@gyoungwe/research-suite 0.1.3 → 0.1.6

package/node_modules/@gyoungwe/pi-knowledge/dist/maintenance/plan.d.ts

@@ -0,0 +1,41 @@
+export type MaintenanceItemKind = "missing-topic" | "source-changed" | "orphan" | "unlinked";
+export interface MaintenanceItem {
+    readonly id: string;
+    readonly kind: MaintenanceItemKind;
+    readonly path: string;
+    readonly title?: string;
+    readonly detail?: string;
+}
+export interface MaintenanceGraphNode {
+    readonly path: string;
+    readonly title?: string;
+    readonly kind?: string;
+    readonly degree?: number;
+    readonly warnings?: readonly string[];
+    readonly isInfrastructure?: boolean;
+    readonly nodeType?: string;
+}
+export interface MaintenanceGraph {
+    readonly nodes?: readonly MaintenanceGraphNode[];
+    readonly edges?: readonly {
+        source: string;
+        target: string;
+        type?: string;
+    }[];
+    readonly semantic?: {
+        nodes?: readonly MaintenanceGraphNode[];
+        edges?: readonly {
+            source: string;
+            target: string;
+            type?: string;
+        }[];
+    };
+}
+export interface MaintenanceSettings {
+    readonly enabled: boolean;
+    readonly maxItems: number;
+    readonly dailyLimit: number;
+    readonly model?: string | null;
+}
+export declare function planMaintenance(_status: unknown, graph: MaintenanceGraph | null, settings: MaintenanceSettings): MaintenanceItem[];
+//# sourceMappingURL=plan.d.ts.map

package/node_modules/@gyoungwe/pi-knowledge/dist/maintenance/plan.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"plan.d.ts","sourceRoot":"","sources":["../../src/maintenance/plan.ts"],"names":[],"mappings":"AAEA,MAAM,MAAM,mBAAmB,GAAG,eAAe,GAAG,gBAAgB,GAAG,QAAQ,GAAG,UAAU,CAAC;AAE7F,MAAM,WAAW,eAAe;IAC/B,QAAQ,CAAC,EAAE,EAAE,MAAM,CAAC;IACpB,QAAQ,CAAC,IAAI,EAAE,mBAAmB,CAAC;IACnC,QAAQ,CAAC,IAAI,EAAE,MAAM,CAAC;IACtB,QAAQ,CAAC,KAAK,CAAC,EAAE,MAAM,CAAC;IACxB,QAAQ,CAAC,MAAM,CAAC,EAAE,MAAM,CAAC;CACzB;AAED,MAAM,WAAW,oBAAoB;IACpC,QAAQ,CAAC,IAAI,EAAE,MAAM,CAAC;IACtB,QAAQ,CAAC,KAAK,CAAC,EAAE,MAAM,CAAC;IACxB,QAAQ,CAAC,IAAI,CAAC,EAAE,MAAM,CAAC;IACvB,QAAQ,CAAC,MAAM,CAAC,EAAE,MAAM,CAAC;IACzB,QAAQ,CAAC,QAAQ,CAAC,EAAE,SAAS,MAAM,EAAE,CAAC;IACtC,QAAQ,CAAC,gBAAgB,CAAC,EAAE,OAAO,CAAC;IACpC,QAAQ,CAAC,QAAQ,CAAC,EAAE,MAAM,CAAC;CAC3B;AAED,MAAM,WAAW,gBAAgB;IAChC,QAAQ,CAAC,KAAK,CAAC,EAAE,SAAS,oBAAoB,EAAE,CAAC;IACjD,QAAQ,CAAC,KAAK,CAAC,EAAE,SAAS;QAAE,MAAM,EAAE,MAAM,CAAC;QAAC,MAAM,EAAE,MAAM,CAAC;QAAC,IAAI,CAAC,EAAE,MAAM,CAAA;KAAE,EAAE,CAAC;IAC9E,QAAQ,CAAC,QAAQ,CAAC,EAAE;QAAE,KAAK,CAAC,EAAE,SAAS,oBAAoB,EAAE,CAAC;QAAC,KAAK,CAAC,EAAE,SAAS;YAAE,MAAM,EAAE,MAAM,CAAC;YAAC,MAAM,EAAE,MAAM,CAAC;YAAC,IAAI,CAAC,EAAE,MAAM,CAAA;SAAE,EAAE,CAAA;KAAE,CAAC;CACtI;AAED,MAAM,WAAW,mBAAmB;IACnC,QAAQ,CAAC,OAAO,EAAE,OAAO,CAAC;IAC1B,QAAQ,CAAC,QAAQ,EAAE,MAAM,CAAC;IAC1B,QAAQ,CAAC,UAAU,EAAE,MAAM,CAAC;IAC5B,QAAQ,CAAC,KAAK,CAAC,EAAE,MAAM,GAAG,IAAI,CAAC;CAC/B;AASD,wBAAgB,eAAe,CAC9B,OAAO,EAAE,OAAO,EAChB,KAAK,EAAE,gBAAgB,GAAG,IAAI,EAC9B,QAAQ,EAAE,mBAAmB,GAC3B,eAAe,EAAE,CAwCnB"}

package/node_modules/@gyoungwe/pi-knowledge/dist/maintenance/prompts.d.ts

@@ -0,0 +1,10 @@
+export type MaintenancePromptKind = "missing-topic" | "source-changed" | "orphan" | "unlinked";
+export declare function maintenancePrompt(kind: MaintenancePromptKind, item: {
+    path: string;
+    title?: string;
+    detail?: string;
+    markdown?: string;
+    sourceMarkdown?: string;
+}): string;
+export declare function parseMaintenanceJson(text: string): Record<string, unknown>;
+//# sourceMappingURL=prompts.d.ts.map

package/node_modules/@gyoungwe/pi-knowledge/dist/maintenance/prompts.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"prompts.d.ts","sourceRoot":"","sources":["../../src/maintenance/prompts.ts"],"names":[],"mappings":"AAAA,MAAM,MAAM,qBAAqB,GAAG,eAAe,GAAG,gBAAgB,GAAG,QAAQ,GAAG,UAAU,CAAC;AAE/F,wBAAgB,iBAAiB,CAChC,IAAI,EAAE,qBAAqB,EAC3B,IAAI,EAAE;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,KAAK,CAAC,EAAE,MAAM,CAAC;IAAC,MAAM,CAAC,EAAE,MAAM,CAAC;IAAC,QAAQ,CAAC,EAAE,MAAM,CAAC;IAAC,cAAc,CAAC,EAAE,MAAM,CAAA;CAAE,GACjG,MAAM,CAaR;AAED,wBAAgB,oBAAoB,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,CAK1E"}

package/node_modules/@gyoungwe/pi-knowledge/dist/maintenance/run.d.ts

@@ -0,0 +1,31 @@
+import type { MaintenanceItem } from "./plan.js";
+export interface MaintenanceRunResult {
+    readonly startedAt: string;
+    readonly processed: number;
+    readonly modelCalls: number;
+    readonly items: readonly {
+        id: string;
+        kind: string;
+        status: string;
+        reason?: string;
+    }[];
+}
+export interface MaintenancePorts {
+    readonly readNote: (path: string) => Promise<{
+        title?: string;
+        markdown: string;
+        sourceMarkdown?: string;
+        exists?: boolean;
+    }>;
+    readonly complete: (prompt: string, model?: string | null) => Promise<string>;
+    readonly model?: string | null;
+    readonly setTopic: (path: string, topic: string) => Promise<void>;
+    readonly proposeWiki: (item: MaintenanceItem, proposal: Record<string, unknown>) => Promise<void>;
+    readonly validateWikiLinks?: (proposal: Record<string, unknown>) => Promise<void>;
+    readonly budget?: {
+        readonly modelCalls: number;
+    };
+    readonly signal?: AbortSignal;
+}
+export declare function runMaintenance(items: readonly MaintenanceItem[], ports: MaintenancePorts): Promise<MaintenanceRunResult>;
+//# sourceMappingURL=run.d.ts.map

package/node_modules/@gyoungwe/pi-knowledge/dist/maintenance/run.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"run.d.ts","sourceRoot":"","sources":["../../src/maintenance/run.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,WAAW,CAAC;AAEjD,MAAM,WAAW,oBAAoB;IACpC,QAAQ,CAAC,SAAS,EAAE,MAAM,CAAC;IAC3B,QAAQ,CAAC,SAAS,EAAE,MAAM,CAAC;IAC3B,QAAQ,CAAC,UAAU,EAAE,MAAM,CAAC;IAC5B,QAAQ,CAAC,KAAK,EAAE,SAAS;QAAE,EAAE,EAAE,MAAM,CAAC;QAAC,IAAI,EAAE,MAAM,CAAC;QAAC,MAAM,EAAE,MAAM,CAAC;QAAC,MAAM,CAAC,EAAE,MAAM,CAAA;KAAE,EAAE,CAAC;CACzF;AAED,MAAM,WAAW,gBAAgB;IAChC,QAAQ,CAAC,QAAQ,EAAE,CAAC,IAAI,EAAE,MAAM,KAAK,OAAO,CAAC;QAC5C,KAAK,CAAC,EAAE,MAAM,CAAC;QACf,QAAQ,EAAE,MAAM,CAAC;QACjB,cAAc,CAAC,EAAE,MAAM,CAAC;QACxB,MAAM,CAAC,EAAE,OAAO,CAAC;KACjB,CAAC,CAAC;IACH,QAAQ,CAAC,QAAQ,EAAE,CAAC,MAAM,EAAE,MAAM,EAAE,KAAK,CAAC,EAAE,MAAM,GAAG,IAAI,KAAK,OAAO,CAAC,MAAM,CAAC,CAAC;IAC9E,QAAQ,CAAC,KAAK,CAAC,EAAE,MAAM,GAAG,IAAI,CAAC;IAC/B,QAAQ,CAAC,QAAQ,EAAE,CAAC,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,KAAK,OAAO,CAAC,IAAI,CAAC,CAAC;IAClE,QAAQ,CAAC,WAAW,EAAE,CAAC,IAAI,EAAE,eAAe,EAAE,QAAQ,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,KAAK,OAAO,CAAC,IAAI,CAAC,CAAC;IAClG,QAAQ,CAAC,iBAAiB,CAAC,EAAE,CAAC,QAAQ,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,KAAK,OAAO,CAAC,IAAI,CAAC,CAAC;IAClF,QAAQ,CAAC,MAAM,CAAC,EAAE;QAAE,QAAQ,CAAC,UAAU,EAAE,MAAM,CAAA;KAAE,CAAC;IAClD,QAAQ,CAAC,MAAM,CAAC,EAAE,WAAW,CAAC;CAC9B;AAED,wBAAsB,cAAc,CAAC,KAAK,EAAE,SAAS,eAAe,EAAE,EAAE,KAAK,EAAE,gBAAgB,GAAG,OAAO,CAAC,oBAAoB,CAAC,CAyD9H"}

package/node_modules/@gyoungwe/pi-knowledge/lib/knowledge/runtime/.knowledge-worker-manifest.json

@@ -0,0 +1,9 @@
+{
+	"version": 1,
+	"generator": "packages/pi-knowledge/scripts/build.mjs",
+	"output": "worker.mjs",
+	"source": "src/extension/knowledge-worker.ts",
+	"inputsSha256": "d6825afa4c77c708ddac99ccad22cca8479db2784f3617fd91ecc92dc8ea5b2a",
+	"knowledgeSourceSha256": "d6825afa4c77c708ddac99ccad22cca8479db2784f3617fd91ecc92dc8ea5b2a",
+	"outputSha256": "0ba2740573429c6de789f495f2cddf06cc3801dfb7ffeca70ac0aeb512c461d0"
+}

package/node_modules/@gyoungwe/pi-knowledge/lib/knowledge/runtime/worker.mjs

@@ -1,5 +1,6 @@
 // @ts-nocheck
-// packages/knowledge/src/worker.ts
+
+// src/core/worker.ts
 import { watch } from "node:fs";
 import { mkdir, readdir } from "node:fs/promises";
 import { dirname, join as join2 } from "node:path";
@@ -7,7 +8,7 @@ import { DatabaseSync } from "node:sqlite";
 import { setImmediate as yieldTurn } from "node:timers/promises";
 import { parentPort, workerData } from "node:worker_threads";
 
-// packages/knowledge/src/files.ts
+// src/core/files.ts
 import { createHash } from "node:crypto";
 import { constants } from "node:fs";
 import { lstat, open, realpath } from "node:fs/promises";
@@ -130,7 +131,7 @@ function snippet(text, { startLine = 1, maxChars = 5e3 } = {}) {
   };
 }
 
-// packages/knowledge/src/graph-retrieval.ts
+// src/core/graph-retrieval.ts
 function backlinkContext(body, target, max = 240) {
   const bare = target.split("/").at(-1)?.replace(/\.md$/, "") || target;
   const full = target.replace(/\.md$/, "");
@@ -146,12 +147,12 @@ function backlinkContext(body, target, max = 240) {
   return void 0;
 }
 
-// packages/knowledge/src/search-policy.ts
+// src/core/search-policy.ts
 function tokenizeKnowledgeText(text) {
   const words = String(text).normalize("NFKC").toLowerCase().match(/[a-z0-9][a-z0-9._+-]*|[\p{Script=Han}]+/gu) || [];
   const output = [];
   for (const word of words) {
-    if (/\p{Script=Han}/u.test(word)) {
+    if (new RegExp("\\p{Script=Han}", "u").test(word)) {
       const characters = [...word];
       for (let index = 0; index < characters.length; index++) {
         const character = characters[index];
@@ -180,7 +181,10 @@ function splitKnowledgeChunks(text, maxChars = 1200) {
   return chunks;
 }
 
-// packages/knowledge/src/ingest-frontmatter.ts
+// src/core/ingest-identity.ts
+import { createHash as createHash2 } from "node:crypto";
+
+// src/core/ingest-frontmatter.ts
 var KNOWLEDGE_TYPES = [
   "paper",
   "method",
@@ -412,7 +416,31 @@ function parseFrontmatter(text) {
   }
 }
 
-// packages/knowledge/src/semantic-model.ts
+// src/core/note-title.ts
+var clean = (value) => typeof value === "string" ? value.replace(/\s+/g, " ").trim().slice(0, 200) : "";
+function looksLikeFileName(title) {
+  const value = String(title || "").trim();
+  if (!value) return true;
+  if (/\.(?:pdf|html?|md|txt|docx?|xlsx?|csv|json|zip|tar|gz)$/i.test(value)) return true;
+  if (/^(?:PMC|PMID)?\d[\d.]*$/i.test(value)) return true;
+  return /^[a-z0-9]+(?:[-_][a-z0-9]+){2,}$/.test(value) && /\d{4,}|[a-f0-9]{12,}/.test(value);
+}
+function noteDisplayTitle(text, path) {
+  let data = null;
+  try {
+    data = parseFrontmatter(text).data;
+  } catch {
+    data = null;
+  }
+  const topic = clean(data?.topic);
+  if (topic) return topic;
+  const title = clean(data?.title);
+  const heading = clean(text.match(/^#\s+(.+)$/m)?.[1]);
+  if (title && (!heading || looksLikeFileName(heading))) return title;
+  return heading || title || path.split("/").at(-1)?.replace(/\.md$/i, "") || path;
+}
+
+// src/core/semantic-model.ts
 var WIDTH = 720;
 var HEIGHT = 440;
 var LAYOUT_MARGIN = 28;
@@ -726,7 +754,7 @@ function createSemanticModel(input, options = {}) {
   return { nodes, edges: linkRelations.map(({ source, target }) => ({ source, target })), relations, duplicates, communities, layout };
 }
 
-// packages/knowledge/src/graph-cache.ts
+// src/core/graph-cache.ts
 function createRevisionCache() {
   let activeRevision = null;
   const values = /* @__PURE__ */ new Map();
@@ -751,7 +779,40 @@ function createRevisionCache() {
   };
 }
 
-// packages/knowledge/src/worker.ts
+// src/core/recent-by-category.ts
+function noteCategory(row) {
+  const type = String(parseFrontmatter(row.body).data?.type || "").toLowerCase();
+  const value = `${type}/${row.path.toLowerCase()}`;
+  if (/paper|literature|文献|论文/.test(value)) return "paper";
+  if (/software|tool|软件/.test(value)) return "software";
+  if (/method|protocol|方法/.test(value)) return "method";
+  if (/idea|hypothes|想法|假设/.test(value)) return "idea";
+  return "other";
+}
+function recentByCategory(rows, limit = 10) {
+  const groups = {
+    paper: [],
+    software: [],
+    method: [],
+    idea: []
+  };
+  for (const row of rows) {
+    const category = noteCategory(row);
+    if (category === "other") continue;
+    groups[category].push({
+      path: row.path,
+      title: row.title,
+      kind: row.kind,
+      updatedAt: Number.parseFloat(String(row.signature).split(":", 1)[0]) || 0
+    });
+  }
+  const max = Math.max(1, Math.min(24, Math.floor(limit || 10)));
+  for (const key of Object.keys(groups))
+    groups[key] = groups[key].sort((left, right) => right.updatedAt - left.updatedAt || left.path.localeCompare(right.path)).slice(0, max);
+  return groups;
+}
+
+// src/core/worker.ts
 await mkdir(dirname(workerData.database), { recursive: true, mode: 448 });
 var db = new DatabaseSync(workerData.database, { timeout: 1500 });
 var priorSchemaVersion = Number(db.prepare("PRAGMA user_version").get().user_version ?? 0);
@@ -782,6 +843,26 @@ CREATE INDEX IF NOT EXISTS semantic_chunks_lookup ON semantic_chunks(fingerprint
 CREATE TABLE IF NOT EXISTS semantic_meta(fingerprint TEXT PRIMARY KEY, dimension INTEGER NOT NULL);
 `);
 if (priorSchemaVersion < 1) db.exec("PRAGMA user_version=1;");
+if (!db.prepare("SELECT value FROM meta WHERE key='titlePolicy'").get()) {
+  db.exec("BEGIN IMMEDIATE");
+  try {
+    const setTitle = db.prepare("UPDATE notes SET title=? WHERE id=?");
+    const setSearchTitle = db.prepare("UPDATE search SET title=? WHERE rowid=?");
+    let refreshed = 0;
+    for (const row of db.prepare("SELECT id,path,title,body FROM notes").all()) {
+      const title = noteDisplayTitle(row.body, row.path);
+      if (title === row.title) continue;
+      setTitle.run(title, row.id);
+      setSearchTitle.run(tokenizeKnowledgeText(title).join(" "), row.id);
+      refreshed++;
+    }
+    if (refreshed) db.prepare("UPDATE meta SET value=value+1 WHERE key='revision'").run();
+    db.prepare("INSERT OR REPLACE INTO meta VALUES('titlePolicy',1)").run();
+    db.exec("COMMIT");
+  } catch {
+    db.exec("ROLLBACK");
+  }
+}
 var semanticColumns = db.prepare("PRAGMA table_info(semantic_chunks)").all().map((column) => column.name);
 if (!semanticColumns.includes("start_char"))
   db.exec("ALTER TABLE semantic_chunks ADD COLUMN start_char INTEGER");
@@ -899,7 +980,7 @@ async function updatePath(path, force = false) {
         statements.clearProblem.run(path);
         return statements.get.get(path);
       }
-      const title = file.text.match(/^#\s+(.+)$/m)?.[1]?.trim() || path.split("/").at(-1).slice(0, -3);
+      const title = noteDisplayTitle(file.text, path);
       const kind = /(?:^|\/)(?:Index|Context|Home)\.md$/i.test(path) ? "navigation" : /(?:^|\/)Wiki\//.test(path) ? "wiki" : path.startsWith("Library/Explainers/") ? "explainer" : "note";
       db.exec("BEGIN IMMEDIATE");
       try {
@@ -1104,6 +1185,7 @@ function status() {
     pendingChanges: dirty.size,
     jobs: Number(db.prepare("SELECT count(*) count FROM jobs").get().count),
     problems: db.prepare("SELECT * FROM problems ORDER BY path LIMIT 20").all(),
+    categoryCounts: categoryCounts(),
     stats: { ...stats },
     semantic: {
       vectors: Number(db.prepare("SELECT count(*) count FROM semantic_chunks").get().count),
@@ -1111,6 +1193,21 @@ function status() {
     }
   };
 }
+function noteCategory2(row) {
+  const type = String(parseFrontmatter(row.body)?.data?.type || "").toLowerCase();
+  const value = `${type}/${String(row.path).toLowerCase()}`;
+  if (/paper|literature|文献|论文/.test(value)) return "paper";
+  if (/software|tool|软件/.test(value)) return "software";
+  if (/method|protocol|方法/.test(value)) return "method";
+  if (/idea|hypothes|想法|假设/.test(value)) return "idea";
+  return "other";
+}
+function categoryCounts() {
+  const counts = { paper: 0, software: 0, method: 0, idea: 0, other: 0 };
+  for (const row of db.prepare("SELECT path,body,kind FROM notes WHERE kind IN ('note','wiki')").all())
+    counts[noteCategory2(row)]++;
+  return counts;
+}
 function semanticStatus(fingerprint = null, project = null) {
   if (!fingerprint) return { vectors: 0, paths: 0, coverage: "unconfigured" };
   const scope = project || "";
@@ -1124,6 +1221,27 @@ function pending(project, limit = 20, kind = null) {
     "SELECT * FROM jobs WHERE (scope='shared' OR scope=?) AND (? IS NULL OR kind=?) ORDER BY updated DESC LIMIT ?"
   ).all(project || "", kind, kind, limit);
 }
+async function recentByCategory2(project, limit = 10) {
+  await flushDirty();
+  const scope = project || "";
+  const rows = db.prepare(
+    "SELECT path,title,kind,signature,body FROM notes WHERE (scope='shared' OR scope=?) AND kind IN ('note','wiki')"
+  ).all(scope);
+  return recentByCategory(rows, limit);
+}
+async function recentNotes(project, limit = 8) {
+  await flushDirty();
+  const scope = project || "";
+  const rows = db.prepare(
+    "SELECT path,title,kind,signature FROM notes WHERE (scope='shared' OR scope=?) AND kind IN ('note','wiki')"
+  ).all(scope);
+  return rows.map((row) => ({
+    path: row.path,
+    title: row.title,
+    kind: row.kind,
+    updatedAt: Number.parseFloat(String(row.signature).split(":", 1)[0]) || 0
+  })).sort((left, right) => right.updatedAt - left.updatedAt || left.path.localeCompare(right.path)).slice(0, Math.max(1, Math.min(24, Math.floor(limit || 8))));
+}
 async function read(path, project, options = {}) {
   if (!canRead(validateNote(path), project)) throw new Error("Note is outside shared/current-project scope");
   const row = await updatePath(path);
@@ -1467,7 +1585,7 @@ function noteIdentity(body) {
 async function knowledgeGraph(args) {
   await flushDirty();
   revision = Number(db.prepare("SELECT value FROM meta WHERE key='revision'").get().value);
-  const limit = Math.max(10, Math.min(400, Math.floor(args.limit || 200)));
+  const limit = Math.max(10, Math.min(5e3, Math.floor(args.limit || 200)));
   const view = args.view === "all" ? "all" : "semantic";
   const mergeMirrors = args.mergeMirrors !== false;
   const cacheKey = `${view}\0${limit}\0${mergeMirrors ? "merge" : "raw"}`;
@@ -1556,7 +1674,17 @@ async function knowledgeGraph(args) {
   const links = model.edges.filter(({ source, target }) => keep.has(source) && keep.has(target));
   const relations = (model.relations || []).filter(({ source, target }) => keep.has(source) && keep.has(target));
   const result = {
-    nodes: legacyChosen.map((path) => ({ path, title: notes.get(path).title, kind: notes.get(path).kind, degree: legacyDegree.get(path) || 0 })),
+    nodes: legacyChosen.map((path) => {
+      const row = notes.get(path);
+      const warnings = parseFrontmatter(row.body).warnings || [];
+      return {
+        path,
+        title: row.title,
+        kind: row.kind,
+        degree: legacyDegree.get(path) || 0,
+        ...warnings.length ? { warnings } : {}
+      };
+    }),
     edges: [...legacyEdges.values()].filter(([source, target]) => legacyKeep.has(source) && legacyKeep.has(target)).map(([source, target]) => ({ source, target })),
     totalNotes: notes.size,
     revision,
@@ -1639,6 +1767,8 @@ async function dispatch(op, args) {
     const items = db.prepare(`SELECT * FROM jobs WHERE ${where} ORDER BY updated DESC,key LIMIT ? OFFSET ?`).all(scope, limit, offset);
     return { items, total, offset, nextOffset: offset + items.length < total ? offset + items.length : null };
   }
+  if (op === "recentNotes") return { items: await recentNotes(args.project, args.limit), revision };
+  if (op === "recentByCategory") return { groups: await recentByCategory2(args.project, args.limit), revision };
   if (op === "jobs") return { ...status(), items: pending(args.project, 100, args.kind || null) };
   if (op === "completeJob") {
     db.prepare("DELETE FROM jobs WHERE key=? AND revision=?").run(args.key, args.revision);

package/node_modules/@gyoungwe/pi-knowledge/package.json

@@ -1,6 +1,6 @@
 {
 	"name": "@gyoungwe/pi-knowledge",
-	"version": "0.1.1",
+	"version": "0.2.0",
 	"description": "Knowledge and Vault tools for native Pi hosts",
 	"repository": {
 		"type": "git",
@@ -16,6 +16,18 @@
 	"license": "MIT",
 	"type": "module",
 	"main": "./dist/index.mjs",
+	"exports": {
+		".": {
+			"types": "./dist/host.d.ts",
+			"import": "./dist/index.mjs",
+			"default": "./dist/index.mjs"
+		},
+		"./host": {
+			"types": "./dist/host.d.ts",
+			"import": "./dist/host.mjs",
+			"default": "./dist/host.mjs"
+		}
+	},
 	"files": [
 		"dist",
 		"lib",
@@ -37,12 +49,18 @@
 		"build": "node scripts/build.mjs",
 		"build:check": "node scripts/build.mjs --check",
 		"smoke": "node scripts/smoke.mjs",
-		"typecheck": "tsc --noEmit"
+		"typecheck": "tsc -p tsconfig.json --noEmit",
+		"test": "vitest run"
+	},
+	"dependencies": {
+		"@gyoungwe/plugin-api": "^1.1.0"
 	},
 	"peerDependencies": {
 		"@earendil-works/pi-coding-agent": ">=1.1.0 <2.0.0"
 	},
 	"devDependencies": {
-		"typescript": "^5.9.0"
+		"esbuild": "0.25.12",
+		"typescript": "^5.9.0",
+		"vitest": "^3.2.0"
 	}
 }

package/node_modules/@gyoungwe/pi-knowledge/plugin.manifest.json

@@ -1,7 +1,7 @@
 {
   "schemaVersion": 1,
   "id": "drone-pi-knowledge",
-  "version": "0.1.1",
+  "version": "0.2.0",
   "pi": {
     "apiVersion": 1,
     "minHostVersion": "1.1.0",
@@ -14,9 +14,31 @@
   "entrypoints": {
     "extension": "./dist/index.mjs",
     "worker": "./lib/knowledge/runtime/worker.mjs",
+    "host": "./dist/host.mjs",
     "skills": "./skills"
   },
   "capabilities": ["knowledge", "search", "evidence-context"],
+  "tools": [
+    "knowledge_status",
+    "knowledge_search",
+    "research_prepare_knowledge",
+    "research_topics",
+    "research_resume_topic",
+    "research_read_knowledge",
+    "research_restore_evidence",
+    "research_search_knowledge",
+    "research_check_answer",
+    "research_task_status",
+    "research_search_explainers",
+    "research_knowledge_status",
+    "research_update_topic",
+    "research_archive_topic",
+    "research_maintain_knowledge",
+    "research_delegate_knowledge",
+    "research_archive_explainer",
+    "research_propose_wiki_update",
+    "research_wiki_review_status"
+  ],
   "hosts": ["native-pi", "drone-desktop"],
   "permissions": {
     "filesystem": ["workspace", "configured-vault"],

package/node_modules/@gyoungwe/pi-research/build-manifest.json

@@ -1,8 +1,8 @@
 {
 	"version": 1,
 	"generator": "scripts/build-pi-research.mjs",
-	"inputsSha256": "a1e5bc1dd88de128ebb5fb1349ecb901bed403cc6e4d0b39b1e107e770949fb1",
+	"inputsSha256": "10115caff8c1b9fde20ec9e1a01279da226cd0959bb74971275be666441a4059",
 	"outputs": {
-		"dist/index.mjs": "59c59e8767cfcfb4398f6b0b6d3d9fb4afc13b090708b21fc68752311a099ed3"
+		"dist/index.mjs": "c8e65a646f2fede4f3b5a43a215e5ccec87947a7e1b0a020d434a5e4d99d3eca"
 	}
 }