@haniffalab/cherita-react 0.1.12 → 0.2.0-dev.2024-02-12.4d768f57
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/components/dotplot/Dotplot.js +76 -63
- package/dist/components/heatmap/Heatmap.js +66 -56
- package/dist/components/matrixplot/Matrixplot.js +69 -59
- package/dist/components/obs-list/ObsList.js +124 -38
- package/dist/components/obsm-list/ObsmList.js +92 -0
- package/dist/components/scatterplot/Legend.js +58 -0
- package/dist/components/scatterplot/Scatterplot.js +119 -83
- package/dist/components/scatterplot/Toolbox.js +67 -47
- package/dist/components/var-list/VarList.js +221 -53
- package/dist/components/violin/Violin.js +84 -77
- package/dist/constants/constants.js +46 -3
- package/dist/context/DatasetContext.js +118 -28
- package/dist/helpers/color.js +34 -0
- package/dist/helpers/map.js +2 -3
- package/dist/index.js +7 -0
- package/dist/utils/LoadingSpinner.js +38 -0
- package/dist/utils/errors.js +53 -0
- package/dist/utils/requests.js +82 -11
- package/package.json +7 -2
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@@ -5,94 +5,262 @@ Object.defineProperty(exports, "__esModule", {
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value: true
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});
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exports.VarNamesList = VarNamesList;
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exports.VarSearchBar = VarSearchBar;
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require("bootstrap/dist/css/bootstrap.min.css");
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var _react = _interopRequireWildcard(require("react"));
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var _lodash = _interopRequireDefault(require("lodash"));
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var _requests = require("../../utils/requests");
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var _DatasetContext = require("../../context/DatasetContext");
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var _constants = require("../../constants/constants");
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var _reactBootstrap = require("react-bootstrap");
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var _LoadingSpinner = require("../../utils/LoadingSpinner");
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function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; }
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function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
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function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
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function _toConsumableArray(arr) { return _arrayWithoutHoles(arr) || _iterableToArray(arr) || _unsupportedIterableToArray(arr) || _nonIterableSpread(); }
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function _nonIterableSpread() { throw new TypeError("Invalid attempt to spread non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); }
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function _iterableToArray(iter) { if (typeof Symbol !== "undefined" && iter[Symbol.iterator] != null || iter["@@iterator"] != null) return Array.from(iter); }
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function _arrayWithoutHoles(arr) { if (Array.isArray(arr)) return _arrayLikeToArray(arr); }
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function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
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function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { _defineProperty(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
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function _defineProperty(obj, key, value) { key = _toPropertyKey(key); if (key in obj) { Object.defineProperty(obj, key, { value: value, enumerable: true, configurable: true, writable: true }); } else { obj[key] = value; } return obj; }
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function _toPropertyKey(arg) { var key = _toPrimitive(arg, "string"); return _typeof(key) === "symbol" ? key : String(key); }
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function _toPrimitive(input, hint) { if (_typeof(input) !== "object" || input === null) return input; var prim = input[Symbol.toPrimitive]; if (prim !== undefined) { var res = prim.call(input, hint || "default"); if (_typeof(res) !== "object") return res; throw new TypeError("@@toPrimitive must return a primitive value."); } return (hint === "string" ? String : Number)(input); }
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function _slicedToArray(arr, i) { return _arrayWithHoles(arr) || _iterableToArrayLimit(arr, i) || _unsupportedIterableToArray(arr, i) || _nonIterableRest(); }
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function _nonIterableRest() { throw new TypeError("Invalid attempt to destructure non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); }
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function _unsupportedIterableToArray(o, minLen) { if (!o) return; if (typeof o === "string") return _arrayLikeToArray(o, minLen); var n = Object.prototype.toString.call(o).slice(8, -1); if (n === "Object" && o.constructor) n = o.constructor.name; if (n === "Map" || n === "Set") return Array.from(o); if (n === "Arguments" || /^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(n)) return _arrayLikeToArray(o, minLen); }
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function _arrayLikeToArray(arr, len) { if (len == null || len > arr.length) len = arr.length; for (var i = 0, arr2 = new Array(len); i < len; i++) arr2[i] = arr[i]; return arr2; }
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function _iterableToArrayLimit(arr, i) { var _i = null == arr ? null : "undefined" != typeof Symbol && arr[Symbol.iterator] || arr["@@iterator"]; if (null != _i) { var _s, _e, _x, _r, _arr = [], _n = !0, _d = !1; try { if (_x = (_i = _i.call(arr)).next, 0 === i) { if (Object(_i) !== _i) return; _n = !1; } else for (; !(_n = (_s = _x.call(_i)).done) && (_arr.push(_s.value), _arr.length !== i); _n = !0); } catch (err) { _d = !0, _e = err; } finally { try { if (!_n && null != _i.return && (_r = _i.return(), Object(_r) !== _r)) return; } finally { if (_d) throw _e; } } return _arr; } }
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function _arrayWithHoles(arr) { if (Array.isArray(arr)) return arr; }
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function
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var _ref$
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var dispatch = (0, _DatasetContext.useDatasetDispatch)();
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function VarSearchBar(_ref) {
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var _ref$varNames = _ref.varNames,
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varNames = _ref$varNames === void 0 ? [] : _ref$varNames,
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onSelect = _ref.onSelect;
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var _useState = (0, _react.useState)([]),
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_useState2 = _slicedToArray(_useState, 2),
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var _useState3 = (0, _react.useState)(
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suggestions = _useState2[0],
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setSuggestions = _useState2[1];
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var _useState3 = (0, _react.useState)(false),
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_useState4 = _slicedToArray(_useState3, 2),
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showSuggestions = _useState4[0],
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setShowSuggestions = _useState4[1];
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var _useState5 = (0, _react.useState)(""),
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_useState6 = _slicedToArray(_useState5, 2),
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text = _useState6[0],
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setText = _useState6[1];
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var getSuggestions = (0, _react.useMemo)(function () {
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var filter = function filter(text) {
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if (text.length > 0) {
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var regex = new RegExp("^".concat(text), "i");
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var _filter = varNames.sort().filter(function (v) {
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return regex.test(v.name);
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});
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setSuggestions(_filter);
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setShowSuggestions(true);
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} else {
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setShowSuggestions(false);
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}
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};
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return _lodash.default.debounce(filter, 300);
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}, [varNames]);
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(0, _react.useEffect)(function () {
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(
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getSuggestions(text);
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}, [getSuggestions, text]);
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var suggestionsList = suggestions.map(function (item) {
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return /*#__PURE__*/_react.default.createElement(_reactBootstrap.Dropdown.Item, {
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key: item.name,
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as: "button",
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onClick: function onClick() {
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onSelect(item);
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}
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}, item.name);
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});
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return /*#__PURE__*/_react.default.createElement("div", null, /*#__PURE__*/_react.default.createElement(_reactBootstrap.Form, {
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onSubmit: function onSubmit(e) {
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e.preventDefault();
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}
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}, /*#__PURE__*/_react.default.createElement(_reactBootstrap.FormGroup, null, /*#__PURE__*/_react.default.createElement(_reactBootstrap.Form.Label, null, "Feature:"), /*#__PURE__*/_react.default.createElement(_reactBootstrap.Form.Control, {
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onFocus: function onFocus() {
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setShowSuggestions(text.length > 0);
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},
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onBlur: function onBlur() {
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_lodash.default.delay(function () {
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setShowSuggestions(false);
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}, 150);
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},
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type: "text",
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placeholder: "Search for a feature",
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value: text,
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onChange: function onChange(e) {
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setText(e.target.value);
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}
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}), /*#__PURE__*/_react.default.createElement(_reactBootstrap.Dropdown.Menu, {
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style: {
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width: "90%",
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maxHeight: "25vh",
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overflowY: "scroll"
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},
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show: showSuggestions
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}, suggestionsList))));
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}
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function VarNamesList(_ref2) {
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var _ref2$mode = _ref2.mode,
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mode = _ref2$mode === void 0 ? _constants.SELECTION_MODES.SINGLE : _ref2$mode;
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var ENDPOINT = "var/names";
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var dataset = (0, _DatasetContext.useDataset)();
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var dispatch = (0, _DatasetContext.useDatasetDispatch)();
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var _useState7 = (0, _react.useState)([]),
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_useState8 = _slicedToArray(_useState7, 2),
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varNames = _useState8[0],
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setVarNames = _useState8[1];
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var _useState9 = (0, _react.useState)(false),
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_useState10 = _slicedToArray(_useState9, 2),
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updatedVarNames = _useState10[0],
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setUpdatedVarNames = _useState10[1];
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var _useState11 = (0, _react.useState)(mode ? mode === _constants.SELECTION_MODES.SINGLE ? [dataset.selectVar] : dataset.selectedMultiVar : []),
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_useState12 = _slicedToArray(_useState11, 2),
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varButtons = _useState12[0],
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setVarButtons = _useState12[1];
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var _useState13 = (0, _react.useState)(mode === _constants.SELECTION_MODES.SINGLE ? dataset.selectVar : dataset.selectedMultiVar),
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_useState14 = _slicedToArray(_useState13, 2),
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active = _useState14[0],
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setActive = _useState14[1];
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var _useState15 = (0, _react.useState)({
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url: dataset.url
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})
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}),
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_useState16 = _slicedToArray(_useState15, 2),
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params = _useState16[0],
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setParams = _useState16[1];
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(0, _react.useEffect)(function () {
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setParams(function (p) {
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return _objectSpread(_objectSpread({}, p), {}, {
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url: dataset.url
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});
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});
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}, [dataset.url]);
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var _useFetch = (0, _requests.useFetch)(ENDPOINT, params, {
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refetchOnMount: false
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}),
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fetchedData = _useFetch.fetchedData,
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isPending = _useFetch.isPending,
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serverError = _useFetch.serverError;
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var validateSelection = (0, _react.useCallback)(function (selectedVar, mode) {
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if (updatedVarNames) {
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if (mode === _constants.SELECTION_MODES.SINGLE) {
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if (selectedVar && !_lodash.default.some(varNames, selectedVar)) {
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setActive(null);
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dispatch({
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type: "varSelected",
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var: null
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});
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}
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} else {
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if (selectedVar.length && !_lodash.default.every(selectedVar, function (v) {
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return _lodash.default.some(varNames, v);
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})) {
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setActive([]);
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dispatch({
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type: "multiVarReset",
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var: []
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});
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}
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}
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}
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}, [dispatch, varNames, updatedVarNames]);
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(0, _react.useEffect)(function () {
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if (!isPending && !serverError) {
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setVarNames(fetchedData);
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setUpdatedVarNames(true);
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}
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}, [fetchedData, isPending, serverError]);
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(0, _react.useEffect)(function () {
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if (mode === _constants.SELECTION_MODES.SINGLE && dataset.selectedVar) {
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validateSelection(dataset.selectVar, mode);
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setActive(dataset.selectedVar.matrix_index);
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}
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}, [mode, dataset.selectedVar]);
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}, [mode, dataset.selectedVar, dataset.selectVar, validateSelection]);
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(0, _react.useEffect)(function () {
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if (mode === _constants.SELECTION_MODES.MULTIPLE) {
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validateSelection(dataset.selectedMultiVar, mode);
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setActive(dataset.selectedMultiVar.map(function (i) {
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return i.matrix_index;
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}));
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}
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}, [mode, dataset.selectedMultiVar]);
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var
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}, [mode, dataset.selectedMultiVar, validateSelection]);
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var selectVar = function selectVar(item) {
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setVarButtons(function () {
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if (varButtons[0] && varButtons.find(function (v) {
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return v.matrix_index === item.matrix_index;
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})) {
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return varButtons;
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} else {
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return [].concat(_toConsumableArray(varButtons), [item]);
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}
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});
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onClick: function onClick() {
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dispatch({
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type: "varSelected",
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var: item
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});
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}
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}, item.name);
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dispatch({
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type: "varSelected",
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var: item
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});
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} else if (mode === _constants.SELECTION_MODES.MULTIPLE) {
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dispatch({
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}
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exports.VIOLIN_MODES = exports.VIOLINPLOT_STANDARDSCALES = exports.SELECTION_MODES = exports.PLOTLY_COLORSCALES = exports.MATRIXPLOT_STANDARDSCALES = exports.
|
|
6
|
+
exports.VIOLIN_MODES = exports.VIOLINPLOT_STANDARDSCALES = exports.SELECTION_MODES = exports.PLOTLY_COLORSCALES = exports.MATRIXPLOT_STANDARDSCALES = exports.LOCAL_STORAGE_KEY = exports.DOTPLOT_STANDARDSCALES = exports.CHROMA_COLORSCALES = void 0;
|
|
7
|
+
var LOCAL_STORAGE_KEY = "CHERITA";
|
|
8
|
+
exports.LOCAL_STORAGE_KEY = LOCAL_STORAGE_KEY;
|
|
7
9
|
var PLOTLY_COLORSCALES = ["Blackbody", "Bluered", "Blues", "Cividis", "Earth", "Electric", "Greens", "Greys", "Hot", "Jet", "Picnic", "Portland", "Rainbow", "RdBu", "Reds", "Viridis", "YlGnBu", "YlOrRd"];
|
|
8
10
|
exports.PLOTLY_COLORSCALES = PLOTLY_COLORSCALES;
|
|
9
|
-
var
|
|
10
|
-
|
|
11
|
+
var CHROMA_COLORSCALES = {
|
|
12
|
+
OrRd: ["#fff7ec", "#fee8c8", "#fdd49e", "#fdbb84", "#fc8d59", "#ef6548", "#d7301f", "#b30000", "#7f0000"],
|
|
13
|
+
PuBu: ["#fff7fb", "#ece7f2", "#d0d1e6", "#a6bddb", "#74a9cf", "#3690c0", "#0570b0", "#045a8d", "#023858"],
|
|
14
|
+
BuPu: ["#f7fcfd", "#e0ecf4", "#bfd3e6", "#9ebcda", "#8c96c6", "#8c6bb1", "#88419d", "#810f7c", "#4d004b"],
|
|
15
|
+
Oranges: ["#fff5eb", "#fee6ce", "#fdd0a2", "#fdae6b", "#fd8d3c", "#f16913", "#d94801", "#a63603", "#7f2704"],
|
|
16
|
+
BuGn: ["#f7fcfd", "#e5f5f9", "#ccece6", "#99d8c9", "#66c2a4", "#41ae76", "#238b45", "#006d2c", "#00441b"],
|
|
17
|
+
YlOrBr: ["#ffffe5", "#fff7bc", "#fee391", "#fec44f", "#fe9929", "#ec7014", "#cc4c02", "#993404", "#662506"],
|
|
18
|
+
YlGn: ["#ffffe5", "#f7fcb9", "#d9f0a3", "#addd8e", "#78c679", "#41ab5d", "#238443", "#006837", "#004529"],
|
|
19
|
+
Reds: ["#fff5f0", "#fee0d2", "#fcbba1", "#fc9272", "#fb6a4a", "#ef3b2c", "#cb181d", "#a50f15", "#67000d"],
|
|
20
|
+
RdPu: ["#fff7f3", "#fde0dd", "#fcc5c0", "#fa9fb5", "#f768a1", "#dd3497", "#ae017e", "#7a0177", "#49006a"],
|
|
21
|
+
Greens: ["#f7fcf5", "#e5f5e0", "#c7e9c0", "#a1d99b", "#74c476", "#41ab5d", "#238b45", "#006d2c", "#00441b"],
|
|
22
|
+
YlGnBu: ["#ffffd9", "#edf8b1", "#c7e9b4", "#7fcdbb", "#41b6c4", "#1d91c0", "#225ea8", "#253494", "#081d58"],
|
|
23
|
+
Purples: ["#fcfbfd", "#efedf5", "#dadaeb", "#bcbddc", "#9e9ac8", "#807dba", "#6a51a3", "#54278f", "#3f007d"],
|
|
24
|
+
GnBu: ["#f7fcf0", "#e0f3db", "#ccebc5", "#a8ddb5", "#7bccc4", "#4eb3d3", "#2b8cbe", "#0868ac", "#084081"],
|
|
25
|
+
Greys: ["#ffffff", "#f0f0f0", "#d9d9d9", "#bdbdbd", "#969696", "#737373", "#525252", "#252525", "#000000"],
|
|
26
|
+
YlOrRd: ["#ffffcc", "#ffeda0", "#fed976", "#feb24c", "#fd8d3c", "#fc4e2a", "#e31a1c", "#bd0026", "#800026"],
|
|
27
|
+
PuRd: ["#f7f4f9", "#e7e1ef", "#d4b9da", "#c994c7", "#df65b0", "#e7298a", "#ce1256", "#980043", "#67001f"],
|
|
28
|
+
Blues: ["#f7fbff", "#deebf7", "#c6dbef", "#9ecae1", "#6baed6", "#4292c6", "#2171b5", "#08519c", "#08306b"],
|
|
29
|
+
PuBuGn: ["#fff7fb", "#ece2f0", "#d0d1e6", "#a6bddb", "#67a9cf", "#3690c0", "#02818a", "#016c59", "#014636"],
|
|
30
|
+
Viridis: ["#440154", "#482777", "#3f4a8a", "#31678e", "#26838f", "#1f9d8a", "#6cce5a", "#b6de2b", "#fee825"],
|
|
31
|
+
// diverging
|
|
32
|
+
|
|
33
|
+
Spectral: ["#9e0142", "#d53e4f", "#f46d43", "#fdae61", "#fee08b", "#ffffbf", "#e6f598", "#abdda4", "#66c2a5", "#3288bd", "#5e4fa2"],
|
|
34
|
+
RdYlGn: ["#a50026", "#d73027", "#f46d43", "#fdae61", "#fee08b", "#ffffbf", "#d9ef8b", "#a6d96a", "#66bd63", "#1a9850", "#006837"],
|
|
35
|
+
RdBu: ["#67001f", "#b2182b", "#d6604d", "#f4a582", "#fddbc7", "#f7f7f7", "#d1e5f0", "#92c5de", "#4393c3", "#2166ac", "#053061"],
|
|
36
|
+
PiYG: ["#8e0152", "#c51b7d", "#de77ae", "#f1b6da", "#fde0ef", "#f7f7f7", "#e6f5d0", "#b8e186", "#7fbc41", "#4d9221", "#276419"],
|
|
37
|
+
PRGn: ["#40004b", "#762a83", "#9970ab", "#c2a5cf", "#e7d4e8", "#f7f7f7", "#d9f0d3", "#a6dba0", "#5aae61", "#1b7837", "#00441b"],
|
|
38
|
+
RdYlBu: ["#a50026", "#d73027", "#f46d43", "#fdae61", "#fee090", "#ffffbf", "#e0f3f8", "#abd9e9", "#74add1", "#4575b4", "#313695"],
|
|
39
|
+
BrBG: ["#543005", "#8c510a", "#bf812d", "#dfc27d", "#f6e8c3", "#f5f5f5", "#c7eae5", "#80cdc1", "#35978f", "#01665e", "#003c30"],
|
|
40
|
+
RdGy: ["#67001f", "#b2182b", "#d6604d", "#f4a582", "#fddbc7", "#ffffff", "#e0e0e0", "#bababa", "#878787", "#4d4d4d", "#1a1a1a"],
|
|
41
|
+
PuOr: ["#7f3b08", "#b35806", "#e08214", "#fdb863", "#fee0b6", "#f7f7f7", "#d8daeb", "#b2abd2", "#8073ac", "#542788", "#2d004b"],
|
|
42
|
+
// qualitative
|
|
43
|
+
|
|
44
|
+
Set2: ["#66c2a5", "#fc8d62", "#8da0cb", "#e78ac3", "#a6d854", "#ffd92f", "#e5c494", "#b3b3b3"],
|
|
45
|
+
Accent: ["#7fc97f", "#beaed4", "#fdc086", "#ffff99", "#386cb0", "#f0027f", "#bf5b17", "#666666"],
|
|
46
|
+
Set1: ["#e41a1c", "#377eb8", "#4daf4a", "#984ea3", "#ff7f00", "#ffff33", "#a65628", "#f781bf", "#999999"],
|
|
47
|
+
Set3: ["#8dd3c7", "#ffffb3", "#bebada", "#fb8072", "#80b1d3", "#fdb462", "#b3de69", "#fccde5", "#d9d9d9", "#bc80bd", "#ccebc5", "#ffed6f"],
|
|
48
|
+
Dark2: ["#1b9e77", "#d95f02", "#7570b3", "#e7298a", "#66a61e", "#e6ab02", "#a6761d", "#666666"],
|
|
49
|
+
Paired: ["#a6cee3", "#1f78b4", "#b2df8a", "#33a02c", "#fb9a99", "#e31a1c", "#fdbf6f", "#ff7f00", "#cab2d6", "#6a3d9a", "#ffff99", "#b15928"],
|
|
50
|
+
Pastel2: ["#b3e2cd", "#fdcdac", "#cbd5e8", "#f4cae4", "#e6f5c9", "#fff2ae", "#f1e2cc", "#cccccc"],
|
|
51
|
+
Pastel1: ["#fbb4ae", "#b3cde3", "#ccebc5", "#decbe4", "#fed9a6", "#ffffcc", "#e5d8bd", "#fddaec", "#f2f2f2"]
|
|
52
|
+
};
|
|
53
|
+
exports.CHROMA_COLORSCALES = CHROMA_COLORSCALES;
|
|
11
54
|
var SELECTION_MODES = {
|
|
12
55
|
SINGLE: "single",
|
|
13
56
|
MULTIPLE: "multiple"
|