@gsep/core 0.8.0 → 1.0.0

package/dist/wrap/FileStorageAdapter.d.ts

@@ -0,0 +1,113 @@
+import type { StorageAdapter } from '../interfaces/StorageAdapter.js';
+import type { Genome, UserDNA, MutationLog, GeneRegistryEntry } from '../types/index.js';
+import type { SemanticFact } from '../memory/LayeredMemory.js';
+export interface FileStorageOptions {
+    dir?: string;
+    agentName?: string;
+    maxEntries?: number;
+}
+export declare class FileStorageAdapter implements StorageAdapter {
+    private readonly dir;
+    private readonly maxEntries;
+    private genomes;
+    private dna;
+    private mutations;
+    private interactions;
+    private feedbackRecords;
+    private facts;
+    private factIndex;
+    private geneRegistry;
+    private calibrationPoints;
+    constructor(options?: FileStorageOptions);
+    initialize(): Promise<void>;
+    private filePath;
+    private readJSON;
+    private writeJSON;
+    private loadAll;
+    private flushGenomes;
+    private flushDNA;
+    private flushMutations;
+    private flushInteractions;
+    private flushFeedback;
+    private flushFacts;
+    private flushGeneRegistry;
+    private flushCalibration;
+    private trimArray;
+    saveGenome(genome: Genome): Promise<void>;
+    loadGenome(genomeId: string): Promise<Genome | null>;
+    deleteGenome(genomeId: string): Promise<void>;
+    listGenomes(): Promise<Genome[]>;
+    saveDNA(userId: string, genomeId: string, dna: UserDNA): Promise<void>;
+    loadDNA(userId: string, genomeId: string): Promise<UserDNA | null>;
+    logMutation(mutation: MutationLog): Promise<void>;
+    getMutationHistory(genomeId: string, limit?: number): Promise<MutationLog[]>;
+    getGeneMutationHistory(genomeId: string, gene: string, limit?: number): Promise<MutationLog[]>;
+    recordInteraction(interaction: {
+        genomeId: string;
+        userId: string;
+        userMessage: string;
+        assistantResponse: string;
+        toolCalls: unknown[];
+        score?: number;
+        timestamp: Date;
+    }): Promise<void>;
+    getRecentInteractions(genomeId: string, userId: string, limit?: number): Promise<unknown[]>;
+    recordFeedback(feedback: {
+        genomeId: string;
+        userId: string;
+        gene: string;
+        sentiment: 'positive' | 'negative' | 'neutral';
+        timestamp: Date;
+    }): Promise<void>;
+    getAnalytics(genomeId: string): Promise<{
+        totalMutations: number;
+        totalInteractions: number;
+        avgFitnessImprovement: number;
+        userSatisfaction: number;
+        topGenes: Array<{
+            gene: string;
+            fitness: number;
+        }>;
+    }>;
+    saveFact(fact: SemanticFact, userId: string, genomeId: string): Promise<void>;
+    getFacts(userId: string, genomeId: string, includeExpired?: boolean): Promise<SemanticFact[]>;
+    getFact(factId: string): Promise<SemanticFact | null>;
+    updateFact(factId: string, updates: Partial<SemanticFact>): Promise<void>;
+    deleteFact(factId: string): Promise<void>;
+    deleteUserFacts(userId: string, genomeId: string): Promise<void>;
+    cleanExpiredFacts(userId: string, genomeId: string): Promise<number>;
+    saveToGeneRegistry(entry: GeneRegistryEntry): Promise<void>;
+    queryGeneRegistry(familyId: string, gene?: string, minFitness?: number): Promise<GeneRegistryEntry[]>;
+    getBestRegistryGene(familyId: string, gene: string): Promise<GeneRegistryEntry | null>;
+    saveCalibrationPoint(point: {
+        contextKey: string;
+        layer?: 0 | 1 | 2;
+        operator?: string;
+        taskType?: string;
+        threshold: number;
+        totalCandidates: number;
+        passedSandbox: number;
+        deployedSuccessfully: number;
+        rolledBack: number;
+        falsePositiveRate: number;
+        falseNegativeRate: number;
+        optimalThreshold: number;
+        timestamp: Date;
+    }): Promise<void>;
+    getCalibrationHistory(contextKey: string, limit?: number): Promise<Array<{
+        contextKey: string;
+        layer?: number;
+        operator?: string;
+        taskType?: string;
+        threshold: number;
+        totalCandidates: number;
+        passedSandbox: number;
+        deployedSuccessfully: number;
+        rolledBack: number;
+        falsePositiveRate: number;
+        falseNegativeRate: number;
+        optimalThreshold: number;
+        timestamp: Date;
+    }>>;
+}
+//# sourceMappingURL=FileStorageAdapter.d.ts.map

package/dist/wrap/FileStorageAdapter.d.ts.map

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package/dist/wrap/FileStorageAdapter.js

@@ -0,0 +1,239 @@
+import { mkdirSync, readFileSync, writeFileSync, existsSync } from 'node:fs';
+import { join } from 'node:path';
+import { homedir } from 'node:os';
+export class FileStorageAdapter {
+    dir;
+    maxEntries;
+    genomes = new Map();
+    dna = new Map();
+    mutations = [];
+    interactions = [];
+    feedbackRecords = [];
+    facts = new Map();
+    factIndex = new Map();
+    geneRegistry = [];
+    calibrationPoints = [];
+    constructor(options) {
+        const agentName = options?.agentName ?? 'default';
+        this.dir = options?.dir ?? join(homedir(), '.gsep', agentName);
+        this.maxEntries = options?.maxEntries ?? 10_000;
+    }
+    async initialize() {
+        mkdirSync(this.dir, { recursive: true });
+        this.loadAll();
+    }
+    filePath(name) {
+        return join(this.dir, `${name}.json`);
+    }
+    readJSON(name, fallback) {
+        const path = this.filePath(name);
+        if (!existsSync(path))
+            return fallback;
+        try {
+            return JSON.parse(readFileSync(path, 'utf-8'));
+        }
+        catch {
+            return fallback;
+        }
+    }
+    writeJSON(name, data) {
+        writeFileSync(this.filePath(name), JSON.stringify(data), 'utf-8');
+    }
+    loadAll() {
+        const genomeEntries = this.readJSON('genomes', []);
+        this.genomes = new Map(genomeEntries);
+        const dnaEntries = this.readJSON('dna', []);
+        this.dna = new Map(dnaEntries);
+        this.mutations = this.readJSON('mutations', []);
+        this.interactions = this.readJSON('interactions', []);
+        this.feedbackRecords = this.readJSON('feedback', []);
+        const factEntries = this.readJSON('facts', []);
+        this.facts = new Map(factEntries);
+        const indexEntries = this.readJSON('fact-index', []);
+        this.factIndex = new Map(indexEntries);
+        this.geneRegistry = this.readJSON('gene-registry', []);
+        this.calibrationPoints = this.readJSON('calibration', []);
+    }
+    flushGenomes() { this.writeJSON('genomes', Array.from(this.genomes.entries())); }
+    flushDNA() { this.writeJSON('dna', Array.from(this.dna.entries())); }
+    flushMutations() { this.writeJSON('mutations', this.mutations); }
+    flushInteractions() { this.writeJSON('interactions', this.interactions); }
+    flushFeedback() { this.writeJSON('feedback', this.feedbackRecords); }
+    flushFacts() {
+        this.writeJSON('facts', Array.from(this.facts.entries()));
+        this.writeJSON('fact-index', Array.from(this.factIndex.entries()));
+    }
+    flushGeneRegistry() { this.writeJSON('gene-registry', this.geneRegistry); }
+    flushCalibration() { this.writeJSON('calibration', this.calibrationPoints); }
+    trimArray(arr) {
+        if (arr.length > this.maxEntries) {
+            arr.splice(0, arr.length - this.maxEntries);
+        }
+    }
+    async saveGenome(genome) {
+        this.genomes.set(genome.id, structuredClone(genome));
+        this.flushGenomes();
+    }
+    async loadGenome(genomeId) {
+        const genome = this.genomes.get(genomeId);
+        return genome ? structuredClone(genome) : null;
+    }
+    async deleteGenome(genomeId) {
+        this.genomes.delete(genomeId);
+        this.flushGenomes();
+    }
+    async listGenomes() {
+        return Array.from(this.genomes.values()).map(g => structuredClone(g));
+    }
+    async saveDNA(userId, genomeId, dna) {
+        this.dna.set(`${userId}:${genomeId}`, structuredClone(dna));
+        this.flushDNA();
+    }
+    async loadDNA(userId, genomeId) {
+        const dna = this.dna.get(`${userId}:${genomeId}`);
+        return dna ? structuredClone(dna) : null;
+    }
+    async logMutation(mutation) {
+        this.mutations.push(structuredClone(mutation));
+        this.trimArray(this.mutations);
+        this.flushMutations();
+    }
+    async getMutationHistory(genomeId, limit = 100) {
+        return this.mutations
+            .filter(m => m.genomeId === genomeId)
+            .slice(-limit);
+    }
+    async getGeneMutationHistory(genomeId, gene, limit = 50) {
+        return this.mutations
+            .filter(m => m.genomeId === genomeId && m.gene === gene)
+            .slice(-limit);
+    }
+    async recordInteraction(interaction) {
+        this.interactions.push({ ...interaction });
+        this.trimArray(this.interactions);
+        this.flushInteractions();
+    }
+    async getRecentInteractions(genomeId, userId, limit = 20) {
+        return this.interactions
+            .filter(i => i.genomeId === genomeId && i.userId === userId)
+            .slice(-limit);
+    }
+    async recordFeedback(feedback) {
+        this.feedbackRecords.push({ ...feedback });
+        this.trimArray(this.feedbackRecords);
+        this.flushFeedback();
+    }
+    async getAnalytics(genomeId) {
+        const genomeMutations = this.mutations.filter(m => m.genomeId === genomeId);
+        const genomeInteractions = this.interactions.filter(i => i.genomeId === genomeId);
+        return {
+            totalMutations: genomeMutations.length,
+            totalInteractions: genomeInteractions.length,
+            avgFitnessImprovement: genomeMutations.length > 0
+                ? genomeMutations.reduce((sum, m) => sum + (m.fitnessDelta ?? 0), 0) / genomeMutations.length
+                : 0,
+            userSatisfaction: 0.7,
+            topGenes: [],
+        };
+    }
+    async saveFact(fact, userId, genomeId) {
+        this.facts.set(fact.id, structuredClone(fact));
+        const key = `${userId}:${genomeId}`;
+        const ids = this.factIndex.get(key) ?? [];
+        if (!ids.includes(fact.id))
+            ids.push(fact.id);
+        this.factIndex.set(key, ids);
+        this.flushFacts();
+    }
+    async getFacts(userId, genomeId, includeExpired = false) {
+        const key = `${userId}:${genomeId}`;
+        const ids = this.factIndex.get(key) ?? [];
+        const results = [];
+        for (const id of ids) {
+            const fact = this.facts.get(id);
+            if (fact) {
+                if (includeExpired || !fact.expiry || new Date(fact.expiry) > new Date()) {
+                    results.push(structuredClone(fact));
+                }
+            }
+        }
+        return results;
+    }
+    async getFact(factId) {
+        const fact = this.facts.get(factId);
+        return fact ? structuredClone(fact) : null;
+    }
+    async updateFact(factId, updates) {
+        const existing = this.facts.get(factId);
+        if (existing) {
+            this.facts.set(factId, { ...existing, ...updates });
+            this.flushFacts();
+        }
+    }
+    async deleteFact(factId) {
+        this.facts.delete(factId);
+        for (const [key, ids] of this.factIndex.entries()) {
+            const filtered = ids.filter(id => id !== factId);
+            if (filtered.length !== ids.length)
+                this.factIndex.set(key, filtered);
+        }
+        this.flushFacts();
+    }
+    async deleteUserFacts(userId, genomeId) {
+        const key = `${userId}:${genomeId}`;
+        const ids = this.factIndex.get(key) ?? [];
+        for (const id of ids)
+            this.facts.delete(id);
+        this.factIndex.delete(key);
+        this.flushFacts();
+    }
+    async cleanExpiredFacts(userId, genomeId) {
+        const key = `${userId}:${genomeId}`;
+        const ids = this.factIndex.get(key) ?? [];
+        let cleaned = 0;
+        const now = new Date();
+        const remaining = [];
+        for (const id of ids) {
+            const fact = this.facts.get(id);
+            if (fact?.expiry && new Date(fact.expiry) <= now) {
+                this.facts.delete(id);
+                cleaned++;
+            }
+            else {
+                remaining.push(id);
+            }
+        }
+        this.factIndex.set(key, remaining);
+        if (cleaned > 0)
+            this.flushFacts();
+        return cleaned;
+    }
+    async saveToGeneRegistry(entry) {
+        this.geneRegistry.push(structuredClone(entry));
+        this.trimArray(this.geneRegistry);
+        this.flushGeneRegistry();
+    }
+    async queryGeneRegistry(familyId, gene, minFitness = 0) {
+        return this.geneRegistry.filter(e => e.familyId === familyId &&
+            (!gene || e.gene === gene) &&
+            e.fitness >= minFitness);
+    }
+    async getBestRegistryGene(familyId, gene) {
+        const entries = await this.queryGeneRegistry(familyId, gene);
+        if (entries.length === 0)
+            return null;
+        return entries.sort((a, b) => b.fitness - a.fitness)[0];
+    }
+    async saveCalibrationPoint(point) {
+        this.calibrationPoints.push(structuredClone(point));
+        this.trimArray(this.calibrationPoints);
+        this.flushCalibration();
+    }
+    async getCalibrationHistory(contextKey, limit = 50) {
+        return this.calibrationPoints
+            .filter(p => p.contextKey === contextKey)
+            .sort((a, b) => new Date(b.timestamp).getTime() - new Date(a.timestamp).getTime())
+            .slice(0, limit);
+    }
+}
+//# sourceMappingURL=FileStorageAdapter.js.map

package/dist/wrap/FileStorageAdapter.js.map

@@ -0,0 +1 @@
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package/dist/wrap/SQLiteStorageAdapter.d.ts

@@ -0,0 +1,96 @@
+import type { StorageAdapter } from '../interfaces/StorageAdapter.js';
+import type { Genome, UserDNA, MutationLog, GeneRegistryEntry } from '../types/index.js';
+import type { SemanticFact } from '../memory/LayeredMemory.js';
+export interface SQLiteStorageOptions {
+    path?: string;
+    agentName?: string;
+    dir?: string;
+}
+export declare class SQLiteStorageAdapter implements StorageAdapter {
+    private db;
+    private readonly dbPath;
+    constructor(options?: SQLiteStorageOptions);
+    initialize(): Promise<void>;
+    private createTables;
+    close(): void;
+    getPath(): string;
+    saveGenome(genome: Genome): Promise<void>;
+    loadGenome(genomeId: string): Promise<Genome | null>;
+    deleteGenome(genomeId: string): Promise<void>;
+    listGenomes(): Promise<Genome[]>;
+    saveDNA(userId: string, genomeId: string, dna: UserDNA): Promise<void>;
+    loadDNA(userId: string, genomeId: string): Promise<UserDNA | null>;
+    logMutation(mutation: MutationLog): Promise<void>;
+    getMutationHistory(genomeId: string, limit?: number): Promise<MutationLog[]>;
+    getGeneMutationHistory(genomeId: string, gene: string, limit?: number): Promise<MutationLog[]>;
+    recordInteraction(interaction: {
+        genomeId: string;
+        userId: string;
+        userMessage: string;
+        assistantResponse: string;
+        toolCalls: unknown[];
+        score?: number;
+        timestamp: Date;
+    }): Promise<void>;
+    getRecentInteractions(genomeId: string, userId: string, limit?: number): Promise<unknown[]>;
+    recordFeedback(feedback: {
+        genomeId: string;
+        userId: string;
+        gene: string;
+        sentiment: 'positive' | 'negative' | 'neutral';
+        timestamp: Date;
+    }): Promise<void>;
+    getAnalytics(genomeId: string): Promise<{
+        totalMutations: number;
+        totalInteractions: number;
+        avgFitnessImprovement: number;
+        userSatisfaction: number;
+        topGenes: Array<{
+            gene: string;
+            fitness: number;
+        }>;
+    }>;
+    saveFact(fact: SemanticFact, userId: string, genomeId: string): Promise<void>;
+    getFacts(userId: string, genomeId: string, includeExpired?: boolean): Promise<SemanticFact[]>;
+    getFact(factId: string): Promise<SemanticFact | null>;
+    updateFact(factId: string, updates: Partial<SemanticFact>): Promise<void>;
+    deleteFact(factId: string): Promise<void>;
+    deleteUserFacts(userId: string, genomeId: string): Promise<void>;
+    cleanExpiredFacts(userId: string, genomeId: string): Promise<number>;
+    saveToGeneRegistry(entry: GeneRegistryEntry): Promise<void>;
+    queryGeneRegistry(familyId: string, gene?: string, minFitness?: number): Promise<GeneRegistryEntry[]>;
+    getBestRegistryGene(familyId: string, gene: string): Promise<GeneRegistryEntry | null>;
+    saveCalibrationPoint(point: {
+        contextKey: string;
+        layer?: 0 | 1 | 2;
+        operator?: string;
+        taskType?: string;
+        threshold: number;
+        totalCandidates: number;
+        passedSandbox: number;
+        deployedSuccessfully: number;
+        rolledBack: number;
+        falsePositiveRate: number;
+        falseNegativeRate: number;
+        optimalThreshold: number;
+        timestamp: Date;
+    }): Promise<void>;
+    getCalibrationHistory(contextKey: string, limit?: number): Promise<Array<{
+        contextKey: string;
+        layer?: number;
+        operator?: string;
+        taskType?: string;
+        threshold: number;
+        totalCandidates: number;
+        passedSandbox: number;
+        deployedSuccessfully: number;
+        rolledBack: number;
+        falsePositiveRate: number;
+        falseNegativeRate: number;
+        optimalThreshold: number;
+        timestamp: Date;
+    }>>;
+    saveSecurityStats(stats: Record<string, unknown>): void;
+    loadSecurityStats(): Record<string, unknown> | null;
+}
+//# sourceMappingURL=SQLiteStorageAdapter.d.ts.map

package/dist/wrap/SQLiteStorageAdapter.d.ts.map

@@ -0,0 +1 @@
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