@graphty/layout 1.3.2 → 1.5.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +7 -6
- package/dist/layout.js +41 -33
- package/dist/layout.js.map +1 -1
- package/dist/src/algorithms/index.d.ts +1 -0
- package/dist/src/algorithms/index.d.ts.map +1 -0
- package/dist/src/algorithms/optimization/index.d.ts +1 -0
- package/dist/src/algorithms/optimization/index.d.ts.map +1 -0
- package/dist/src/algorithms/optimization/kamada-kawai-solver.d.ts +2 -1
- package/dist/src/algorithms/optimization/kamada-kawai-solver.d.ts.map +1 -0
- package/dist/src/algorithms/optimization/kamada-kawai-solver.js.map +1 -1
- package/dist/src/algorithms/optimization/lbfgs.d.ts +3 -2
- package/dist/src/algorithms/optimization/lbfgs.d.ts.map +1 -0
- package/dist/src/algorithms/optimization/lbfgs.js +2 -2
- package/dist/src/algorithms/optimization/lbfgs.js.map +1 -1
- package/dist/src/algorithms/optimization/line-search.d.ts +1 -0
- package/dist/src/algorithms/optimization/line-search.d.ts.map +1 -0
- package/dist/src/algorithms/optimization/types.d.ts +1 -0
- package/dist/src/algorithms/optimization/types.d.ts.map +1 -0
- package/dist/src/algorithms/planarity/check.d.ts +3 -2
- package/dist/src/algorithms/planarity/check.d.ts.map +1 -0
- package/dist/src/algorithms/planarity/check.js +2 -2
- package/dist/src/algorithms/planarity/check.js.map +1 -1
- package/dist/src/algorithms/planarity/embedding.d.ts +3 -2
- package/dist/src/algorithms/planarity/embedding.d.ts.map +1 -0
- package/dist/src/algorithms/planarity/embedding.js +2 -2
- package/dist/src/algorithms/planarity/embedding.js.map +1 -1
- package/dist/src/algorithms/planarity/index.d.ts +1 -0
- package/dist/src/algorithms/planarity/index.d.ts.map +1 -0
- package/dist/src/algorithms/planarity/lr-test.d.ts +1 -0
- package/dist/src/algorithms/planarity/lr-test.d.ts.map +1 -0
- package/dist/src/algorithms/planarity/special-graphs.d.ts +1 -0
- package/dist/src/algorithms/planarity/special-graphs.d.ts.map +1 -0
- package/dist/src/algorithms/planarity/special-graphs.js.map +1 -1
- package/dist/src/generators/basic.d.ts +1 -0
- package/dist/src/generators/basic.d.ts.map +1 -0
- package/dist/src/generators/bipartite.d.ts +1 -0
- package/dist/src/generators/bipartite.d.ts.map +1 -0
- package/dist/src/generators/bipartite.js.map +1 -1
- package/dist/src/generators/grid.d.ts +1 -0
- package/dist/src/generators/grid.d.ts.map +1 -0
- package/dist/src/generators/index.d.ts +1 -0
- package/dist/src/generators/index.d.ts.map +1 -0
- package/dist/src/generators/random.d.ts +1 -0
- package/dist/src/generators/random.d.ts.map +1 -0
- package/dist/src/generators/random.js.map +1 -1
- package/dist/src/generators/scale-free.d.ts +1 -0
- package/dist/src/generators/scale-free.d.ts.map +1 -0
- package/dist/src/generators/scale-free.js.map +1 -1
- package/dist/src/index.d.ts +1 -0
- package/dist/src/index.d.ts.map +1 -0
- package/dist/src/layouts/basic/index.d.ts +1 -0
- package/dist/src/layouts/basic/index.d.ts.map +1 -0
- package/dist/src/layouts/basic/random.d.ts +1 -0
- package/dist/src/layouts/basic/random.d.ts.map +1 -0
- package/dist/src/layouts/basic/random.js +1 -1
- package/dist/src/layouts/basic/random.js.map +1 -1
- package/dist/src/layouts/force-directed/arf.d.ts +1 -0
- package/dist/src/layouts/force-directed/arf.d.ts.map +1 -0
- package/dist/src/layouts/force-directed/arf.js.map +1 -1
- package/dist/src/layouts/force-directed/forceatlas2.d.ts +3 -2
- package/dist/src/layouts/force-directed/forceatlas2.d.ts.map +1 -0
- package/dist/src/layouts/force-directed/forceatlas2.js +31 -22
- package/dist/src/layouts/force-directed/forceatlas2.js.map +1 -1
- package/dist/src/layouts/force-directed/fruchterman-reingold.d.ts +2 -1
- package/dist/src/layouts/force-directed/fruchterman-reingold.d.ts.map +1 -0
- package/dist/src/layouts/force-directed/fruchterman-reingold.js +1 -1
- package/dist/src/layouts/force-directed/fruchterman-reingold.js.map +1 -1
- package/dist/src/layouts/force-directed/index.d.ts +1 -0
- package/dist/src/layouts/force-directed/index.d.ts.map +1 -0
- package/dist/src/layouts/force-directed/kamada-kawai.d.ts +2 -1
- package/dist/src/layouts/force-directed/kamada-kawai.d.ts.map +1 -0
- package/dist/src/layouts/force-directed/kamada-kawai.js +1 -1
- package/dist/src/layouts/force-directed/kamada-kawai.js.map +1 -1
- package/dist/src/layouts/force-directed/spring.d.ts +1 -0
- package/dist/src/layouts/force-directed/spring.d.ts.map +1 -0
- package/dist/src/layouts/geometric/circular.d.ts +1 -0
- package/dist/src/layouts/geometric/circular.d.ts.map +1 -0
- package/dist/src/layouts/geometric/circular.js +1 -1
- package/dist/src/layouts/geometric/circular.js.map +1 -1
- package/dist/src/layouts/geometric/index.d.ts +1 -0
- package/dist/src/layouts/geometric/index.d.ts.map +1 -0
- package/dist/src/layouts/geometric/shell.d.ts +1 -0
- package/dist/src/layouts/geometric/shell.d.ts.map +1 -0
- package/dist/src/layouts/geometric/shell.js +1 -1
- package/dist/src/layouts/geometric/shell.js.map +1 -1
- package/dist/src/layouts/geometric/spiral.d.ts +2 -1
- package/dist/src/layouts/geometric/spiral.d.ts.map +1 -0
- package/dist/src/layouts/geometric/spiral.js +1 -1
- package/dist/src/layouts/geometric/spiral.js.map +1 -1
- package/dist/src/layouts/hierarchical/bfs.d.ts +1 -0
- package/dist/src/layouts/hierarchical/bfs.d.ts.map +1 -0
- package/dist/src/layouts/hierarchical/bfs.js +1 -1
- package/dist/src/layouts/hierarchical/bfs.js.map +1 -1
- package/dist/src/layouts/hierarchical/bipartite.d.ts +1 -0
- package/dist/src/layouts/hierarchical/bipartite.d.ts.map +1 -0
- package/dist/src/layouts/hierarchical/bipartite.js +1 -1
- package/dist/src/layouts/hierarchical/bipartite.js.map +1 -1
- package/dist/src/layouts/hierarchical/index.d.ts +1 -0
- package/dist/src/layouts/hierarchical/index.d.ts.map +1 -0
- package/dist/src/layouts/hierarchical/multipartite.d.ts +1 -0
- package/dist/src/layouts/hierarchical/multipartite.d.ts.map +1 -0
- package/dist/src/layouts/hierarchical/multipartite.js +2 -2
- package/dist/src/layouts/hierarchical/multipartite.js.map +1 -1
- package/dist/src/layouts/index.d.ts +1 -0
- package/dist/src/layouts/index.d.ts.map +1 -0
- package/dist/src/layouts/specialized/index.d.ts +1 -0
- package/dist/src/layouts/specialized/index.d.ts.map +1 -0
- package/dist/src/layouts/specialized/planar.d.ts +2 -1
- package/dist/src/layouts/specialized/planar.d.ts.map +1 -0
- package/dist/src/layouts/specialized/planar.js +1 -1
- package/dist/src/layouts/specialized/planar.js.map +1 -1
- package/dist/src/layouts/specialized/spectral.d.ts +2 -1
- package/dist/src/layouts/specialized/spectral.d.ts.map +1 -0
- package/dist/src/layouts/specialized/spectral.js +1 -1
- package/dist/src/layouts/specialized/spectral.js.map +1 -1
- package/dist/src/types/embedding.d.ts +1 -0
- package/dist/src/types/embedding.d.ts.map +1 -0
- package/dist/src/types/graph.d.ts +2 -1
- package/dist/src/types/graph.d.ts.map +1 -0
- package/dist/src/types/index.d.ts +1 -0
- package/dist/src/types/index.d.ts.map +1 -0
- package/dist/src/types/layout.d.ts +1 -0
- package/dist/src/types/layout.d.ts.map +1 -0
- package/dist/src/utils/graph.d.ts +1 -0
- package/dist/src/utils/graph.d.ts.map +1 -0
- package/dist/src/utils/index.d.ts +1 -0
- package/dist/src/utils/index.d.ts.map +1 -0
- package/dist/src/utils/numpy.d.ts +5 -4
- package/dist/src/utils/numpy.d.ts.map +1 -0
- package/dist/src/utils/numpy.js.map +1 -1
- package/dist/src/utils/params.d.ts +1 -0
- package/dist/src/utils/params.d.ts.map +1 -0
- package/dist/src/utils/random.d.ts +1 -0
- package/dist/src/utils/random.d.ts.map +1 -0
- package/dist/src/utils/random.js.map +1 -1
- package/dist/src/utils/rescale.d.ts +1 -0
- package/dist/src/utils/rescale.d.ts.map +1 -0
- package/dist/src/utils/rescale.js.map +1 -1
- package/dist/tsconfig.tsbuildinfo +1 -0
- package/package.json +10 -14
- package/src/algorithms/optimization/kamada-kawai-solver.ts +6 -6
- package/src/algorithms/optimization/lbfgs.ts +2 -2
- package/src/algorithms/planarity/check.ts +2 -2
- package/src/algorithms/planarity/embedding.ts +3 -3
- package/src/algorithms/planarity/special-graphs.ts +1 -1
- package/src/generators/bipartite.ts +1 -1
- package/src/generators/random.ts +1 -1
- package/src/generators/scale-free.ts +3 -3
- package/src/layouts/basic/random.ts +1 -1
- package/src/layouts/force-directed/arf.ts +1 -1
- package/src/layouts/force-directed/forceatlas2.ts +58 -50
- package/src/layouts/force-directed/fruchterman-reingold.ts +2 -2
- package/src/layouts/force-directed/kamada-kawai.ts +2 -3
- package/src/layouts/geometric/circular.ts +1 -1
- package/src/layouts/geometric/shell.ts +1 -1
- package/src/layouts/geometric/spiral.ts +3 -3
- package/src/layouts/hierarchical/bfs.ts +2 -2
- package/src/layouts/hierarchical/bipartite.ts +1 -1
- package/src/layouts/hierarchical/multipartite.ts +3 -3
- package/src/layouts/specialized/planar.ts +2 -2
- package/src/layouts/specialized/spectral.ts +11 -11
- package/src/types/graph.ts +1 -1
- package/src/utils/numpy.ts +11 -11
- package/src/utils/random.ts +2 -2
- package/src/utils/rescale.ts +2 -2
- package/dist/vitest.config.d.ts +0 -2
- package/dist/vitest.config.js +0 -30
- package/dist/vitest.config.js.map +0 -1
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@@ -24,7 +24,7 @@ export function planarLayout(G, scale = 1, center = null, dim = 2, seed = null)
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throw new Error("Planar layout requires a Graph with edges, not just a list of nodes");
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}
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const graph = processed.G;
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center = processed
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({ center } = processed);
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const nodes = getNodesFromGraph(graph);
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const edges = getEdgesFromGraph(graph);
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if (nodes.length === 0) {
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@@ -1 +1 @@
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-
{"version":3,"file":"planar.js","sourceRoot":"","sources":["../../../../src/layouts/specialized/planar.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,EAAE,cAAc,EAAE,2BAA2B,EAAE,MAAM,4BAA4B,CAAC;AAEzF,OAAO,EAAE,iBAAiB,EAAC,iBAAiB,EAAE,MAAM,mBAAmB,CAAC;AACxE,OAAO,EAAE,cAAc,EAAE,MAAM,oBAAoB,CAAC;AACpD,OAAO,EAAE,aAAa,EAAE,MAAM,qBAAqB,CAAC;AAEpD;;;;;;;;GAQG;AACH,MAAM,UAAU,YAAY,CACxB,CAAQ,EACR,QAAgB,CAAC,EACjB,SAA0B,IAAI,EAC9B,MAAc,CAAC,EACf,OAAsB,IAAI;IAE1B,IAAI,GAAG,KAAK,CAAC,EAAE,CAAC;QACZ,MAAM,IAAI,KAAK,CAAC,8BAA8B,CAAC,CAAC;IACpD,CAAC;IAED,MAAM,SAAS,GAAG,cAAc,CAAC,CAAC,EAAE,MAAM,IAAI,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC;IAE3D,kEAAkE;IAClE,IAAI,KAAK,CAAC,OAAO,CAAC,SAAS,CAAC,CAAC,CAAC,EAAE,CAAC;QAC7B,MAAM,IAAI,KAAK,CAAC,qEAAqE,CAAC,CAAC;IAC3F,CAAC;IAED,MAAM,KAAK,GAAG,SAAS,CAAC,CAAC,CAAC;IAC1B,MAAM,GAAG,SAAS,CAAC,
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{"version":3,"file":"planar.js","sourceRoot":"","sources":["../../../../src/layouts/specialized/planar.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,EAAE,cAAc,EAAE,2BAA2B,EAAE,MAAM,4BAA4B,CAAC;AAEzF,OAAO,EAAE,iBAAiB,EAAC,iBAAiB,EAAE,MAAM,mBAAmB,CAAC;AACxE,OAAO,EAAE,cAAc,EAAE,MAAM,oBAAoB,CAAC;AACpD,OAAO,EAAE,aAAa,EAAE,MAAM,qBAAqB,CAAC;AAEpD;;;;;;;;GAQG;AACH,MAAM,UAAU,YAAY,CACxB,CAAQ,EACR,QAAgB,CAAC,EACjB,SAA0B,IAAI,EAC9B,MAAc,CAAC,EACf,OAAsB,IAAI;IAE1B,IAAI,GAAG,KAAK,CAAC,EAAE,CAAC;QACZ,MAAM,IAAI,KAAK,CAAC,8BAA8B,CAAC,CAAC;IACpD,CAAC;IAED,MAAM,SAAS,GAAG,cAAc,CAAC,CAAC,EAAE,MAAM,IAAI,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC;IAE3D,kEAAkE;IAClE,IAAI,KAAK,CAAC,OAAO,CAAC,SAAS,CAAC,CAAC,CAAC,EAAE,CAAC;QAC7B,MAAM,IAAI,KAAK,CAAC,qEAAqE,CAAC,CAAC;IAC3F,CAAC;IAED,MAAM,KAAK,GAAG,SAAS,CAAC,CAAC,CAAC;IAC1B,CAAC,EAAE,MAAM,EAAE,GAAG,SAAS,CAAC,CAAC;IAEzB,MAAM,KAAK,GAAG,iBAAiB,CAAC,KAAK,CAAC,CAAC;IACvC,MAAM,KAAK,GAAG,iBAAiB,CAAC,KAAK,CAAC,CAAC;IAEvC,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QACrB,OAAO,EAAE,CAAC;IACd,CAAC;IAED,6CAA6C;IAC7C,MAAM,EAAE,QAAQ,EAAE,SAAS,EAAE,GAAG,cAAc,CAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,IAAI,CAAC,CAAC;IAE1E,IAAI,CAAC,QAAQ,EAAE,CAAC;QACZ,MAAM,IAAI,KAAK,CAAC,kBAAkB,CAAC,CAAC;IACxC,CAAC;IAED,IAAI,CAAC,SAAS,EAAE,CAAC;QACb,MAAM,IAAI,KAAK,CAAC,sCAAsC,CAAC,CAAC;IAC5D,CAAC;IAED,iCAAiC;IACjC,IAAI,GAAG,GAAG,2BAA2B,CAAC,SAAS,EAAE,KAAK,CAAC,CAAC;IAExD,wBAAwB;IACxB,GAAG,GAAG,aAAa,CAAC,GAAG,EAAE,KAAK,EAAE,MAAM,CAAgB,CAAC;IAEvD,OAAO,GAAG,CAAC;AACf,CAAC"}
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/**
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* Spectral layout algorithm using eigenvectors of the graph Laplacian
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*/
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import { Graph, PositionMap } from "../../types";
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import type { Graph, PositionMap } from "../../types";
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/**
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* Position nodes in a spectral layout using eigenvectors of the graph Laplacian.
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* @param G - Graph
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* @returns Positions dictionary keyed by node
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*/
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export declare function spectralLayout(G: Graph, scale?: number, center?: number[] | null, dim?: number): PositionMap;
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//# sourceMappingURL=spectral.d.ts.map
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{"version":3,"file":"spectral.d.ts","sourceRoot":"","sources":["../../../../src/layouts/specialized/spectral.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,KAAK,EAAE,KAAK,EAAQ,WAAW,EAAE,MAAM,aAAa,CAAC;AAK5D;;;;;;;GAOG;AACH,wBAAgB,cAAc,CAC1B,CAAC,EAAE,KAAK,EACR,KAAK,GAAE,MAAU,EACjB,MAAM,GAAE,MAAM,EAAE,GAAG,IAAW,EAC9B,GAAG,GAAE,MAAU,GAChB,WAAW,CAoHb"}
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export function spectralLayout(G, scale = 1, center = null, dim = 2) {
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const processed = _processParams(G, center, dim);
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const graph = processed.G;
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center = processed
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({ center } = processed);
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const nodes = getNodesFromGraph(graph);
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if (nodes.length <= 2) {
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{"version":3,"file":"spectral.js","sourceRoot":"","sources":["../../../../src/layouts/specialized/spectral.ts"],"names":[],"mappings":"AAAA;;GAEG;AAGH,OAAO,EAAE,iBAAiB,EAAC,iBAAiB,EAAE,MAAM,mBAAmB,CAAC;AACxE,OAAO,EAAE,cAAc,EAAE,MAAM,oBAAoB,CAAC;AACpD,OAAO,EAAE,aAAa,EAAE,MAAM,qBAAqB,CAAC;AAEpD;;;;;;;GAOG;AACH,MAAM,UAAU,cAAc,CAC1B,CAAQ,EACR,QAAgB,CAAC,EACjB,SAA0B,IAAI,EAC9B,MAAc,CAAC;IAEf,MAAM,SAAS,GAAG,cAAc,CAAC,CAAC,EAAE,MAAM,EAAE,GAAG,CAAC,CAAC;IACjD,MAAM,KAAK,GAAG,SAAS,CAAC,CAAC,CAAC;IAC1B,MAAM,GAAG,SAAS,CAAC,
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@@ -0,0 +1 @@
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1
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+
{"version":3,"file":"embedding.d.ts","sourceRoot":"","sources":["../../../src/types/embedding.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,EAAE,IAAI,EAAE,QAAQ,EAAE,MAAM,SAAS,CAAC;AAEzC,MAAM,WAAW,SAAS;IACtB,SAAS,EAAE,IAAI,EAAE,CAAC;IAClB,QAAQ,EAAE,IAAI,EAAE,EAAE,CAAC;IACnB,aAAa,EAAE,MAAM,CAAC,IAAI,EAAE,QAAQ,CAAC,CAAC;CACzC"}
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@@ -6,5 +6,6 @@ export type Edge = [Node, Node];
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6
6
|
export type Graph = {
|
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7
7
|
nodes: () => Node[];
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8
8
|
edges: () => Edge[];
|
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9
|
-
getEdgeData?: (source: Node, target: Node, attr: string) =>
|
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9
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+
getEdgeData?: (source: Node, target: Node, attr: string) => number | undefined;
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|
};
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11
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+
//# sourceMappingURL=graph.d.ts.map
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@@ -0,0 +1 @@
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1
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+
{"version":3,"file":"graph.d.ts","sourceRoot":"","sources":["../../../src/types/graph.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,MAAM,MAAM,IAAI,GAAG,MAAM,GAAG,MAAM,CAAC;AAEnC,MAAM,MAAM,IAAI,GAAG,CAAC,IAAI,EAAE,IAAI,CAAC,CAAC;AAEhC,MAAM,MAAM,KAAK,GAAG;IAChB,KAAK,EAAE,MAAM,IAAI,EAAE,CAAC;IACpB,KAAK,EAAE,MAAM,IAAI,EAAE,CAAC;IACpB,WAAW,CAAC,EAAE,CAAC,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,IAAI,EAAE,MAAM,KAAK,MAAM,GAAG,SAAS,CAAC;CAClF,CAAC"}
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@@ -0,0 +1 @@
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1
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+
{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/types/index.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,cAAc,aAAa,CAAC;AAC5B,cAAc,SAAS,CAAC;AACxB,cAAc,UAAU,CAAC"}
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@@ -0,0 +1 @@
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1
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+
{"version":3,"file":"layout.d.ts","sourceRoot":"","sources":["../../../src/types/layout.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,EAAE,IAAI,EAAE,MAAM,SAAS,CAAC;AAE/B,MAAM,MAAM,QAAQ,GAAG,MAAM,EAAE,CAAC;AAEhC,MAAM,MAAM,WAAW,GAAG,MAAM,CAAC,IAAI,EAAE,QAAQ,CAAC,CAAC"}
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@@ -0,0 +1 @@
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|
1
|
+
{"version":3,"file":"graph.d.ts","sourceRoot":"","sources":["../../../src/utils/graph.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,EAAE,IAAI,EAAC,KAAK,EAAE,IAAI,EAAE,MAAM,UAAU,CAAC;AAE5C;;;;GAIG;AACH,wBAAgB,iBAAiB,CAAC,CAAC,EAAE,KAAK,GAAG,IAAI,EAAE,GAAG,IAAI,EAAE,CAK3D;AAED;;;;GAIG;AACH,wBAAgB,iBAAiB,CAAC,CAAC,EAAE,KAAK,GAAG,IAAI,EAAE,GAAG,IAAI,EAAE,CAK3D;AAED;;;;;GAKG;AACH,wBAAgB,aAAa,CAAC,KAAK,EAAE,KAAK,EAAE,IAAI,EAAE,IAAI,GAAG,MAAM,CAa9D;AAED;;;;;GAKG;AACH,wBAAgB,YAAY,CAAC,KAAK,EAAE,KAAK,EAAE,IAAI,EAAE,IAAI,GAAG,IAAI,EAAE,CAe7D"}
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@@ -0,0 +1 @@
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1
|
+
{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/utils/index.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,cAAc,SAAS,CAAC;AACxB,cAAc,SAAS,CAAC;AACxB,cAAc,UAAU,CAAC;AACzB,cAAc,UAAU,CAAC;AACzB,cAAc,WAAW,CAAC"}
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@@ -3,11 +3,11 @@
|
|
|
3
3
|
* Maintains exact same functionality as original implementation
|
|
4
4
|
*/
|
|
5
5
|
export declare const np: {
|
|
6
|
-
zeros: (shape: number | number[]) => number
|
|
7
|
-
ones: (shape: number | number[]) => number |
|
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6
|
+
zeros: (shape: number | number[]) => number[] | number[][];
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7
|
+
ones: (shape: number | number[]) => number[] | number[][];
|
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8
8
|
linspace: (start: number, stop: number, num: number) => number[];
|
|
9
|
-
array: (arr:
|
|
10
|
-
repeat: (a:
|
|
9
|
+
array: (arr: number | number[]) => number[];
|
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10
|
+
repeat: (a: number | number[], repeats: number) => number[];
|
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11
11
|
mean: (arr: number[] | number[][], axis?: number | null) => number | number[];
|
|
12
12
|
add: (a: number | number[], b: number | number[]) => number | number[];
|
|
13
13
|
subtract: (a: number | number[], b: number | number[]) => number | number[];
|
|
@@ -15,3 +15,4 @@ export declare const np: {
|
|
|
15
15
|
min: (arr: number | number[]) => number;
|
|
16
16
|
norm: (arr: number[]) => number;
|
|
17
17
|
};
|
|
18
|
+
//# sourceMappingURL=numpy.d.ts.map
|
|
@@ -0,0 +1 @@
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|
|
1
|
+
{"version":3,"file":"numpy.d.ts","sourceRoot":"","sources":["../../../src/utils/numpy.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,eAAO,MAAM,EAAE;mBACa,MAAM,GAAG,MAAM,EAAE,KAAG,MAAM,EAAE,GAAG,MAAM,EAAE,EAAE;kBAY1C,MAAM,GAAG,MAAM,EAAE,KAAG,MAAM,EAAE,GAAG,MAAM,EAAE,EAAE;sBAYrC,MAAM,QAAQ,MAAM,OAAO,MAAM,KAAG,MAAM,EAAE;iBAQjD,MAAM,GAAG,MAAM,EAAE,KAAG,MAAM,EAAE;gBAI7B,MAAM,GAAG,MAAM,EAAE,WAAW,MAAM,KAAG,MAAM,EAAE;gBAQ7C,MAAM,EAAE,GAAG,MAAM,EAAE,EAAE,SAAQ,MAAM,GAAG,IAAI,KAAU,MAAM,GAAG,MAAM,EAAE;aAyBxE,MAAM,GAAG,MAAM,EAAE,KAAK,MAAM,GAAG,MAAM,EAAE,KAAG,MAAM,GAAG,MAAM,EAAE;kBAatD,MAAM,GAAG,MAAM,EAAE,KAAK,MAAM,GAAG,MAAM,EAAE,KAAG,MAAM,GAAG,MAAM,EAAE;eAa9D,MAAM,GAAG,MAAM,EAAE,KAAG,MAAM;eAK1B,MAAM,GAAG,MAAM,EAAE,KAAG,MAAM;gBAKzB,MAAM,EAAE,KAAG,MAAM;CAGzC,CAAC"}
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"numpy.js","sourceRoot":"","sources":["../../../src/utils/numpy.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,MAAM,CAAC,MAAM,EAAE,GAAG;IACd,KAAK,EAAE,UAAU,KAAwB;QACrC,IAAI,OAAO,KAAK,KAAK,QAAQ,EAAE,CAAC;YAC5B,OAAO,KAAK,CAAC,KAAK,CAAC,CAAC,IAAI,CAAC,CAAC,
|
|
1
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+
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package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@graphty/layout",
|
|
3
|
-
"version": "1.
|
|
3
|
+
"version": "1.5.0",
|
|
4
4
|
"description": "graph layout algorithms based on networkx",
|
|
5
5
|
"author": "Adam Powers <apowers@ato.ms>",
|
|
6
6
|
"main": "dist/layout.js",
|
|
@@ -46,17 +46,7 @@
|
|
|
46
46
|
"path": "./node_modules/cz-conventional-changelog"
|
|
47
47
|
}
|
|
48
48
|
},
|
|
49
|
-
"devDependencies": {
|
|
50
|
-
"@semantic-release/changelog": "^6.0.3",
|
|
51
|
-
"@semantic-release/git": "^10.0.1",
|
|
52
|
-
"@vitest/coverage-v8": "^3.2.4",
|
|
53
|
-
"@vitest/ui": "^3.2.4",
|
|
54
|
-
"happy-dom": "^18.0.1",
|
|
55
|
-
"semantic-release": "^24.2.7",
|
|
56
|
-
"typescript": "^5.3.3",
|
|
57
|
-
"vite": "^7.0.5",
|
|
58
|
-
"vitest": "^3.2.4"
|
|
59
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-
},
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+
"devDependencies": {},
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"scripts": {
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"test": "vitest",
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"test:ui": "vitest --ui",
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@@ -64,7 +54,7 @@
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54
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"test:coverage": "vitest run --coverage",
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65
55
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"coverage": "vitest run --coverage",
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66
56
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"coverage:preview": "npx serve coverage -p 9052",
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|
-
"lint": "tsc --noEmit",
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57
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+
"lint": "eslint && tsc --noEmit",
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68
58
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"typecheck": "tsc --noEmit",
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59
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"build": "tsc",
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"build:bundle": "node scripts/build-bundle.js",
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@@ -75,6 +65,12 @@
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75
65
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"commit": "cz",
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76
66
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"serve": "npm run build:bundle && vite",
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77
67
|
"examples": "npm run build:bundle && vite",
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78
|
-
"ready:commit": "npm run build && npm run lint && npm run test:run"
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68
|
+
"ready:commit": "npm run build && npm run lint && npm run test:run",
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69
|
+
"docs:api": "typedoc && node scripts/sanitize-api-docs.js",
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70
|
+
"docs:api:watch": "typedoc --watch",
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71
|
+
"docs:dev": "vitepress dev docs",
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72
|
+
"docs:watch": "npm run docs:api && (npm run docs:api:watch & npm run docs:dev & wait)",
|
|
73
|
+
"docs:build": "npm run docs:api && vitepress build docs",
|
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74
|
+
"docs:preview": "vitepress preview docs"
|
|
79
75
|
}
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|
80
76
|
}
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|
@@ -2,7 +2,7 @@
|
|
|
2
2
|
* Kamada-Kawai layout algorithm optimization functions
|
|
3
3
|
*/
|
|
4
4
|
|
|
5
|
-
import {
|
|
5
|
+
import type { Graph } from "../../types";
|
|
6
6
|
import { getEdgesFromGraph,getNodesFromGraph } from "../../utils/graph";
|
|
7
7
|
import { _lbfgsDirection } from "./lbfgs";
|
|
8
8
|
import { _backtrackingLineSearch } from "./line-search";
|
|
@@ -166,13 +166,13 @@ export function _kamadaKawaiCostfn(
|
|
|
166
166
|
let cost = 0;
|
|
167
167
|
|
|
168
168
|
// Add mean position penalty term
|
|
169
|
-
const sumPos = Array(dim).fill(0);
|
|
169
|
+
const sumPos: number[] = Array(dim).fill(0);
|
|
170
170
|
for (let i = 0; i < nNodes; i++) {
|
|
171
171
|
for (let d = 0; d < dim; d++) {
|
|
172
172
|
sumPos[d] += positions[i][d];
|
|
173
173
|
}
|
|
174
174
|
}
|
|
175
|
-
cost += 0.5 * meanWeight * sumPos.reduce((sum, val) => sum + val * val, 0);
|
|
175
|
+
cost += 0.5 * meanWeight * sumPos.reduce((sum: number, val: number) => sum + val * val, 0);
|
|
176
176
|
|
|
177
177
|
// Add distance penalty terms
|
|
178
178
|
for (let i = 0; i < nNodes; i++) {
|
|
@@ -194,7 +194,7 @@ export function _kamadaKawaiCostfn(
|
|
|
194
194
|
// Add gradient of mean position penalty
|
|
195
195
|
for (let i = 0; i < nNodes; i++) {
|
|
196
196
|
for (let d = 0; d < dim; d++) {
|
|
197
|
-
grad[i * dim + d] += meanWeight * sumPos[d];
|
|
197
|
+
(grad[i * dim + d] as number) += meanWeight * sumPos[d];
|
|
198
198
|
}
|
|
199
199
|
}
|
|
200
200
|
|
|
@@ -212,8 +212,8 @@ export function _kamadaKawaiCostfn(
|
|
|
212
212
|
|
|
213
213
|
for (let d = 0; d < dim; d++) {
|
|
214
214
|
const force = idealInvDist * offset * direction[d];
|
|
215
|
-
grad[i * dim + d] += force;
|
|
216
|
-
grad[j * dim + d] -= force;
|
|
215
|
+
(grad[i * dim + d] as number) += force;
|
|
216
|
+
(grad[j * dim + d] as number) -= force;
|
|
217
217
|
}
|
|
218
218
|
}
|
|
219
219
|
}
|
|
@@ -7,10 +7,10 @@
|
|
|
7
7
|
* @param grad - Current gradient
|
|
8
8
|
* @param sList - List of position differences (s_k)
|
|
9
9
|
* @param yList - List of gradient differences (y_k)
|
|
10
|
-
* @param
|
|
10
|
+
* @param _m - Memory size (unused, kept for API compatibility)
|
|
11
11
|
* @returns Direction vector
|
|
12
12
|
*/
|
|
13
|
-
export function _lbfgsDirection(grad: number[], sList: number[][], yList: number[][],
|
|
13
|
+
export function _lbfgsDirection(grad: number[], sList: number[][], yList: number[][], _m: number): number[] {
|
|
14
14
|
if (sList.length === 0) {
|
|
15
15
|
// First iteration - use negative gradient
|
|
16
16
|
return grad.map((g) => -g);
|