c => {
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var _dataset$selectedObs8;
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return (_dataset$selectedObs8 = dataset.selectedObs) === null || _dataset$selectedObs8 === void 0 ? void 0 : _dataset$selectedObs8.codesMap[c];
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}),
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selectedMultiVar: dataset.selectedMultiVar.map(i => i.index),
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standardScale: dataset.controls.standardScale,
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meanOnlyExpressed: dataset.controls.meanOnlyExpressed,
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exports.Heatmap = Heatmap;
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var _react = _interopRequireWildcard(require("react"));
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var _lodash = _interopRequireDefault(require("lodash"));
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var _reactBootstrap = require("react-bootstrap");
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var _reactPlotly = _interopRequireDefault(require("react-plotly.js"));
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var _DatasetContext = require("../../context/DatasetContext");
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function _getRequireWildcardCache(e) { if ("function" != typeof WeakMap) return null; var r = new WeakMap(), t = new WeakMap(); return (_getRequireWildcardCache = function (e) { return e ? t : r; })(e); }
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function _interopRequireWildcard(e, r) { if (!r && e && e.__esModule) return e; if (null === e || "object" != typeof e && "function" != typeof e) return { default: e }; var t = _getRequireWildcardCache(r); if (t && t.has(e)) return t.get(e); var n = { __proto__: null }, a = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var u in e) if ("default" !== u && {}.hasOwnProperty.call(e, u)) { var i = a ? Object.getOwnPropertyDescriptor(e, u) : null; i && (i.get || i.set) ? Object.defineProperty(n, u, i) : n[u] = e[u]; } return n.default = e, t && t.set(e, n), n; }
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function Heatmap() {
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var _dataset$selectedObs, _dataset$selectedObs2, _dataset$selectedObs3;
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const ENDPOINT = "heatmap";
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const dataset = (0, _DatasetContext.useDataset)();
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const colorscale = (0, _react.useRef)(dataset.controls.colorScale);
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url: dataset.url,
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selectedObs: dataset.selectedObs,
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obsValues: !((_dataset$selectedObs = dataset.selectedObs) !== null && _dataset$selectedObs !== void 0 && _dataset$selectedObs.omit.length) ? null : _lodash.default.difference(_lodash.default.values((_dataset$selectedObs2 = dataset.selectedObs) === null || _dataset$selectedObs2 === void 0 ? void 0 : _dataset$selectedObs2.codes), (_dataset$selectedObs3 = dataset.selectedObs) === null || _dataset$selectedObs3 === void 0 ? void 0 : _dataset$selectedObs3.omit).map(c => {
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var _dataset$selectedObs4;
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return (_dataset$selectedObs4 = dataset.selectedObs) === null || _dataset$selectedObs4 === void 0 ? void 0 : _dataset$selectedObs4.codesMap[c];
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}),
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selectedMultiVar: dataset.selectedMultiVar.map(i => i.index),
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varNamesCol: dataset.varNamesCol
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});
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setHasSelections(false);
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}
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setParams(p => {
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return {
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...p,
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url: dataset.url,
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selectedObs: dataset.selectedObs,
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obsValues: !((_dataset$selectedObs5 = dataset.selectedObs) !== null && _dataset$selectedObs5 !== void 0 && _dataset$selectedObs5.omit.length) ? null : _lodash.default.difference(_lodash.default.values((_dataset$selectedObs6 = dataset.selectedObs) === null || _dataset$selectedObs6 === void 0 ? void 0 : _dataset$selectedObs6.codes), (_dataset$selectedObs7 = dataset.selectedObs) === null || _dataset$selectedObs7 === void 0 ? void 0 : _dataset$selectedObs7.omit).map(c => {
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var _dataset$selectedObs8;
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return (_dataset$selectedObs8 = dataset.selectedObs) === null || _dataset$selectedObs8 === void 0 ? void 0 : _dataset$selectedObs8.codesMap[c];
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}),
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selectedMultiVar: dataset.selectedMultiVar.map(i => i.index),
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varNamesCol: dataset.varNamesCol
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};
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exports.Matrixplot = Matrixplot;
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var _react = _interopRequireWildcard(require("react"));
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var _lodash = _interopRequireDefault(require("lodash"));
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var _reactBootstrap = require("react-bootstrap");
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var _reactPlotly = _interopRequireDefault(require("react-plotly.js"));
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var _DatasetContext = require("../../context/DatasetContext");
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function _getRequireWildcardCache(e) { if ("function" != typeof WeakMap) return null; var r = new WeakMap(), t = new WeakMap(); return (_getRequireWildcardCache = function (e) { return e ? t : r; })(e); }
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function _interopRequireWildcard(e, r) { if (!r && e && e.__esModule) return e; if (null === e || "object" != typeof e && "function" != typeof e) return { default: e }; var t = _getRequireWildcardCache(r); if (t && t.has(e)) return t.get(e); var n = { __proto__: null }, a = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var u in e) if ("default" !== u && {}.hasOwnProperty.call(e, u)) { var i = a ? Object.getOwnPropertyDescriptor(e, u) : null; i && (i.get || i.set) ? Object.defineProperty(n, u, i) : n[u] = e[u]; } return n.default = e, t && t.set(e, n), n; }
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function Matrixplot() {
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var _dataset$selectedObs, _dataset$selectedObs2, _dataset$selectedObs3;
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const ENDPOINT = "matrixplot";
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const dataset = (0, _DatasetContext.useDataset)();
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const colorscale = (0, _react.useRef)(dataset.controls.colorScale);
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const [params, setParams] = (0, _react.useState)({
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url: dataset.url,
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selectedObs: dataset.selectedObs,
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obsValues: !((_dataset$selectedObs = dataset.selectedObs) !== null && _dataset$selectedObs !== void 0 && _dataset$selectedObs.omit.length) ? null : _lodash.default.difference(_lodash.default.values((_dataset$selectedObs2 = dataset.selectedObs) === null || _dataset$selectedObs2 === void 0 ? void 0 : _dataset$selectedObs2.codes), (_dataset$selectedObs3 = dataset.selectedObs) === null || _dataset$selectedObs3 === void 0 ? void 0 : _dataset$selectedObs3.omit).map(c => {
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var _dataset$selectedObs4;
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className: "text-end",
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children: (0, _string.prettyNumerical)(obs.median)
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})]
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className: "obs-distribution",
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children: /*#__PURE__*/(0, _jsxRuntime.jsx)(_xCharts.SparkLineChart, {
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data: fetchedData.kde_values[1],
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showHighlight: true,
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showTooltip: true // throws Maximum update depth exceeded error. Documented here: https://github.com/mui/mui-x/issues/13450
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,
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margin: {
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left: 20
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},
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xAxis: {
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data: fetchedData.kde_values[0],
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valueFormatter: v => "".concat((0, _string.prettyNumerical)(v))
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},
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valueFormatter: v => "".concat((0, _string.prettyNumerical)(v)),
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slotProps: {
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popper: {
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className: "feature-histogram-tooltip"
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}
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})
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});
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}
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function ContinuousObs(_ref4) {
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let {
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obs,
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updateObs,
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toggleAll,
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toggleObs,
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toggleLabel,
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toggleSlice,
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toggleColor
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} = _ref4;
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const ENDPOINT = "obs/bins";
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const dataset = (0, _DatasetContext.useDataset)();
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const dispatch = (0, _DatasetContext.useDatasetDispatch)();
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const binnedObs = binContinuous(obs);
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const params = {
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url: dataset.url,
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obs_col: binnedObs.name,
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thresholds: binnedObs.bins.thresholds,
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nBins: binnedObs.bins.nBins
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};
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const {
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fetchedData,
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isPending,
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serverError
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} = (0, _requests.useFetch)(ENDPOINT, params, {
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refetchOnMount: false
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});
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const updatedObs = fetchedData && _lodash.default.isMatch(obs, fetchedData);
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(0, _react.useEffect)(() => {
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// after update -> re-render -> obs will already be updated
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if (!isPending && !serverError && !_lodash.default.isMatch(obs, fetchedData)) {
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updateObs({
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...binnedObs,
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...fetchedData,
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codesMap: _lodash.default.invert(fetchedData.codes)
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});
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}
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}, [binnedObs, fetchedData, isPending, obs, serverError, updateObs]);
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(0, _react.useEffect)(() => {
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var _dataset$selectedObs2;
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if (updatedObs && ((_dataset$selectedObs2 = dataset.selectedObs) === null || _dataset$selectedObs2 === void 0 ? void 0 : _dataset$selectedObs2.name) === obs.name) {
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const selectedObsData = _lodash.default.omit(dataset.selectedObs, ["omit"]);
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const obsData = _lodash.default.omit(obs, ["omit"]);
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if (!_lodash.default.isEqual(selectedObsData, obsData)) {
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// outdated selectedObs
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dispatch({
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type: "select.obs",
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obs: obs
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});
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} else if (!_lodash.default.isEqual(dataset.selectedObs.omit, obs.omit)) {
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updateObs({
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...obs,
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omit: dataset.selectedObs.omit
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});
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}
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}
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}, [dataset.selectedObs, dispatch, obs, obs.name, updateObs, updatedObs]);
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const totalCounts = _lodash.default.sum(_lodash.default.values(obs === null || obs === void 0 ? void 0 : obs.value_counts));
|
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|
+
const min = _lodash.default.min(_lodash.default.values(obs === null || obs === void 0 ? void 0 : obs.codes));
|
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|
+
const max = _lodash.default.max(_lodash.default.values(obs === null || obs === void 0 ? void 0 : obs.codes));
|
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|
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const getDataAtIndex = index => {
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return {
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value: obs.values[index],
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|
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code: obs.codes[obs.values[index]],
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value_counts: obs.value_counts[obs.values[index]],
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|
+
pct: obs.value_counts[obs.values[index]] / totalCounts * 100,
|
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364
|
+
isOmitted: _lodash.default.includes(obs.omit, obs.codes[obs.values[index]]),
|
|
365
|
+
label: getContinuousLabel(obs.codes[obs.values[index]], obs.bins.binEdges)
|
|
366
|
+
};
|
|
367
|
+
};
|
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368
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+
return /*#__PURE__*/(0, _jsxRuntime.jsxs)(_jsxRuntime.Fragment, {
|
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+
children: [isPending && /*#__PURE__*/(0, _jsxRuntime.jsx)(_LoadingIndicators.LoadingLinear, {}), !serverError && updatedObs && /*#__PURE__*/(0, _jsxRuntime.jsxs)(_jsxRuntime.Fragment, {
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+
children: [/*#__PURE__*/(0, _jsxRuntime.jsxs)(_reactBootstrap.ListGroup, {
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+
children: [/*#__PURE__*/(0, _jsxRuntime.jsx)(_reactBootstrap.ListGroup.Item, {
|
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372
|
+
children: /*#__PURE__*/(0, _jsxRuntime.jsx)(_ObsToolbar.ObsToolbar, {
|
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373
|
+
item: obs,
|
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374
|
+
onToggleAllObs: toggleAll,
|
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375
|
+
onToggleLabel: toggleLabel,
|
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376
|
+
onToggleSlice: toggleSlice,
|
|
377
|
+
onToggleColor: toggleColor
|
|
378
|
+
})
|
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379
|
+
}), /*#__PURE__*/(0, _jsxRuntime.jsx)(_VirtualizedList.VirtualizedList, {
|
|
380
|
+
getDataAtIndex: getDataAtIndex,
|
|
381
|
+
count: obs.values.length,
|
|
382
|
+
ItemComponent: CategoricalItem,
|
|
383
|
+
totalCounts: totalCounts,
|
|
384
|
+
min: min,
|
|
385
|
+
max: max,
|
|
386
|
+
onChange: toggleObs,
|
|
387
|
+
showColor: false
|
|
388
|
+
})]
|
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389
|
+
}), /*#__PURE__*/(0, _jsxRuntime.jsx)(ObsContinuousStats, {
|
|
390
|
+
obs: obs
|
|
391
|
+
})]
|
|
392
|
+
})]
|
|
393
|
+
});
|
|
394
|
+
}
|