@haniffalab/cherita-react 0.1.12-dev.2023-12-05.b3b4991a → 0.1.12-dev.2023-12-19.599c72fc
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/components/dotplot/Dotplot.js +54 -50
- package/dist/components/heatmap/Heatmap.js +39 -38
- package/dist/components/matrixplot/Matrixplot.js +41 -39
- package/dist/components/obs-list/ObsList.js +35 -16
- package/dist/components/obsm-list/ObsmList.js +84 -0
- package/dist/components/scatterplot/Scatterplot.js +34 -72
- package/dist/components/scatterplot/Toolbox.js +78 -45
- package/dist/components/var-list/VarList.js +26 -7
- package/dist/components/violin/Violin.js +56 -59
- package/dist/constants/constants.js +1 -3
- package/dist/context/DatasetContext.js +40 -10
- package/dist/index.js +7 -0
- package/dist/utils/requests.js +50 -2
- package/package.json +6 -2
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@@ -10,7 +10,6 @@ require("bootstrap/dist/css/bootstrap.min.css");
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var _Dropdown = _interopRequireDefault(require("react-bootstrap/Dropdown"));
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var _react = _interopRequireWildcard(require("react"));
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var _reactPlotly = _interopRequireDefault(require("react-plotly.js"));
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var _lodash = _interopRequireDefault(require("lodash"));
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var _DatasetContext = require("../../context/DatasetContext");
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var _constants = require("../../constants/constants");
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var _requests = require("../../utils/requests");
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@@ -173,6 +172,7 @@ function DotplotControls() {
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}, "Autoscale"))));
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}
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function Dotplot() {
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var ENDPOINT = "dotplot";
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var dataset = (0, _DatasetContext.useDataset)();
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var dispatch = (0, _DatasetContext.useDatasetDispatch)();
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var colorscale = (0, _react.useRef)(dataset.controls.colorScale);
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@@ -188,8 +188,40 @@ function Dotplot() {
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_useState8 = _slicedToArray(_useState7, 2),
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hasSelections = _useState8[0],
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setHasSelections = _useState8[1];
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var _useState9 = (0, _react.useState)({
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url: dataset.url,
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selectedObs: dataset.selectedObs,
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selectedMultiVar: dataset.selectedMultiVar.map(function (i) {
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return i.name;
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}),
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standardScale: dataset.controls.standardScale,
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meanOnlyExpressed: dataset.controls.meanOnlyExpressed,
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expressionCutoff: dataset.controls.expressionCutoff
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}),
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_useState10 = _slicedToArray(_useState9, 2),
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params = _useState10[0],
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setParams = _useState10[1];
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// @TODO: set default scale
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(0, _react.useEffect)(function () {
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if (dataset.selectedObs && dataset.selectedMultiVar.length) {
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setHasSelections(true);
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} else {
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setHasSelections(false);
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}
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setParams(function (p) {
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return _objectSpread(_objectSpread({}, p), {}, {
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url: dataset.url,
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selectedObs: dataset.selectedObs,
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selectedMultiVar: dataset.selectedMultiVar.map(function (i) {
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return i.name;
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}),
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standardScale: dataset.controls.standardScale,
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meanOnlyExpressed: dataset.controls.meanOnlyExpressed,
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expressionCutoff: dataset.controls.expressionCutoff
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});
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});
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}, [dataset.url, dataset.selectedObs, dataset.selectedMultiVar, dataset.controls.standardScale, dataset.controls.meanOnlyExpressed, dataset.controls.expressionCutoff]);
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var updateColorscale = (0, _react.useCallback)(function (colorscale) {
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setLayout(function (l) {
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return _objectSpread(_objectSpread({}, l), {}, {
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@@ -199,56 +231,28 @@ function Dotplot() {
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});
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});
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}, []);
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selectedObs: dataset.selectedObs,
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selectedMultiVar: dataset.selectedMultiVar.map(function (i) {
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return i.name;
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}),
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standardScale: dataset.controls.standardScale,
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meanOnlyExpressed: dataset.controls.meanOnlyExpressed,
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expressionCutoff: dataset.controls.expressionCutoff
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}, abortController.signal).then(function (data) {
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setData(data.data);
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setLayout(data.layout);
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dispatch({
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type: "set.controls.colorAxis",
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colorAxis: {
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dmin: data.range.min.toFixed(1),
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dmax: data.range.max.toFixed(1),
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cmin: data.range.min.toFixed(1),
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cmax: data.range.max.toFixed(1)
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}
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});
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updateColorscale(colorscale.current);
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}).catch(function (response) {
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if (response.name !== "AbortError") {
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response.json().then(function (json) {
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console.log(json.message);
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});
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}
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});
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} else {
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setHasSelections(false);
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}
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};
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// delay invoking the fetch function to avoid firing requests
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// while dependencies might still be getting updated by the user
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return _lodash.default.debounce(func, 500);
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}, [dataset.url, dataset.selectedObs, dataset.selectedMultiVar, dataset.controls.standardScale, dataset.controls.meanOnlyExpressed, dataset.controls.expressionCutoff, updateColorscale, dispatch]);
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var _useDebouncedFetch = (0, _requests.useDebouncedFetch)(ENDPOINT, params, 500, {
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enabled: !!params.selectedObs && !!params.selectedMultiVar.length
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}),
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fetchedData = _useDebouncedFetch.fetchedData,
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isPending = _useDebouncedFetch.isPending,
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serverError = _useDebouncedFetch.serverError;
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(0, _react.useEffect)(function () {
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if (hasSelections && !isPending && !serverError) {
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setData(fetchedData.data);
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setLayout(fetchedData.layout);
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dispatch({
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type: "set.controls.colorAxis",
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colorAxis: {
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dmin: fetchedData.range.min.toFixed(1),
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dmax: fetchedData.range.max.toFixed(1),
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cmin: fetchedData.range.min.toFixed(1),
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cmax: fetchedData.range.max.toFixed(1)
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}
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});
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updateColorscale(colorscale.current);
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}
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}, [fetchedData, isPending, serverError, hasSelections, dispatch, updateColorscale]);
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(0, _react.useEffect)(function () {
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colorscale.current = dataset.controls.colorScale;
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updateColorscale(colorscale.current);
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var _Dropdown = _interopRequireDefault(require("react-bootstrap/Dropdown"));
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var _react = _interopRequireWildcard(require("react"));
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var _reactPlotly = _interopRequireDefault(require("react-plotly.js"));
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var _lodash = _interopRequireDefault(require("lodash"));
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var _DatasetContext = require("../../context/DatasetContext");
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var _constants = require("../../constants/constants");
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var _requests = require("../../utils/requests");
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@@ -49,6 +48,7 @@ function HeatmapControls() {
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}, dataset.controls.colorScale), /*#__PURE__*/_react.default.createElement(_Dropdown.default.Menu, null, colormapList));
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}
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function Heatmap() {
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var ENDPOINT = "heatmap";
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var dataset = (0, _DatasetContext.useDataset)();
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var colorscale = (0, _react.useRef)(dataset.controls.colorScale);
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var _useState = (0, _react.useState)([]),
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_useState6 = _slicedToArray(_useState5, 2),
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hasSelections = _useState6[0],
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setHasSelections = _useState6[1];
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var _useState7 = (0, _react.useState)({
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url: dataset.url,
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selectedObs: dataset.selectedObs,
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selectedMultiVar: dataset.selectedMultiVar.map(function (i) {
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return i.name;
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})
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}),
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_useState8 = _slicedToArray(_useState7, 2),
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params = _useState8[0],
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setParams = _useState8[1];
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(0, _react.useEffect)(function () {
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setHasSelections(true);
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} else {
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setHasSelections(false);
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}
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setParams(function (p) {
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return _objectSpread(_objectSpread({}, p), {}, {
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url: dataset.url,
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selectedObs: dataset.selectedObs,
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selectedMultiVar: dataset.selectedMultiVar.map(function (i) {
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return i.name;
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})
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});
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});
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}, [dataset.selectedMultiVar, dataset.selectedObs, dataset.url]);
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var updateColorscale = (0, _react.useCallback)(function (colorscale) {
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setLayout(function (l) {
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return _objectSpread(_objectSpread({}, l), {}, {
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});
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}, []);
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selectedObs: dataset.selectedObs,
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selectedMultiVar: dataset.selectedMultiVar.map(function (i) {
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return i.name;
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})
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}, abortController.signal).then(function (data) {
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setData(data.data);
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setLayout(data.layout);
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updateColorscale(colorscale.current);
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}).catch(function (response) {
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});
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}
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});
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} else {
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}
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};
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return _lodash.default.debounce(func, 500);
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}, [dataset.selectedMultiVar, dataset.selectedObs, dataset.url, updateColorscale]);
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var _useDebouncedFetch = (0, _requests.useDebouncedFetch)(ENDPOINT, params, 500, {
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enabled: !!params.selectedObs && !!params.selectedMultiVar.length
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}),
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fetchedData = _useDebouncedFetch.fetchedData,
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isPending = _useDebouncedFetch.isPending,
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serverError = _useDebouncedFetch.serverError;
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};
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}, [update]);
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if (hasSelections && !isPending && !serverError) {
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setData(fetchedData.data);
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setLayout(fetchedData.layout);
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updateColorscale(colorscale.current);
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}
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}, [fetchedData, hasSelections, isPending, serverError, updateColorscale]);
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colorscale.current = dataset.controls.colorScale;
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updateColorscale(colorscale.current);
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var _reactBootstrap = require("react-bootstrap");
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}, dataset.controls.standardScale), /*#__PURE__*/_react.default.createElement(_Dropdown.default.Menu, null, standardScaleList)))));
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function Matrixplot() {
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var ENDPOINT = "matrixplot";
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var dataset = (0, _DatasetContext.useDataset)();
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var colorscale = (0, _react.useRef)(dataset.controls.colorScale);
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_useState6 = _slicedToArray(_useState5, 2),
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hasSelections = _useState6[0],
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setHasSelections = _useState6[1];
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var _useState7 = (0, _react.useState)({
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url: dataset.url,
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selectedObs: dataset.selectedObs,
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selectedMultiVar: dataset.selectedMultiVar.map(function (i) {
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return i.name;
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}),
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standardScale: dataset.controls.standardScale
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}),
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_useState8 = _slicedToArray(_useState7, 2),
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params = _useState8[0],
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setParams = _useState8[1];
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} else {
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setHasSelections(false);
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}
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setParams(function (p) {
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return _objectSpread(_objectSpread({}, p), {}, {
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url: dataset.url,
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selectedObs: dataset.selectedObs,
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selectedMultiVar: dataset.selectedMultiVar.map(function (i) {
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return i.name;
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}),
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standardScale: dataset.controls.standardScale
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});
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});
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}, [dataset.controls.standardScale, dataset.selectedMultiVar, dataset.selectedObs, dataset.url]);
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setLayout(function (l) {
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return _objectSpread(_objectSpread({}, l), {}, {
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function _typeof(obj) { "@babel/helpers - typeof"; return _typeof = "function" == typeof Symbol && "symbol" == typeof Symbol.iterator ? function (obj) { return typeof obj; } : function (obj) { return obj && "function" == typeof Symbol && obj.constructor === Symbol && obj !== Symbol.prototype ? "symbol" : typeof obj; }, _typeof(obj); }
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function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
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function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
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function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { _defineProperty(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
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function _defineProperty(obj, key, value) { key = _toPropertyKey(key); if (key in obj) { Object.defineProperty(obj, key, { value: value, enumerable: true, configurable: true, writable: true }); } else { obj[key] = value; } return obj; }
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function _toPrimitive(input, hint) { if (_typeof(input) !== "object" || input === null) return input; var prim = input[Symbol.toPrimitive]; if (prim !== undefined) { var res = prim.call(input, hint || "default"); if (_typeof(res) !== "object") return res; throw new TypeError("@@toPrimitive must return a primitive value."); } return (hint === "string" ? String : Number)(input); }
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|
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|
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function _unsupportedIterableToArray(o, minLen) { if (!o) return; if (typeof o === "string") return _arrayLikeToArray(o, minLen); var n = Object.prototype.toString.call(o).slice(8, -1); if (n === "Object" && o.constructor) n = o.constructor.name; if (n === "Map" || n === "Set") return Array.from(o); if (n === "Arguments" || /^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(n)) return _arrayLikeToArray(o, minLen); }
|
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function _arrayLikeToArray(arr, len) { if (len == null || len > arr.length) len = arr.length; for (var i = 0, arr2 = new Array(len); i < len; i++) arr2[i] = arr[i]; return arr2; }
|
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function _iterableToArrayLimit(arr, i) { var _i = null == arr ? null : "undefined" != typeof Symbol && arr[Symbol.iterator] || arr["@@iterator"]; if (null != _i) { var _s, _e, _x, _r, _arr = [], _n = !0, _d = !1; try { if (_x = (_i = _i.call(arr)).next, 0 === i) { if (Object(_i) !== _i) return; _n = !1; } else for (; !(_n = (_s = _x.call(_i)).done) && (_arr.push(_s.value), _arr.length !== i); _n = !0); } catch (err) { _d = !0, _e = err; } finally { try { if (!_n && null != _i.return && (_r = _i.return(), Object(_r) !== _r)) return; } finally { if (_d) throw _e; } } return _arr; } }
|
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|
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|
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|
|
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|
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|
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|
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|
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|
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|
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obsmKeysList = _useState2[0],
|
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setObsmKeysList = _useState2[1];
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|
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|
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_useState4 = _slicedToArray(_useState3, 2),
|
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|
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active = _useState4[0],
|
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|
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setActive = _useState4[1];
|
|
37
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+
var _useState5 = (0, _react.useState)({
|
|
38
|
+
url: dataset.url
|
|
39
|
+
}),
|
|
40
|
+
_useState6 = _slicedToArray(_useState5, 2),
|
|
41
|
+
params = _useState6[0],
|
|
42
|
+
setParams = _useState6[1];
|
|
43
|
+
(0, _react.useEffect)(function () {
|
|
44
|
+
setParams(function (p) {
|
|
45
|
+
return _objectSpread(_objectSpread({}, p), {}, {
|
|
46
|
+
url: dataset.url
|
|
47
|
+
});
|
|
48
|
+
});
|
|
49
|
+
}, [dataset.url]);
|
|
50
|
+
var _useFetch = (0, _requests.useFetch)(ENDPOINT, params, {
|
|
51
|
+
refetchOnMount: false
|
|
52
|
+
}),
|
|
53
|
+
fetchedData = _useFetch.fetchedData,
|
|
54
|
+
isPending = _useFetch.isPending,
|
|
55
|
+
serverError = _useFetch.serverError;
|
|
56
|
+
(0, _react.useEffect)(function () {
|
|
57
|
+
if (!isPending && !serverError) {
|
|
58
|
+
setObsmKeysList(fetchedData);
|
|
59
|
+
}
|
|
60
|
+
}, [fetchedData, isPending, serverError]);
|
|
61
|
+
(0, _react.useEffect)(function () {
|
|
62
|
+
if (dataset.selectedObsm) {
|
|
63
|
+
setActive(dataset.selectedObsm);
|
|
64
|
+
}
|
|
65
|
+
}, [dataset.selectedObsm]);
|
|
66
|
+
var obsmList = obsmKeysList.map(function (item) {
|
|
67
|
+
return /*#__PURE__*/_react.default.createElement("button", {
|
|
68
|
+
type: "button",
|
|
69
|
+
key: item,
|
|
70
|
+
className: "list-group-item list-grou-item-action ".concat(active === item && "active"),
|
|
71
|
+
onClick: function onClick() {
|
|
72
|
+
dispatch({
|
|
73
|
+
type: "obsmSelected",
|
|
74
|
+
obsm: item
|
|
75
|
+
});
|
|
76
|
+
}
|
|
77
|
+
}, item);
|
|
78
|
+
});
|
|
79
|
+
return /*#__PURE__*/_react.default.createElement("div", {
|
|
80
|
+
className: ""
|
|
81
|
+
}, /*#__PURE__*/_react.default.createElement("div", {
|
|
82
|
+
className: "list-group overflow-auto mh-100"
|
|
83
|
+
}, obsmList));
|
|
84
|
+
}
|