@haniffalab/cherita-react 0.1.9 → 0.1.11
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +25 -1
- package/dist/components/{Dotplot.js → dotplot/Dotplot.js} +150 -168
- package/dist/components/{Heatmap.js → heatmap/Heatmap.js} +65 -59
- package/dist/components/matrixplot/Matrixplot.js +150 -0
- package/dist/components/obs-list/ObsList.js +130 -0
- package/dist/components/scatterplot/Scatterplot.js +258 -0
- package/dist/components/scatterplot/Toolbox.js +68 -0
- package/dist/components/{ObsList.js → var-list/VarList.js} +66 -37
- package/dist/components/violin/Violin.js +152 -0
- package/dist/constants/constants.js +44 -2
- package/dist/context/DatasetContext.js +85 -3
- package/dist/helpers/map.js +59 -0
- package/dist/helpers/zarr.js +56 -0
- package/dist/index.js +63 -6
- package/dist/utils/requests.js +53 -0
- package/package.json +24 -4
- package/dist/components/VarList.js +0 -126
|
@@ -0,0 +1,150 @@
|
|
|
1
|
+
"use strict";
|
|
2
|
+
|
|
3
|
+
function _typeof(obj) { "@babel/helpers - typeof"; return _typeof = "function" == typeof Symbol && "symbol" == typeof Symbol.iterator ? function (obj) { return typeof obj; } : function (obj) { return obj && "function" == typeof Symbol && obj.constructor === Symbol && obj !== Symbol.prototype ? "symbol" : typeof obj; }, _typeof(obj); }
|
|
4
|
+
Object.defineProperty(exports, "__esModule", {
|
|
5
|
+
value: true
|
|
6
|
+
});
|
|
7
|
+
exports.Matrixplot = Matrixplot;
|
|
8
|
+
exports.MatrixplotControls = MatrixplotControls;
|
|
9
|
+
require("bootstrap/dist/css/bootstrap.min.css");
|
|
10
|
+
var _Dropdown = _interopRequireDefault(require("react-bootstrap/Dropdown"));
|
|
11
|
+
var _react = _interopRequireWildcard(require("react"));
|
|
12
|
+
var _reactPlotly = _interopRequireDefault(require("react-plotly.js"));
|
|
13
|
+
var _lodash = _interopRequireDefault(require("lodash"));
|
|
14
|
+
var _DatasetContext = require("../../context/DatasetContext");
|
|
15
|
+
var _constants = require("../../constants/constants");
|
|
16
|
+
var _reactBootstrap = require("react-bootstrap");
|
|
17
|
+
var _requests = require("../../utils/requests");
|
|
18
|
+
function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
|
|
19
|
+
function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
|
|
20
|
+
function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; }
|
|
21
|
+
function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
|
|
22
|
+
function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { _defineProperty(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
|
|
23
|
+
function _defineProperty(obj, key, value) { key = _toPropertyKey(key); if (key in obj) { Object.defineProperty(obj, key, { value: value, enumerable: true, configurable: true, writable: true }); } else { obj[key] = value; } return obj; }
|
|
24
|
+
function _toPropertyKey(arg) { var key = _toPrimitive(arg, "string"); return _typeof(key) === "symbol" ? key : String(key); }
|
|
25
|
+
function _toPrimitive(input, hint) { if (_typeof(input) !== "object" || input === null) return input; var prim = input[Symbol.toPrimitive]; if (prim !== undefined) { var res = prim.call(input, hint || "default"); if (_typeof(res) !== "object") return res; throw new TypeError("@@toPrimitive must return a primitive value."); } return (hint === "string" ? String : Number)(input); }
|
|
26
|
+
function _slicedToArray(arr, i) { return _arrayWithHoles(arr) || _iterableToArrayLimit(arr, i) || _unsupportedIterableToArray(arr, i) || _nonIterableRest(); }
|
|
27
|
+
function _nonIterableRest() { throw new TypeError("Invalid attempt to destructure non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); }
|
|
28
|
+
function _unsupportedIterableToArray(o, minLen) { if (!o) return; if (typeof o === "string") return _arrayLikeToArray(o, minLen); var n = Object.prototype.toString.call(o).slice(8, -1); if (n === "Object" && o.constructor) n = o.constructor.name; if (n === "Map" || n === "Set") return Array.from(o); if (n === "Arguments" || /^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(n)) return _arrayLikeToArray(o, minLen); }
|
|
29
|
+
function _arrayLikeToArray(arr, len) { if (len == null || len > arr.length) len = arr.length; for (var i = 0, arr2 = new Array(len); i < len; i++) arr2[i] = arr[i]; return arr2; }
|
|
30
|
+
function _iterableToArrayLimit(arr, i) { var _i = null == arr ? null : "undefined" != typeof Symbol && arr[Symbol.iterator] || arr["@@iterator"]; if (null != _i) { var _s, _e, _x, _r, _arr = [], _n = !0, _d = !1; try { if (_x = (_i = _i.call(arr)).next, 0 === i) { if (Object(_i) !== _i) return; _n = !1; } else for (; !(_n = (_s = _x.call(_i)).done) && (_arr.push(_s.value), _arr.length !== i); _n = !0); } catch (err) { _d = !0, _e = err; } finally { try { if (!_n && null != _i.return && (_r = _i.return(), Object(_r) !== _r)) return; } finally { if (_d) throw _e; } } return _arr; } }
|
|
31
|
+
function _arrayWithHoles(arr) { if (Array.isArray(arr)) return arr; }
|
|
32
|
+
function MatrixplotControls() {
|
|
33
|
+
var dataset = (0, _DatasetContext.useDataset)();
|
|
34
|
+
var dispatch = (0, _DatasetContext.useDatasetDispatch)();
|
|
35
|
+
var colorScaleList = _constants.PLOTLY_COLORSCALES.map(function (item) {
|
|
36
|
+
return /*#__PURE__*/_react.default.createElement(_Dropdown.default.Item, {
|
|
37
|
+
key: item,
|
|
38
|
+
active: dataset.controls.colorScale === item,
|
|
39
|
+
onClick: function onClick() {
|
|
40
|
+
dispatch({
|
|
41
|
+
type: "set.controls.colorScale",
|
|
42
|
+
colorScale: item
|
|
43
|
+
});
|
|
44
|
+
}
|
|
45
|
+
}, item);
|
|
46
|
+
});
|
|
47
|
+
var standardScaleList = _constants.MATRIXPLOT_STANDARDSCALES.map(function (item) {
|
|
48
|
+
return /*#__PURE__*/_react.default.createElement(_Dropdown.default.Item, {
|
|
49
|
+
key: item.value,
|
|
50
|
+
active: dataset.controls.standardScale === item.name,
|
|
51
|
+
onClick: function onClick() {
|
|
52
|
+
dispatch({
|
|
53
|
+
type: "set.controls.standardScale",
|
|
54
|
+
standardScale: item.value
|
|
55
|
+
});
|
|
56
|
+
}
|
|
57
|
+
}, item.name);
|
|
58
|
+
});
|
|
59
|
+
return /*#__PURE__*/_react.default.createElement(_reactBootstrap.ButtonToolbar, null, /*#__PURE__*/_react.default.createElement(_reactBootstrap.ButtonGroup, null, /*#__PURE__*/_react.default.createElement(_Dropdown.default, null, /*#__PURE__*/_react.default.createElement(_Dropdown.default.Toggle, {
|
|
60
|
+
id: "dropdownColorscale",
|
|
61
|
+
variant: "light"
|
|
62
|
+
}, dataset.controls.colorScale), /*#__PURE__*/_react.default.createElement(_Dropdown.default.Menu, null, colorScaleList))), /*#__PURE__*/_react.default.createElement(_reactBootstrap.ButtonGroup, null, /*#__PURE__*/_react.default.createElement(_reactBootstrap.InputGroup, null, /*#__PURE__*/_react.default.createElement(_reactBootstrap.InputGroup.Text, null, "Standard scale"), /*#__PURE__*/_react.default.createElement(_Dropdown.default, null, /*#__PURE__*/_react.default.createElement(_Dropdown.default.Toggle, {
|
|
63
|
+
id: "dropdownStandardScale",
|
|
64
|
+
variant: "light"
|
|
65
|
+
}, dataset.controls.standardScale), /*#__PURE__*/_react.default.createElement(_Dropdown.default.Menu, null, standardScaleList)))));
|
|
66
|
+
}
|
|
67
|
+
function Matrixplot() {
|
|
68
|
+
var dataset = (0, _DatasetContext.useDataset)();
|
|
69
|
+
var colorscale = (0, _react.useRef)(dataset.controls.colorScale);
|
|
70
|
+
var _useState = (0, _react.useState)([]),
|
|
71
|
+
_useState2 = _slicedToArray(_useState, 2),
|
|
72
|
+
data = _useState2[0],
|
|
73
|
+
setData = _useState2[1];
|
|
74
|
+
var _useState3 = (0, _react.useState)({}),
|
|
75
|
+
_useState4 = _slicedToArray(_useState3, 2),
|
|
76
|
+
layout = _useState4[0],
|
|
77
|
+
setLayout = _useState4[1];
|
|
78
|
+
var _useState5 = (0, _react.useState)(false),
|
|
79
|
+
_useState6 = _slicedToArray(_useState5, 2),
|
|
80
|
+
hasSelections = _useState6[0],
|
|
81
|
+
setHasSelections = _useState6[1];
|
|
82
|
+
var updateColorscale = (0, _react.useCallback)(function (colorscale) {
|
|
83
|
+
setLayout(function (l) {
|
|
84
|
+
return _objectSpread(_objectSpread({}, l), {}, {
|
|
85
|
+
coloraxis: _objectSpread(_objectSpread({}, l.coloraxis), {}, {
|
|
86
|
+
colorscale: colorscale
|
|
87
|
+
})
|
|
88
|
+
});
|
|
89
|
+
});
|
|
90
|
+
}, []);
|
|
91
|
+
var update = (0, _react.useMemo)(function () {
|
|
92
|
+
var func = function func(abortController) {
|
|
93
|
+
if (dataset.selectedObs && dataset.selectedMultiVar.length) {
|
|
94
|
+
setHasSelections(true);
|
|
95
|
+
(0, _requests.fetchData)("matrixplot", {
|
|
96
|
+
url: dataset.url,
|
|
97
|
+
selectedObs: dataset.selectedObs,
|
|
98
|
+
selectedMultiVar: dataset.selectedMultiVar.map(function (i) {
|
|
99
|
+
return i.name;
|
|
100
|
+
}),
|
|
101
|
+
standardScale: dataset.controls.standardScale
|
|
102
|
+
}, abortController.signal).then(function (data) {
|
|
103
|
+
setData(data.data);
|
|
104
|
+
setLayout(data.layout);
|
|
105
|
+
updateColorscale(colorscale.current);
|
|
106
|
+
}).catch(function (response) {
|
|
107
|
+
if (response.name !== "AbortError") {
|
|
108
|
+
response.json().then(function (json) {
|
|
109
|
+
console.log(json.message);
|
|
110
|
+
});
|
|
111
|
+
}
|
|
112
|
+
});
|
|
113
|
+
} else {
|
|
114
|
+
setHasSelections(false);
|
|
115
|
+
}
|
|
116
|
+
};
|
|
117
|
+
// delay invoking the fetch function to avoid firing requests
|
|
118
|
+
// while dependencies might still be getting updated by the user
|
|
119
|
+
return _lodash.default.debounce(func, 500);
|
|
120
|
+
}, [dataset.url, dataset.selectedObs, dataset.selectedMultiVar, dataset.controls.standardScale, updateColorscale]);
|
|
121
|
+
(0, _react.useEffect)(function () {
|
|
122
|
+
// create an abort controller to pass into each fetch function
|
|
123
|
+
// to abort previous incompleted requests when a new request is fired
|
|
124
|
+
var abortController = new AbortController();
|
|
125
|
+
update(abortController);
|
|
126
|
+
return function () {
|
|
127
|
+
abortController.abort();
|
|
128
|
+
};
|
|
129
|
+
}, [update]);
|
|
130
|
+
(0, _react.useEffect)(function () {
|
|
131
|
+
colorscale.current = dataset.controls.colorScale;
|
|
132
|
+
updateColorscale(colorscale.current);
|
|
133
|
+
}, [dataset.controls.colorScale, updateColorscale]);
|
|
134
|
+
if (hasSelections) {
|
|
135
|
+
return /*#__PURE__*/_react.default.createElement("div", {
|
|
136
|
+
className: "cherita-matrixplot"
|
|
137
|
+
}, /*#__PURE__*/_react.default.createElement(_reactPlotly.default, {
|
|
138
|
+
data: data,
|
|
139
|
+
layout: layout,
|
|
140
|
+
useResizeHandler: true,
|
|
141
|
+
style: {
|
|
142
|
+
maxWidth: "100%",
|
|
143
|
+
maxHeight: "100%"
|
|
144
|
+
}
|
|
145
|
+
}));
|
|
146
|
+
}
|
|
147
|
+
return /*#__PURE__*/_react.default.createElement("div", {
|
|
148
|
+
className: "cherita-matrixplot"
|
|
149
|
+
}, /*#__PURE__*/_react.default.createElement("p", null, "Select OBS and VAR"));
|
|
150
|
+
}
|
|
@@ -0,0 +1,130 @@
|
|
|
1
|
+
"use strict";
|
|
2
|
+
|
|
3
|
+
function _typeof(obj) { "@babel/helpers - typeof"; return _typeof = "function" == typeof Symbol && "symbol" == typeof Symbol.iterator ? function (obj) { return typeof obj; } : function (obj) { return obj && "function" == typeof Symbol && obj.constructor === Symbol && obj !== Symbol.prototype ? "symbol" : typeof obj; }, _typeof(obj); }
|
|
4
|
+
Object.defineProperty(exports, "__esModule", {
|
|
5
|
+
value: true
|
|
6
|
+
});
|
|
7
|
+
exports.ObsColsList = ObsColsList;
|
|
8
|
+
require("bootstrap/dist/css/bootstrap.min.css");
|
|
9
|
+
require("bootstrap/dist/js/bootstrap.bundle.min.js");
|
|
10
|
+
var _lodash = _interopRequireDefault(require("lodash"));
|
|
11
|
+
var _react = _interopRequireWildcard(require("react"));
|
|
12
|
+
var _DatasetContext = require("../../context/DatasetContext");
|
|
13
|
+
var _requests = require("../../utils/requests");
|
|
14
|
+
var _reactBootstrap = require("react-bootstrap");
|
|
15
|
+
function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
|
|
16
|
+
function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
|
|
17
|
+
function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; }
|
|
18
|
+
function _slicedToArray(arr, i) { return _arrayWithHoles(arr) || _iterableToArrayLimit(arr, i) || _unsupportedIterableToArray(arr, i) || _nonIterableRest(); }
|
|
19
|
+
function _nonIterableRest() { throw new TypeError("Invalid attempt to destructure non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); }
|
|
20
|
+
function _unsupportedIterableToArray(o, minLen) { if (!o) return; if (typeof o === "string") return _arrayLikeToArray(o, minLen); var n = Object.prototype.toString.call(o).slice(8, -1); if (n === "Object" && o.constructor) n = o.constructor.name; if (n === "Map" || n === "Set") return Array.from(o); if (n === "Arguments" || /^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(n)) return _arrayLikeToArray(o, minLen); }
|
|
21
|
+
function _arrayLikeToArray(arr, len) { if (len == null || len > arr.length) len = arr.length; for (var i = 0, arr2 = new Array(len); i < len; i++) arr2[i] = arr[i]; return arr2; }
|
|
22
|
+
function _iterableToArrayLimit(arr, i) { var _i = null == arr ? null : "undefined" != typeof Symbol && arr[Symbol.iterator] || arr["@@iterator"]; if (null != _i) { var _s, _e, _x, _r, _arr = [], _n = !0, _d = !1; try { if (_x = (_i = _i.call(arr)).next, 0 === i) { if (Object(_i) !== _i) return; _n = !1; } else for (; !(_n = (_s = _x.call(_i)).done) && (_arr.push(_s.value), _arr.length !== i); _n = !0); } catch (err) { _d = !0, _e = err; } finally { try { if (!_n && null != _i.return && (_r = _i.return(), Object(_r) !== _r)) return; } finally { if (_d) throw _e; } } return _arr; } }
|
|
23
|
+
function _arrayWithHoles(arr) { if (Array.isArray(arr)) return arr; }
|
|
24
|
+
var N_BINS = 5;
|
|
25
|
+
function binContinuous(data) {
|
|
26
|
+
var nBins = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : N_BINS;
|
|
27
|
+
var binSize = (data.max - data.min) * (1 / nBins);
|
|
28
|
+
var thresholds = _lodash.default.range(nBins + 1).map(function (b) {
|
|
29
|
+
return data.min + binSize * b;
|
|
30
|
+
});
|
|
31
|
+
data.bins = {
|
|
32
|
+
nBins: nBins,
|
|
33
|
+
binSize: binSize,
|
|
34
|
+
thresholds: thresholds
|
|
35
|
+
};
|
|
36
|
+
return data;
|
|
37
|
+
}
|
|
38
|
+
function binDiscrete(data) {
|
|
39
|
+
var nBins = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : N_BINS;
|
|
40
|
+
var binSize = _lodash.default.round(data.n_values * (1 / nBins));
|
|
41
|
+
data.bins = {
|
|
42
|
+
nBins: nBins,
|
|
43
|
+
binSize: binSize
|
|
44
|
+
};
|
|
45
|
+
return data;
|
|
46
|
+
}
|
|
47
|
+
function ObsColsList() {
|
|
48
|
+
var dataset = (0, _DatasetContext.useDataset)();
|
|
49
|
+
var dispatch = (0, _DatasetContext.useDatasetDispatch)();
|
|
50
|
+
var _useState = (0, _react.useState)([]),
|
|
51
|
+
_useState2 = _slicedToArray(_useState, 2),
|
|
52
|
+
obsColsList = _useState2[0],
|
|
53
|
+
setObsColsList = _useState2[1];
|
|
54
|
+
var _useState3 = (0, _react.useState)(null),
|
|
55
|
+
_useState4 = _slicedToArray(_useState3, 2),
|
|
56
|
+
active = _useState4[0],
|
|
57
|
+
setActive = _useState4[1];
|
|
58
|
+
(0, _react.useEffect)(function () {
|
|
59
|
+
(0, _requests.fetchData)("obs/cols", {
|
|
60
|
+
url: dataset.url
|
|
61
|
+
}).then(function (data) {
|
|
62
|
+
setObsColsList(data.map(function (d) {
|
|
63
|
+
if (d.type === "continuous") {
|
|
64
|
+
d = binContinuous(d);
|
|
65
|
+
}
|
|
66
|
+
if (d.type === "discrete") {
|
|
67
|
+
d = binDiscrete(d);
|
|
68
|
+
}
|
|
69
|
+
return d;
|
|
70
|
+
}));
|
|
71
|
+
}).catch(function (response) {
|
|
72
|
+
response.json().then(function (json) {
|
|
73
|
+
console.log(json.message);
|
|
74
|
+
});
|
|
75
|
+
});
|
|
76
|
+
}, [dataset.url]);
|
|
77
|
+
(0, _react.useEffect)(function () {
|
|
78
|
+
if (dataset.selectedObs) {
|
|
79
|
+
setActive(dataset.selectedObs.name);
|
|
80
|
+
}
|
|
81
|
+
}, [dataset.selectedObs]);
|
|
82
|
+
function categoricalList(item) {
|
|
83
|
+
return /*#__PURE__*/_react.default.createElement(_reactBootstrap.Accordion.Item, {
|
|
84
|
+
key: item.name,
|
|
85
|
+
eventKey: item.name
|
|
86
|
+
}, /*#__PURE__*/_react.default.createElement(_reactBootstrap.Accordion.Header, null, item.name), /*#__PURE__*/_react.default.createElement(_reactBootstrap.Accordion.Body, null, /*#__PURE__*/_react.default.createElement(_reactBootstrap.ListGroup, null, item.values.map(function (val) {
|
|
87
|
+
return /*#__PURE__*/_react.default.createElement(_reactBootstrap.ListGroup.Item, {
|
|
88
|
+
key: val
|
|
89
|
+
}, val);
|
|
90
|
+
}))));
|
|
91
|
+
}
|
|
92
|
+
function continuousList(item) {
|
|
93
|
+
return /*#__PURE__*/_react.default.createElement(_reactBootstrap.Accordion.Item, {
|
|
94
|
+
key: item.name,
|
|
95
|
+
eventKey: item.name
|
|
96
|
+
}, /*#__PURE__*/_react.default.createElement(_reactBootstrap.Accordion.Header, null, item.name), /*#__PURE__*/_react.default.createElement(_reactBootstrap.Accordion.Body, null, /*#__PURE__*/_react.default.createElement("p", null, "Min: ", item.min), /*#__PURE__*/_react.default.createElement("p", null, "Max: ", item.max), /*#__PURE__*/_react.default.createElement("p", null, "Mean: ", item.mean), /*#__PURE__*/_react.default.createElement("p", null, "Median: ", item.median), /*#__PURE__*/_react.default.createElement("p", null, "NBins: ", item.bins.nBins)));
|
|
97
|
+
}
|
|
98
|
+
function otherList(item) {
|
|
99
|
+
return /*#__PURE__*/_react.default.createElement(_reactBootstrap.Accordion.Item, {
|
|
100
|
+
key: item.name,
|
|
101
|
+
eventKey: item.name
|
|
102
|
+
}, /*#__PURE__*/_react.default.createElement(_reactBootstrap.Accordion.Header, null, item.name), /*#__PURE__*/_react.default.createElement(_reactBootstrap.Accordion.Body, null, item.type));
|
|
103
|
+
}
|
|
104
|
+
var obsList = (0, _react.useMemo)(function () {
|
|
105
|
+
return obsColsList.map(function (item) {
|
|
106
|
+
if (item.type === "categorical") {
|
|
107
|
+
return categoricalList(item);
|
|
108
|
+
} else if (item.type === "continuous") {
|
|
109
|
+
return continuousList(item);
|
|
110
|
+
} else {
|
|
111
|
+
return otherList(item);
|
|
112
|
+
}
|
|
113
|
+
});
|
|
114
|
+
}, [obsColsList]);
|
|
115
|
+
return /*#__PURE__*/_react.default.createElement("div", {
|
|
116
|
+
className: ""
|
|
117
|
+
}, /*#__PURE__*/_react.default.createElement("div", {
|
|
118
|
+
className: "list-group overflow-auto"
|
|
119
|
+
}, /*#__PURE__*/_react.default.createElement(_reactBootstrap.Accordion, {
|
|
120
|
+
activeKey: active,
|
|
121
|
+
onSelect: function onSelect(key) {
|
|
122
|
+
dispatch({
|
|
123
|
+
type: "obsSelected",
|
|
124
|
+
obs: obsColsList.find(function (obs) {
|
|
125
|
+
return obs.name === key;
|
|
126
|
+
})
|
|
127
|
+
});
|
|
128
|
+
}
|
|
129
|
+
}, obsList)));
|
|
130
|
+
}
|
|
@@ -0,0 +1,258 @@
|
|
|
1
|
+
"use strict";
|
|
2
|
+
|
|
3
|
+
function _typeof(obj) { "@babel/helpers - typeof"; return _typeof = "function" == typeof Symbol && "symbol" == typeof Symbol.iterator ? function (obj) { return typeof obj; } : function (obj) { return obj && "function" == typeof Symbol && obj.constructor === Symbol && obj !== Symbol.prototype ? "symbol" : typeof obj; }, _typeof(obj); }
|
|
4
|
+
Object.defineProperty(exports, "__esModule", {
|
|
5
|
+
value: true
|
|
6
|
+
});
|
|
7
|
+
exports.Scatterplot = Scatterplot;
|
|
8
|
+
exports.ScatterplotControls = ScatterplotControls;
|
|
9
|
+
require("bootstrap/dist/css/bootstrap.min.css");
|
|
10
|
+
var _Dropdown = _interopRequireDefault(require("react-bootstrap/Dropdown"));
|
|
11
|
+
var _react = require("react");
|
|
12
|
+
var _lodash = _interopRequireDefault(require("lodash"));
|
|
13
|
+
var _chromaJs = _interopRequireDefault(require("chroma-js"));
|
|
14
|
+
var _react2 = _interopRequireDefault(require("@deck.gl/react"));
|
|
15
|
+
var _layers = require("@deck.gl/layers");
|
|
16
|
+
var _DatasetContext = require("../../context/DatasetContext");
|
|
17
|
+
var _constants = require("../../constants/constants");
|
|
18
|
+
var _map = require("../../helpers/map");
|
|
19
|
+
var _zarr = require("../../helpers/zarr");
|
|
20
|
+
var _layers2 = require("@nebula.gl/layers");
|
|
21
|
+
var _editModes = require("@nebula.gl/edit-modes");
|
|
22
|
+
var _editor = require("@nebula.gl/editor");
|
|
23
|
+
var _Toolbox = require("./Toolbox");
|
|
24
|
+
function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; }
|
|
25
|
+
function _regeneratorRuntime() { "use strict"; /*! regenerator-runtime -- Copyright (c) 2014-present, Facebook, Inc. -- license (MIT): https://github.com/facebook/regenerator/blob/main/LICENSE */ _regeneratorRuntime = function _regeneratorRuntime() { return exports; }; var exports = {}, Op = Object.prototype, hasOwn = Op.hasOwnProperty, defineProperty = Object.defineProperty || function (obj, key, desc) { obj[key] = desc.value; }, $Symbol = "function" == typeof Symbol ? Symbol : {}, iteratorSymbol = $Symbol.iterator || "@@iterator", asyncIteratorSymbol = $Symbol.asyncIterator || "@@asyncIterator", toStringTagSymbol = $Symbol.toStringTag || "@@toStringTag"; function define(obj, key, value) { return Object.defineProperty(obj, key, { value: value, enumerable: !0, configurable: !0, writable: !0 }), obj[key]; } try { define({}, ""); } catch (err) { define = function define(obj, key, value) { return obj[key] = value; }; } function wrap(innerFn, outerFn, self, tryLocsList) { var protoGenerator = outerFn && outerFn.prototype instanceof Generator ? outerFn : Generator, generator = Object.create(protoGenerator.prototype), context = new Context(tryLocsList || []); return defineProperty(generator, "_invoke", { value: makeInvokeMethod(innerFn, self, context) }), generator; } function tryCatch(fn, obj, arg) { try { return { type: "normal", arg: fn.call(obj, arg) }; } catch (err) { return { type: "throw", arg: err }; } } exports.wrap = wrap; var ContinueSentinel = {}; function Generator() {} function GeneratorFunction() {} function GeneratorFunctionPrototype() {} var IteratorPrototype = {}; define(IteratorPrototype, iteratorSymbol, function () { return this; }); var getProto = Object.getPrototypeOf, NativeIteratorPrototype = getProto && getProto(getProto(values([]))); NativeIteratorPrototype && NativeIteratorPrototype !== Op && hasOwn.call(NativeIteratorPrototype, iteratorSymbol) && (IteratorPrototype = NativeIteratorPrototype); var Gp = GeneratorFunctionPrototype.prototype = Generator.prototype = Object.create(IteratorPrototype); function defineIteratorMethods(prototype) { ["next", "throw", "return"].forEach(function (method) { define(prototype, method, function (arg) { return this._invoke(method, arg); }); }); } function AsyncIterator(generator, PromiseImpl) { function invoke(method, arg, resolve, reject) { var record = tryCatch(generator[method], generator, arg); if ("throw" !== record.type) { var result = record.arg, value = result.value; return value && "object" == _typeof(value) && hasOwn.call(value, "__await") ? PromiseImpl.resolve(value.__await).then(function (value) { invoke("next", value, resolve, reject); }, function (err) { invoke("throw", err, resolve, reject); }) : PromiseImpl.resolve(value).then(function (unwrapped) { result.value = unwrapped, resolve(result); }, function (error) { return invoke("throw", error, resolve, reject); }); } reject(record.arg); } var previousPromise; defineProperty(this, "_invoke", { value: function value(method, arg) { function callInvokeWithMethodAndArg() { return new PromiseImpl(function (resolve, reject) { invoke(method, arg, resolve, reject); }); } return previousPromise = previousPromise ? previousPromise.then(callInvokeWithMethodAndArg, callInvokeWithMethodAndArg) : callInvokeWithMethodAndArg(); } }); } function makeInvokeMethod(innerFn, self, context) { var state = "suspendedStart"; return function (method, arg) { if ("executing" === state) throw new Error("Generator is already running"); if ("completed" === state) { if ("throw" === method) throw arg; return doneResult(); } for (context.method = method, context.arg = arg;;) { var delegate = context.delegate; if (delegate) { var delegateResult = maybeInvokeDelegate(delegate, context); if (delegateResult) { if (delegateResult === ContinueSentinel) continue; return delegateResult; } } if ("next" === context.method) context.sent = context._sent = context.arg;else if ("throw" === context.method) { if ("suspendedStart" === state) throw state = "completed", context.arg; context.dispatchException(context.arg); } else "return" === context.method && context.abrupt("return", context.arg); state = "executing"; var record = tryCatch(innerFn, self, context); if ("normal" === record.type) { if (state = context.done ? "completed" : "suspendedYield", record.arg === ContinueSentinel) continue; return { value: record.arg, done: context.done }; } "throw" === record.type && (state = "completed", context.method = "throw", context.arg = record.arg); } }; } function maybeInvokeDelegate(delegate, context) { var methodName = context.method, method = delegate.iterator[methodName]; if (undefined === method) return context.delegate = null, "throw" === methodName && delegate.iterator.return && (context.method = "return", context.arg = undefined, maybeInvokeDelegate(delegate, context), "throw" === context.method) || "return" !== methodName && (context.method = "throw", context.arg = new TypeError("The iterator does not provide a '" + methodName + "' method")), ContinueSentinel; var record = tryCatch(method, delegate.iterator, context.arg); if ("throw" === record.type) return context.method = "throw", context.arg = record.arg, context.delegate = null, ContinueSentinel; var info = record.arg; return info ? info.done ? (context[delegate.resultName] = info.value, context.next = delegate.nextLoc, "return" !== context.method && (context.method = "next", context.arg = undefined), context.delegate = null, ContinueSentinel) : info : (context.method = "throw", context.arg = new TypeError("iterator result is not an object"), context.delegate = null, ContinueSentinel); } function pushTryEntry(locs) { var entry = { tryLoc: locs[0] }; 1 in locs && (entry.catchLoc = locs[1]), 2 in locs && (entry.finallyLoc = locs[2], entry.afterLoc = locs[3]), this.tryEntries.push(entry); } function resetTryEntry(entry) { var record = entry.completion || {}; record.type = "normal", delete record.arg, entry.completion = record; } function Context(tryLocsList) { this.tryEntries = [{ tryLoc: "root" }], tryLocsList.forEach(pushTryEntry, this), this.reset(!0); } function values(iterable) { if (iterable) { var iteratorMethod = iterable[iteratorSymbol]; if (iteratorMethod) return iteratorMethod.call(iterable); if ("function" == typeof iterable.next) return iterable; if (!isNaN(iterable.length)) { var i = -1, next = function next() { for (; ++i < iterable.length;) if (hasOwn.call(iterable, i)) return next.value = iterable[i], next.done = !1, next; return next.value = undefined, next.done = !0, next; }; return next.next = next; } } return { next: doneResult }; } function doneResult() { return { value: undefined, done: !0 }; } return GeneratorFunction.prototype = GeneratorFunctionPrototype, defineProperty(Gp, "constructor", { value: GeneratorFunctionPrototype, configurable: !0 }), defineProperty(GeneratorFunctionPrototype, "constructor", { value: GeneratorFunction, configurable: !0 }), GeneratorFunction.displayName = define(GeneratorFunctionPrototype, toStringTagSymbol, "GeneratorFunction"), exports.isGeneratorFunction = function (genFun) { var ctor = "function" == typeof genFun && genFun.constructor; return !!ctor && (ctor === GeneratorFunction || "GeneratorFunction" === (ctor.displayName || ctor.name)); }, exports.mark = function (genFun) { return Object.setPrototypeOf ? Object.setPrototypeOf(genFun, GeneratorFunctionPrototype) : (genFun.__proto__ = GeneratorFunctionPrototype, define(genFun, toStringTagSymbol, "GeneratorFunction")), genFun.prototype = Object.create(Gp), genFun; }, exports.awrap = function (arg) { return { __await: arg }; }, defineIteratorMethods(AsyncIterator.prototype), define(AsyncIterator.prototype, asyncIteratorSymbol, function () { return this; }), exports.AsyncIterator = AsyncIterator, exports.async = function (innerFn, outerFn, self, tryLocsList, PromiseImpl) { void 0 === PromiseImpl && (PromiseImpl = Promise); var iter = new AsyncIterator(wrap(innerFn, outerFn, self, tryLocsList), PromiseImpl); return exports.isGeneratorFunction(outerFn) ? iter : iter.next().then(function (result) { return result.done ? result.value : iter.next(); }); }, defineIteratorMethods(Gp), define(Gp, toStringTagSymbol, "Generator"), define(Gp, iteratorSymbol, function () { return this; }), define(Gp, "toString", function () { return "[object Generator]"; }), exports.keys = function (val) { var object = Object(val), keys = []; for (var key in object) keys.push(key); return keys.reverse(), function next() { for (; keys.length;) { var key = keys.pop(); if (key in object) return next.value = key, next.done = !1, next; } return next.done = !0, next; }; }, exports.values = values, Context.prototype = { constructor: Context, reset: function reset(skipTempReset) { if (this.prev = 0, this.next = 0, this.sent = this._sent = undefined, this.done = !1, this.delegate = null, this.method = "next", this.arg = undefined, this.tryEntries.forEach(resetTryEntry), !skipTempReset) for (var name in this) "t" === name.charAt(0) && hasOwn.call(this, name) && !isNaN(+name.slice(1)) && (this[name] = undefined); }, stop: function stop() { this.done = !0; var rootRecord = this.tryEntries[0].completion; if ("throw" === rootRecord.type) throw rootRecord.arg; return this.rval; }, dispatchException: function dispatchException(exception) { if (this.done) throw exception; var context = this; function handle(loc, caught) { return record.type = "throw", record.arg = exception, context.next = loc, caught && (context.method = "next", context.arg = undefined), !!caught; } for (var i = this.tryEntries.length - 1; i >= 0; --i) { var entry = this.tryEntries[i], record = entry.completion; if ("root" === entry.tryLoc) return handle("end"); if (entry.tryLoc <= this.prev) { var hasCatch = hasOwn.call(entry, "catchLoc"), hasFinally = hasOwn.call(entry, "finallyLoc"); if (hasCatch && hasFinally) { if (this.prev < entry.catchLoc) return handle(entry.catchLoc, !0); if (this.prev < entry.finallyLoc) return handle(entry.finallyLoc); } else if (hasCatch) { if (this.prev < entry.catchLoc) return handle(entry.catchLoc, !0); } else { if (!hasFinally) throw new Error("try statement without catch or finally"); if (this.prev < entry.finallyLoc) return handle(entry.finallyLoc); } } } }, abrupt: function abrupt(type, arg) { for (var i = this.tryEntries.length - 1; i >= 0; --i) { var entry = this.tryEntries[i]; if (entry.tryLoc <= this.prev && hasOwn.call(entry, "finallyLoc") && this.prev < entry.finallyLoc) { var finallyEntry = entry; break; } } finallyEntry && ("break" === type || "continue" === type) && finallyEntry.tryLoc <= arg && arg <= finallyEntry.finallyLoc && (finallyEntry = null); var record = finallyEntry ? finallyEntry.completion : {}; return record.type = type, record.arg = arg, finallyEntry ? (this.method = "next", this.next = finallyEntry.finallyLoc, ContinueSentinel) : this.complete(record); }, complete: function complete(record, afterLoc) { if ("throw" === record.type) throw record.arg; return "break" === record.type || "continue" === record.type ? this.next = record.arg : "return" === record.type ? (this.rval = this.arg = record.arg, this.method = "return", this.next = "end") : "normal" === record.type && afterLoc && (this.next = afterLoc), ContinueSentinel; }, finish: function finish(finallyLoc) { for (var i = this.tryEntries.length - 1; i >= 0; --i) { var entry = this.tryEntries[i]; if (entry.finallyLoc === finallyLoc) return this.complete(entry.completion, entry.afterLoc), resetTryEntry(entry), ContinueSentinel; } }, catch: function _catch(tryLoc) { for (var i = this.tryEntries.length - 1; i >= 0; --i) { var entry = this.tryEntries[i]; if (entry.tryLoc === tryLoc) { var record = entry.completion; if ("throw" === record.type) { var thrown = record.arg; resetTryEntry(entry); } return thrown; } } throw new Error("illegal catch attempt"); }, delegateYield: function delegateYield(iterable, resultName, nextLoc) { return this.delegate = { iterator: values(iterable), resultName: resultName, nextLoc: nextLoc }, "next" === this.method && (this.arg = undefined), ContinueSentinel; } }, exports; }
|
|
26
|
+
function asyncGeneratorStep(gen, resolve, reject, _next, _throw, key, arg) { try { var info = gen[key](arg); var value = info.value; } catch (error) { reject(error); return; } if (info.done) { resolve(value); } else { Promise.resolve(value).then(_next, _throw); } }
|
|
27
|
+
function _asyncToGenerator(fn) { return function () { var self = this, args = arguments; return new Promise(function (resolve, reject) { var gen = fn.apply(self, args); function _next(value) { asyncGeneratorStep(gen, resolve, reject, _next, _throw, "next", value); } function _throw(err) { asyncGeneratorStep(gen, resolve, reject, _next, _throw, "throw", err); } _next(undefined); }); }; }
|
|
28
|
+
function _slicedToArray(arr, i) { return _arrayWithHoles(arr) || _iterableToArrayLimit(arr, i) || _unsupportedIterableToArray(arr, i) || _nonIterableRest(); }
|
|
29
|
+
function _nonIterableRest() { throw new TypeError("Invalid attempt to destructure non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); }
|
|
30
|
+
function _unsupportedIterableToArray(o, minLen) { if (!o) return; if (typeof o === "string") return _arrayLikeToArray(o, minLen); var n = Object.prototype.toString.call(o).slice(8, -1); if (n === "Object" && o.constructor) n = o.constructor.name; if (n === "Map" || n === "Set") return Array.from(o); if (n === "Arguments" || /^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(n)) return _arrayLikeToArray(o, minLen); }
|
|
31
|
+
function _arrayLikeToArray(arr, len) { if (len == null || len > arr.length) len = arr.length; for (var i = 0, arr2 = new Array(len); i < len; i++) arr2[i] = arr[i]; return arr2; }
|
|
32
|
+
function _iterableToArrayLimit(arr, i) { var _i = null == arr ? null : "undefined" != typeof Symbol && arr[Symbol.iterator] || arr["@@iterator"]; if (null != _i) { var _s, _e, _x, _r, _arr = [], _n = !0, _d = !1; try { if (_x = (_i = _i.call(arr)).next, 0 === i) { if (Object(_i) !== _i) return; _n = !1; } else for (; !(_n = (_s = _x.call(_i)).done) && (_arr.push(_s.value), _arr.length !== i); _n = !0); } catch (err) { _d = !0, _e = err; } finally { try { if (!_n && null != _i.return && (_r = _i.return(), Object(_r) !== _r)) return; } finally { if (_d) throw _e; } } return _arr; } }
|
|
33
|
+
function _arrayWithHoles(arr) { if (Array.isArray(arr)) return arr; }
|
|
34
|
+
window.deck.log.level = 1;
|
|
35
|
+
function ScatterplotControls() {
|
|
36
|
+
var dataset = (0, _DatasetContext.useDataset)();
|
|
37
|
+
var dispatch = (0, _DatasetContext.useDatasetDispatch)();
|
|
38
|
+
var _useState = (0, _react.useState)(dataset.embedding),
|
|
39
|
+
_useState2 = _slicedToArray(_useState, 2),
|
|
40
|
+
active = _useState2[0],
|
|
41
|
+
setActive = _useState2[1];
|
|
42
|
+
(0, _react.useEffect)(function () {
|
|
43
|
+
setActive(dataset.embedding);
|
|
44
|
+
}, [dataset.embedding]);
|
|
45
|
+
var colormapList = _constants.EMBEDDINGS.map(function (item) {
|
|
46
|
+
return /*#__PURE__*/_react.React.createElement(_Dropdown.default.Item, {
|
|
47
|
+
key: item,
|
|
48
|
+
active: active === item,
|
|
49
|
+
onClick: function onClick() {
|
|
50
|
+
setActive(item);
|
|
51
|
+
dispatch({
|
|
52
|
+
type: "embeddingSelected",
|
|
53
|
+
embedding: item
|
|
54
|
+
});
|
|
55
|
+
}
|
|
56
|
+
}, item);
|
|
57
|
+
});
|
|
58
|
+
return /*#__PURE__*/_react.React.createElement(_Dropdown.default, null, /*#__PURE__*/_react.React.createElement(_Dropdown.default.Toggle, {
|
|
59
|
+
id: "dropdownEmbedding",
|
|
60
|
+
variant: "light"
|
|
61
|
+
}, dataset.embedding), /*#__PURE__*/_react.React.createElement(_Dropdown.default.Menu, null, colormapList));
|
|
62
|
+
}
|
|
63
|
+
function Scatterplot(_ref) {
|
|
64
|
+
var _ref$radius = _ref.radius,
|
|
65
|
+
radius = _ref$radius === void 0 ? 30 : _ref$radius;
|
|
66
|
+
var dataset = (0, _DatasetContext.useDataset)();
|
|
67
|
+
var _useState3 = (0, _react.useState)({
|
|
68
|
+
type: "FeatureCollection",
|
|
69
|
+
features: []
|
|
70
|
+
}),
|
|
71
|
+
_useState4 = _slicedToArray(_useState3, 2),
|
|
72
|
+
features = _useState4[0],
|
|
73
|
+
setFeatures = _useState4[1];
|
|
74
|
+
var _useState5 = (0, _react.useState)(function () {
|
|
75
|
+
return _editModes.DrawPolygonByDraggingMode;
|
|
76
|
+
}),
|
|
77
|
+
_useState6 = _slicedToArray(_useState5, 2),
|
|
78
|
+
mode = _useState6[0],
|
|
79
|
+
setMode = _useState6[1];
|
|
80
|
+
var _useState7 = (0, _react.useState)({}),
|
|
81
|
+
_useState8 = _slicedToArray(_useState7, 2),
|
|
82
|
+
modeConfig = _useState8[0],
|
|
83
|
+
setModeConfig = _useState8[1];
|
|
84
|
+
var _useState9 = (0, _react.useState)([]),
|
|
85
|
+
_useState10 = _slicedToArray(_useState9, 2),
|
|
86
|
+
selectedFeatureIndexes = _useState10[0],
|
|
87
|
+
setSelectedFeatureIndexes = _useState10[1];
|
|
88
|
+
var _useState11 = (0, _react.useState)([]),
|
|
89
|
+
_useState12 = _slicedToArray(_useState11, 2),
|
|
90
|
+
data = _useState12[0],
|
|
91
|
+
setData = _useState12[1];
|
|
92
|
+
var _useState13 = (0, _react.useState)([]),
|
|
93
|
+
_useState14 = _slicedToArray(_useState13, 2),
|
|
94
|
+
position = _useState14[0],
|
|
95
|
+
setPosition = _useState14[1];
|
|
96
|
+
var _useState15 = (0, _react.useState)([]),
|
|
97
|
+
_useState16 = _slicedToArray(_useState15, 2),
|
|
98
|
+
values = _useState16[0],
|
|
99
|
+
setValues = _useState16[1];
|
|
100
|
+
var _useState17 = (0, _react.useState)({
|
|
101
|
+
longitude: 0,
|
|
102
|
+
latitude: 0,
|
|
103
|
+
zoom: 0,
|
|
104
|
+
maxZoom: 16,
|
|
105
|
+
pitch: 0,
|
|
106
|
+
bearing: 0
|
|
107
|
+
}),
|
|
108
|
+
_useState18 = _slicedToArray(_useState17, 2),
|
|
109
|
+
viewport = _useState18[0],
|
|
110
|
+
setViewport = _useState18[1];
|
|
111
|
+
(0, _react.useEffect)(function () {
|
|
112
|
+
setData(function (prevState, props) {
|
|
113
|
+
var colorScale = _chromaJs.default.scale(["yellow", "008ae5"]).domain([_lodash.default.min(values), _lodash.default.max(values)]);
|
|
114
|
+
var data = position.map(function (e, i) {
|
|
115
|
+
return {
|
|
116
|
+
index: i,
|
|
117
|
+
position: [position[i][0], position[i][1]],
|
|
118
|
+
value: values[i],
|
|
119
|
+
color: colorScale(values[i]).rgb()
|
|
120
|
+
};
|
|
121
|
+
});
|
|
122
|
+
return data;
|
|
123
|
+
});
|
|
124
|
+
}, [position, values]);
|
|
125
|
+
(0, _react.useEffect)(function () {
|
|
126
|
+
if (dataset.embedding) {
|
|
127
|
+
var helper = new _map.MapHelper();
|
|
128
|
+
var zarrHelper = new _zarr.ZarrHelper();
|
|
129
|
+
var fetchObsm = /*#__PURE__*/function () {
|
|
130
|
+
var _ref2 = _asyncToGenerator( /*#__PURE__*/_regeneratorRuntime().mark(function _callee() {
|
|
131
|
+
var z;
|
|
132
|
+
return _regeneratorRuntime().wrap(function _callee$(_context) {
|
|
133
|
+
while (1) switch (_context.prev = _context.next) {
|
|
134
|
+
case 0:
|
|
135
|
+
_context.next = 2;
|
|
136
|
+
return zarrHelper.open(dataset.url, "obsm/" + dataset.embedding);
|
|
137
|
+
case 2:
|
|
138
|
+
z = _context.sent;
|
|
139
|
+
_context.next = 5;
|
|
140
|
+
return z.get(null, _zarr.GET_OPTIONS).then(function (result) {
|
|
141
|
+
var _helper$fitBounds = helper.fitBounds(result.data),
|
|
142
|
+
latitude = _helper$fitBounds.latitude,
|
|
143
|
+
longitude = _helper$fitBounds.longitude,
|
|
144
|
+
zoom = _helper$fitBounds.zoom;
|
|
145
|
+
setViewport({
|
|
146
|
+
longitude: latitude,
|
|
147
|
+
latitude: longitude,
|
|
148
|
+
zoom: zoom,
|
|
149
|
+
maxZoom: 16,
|
|
150
|
+
pitch: 0,
|
|
151
|
+
bearing: 0
|
|
152
|
+
});
|
|
153
|
+
setPosition(result.data);
|
|
154
|
+
});
|
|
155
|
+
case 5:
|
|
156
|
+
case "end":
|
|
157
|
+
return _context.stop();
|
|
158
|
+
}
|
|
159
|
+
}, _callee);
|
|
160
|
+
}));
|
|
161
|
+
return function fetchObsm() {
|
|
162
|
+
return _ref2.apply(this, arguments);
|
|
163
|
+
};
|
|
164
|
+
}();
|
|
165
|
+
fetchObsm().catch(console.error);
|
|
166
|
+
}
|
|
167
|
+
}, [dataset.url, dataset.embedding]);
|
|
168
|
+
(0, _react.useEffect)(function () {
|
|
169
|
+
if (dataset.selectedVar) {
|
|
170
|
+
var zarrHelper = new _zarr.ZarrHelper();
|
|
171
|
+
var fetchData = /*#__PURE__*/function () {
|
|
172
|
+
var _ref3 = _asyncToGenerator( /*#__PURE__*/_regeneratorRuntime().mark(function _callee2() {
|
|
173
|
+
var z;
|
|
174
|
+
return _regeneratorRuntime().wrap(function _callee2$(_context2) {
|
|
175
|
+
while (1) switch (_context2.prev = _context2.next) {
|
|
176
|
+
case 0:
|
|
177
|
+
_context2.next = 2;
|
|
178
|
+
return zarrHelper.open(dataset.url, "X");
|
|
179
|
+
case 2:
|
|
180
|
+
z = _context2.sent;
|
|
181
|
+
_context2.next = 5;
|
|
182
|
+
return z.get([null, dataset.selectedVar.matrix_index], _zarr.GET_OPTIONS).then(function (result) {
|
|
183
|
+
setValues(result.data);
|
|
184
|
+
});
|
|
185
|
+
case 5:
|
|
186
|
+
case "end":
|
|
187
|
+
return _context2.stop();
|
|
188
|
+
}
|
|
189
|
+
}, _callee2);
|
|
190
|
+
}));
|
|
191
|
+
return function fetchData() {
|
|
192
|
+
return _ref3.apply(this, arguments);
|
|
193
|
+
};
|
|
194
|
+
}();
|
|
195
|
+
fetchData().catch(console.error);
|
|
196
|
+
}
|
|
197
|
+
}, [dataset.url, dataset.selectedObs, dataset.selectedVar]);
|
|
198
|
+
var layers = [new _layers.ScatterplotLayer({
|
|
199
|
+
id: "scatter-plot",
|
|
200
|
+
data: data,
|
|
201
|
+
radiusScale: radius,
|
|
202
|
+
radiusMinPixels: 1,
|
|
203
|
+
getPosition: function getPosition(d) {
|
|
204
|
+
return d.position;
|
|
205
|
+
},
|
|
206
|
+
getFillColor: function getFillColor(d) {
|
|
207
|
+
return d.color;
|
|
208
|
+
},
|
|
209
|
+
getRadius: 1
|
|
210
|
+
}), new _layers2.EditableGeoJsonLayer({
|
|
211
|
+
// id: "geojson-layer",
|
|
212
|
+
data: features,
|
|
213
|
+
mode: mode,
|
|
214
|
+
modeConfig: modeConfig,
|
|
215
|
+
selectedFeatureIndexes: selectedFeatureIndexes,
|
|
216
|
+
onEdit: function onEdit(_ref4) {
|
|
217
|
+
var updatedData = _ref4.updatedData;
|
|
218
|
+
setFeatures(updatedData);
|
|
219
|
+
}
|
|
220
|
+
})];
|
|
221
|
+
function onLayerClick(info) {
|
|
222
|
+
if (mode !== _editModes.ViewMode) {
|
|
223
|
+
// don't change selection while editing
|
|
224
|
+
return;
|
|
225
|
+
}
|
|
226
|
+
setSelectedFeatureIndexes(info.object ? [info.index] : []);
|
|
227
|
+
}
|
|
228
|
+
return /*#__PURE__*/_react.React.createElement(_react.React.Fragment, null, /*#__PURE__*/_react.React.createElement("div", {
|
|
229
|
+
className: "cherita-scatterplot"
|
|
230
|
+
}, /*#__PURE__*/_react.React.createElement(_react2.default, {
|
|
231
|
+
layers: layers,
|
|
232
|
+
initialViewState: viewport,
|
|
233
|
+
controller: true,
|
|
234
|
+
onClick: onLayerClick
|
|
235
|
+
}), /*#__PURE__*/_react.React.createElement(_editor.Toolbox, {
|
|
236
|
+
mode: mode,
|
|
237
|
+
onSetMode: function onSetMode(m) {
|
|
238
|
+
setModeConfig(null);
|
|
239
|
+
setMode(m);
|
|
240
|
+
},
|
|
241
|
+
modeConfig: modeConfig,
|
|
242
|
+
onSetModeConfig: setModeConfig,
|
|
243
|
+
geoJson: features,
|
|
244
|
+
onSetGeoJson: setFeatures,
|
|
245
|
+
onImport: setFeatures
|
|
246
|
+
}), /*#__PURE__*/_react.React.createElement(_Toolbox.Toolbox2, {
|
|
247
|
+
mode: mode,
|
|
248
|
+
onSetMode: function onSetMode(m) {
|
|
249
|
+
setModeConfig(null);
|
|
250
|
+
setMode(m);
|
|
251
|
+
},
|
|
252
|
+
modeConfig: modeConfig,
|
|
253
|
+
onSetModeConfig: setModeConfig,
|
|
254
|
+
geoJson: features,
|
|
255
|
+
onSetGeoJson: setFeatures,
|
|
256
|
+
onImport: setFeatures
|
|
257
|
+
})));
|
|
258
|
+
}
|
|
@@ -0,0 +1,68 @@
|
|
|
1
|
+
"use strict";
|
|
2
|
+
|
|
3
|
+
Object.defineProperty(exports, "__esModule", {
|
|
4
|
+
value: true
|
|
5
|
+
});
|
|
6
|
+
exports.Toolbox2 = Toolbox2;
|
|
7
|
+
require("bootstrap/dist/css/bootstrap.min.css");
|
|
8
|
+
var _Dropdown = _interopRequireDefault(require("react-bootstrap/Dropdown"));
|
|
9
|
+
var _react = require("react");
|
|
10
|
+
var _lodash = _interopRequireDefault(require("lodash"));
|
|
11
|
+
var _chromaJs = _interopRequireDefault(require("chroma-js"));
|
|
12
|
+
var _react2 = _interopRequireDefault(require("@deck.gl/react"));
|
|
13
|
+
var _layers = require("@deck.gl/layers");
|
|
14
|
+
var _DatasetContext = require("../../context/DatasetContext");
|
|
15
|
+
var _constants = require("../../constants/constants");
|
|
16
|
+
var _map = require("../../helpers/map");
|
|
17
|
+
var _zarr = require("../../helpers/zarr");
|
|
18
|
+
var _layers2 = require("@nebula.gl/layers");
|
|
19
|
+
var _editModes = require("@nebula.gl/edit-modes");
|
|
20
|
+
var _editor = require("@nebula.gl/editor");
|
|
21
|
+
var _Button = _interopRequireDefault(require("react-bootstrap/Button"));
|
|
22
|
+
var _DropdownButton = _interopRequireDefault(require("react-bootstrap/DropdownButton"));
|
|
23
|
+
var _ButtonGroup = _interopRequireDefault(require("react-bootstrap/ButtonGroup"));
|
|
24
|
+
var _reactFontawesome = require("@fortawesome/react-fontawesome");
|
|
25
|
+
var _freeSolidSvgIcons = require("@fortawesome/free-solid-svg-icons");
|
|
26
|
+
function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; }
|
|
27
|
+
function _slicedToArray(arr, i) { return _arrayWithHoles(arr) || _iterableToArrayLimit(arr, i) || _unsupportedIterableToArray(arr, i) || _nonIterableRest(); }
|
|
28
|
+
function _nonIterableRest() { throw new TypeError("Invalid attempt to destructure non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); }
|
|
29
|
+
function _unsupportedIterableToArray(o, minLen) { if (!o) return; if (typeof o === "string") return _arrayLikeToArray(o, minLen); var n = Object.prototype.toString.call(o).slice(8, -1); if (n === "Object" && o.constructor) n = o.constructor.name; if (n === "Map" || n === "Set") return Array.from(o); if (n === "Arguments" || /^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(n)) return _arrayLikeToArray(o, minLen); }
|
|
30
|
+
function _arrayLikeToArray(arr, len) { if (len == null || len > arr.length) len = arr.length; for (var i = 0, arr2 = new Array(len); i < len; i++) arr2[i] = arr[i]; return arr2; }
|
|
31
|
+
function _iterableToArrayLimit(arr, i) { var _i = null == arr ? null : "undefined" != typeof Symbol && arr[Symbol.iterator] || arr["@@iterator"]; if (null != _i) { var _s, _e, _x, _r, _arr = [], _n = !0, _d = !1; try { if (_x = (_i = _i.call(arr)).next, 0 === i) { if (Object(_i) !== _i) return; _n = !1; } else for (; !(_n = (_s = _x.call(_i)).done) && (_arr.push(_s.value), _arr.length !== i); _n = !0); } catch (err) { _d = !0, _e = err; } finally { try { if (!_n && null != _i.return && (_r = _i.return(), Object(_r) !== _r)) return; } finally { if (_d) throw _e; } } return _arr; } }
|
|
32
|
+
function _arrayWithHoles(arr) { if (Array.isArray(arr)) return arr; }
|
|
33
|
+
window.deck.log.level = 1;
|
|
34
|
+
function Toolbox2() {
|
|
35
|
+
var dataset = (0, _DatasetContext.useDataset)();
|
|
36
|
+
var dispatch = (0, _DatasetContext.useDatasetDispatch)();
|
|
37
|
+
var _useState = (0, _react.useState)(dataset.embedding),
|
|
38
|
+
_useState2 = _slicedToArray(_useState, 2),
|
|
39
|
+
active = _useState2[0],
|
|
40
|
+
setActive = _useState2[1];
|
|
41
|
+
(0, _react.useEffect)(function () {
|
|
42
|
+
setActive(dataset.embedding);
|
|
43
|
+
}, [dataset.embedding]);
|
|
44
|
+
return /*#__PURE__*/_react.React.createElement("div", {
|
|
45
|
+
className: "cherita-toolbox"
|
|
46
|
+
}, /*#__PURE__*/_react.React.createElement(_Dropdown.default, null, /*#__PURE__*/_react.React.createElement(_Dropdown.default.Toggle, {
|
|
47
|
+
variant: "success",
|
|
48
|
+
id: "dropdown-basic"
|
|
49
|
+
}, "Dropdown Button"), /*#__PURE__*/_react.React.createElement(_Dropdown.default.Menu, null, /*#__PURE__*/_react.React.createElement(_Dropdown.default.Item, {
|
|
50
|
+
href: "#/action-1"
|
|
51
|
+
}, "Action"), /*#__PURE__*/_react.React.createElement(_Dropdown.default.Item, {
|
|
52
|
+
href: "#/action-2"
|
|
53
|
+
}, "Another action"), /*#__PURE__*/_react.React.createElement(_Dropdown.default.Item, {
|
|
54
|
+
href: "#/action-3"
|
|
55
|
+
}, "Something else"))), /*#__PURE__*/_react.React.createElement(_ButtonGroup.default, null, /*#__PURE__*/_react.React.createElement(_Button.default, null, /*#__PURE__*/_react.React.createElement(_reactFontawesome.FontAwesomeIcon, {
|
|
56
|
+
icon: _freeSolidSvgIcons.faArrowPointer
|
|
57
|
+
}), " Mode"), /*#__PURE__*/_react.React.createElement(_Button.default, null, "2"), /*#__PURE__*/_react.React.createElement(_DropdownButton.default, {
|
|
58
|
+
as: _ButtonGroup.default,
|
|
59
|
+
title: "test" + /*#__PURE__*/_react.React.createElement(_reactFontawesome.FontAwesomeIcon, {
|
|
60
|
+
icon: _freeSolidSvgIcons.faArrowPointer
|
|
61
|
+
}),
|
|
62
|
+
id: "bg-nested-dropdown"
|
|
63
|
+
}, /*#__PURE__*/_react.React.createElement(_Dropdown.default.Item, {
|
|
64
|
+
eventKey: "1"
|
|
65
|
+
}, "Dropdown link"), /*#__PURE__*/_react.React.createElement(_Dropdown.default.Item, {
|
|
66
|
+
eventKey: "2"
|
|
67
|
+
}, "Dropdown link"))));
|
|
68
|
+
}
|